RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4510
(812 letters)
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 324 bits (832), Expect = e-103
Identities = 88/427 (20%), Positives = 154/427 (36%), Gaps = 65/427 (15%)
Query: 70 PSAYVMLHEAQTGAPCLSFDIIKDELGDERTAYPQTLYAVAGTQSKKFNFNRLIVMKMSN 129
P Y ++ P L+ + D + Y + GT + N L++ +
Sbjct: 33 PFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVH-RLILGTHTSDEQ-NHLLIASVQL 90
Query: 130 LTSTEEDNERELEDDENDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEP 189
+ + + ++++ + K I H E +
Sbjct: 91 PSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI---------NHEGEVNRARYMPQNA 141
Query: 190 GVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQLAE 249
V+AT ++ ++ D + +
Sbjct: 142 CVIATKTPSSDVLVF----------------------------DYTKHPSKPEPSGE--- 170
Query: 250 HNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW---TPREAG 306
P GH EG+ + W+ G L + I +W +
Sbjct: 171 ------------CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH 218
Query: 307 AWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHT 366
+ GHT VED+ W + + S + D + IWDTR NT T+ AHT
Sbjct: 219 RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHT 277
Query: 367 SDVNVISWNR-TEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESS 425
++VN +S+N +E ++ +G D + +WDLR K + +F+ H + V+W P +
Sbjct: 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNET 335
Query: 426 TFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKE-IKELHWHPQLPG 484
AS G D ++ +WDL+ + EQ + +D P +LLFIH G I + W+P P
Sbjct: 336 ILASSGTDRRLHVWDLSKIGE---EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392
Query: 485 TIISTAN 491
I S +
Sbjct: 393 IICSVSE 399
Score = 122 bits (308), Expect = 7e-30
Identities = 32/218 (14%), Positives = 60/218 (27%), Gaps = 46/218 (21%)
Query: 545 SMSNLTSTEEDNERELEDDESEGSGDEDRRKDPVMNSYFIRHRGCINRVRTCQYGSTTLA 604
S+ + + + ++++ E G + I H G +NR R + +A
Sbjct: 87 SVQLPSEDAQFDGSHYDNEKGE-FGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIA 145
Query: 605 GVWGEVGKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDW 664
V ++D + + P GH EG+ + W
Sbjct: 146 T-KTPSSDVLVFDYTKHPSKPEPSGE---------------CQPDLRLRGHQKEGYGLSW 189
Query: 665 SSTEPGVLATGDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAW 724
+ G L + I +W +
Sbjct: 190 NPNLNGYLLSASDDHTICLWDIN-----------------------------ATPKEHRV 220
Query: 725 QVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ GHT VED+ W + + S + D+ I
Sbjct: 221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI 258
Score = 60.5 bits (147), Expect = 9e-10
Identities = 62/409 (15%), Positives = 123/409 (30%), Gaps = 109/409 (26%)
Query: 413 PVTTVEWHPTES--------------STFASGGADDQIALWDLAV-------------ER 445
P T +W P + T S + + + + +
Sbjct: 47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD-EQNHLLIASVQLPSEDAQFDGSHYDNE 105
Query: 446 DSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIF-------- 497
E + + ++ H G E+ + PQ +I+T ++
Sbjct: 106 KGEFGGFGSVCGKIEIEIKINHEG--EVNRARYMPQ-NACVIATKTPSSDVLVFDYTKHP 162
Query: 498 -RTISDLPSQLLFIHLG-QKEIKELHWHPQLPGTIISTANSGFNIFRTISMSNLTSTEED 555
+ Q G QKE L W+P L G ++S ++ TI + ++ +T ++
Sbjct: 163 SKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH-----TICLWDINATPKE 217
Query: 556 NERELEDDESEGSGDEDRRKDPVMNSYFIRHRGCINRVRTCQYGSTTLAGVWGEVGKVGI 615
+ + + F H + V + V + K+ I
Sbjct: 218 H------------------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV-ADDQKLMI 258
Query: 616 WDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATG 675
WD + K P + H E + ++ +LATG
Sbjct: 259 WDTRN---------------NNTSK-------PSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 676 DCKRNIHIW---TPREAGA---------WSVYLYTNRFGVLATGDCKRNIHIW---TPRE 720
+ + +W + + V + +LA+ R +H+W E
Sbjct: 297 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356
Query: 721 AGAWQVDQKP-------LVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ + + GHT + D W+P E ++ S S D ++
Sbjct: 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 405
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 116 bits (292), Expect = 6e-28
Identities = 47/283 (16%), Positives = 90/283 (31%), Gaps = 55/283 (19%)
Query: 165 PTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTN 224
+ FS H + + +++ + VLA+G I IW
Sbjct: 102 AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW-------------------- 141
Query: 225 SAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTE 284
D+ ++ + L + E ++ W+ +
Sbjct: 142 --------DMNKCTESPSNYTPLT----------------PGQSMSSVDEVISLAWNQSL 177
Query: 285 PGVLATGDCKRNIHIWTPREAGAWQ--VDQKPLVGHTNSVEDLQWSPGEKRVLASCS--- 339
V A+ IW + P G + ++W P +A+ +
Sbjct: 178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD 237
Query: 340 VDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEP-LIVSGGDDGCIHVWDLRRF 398
D SI IWD R N + + TL H + + W + L++S G D + +W+
Sbjct: 238 NDPSILIWDLR--NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP--- 292
Query: 399 KKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
+ ++ F ++ P FA D++I + L
Sbjct: 293 ESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335
Score = 111 bits (279), Expect = 3e-26
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 30/199 (15%)
Query: 264 PLFSFSGHLTEGF-AMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSV 322
P+ S F +DWS ++A ++ +++ EA H++SV
Sbjct: 60 PIASLQVD--SKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV 116
Query: 323 EDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPN--------AHTSDVNVISW 374
+ ++++ + VLAS + I IWD +N + + + +V ++W
Sbjct: 117 KTVKFNAKQDNVLASGGNNGEIFIWD---MNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173
Query: 375 NRTEP-LIVSGGDDGCIHVWDLRRFKKGSSVATFKH------HTAPVTTVEWHP---TES 424
N++ + S G +WDL K V + ++ VEWHP T
Sbjct: 174 NQSLAHVFASAGSSNFASIWDL---KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230
Query: 425 STFASGGADDQ-IALWDLA 442
+T A+G +D I +WDL
Sbjct: 231 AT-ATGSDNDPSILIWDLR 248
Score = 110 bits (276), Expect = 7e-26
Identities = 50/292 (17%), Positives = 93/292 (31%), Gaps = 75/292 (25%)
Query: 168 PLFSFSGHLTEGF-AMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSA 226
P+ S F +DWS ++A ++ +++ EA H++S
Sbjct: 60 PIASLQVD--SKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV 116
Query: 227 EDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPG 286
+ ++++ Q ++
Sbjct: 117 KTVKFN-----------AKQ-----------------------DNV-------------- 128
Query: 287 VLATGDCKRNIHIW---TPREAGAWQVDQKP--LVGHTNSVEDLQWSPGEKRVLASCSVD 341
LA+G I IW E+ + P + + V L W+ V AS
Sbjct: 129 -LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS 187
Query: 342 LSIRIWDTRVINTKSCMLTLPNA-----HTSDVNVISW---NRTEPLIVSGGD-DGCIHV 392
IWD + K ++ L ++V+ W N T +G D D I +
Sbjct: 188 NFASIWDLK---AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI 244
Query: 393 WDLRRFKKGSSVA--TFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
WDLR ++ + H + +++W + S G D+ + LW+
Sbjct: 245 WDLR---NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE 293
Score = 106 bits (266), Expect = 1e-24
Identities = 73/457 (15%), Positives = 143/457 (31%), Gaps = 102/457 (22%)
Query: 317 GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSD--VNVISW 374
H + + V A+ S D S+ +W + + + D N + W
Sbjct: 21 SHDKIPLLVSGTV-SGTVDANFSTDSSLELWS---LLAADSEKPI-ASLQVDSKFNDLDW 75
Query: 375 NRTEPLIVSGGDDGCIHVWDLR-RFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGAD 433
+ +I D+G + ++ +S+A F +H++ V TV+++ + + ASGG +
Sbjct: 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN 135
Query: 434 DQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSG 493
+I +WD+ + + + L + E+ L W+ L S +S
Sbjct: 136 GEIFIWDMN-----KCTESPSNYTPLTPGQSMSSVD--EVISLAWNQSLAHVFASAGSSN 188
Query: 494 FNIFRTIS--DLPSQLLFIHLGQKEIKELH--------WHPQLPGTIISTANSGFNIFRT 543
S DL ++ IHL WHP+ T ++TA +G + +
Sbjct: 189 -----FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK-NSTRVATA-TGSDNDPS 241
Query: 544 ISMSNLTSTEEDNERELEDDESEGSGDEDRRKDPVMNSYFIRHRGCINRVRTCQYGSTTL 603
I + +L + + L ++G H+ I + C L
Sbjct: 242 ILIWDLRNANT-PLQTL----NQG------------------HQKGILSLDWCHQDEHLL 278
Query: 604 A-GVWGEVGKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAM 662
G V +W+ ++ + L F F
Sbjct: 279 LSS--GRDNTVLLWNPES------------------AE-------QLSQFPARGNWCFKT 311
Query: 663 DWSSTEPGVLATGDCKRNIHIWTPREAGAWSV---------YLYTNRFGVLATGDCKRNI 713
++ P + A I + T + ++ F + + +
Sbjct: 312 KFAPEAPDLFACASFDNKIEVQT-LQNLTNTLDEQETETKQQESETDFWNNVSREESKEK 370
Query: 714 HIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRV 750
+A W +P W+ G K V
Sbjct: 371 PSVFHLQAPTWY--GEPSPAAH-------WAFGGKLV 398
Score = 77.8 bits (192), Expect = 3e-15
Identities = 37/297 (12%), Positives = 70/297 (23%), Gaps = 77/297 (25%)
Query: 155 NKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQ- 213
NK + E ++ W+ + V A+ IW +
Sbjct: 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIH 203
Query: 214 -VDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHL 272
P G ++W + ++A
Sbjct: 204 LSYTSPNSGIKQQLSVVEWHP--------KNSTRVA------------------------ 231
Query: 273 TEGFAMDWSSTEPGVLATGDCK-RNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGE 331
ATG +I IW R A Q GH + L W +
Sbjct: 232 ---------------TATGSDNDPSILIWDLRNAN--TPLQTLNQGHQKGILSLDWCHQD 274
Query: 332 KRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWN-RTEPLIVSGGDDGCI 390
+ +L S D ++ +W+ + + P A + + L D I
Sbjct: 275 EHLLLSSGRDNTVLLWNP---ESAEQLSQFP-ARGNWCFKTKFAPEAPDLFACASFDNKI 330
Query: 391 HVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDS 447
V + + + + + + W+ +S
Sbjct: 331 EVQT-------------------LQNLTNTL-DEQETETKQQESETDFWNNVSREES 367
Score = 76.2 bits (188), Expect = 1e-14
Identities = 49/436 (11%), Positives = 111/436 (25%), Gaps = 117/436 (26%)
Query: 339 SVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRF 398
++ +++ + + + +H ++S + + + D + +W L
Sbjct: 2 AMGSMVKLAE---FSRTATFAW---SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA 55
Query: 399 KKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKD 458
+A+ + + ++W + A + + L+ EA
Sbjct: 56 DSEKPIASLQVDSK-FNDLDWSHN-NKIIAGALDNGSLELYSTN----------EANNAI 103
Query: 459 LPSQLLFIHLGQKEIKELHWHPQLPGTIIS----------TANSGFNIFRTISDLPSQLL 508
H +K + ++ + + S N + L
Sbjct: 104 NSMARFSNHSS--SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS 161
Query: 509 FIHLGQKEIKELHWHPQLPGTIISTANSGFNIFRTISMSNLTSTEEDNERELEDDESEGS 568
+ E+ L W+ L S +S S+ +L + +E L
Sbjct: 162 MSSVD--EVISLAWNQSLAHVFASAGSSN-----FASIWDLKAKKE--VIHLSYTSP--- 209
Query: 569 GDEDRRKDPVMNSYFIRHRGCINRVRTCQYGSTTLAGVWGEV--GKVGIWDLKTALQTVD 626
+ ++ V ST +A G + IWDL+ A +
Sbjct: 210 --------------NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ 255
Query: 627 DPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTP 686
Q GH ++DW + +L + + +W P
Sbjct: 256 TLNQ-----------------------GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292
Query: 687 REAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPG 746
+ + N +++P
Sbjct: 293 ------------------ESAEQLSQ------------------FPARGNWCFKTKFAPE 316
Query: 747 EKRVLASCSVDRSNRI 762
+ A S D +
Sbjct: 317 APDLFACASFDNKIEV 332
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 115 bits (290), Expect = 7e-28
Identities = 29/176 (16%), Positives = 64/176 (36%), Gaps = 10/176 (5%)
Query: 268 FSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQW 327
S +++W T P +A G +I +W + +G +++ +++
Sbjct: 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDY--DVQNKTSFIQGMGPGDAITGMKF 126
Query: 328 SPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP-NAHTSDVNVISWNRTEPLIVSGGD 386
+ L S+ + + D + + ++ + + + ++ +G
Sbjct: 127 NQFNTNQLFVSSIRGATTLRD---FSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS 183
Query: 387 DGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
G + + L G + K H A VT E++P A+ D + LWDL
Sbjct: 184 TGRLLLLGLD----GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235
Score = 99.4 bits (248), Expect = 2e-22
Identities = 26/181 (14%), Positives = 54/181 (29%), Gaps = 9/181 (4%)
Query: 263 PPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSV 322
G M ++ L + + QV
Sbjct: 109 TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDF-SGSVIQVFA-KTDSWDYWY 166
Query: 323 EDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEP-LI 381
+ S +++LA+ + + + H + V +N L+
Sbjct: 167 CCVDVSV-SRQMLATGDSTGRLLLLGLD---GH-EIFKEK-LHKAKVTHAEFNPRCDWLM 220
Query: 382 VSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
+ D + +WDLR K +S H PV ++PT+S+ + ++I ++
Sbjct: 221 ATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS 280
Query: 442 A 442
Sbjct: 281 Y 281
Score = 96.3 bits (240), Expect = 2e-21
Identities = 45/306 (14%), Positives = 87/306 (28%), Gaps = 71/306 (23%)
Query: 172 FSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQW 231
S +++W T P +A G +I +W + G ++ +++
Sbjct: 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDY--DVQNKTSFIQGMGPGDAITGMKF 126
Query: 232 S-------------------DLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHL 272
+ D ++ V
Sbjct: 127 NQFNTNQLFVSSIRGATTLRDFSGSVIQV-----------------------FAKTDSWD 163
Query: 273 TEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK 332
+D S + +LATGD + + ++ H V +++P
Sbjct: 164 YWYCCVDVSVS-RQMLATGDSTGRLLLLGLDGHEIFK-----EKLHKAKVTHAEFNPRCD 217
Query: 333 RVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWN-RTEPLIVSGGDDGCIH 391
++A+ SVD ++++WD R I K+ + H VN +N +++ I
Sbjct: 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR 276
Query: 392 VWDLRRFKKGSSVATFKHHT------APVTTVEWHPTESSTFASGGADD---------QI 436
V+ S H WHP +G D I
Sbjct: 277 VYSS---YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYD-LIVAGRYPDDQLLLNDKRTI 332
Query: 437 ALWDLA 442
++D
Sbjct: 333 DIYDAN 338
Score = 90.5 bits (225), Expect = 2e-19
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 7/131 (5%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP-NAHTSDVNV 371
+ V L+W P +A S I +WD + ++ + +
Sbjct: 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWD---YDVQNKTSFIQGMGPGDAITG 123
Query: 372 ISWNRTEP-LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASG 430
+ +N+ + G + D A V+ + A+G
Sbjct: 124 MKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVS-RQMLATG 181
Query: 431 GADDQIALWDL 441
+ ++ L L
Sbjct: 182 DSTGRLLLLGL 192
Score = 51.6 bits (124), Expect = 5e-07
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 362 PNAHTSDVNVISWNRTEPLIVSGGDDGC--IHVWDLRRFKKGSSVATFKHHTAPVTTVEW 419
TS ++ I + I + + L K T VT++EW
Sbjct: 25 KVGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSL---KSYKLHRTASPFDRRVTSLEW 81
Query: 420 HPTESSTFASGGADDQIALWDLAVERDSEIEQ 451
HPT +T A G I LWD V+ + Q
Sbjct: 82 HPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ 113
Score = 51.6 bits (124), Expect = 5e-07
Identities = 22/153 (14%), Positives = 53/153 (34%), Gaps = 23/153 (15%)
Query: 259 GIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGH 318
+ H A ++ T+ L T D + I +++ + ++ H
Sbjct: 237 IKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK----PDQIIIH 292
Query: 319 TN------SVEDLQWSPGEKRVLASCSVDL--------SIRIWDTRVINTKSCMLTLPNA 364
+ + W P ++A D +I I+D N+ + L +
Sbjct: 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDA---NSGGLVHQLRDP 349
Query: 365 HTSD-VNVISWNRTEPLIVSGGDDGCIHVWDLR 396
+ + +++ ++ T ++ SG I +W+
Sbjct: 350 NAAGIISLNKFSPTGDVLASGMG-FNILIWNRE 381
Score = 44.3 bits (105), Expect = 1e-04
Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 703 VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+A G +I +W + +G +++ ++++ L S+ + +
Sbjct: 88 TVAVGSKGGDIILWDY--DVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145
Score = 43.5 bits (103), Expect = 2e-04
Identities = 24/214 (11%), Positives = 54/214 (25%), Gaps = 46/214 (21%)
Query: 568 SGDEDR--------RKDPVMNSYFIRHRGCINRVRTCQYGSTTLA-GVWGEVGKVGIWDL 618
G + ++ + I ++ Q+ + L G + D
Sbjct: 91 VGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS--SIRGATTLRDF 148
Query: 619 KTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCK 678
++ V +D S + +LATGD
Sbjct: 149 SGSVIQV-----------------------FAKTDSWDYWYCCVDVSVS-RQMLATGDST 184
Query: 679 RNIHIWTPREAGAWSVYLYTNRFG----------VLATGDCKRNIHIWTPREAGAWQVDQ 728
+ + + L+ + ++AT + +W R +
Sbjct: 185 GRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR-NIKDKNSY 243
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ H V ++P + L + R+
Sbjct: 244 IAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRV 277
Score = 34.6 bits (80), Expect = 0.11
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 695 YLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASC 754
Y+Y + G ++ + R ++++ + V L+W P +A
Sbjct: 34 YIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKL-HRTASPFDRRVTSLEWHPTHPTTVAVG 92
Query: 755 SVDRSNRI 762
S +
Sbjct: 93 SKGGDIIL 100
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 113 bits (285), Expect = 3e-27
Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 6/157 (3%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
T + ++ ++ W+ + H V + W+P R + +CS D + ++
Sbjct: 26 FVTTTATNQVELYE-QDGNGWKHAR-TFSDHDKIVTCVDWAPKSNR-IVTCSQDRNAYVY 82
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLR-RFKKGSSVAT 406
+ R T L L + W+ E G I V S
Sbjct: 83 EKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL 141
Query: 407 FKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAV 443
+ + + +++WHP + A+G AD + + V
Sbjct: 142 KRPLRSTILSLDWHPN-NVLLAAGCADRKAYVLSAYV 177
Score = 97.5 bits (243), Expect = 6e-22
Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 4/130 (3%)
Query: 317 GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNR 376
+ ++ + + + +++ + N T + H V + W
Sbjct: 9 ILPKPSYEHAFNSQRTE-FVTTTATNQVELYE-QDGNGWKHARTF-SDHDKIVTCVDWAP 65
Query: 377 TEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQI 436
IV+ D +V++ R T V W P E FA G I
Sbjct: 66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVI 124
Query: 437 ALWDLAVERD 446
++ E D
Sbjct: 125 SVCYFEQEND 134
Score = 97.5 bits (243), Expect = 8e-22
Identities = 32/187 (17%), Positives = 58/187 (31%), Gaps = 17/187 (9%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
+ T RN +++ R G W+ L+ + ++WSP E + A S I +
Sbjct: 70 IVTCSQDRNAYVYEKRPDGTWKQ-TLVLLRLNRAATFVRWSPNEDK-FAVGSGARVISVC 127
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRR---------- 397
N L S + + W+ L+ +G D +V
Sbjct: 128 YFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS 187
Query: 398 ----FKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQRE 453
++V V V + P+ + A G D + + +
Sbjct: 188 VWGSRLPFNTVCAEYPSGGWVHAVGFSPS-GNALAYAGHDSSVTIAYPSAPEQPPRALIT 246
Query: 454 AELKDLP 460
+L LP
Sbjct: 247 VKLSQLP 253
Score = 66.3 bits (162), Expect = 1e-11
Identities = 39/272 (14%), Positives = 77/272 (28%), Gaps = 31/272 (11%)
Query: 192 LATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWS-----------DLKTALQT 240
A G R I + + W V + ++ L W D K + +
Sbjct: 115 FAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLS 174
Query: 241 VDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW 300
+ + G +P + + A+ +S + LA ++ I
Sbjct: 175 AYVR-DVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSG-NALAYAGHDSSVTIA 232
Query: 301 TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLT 360
P + + L W+ E ++A+ I +
Sbjct: 233 YPSAPEQPPRALITVKLSQLPLRSLLWAN-ESAIVAAGYNYSPILLQGN------ESGWA 285
Query: 361 LPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLR-RFKKGSSVATFKH-------HTA 412
+ + S+ T ++G + LR F+ + + H
Sbjct: 286 HTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQN 345
Query: 413 PVTTV---EWHPTESSTFASGGADDQIALWDL 441
+ T+ P + F S G D ++ LW L
Sbjct: 346 MIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377
Score = 66.3 bits (162), Expect = 1e-11
Identities = 41/277 (14%), Positives = 70/277 (25%), Gaps = 44/277 (15%)
Query: 192 LATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTAL------QTVDDPF 245
+ T RN +++ R G W+ L +A ++WS + + +
Sbjct: 70 IVTCSQDRNAYVYEKRPDGTWKQ-TLVLLRLNRAATFVRWSPNEDKFAVGSGARVI---- 124
Query: 246 QLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGV-LATGDCKRNIHIWTPRE 304
+ ++ + ++DW V LA G R ++
Sbjct: 125 SVCYFEQENDWWVSKHL-----KRPLRSTILSLDWHPN--NVLLAAGCADRKAYVL---S 174
Query: 305 AGAWQVDQKP----------------LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWD 348
A VD KP V + +SP LA D S+ I
Sbjct: 175 AYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNA-LAYAGHDSSVTIAY 233
Query: 349 TRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVW----DLRRFKKGSSV 404
L + + W E IV+ G + + +
Sbjct: 234 PSAPEQPPRALITVKLSQLPLRSLLWA-NESAIVAAGYNYSPILLQGNESGWAHTRDLDA 292
Query: 405 ATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
T K E + DL
Sbjct: 293 GTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDL 329
Score = 58.2 bits (141), Expect = 4e-09
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 365 HTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTES 424
++N V+ + +++ + TF H VT V+W P +S
Sbjct: 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYE-QDGNGWKHARTFSDHDKIVTCVDWAP-KS 67
Query: 425 STFASGGADDQIALWDLAVERDSE 448
+ + D +++ + +
Sbjct: 68 NRIVTCSQDRNAYVYEKRPDGTWK 91
Score = 47.4 bits (113), Expect = 1e-05
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 14/104 (13%)
Query: 672 LATGDCKRNIHIWTPREAGAWSVYLYTNRFG-------------VLATGDCKRNIHIWTP 718
+ T RN +++ R G W L R A G R I +
Sbjct: 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYF 129
Query: 719 REAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ W V + +++ L W P LA+ DR +
Sbjct: 130 EQENDWWVSKHLKRPLRSTILSLDWHPNNVL-LAAGCADRKAYV 172
Score = 42.8 bits (101), Expect = 3e-04
Identities = 24/166 (14%), Positives = 43/166 (25%), Gaps = 14/166 (8%)
Query: 190 GVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDD----PF 245
LA ++ I P + L W++ + +
Sbjct: 218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILL 277
Query: 246 QLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREA 305
Q E + T SF+ G E G ++ + +
Sbjct: 278 QGNESGWAHTRDLDAGTSKT-SFTHTGNTG----EGREEEGPVSFTALRSTFRNMDLK-- 330
Query: 306 GAWQVDQKPLVGHTNSVEDLQW---SPGEKRVLASCSVDLSIRIWD 348
G+ Q H N + L+ +PG S D + +W
Sbjct: 331 GSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376
Score = 36.3 bits (84), Expect = 0.042
Identities = 5/41 (12%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 402 SSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
++ P ++ + + F + A +Q+ L++
Sbjct: 2 ATSQVLHILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQD 41
Score = 33.6 bits (77), Expect = 0.28
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 702 GVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLAS 753
LA ++ I P + + L W+ E ++A+
Sbjct: 218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN-ESAIVAA 268
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 111 bits (281), Expect = 3e-27
Identities = 53/259 (20%), Positives = 88/259 (33%), Gaps = 42/259 (16%)
Query: 169 LFSFSGHLTEGFAMDWSSTEPG-VLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAE 227
+GH + ++ W+ + G +LA G I + T G W+V +K HT
Sbjct: 96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV-KKINNAHTIGCN 154
Query: 228 DLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGV 287
+ W+ +D P + KR
Sbjct: 155 AVSWAPAVVPGSLIDHPSGQKPNYIKR--------------------------------- 181
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP---GEKRVLASCSVDLSI 344
A+G C I +W E G W+ +Q L H++ V D+ W+P +ASCS D +
Sbjct: 182 FASGGCDNLIKLWKEEEDGQWKEEQ-KLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240
Query: 345 RIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSV 404
IW ++ + L + V +SW+ T ++ G D + +W
Sbjct: 241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE---SVDGQW 297
Query: 405 ATFKHHTAPVTTVEWHPTE 423
+V TE
Sbjct: 298 VCISDVNKGQGSVSASVTE 316
Score = 104 bits (262), Expect = 1e-24
Identities = 43/203 (21%), Positives = 71/203 (34%), Gaps = 25/203 (12%)
Query: 265 LFSFSGHLTEGFAMDWSSTEPG-VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVE 323
+GH + ++ W+ + G +LA G I + T G W+V +K HT
Sbjct: 96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV-KKINNAHTIGCN 154
Query: 324 DLQWSP----------------GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTS 367
+ W+P + AS D I++W L AH+
Sbjct: 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSD 213
Query: 368 DVNVISW----NRTEPLIVSGGDDGCIHVWDLRRFKKGS-SVATFKHHTAPVTTVEWHPT 422
V ++W I S DG + +W + S V V W T
Sbjct: 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT 273
Query: 423 ESSTFASGGADDQIALWDLAVER 445
++ A G D+++ LW +V+
Sbjct: 274 -ANILAVSGGDNKVTLWKESVDG 295
Score = 100 bits (250), Expect = 4e-23
Identities = 44/184 (23%), Positives = 63/184 (34%), Gaps = 25/184 (13%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK-RVLASCSVDLSIRI 346
LAT R++ I+ G + L GH V + W+ +LASCS D + I
Sbjct: 28 LATCSSDRSVKIFDV-RNGGQIL-IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85
Query: 347 WDTRVINTKSCMLTLP-NAHTSDVNVISW--NRTEPLIVSGGDDGCIHVWDLRRFKKGSS 403
W + + H S VN + W + ++ G DG I + +
Sbjct: 86 WRE---ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV 142
Query: 404 VATFKHHTAPVTTVEWHP----------------TESSTFASGGADDQIALWDLAVERDS 447
HT V W P FASGG D+ I LW +
Sbjct: 143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW 202
Query: 448 EIEQ 451
+ EQ
Sbjct: 203 KEEQ 206
Score = 93.1 bits (232), Expect = 8e-21
Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 7/143 (4%)
Query: 312 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNV 371
H + + D Q R LA+CS D S++I+D R + + L H V
Sbjct: 6 NTVDTSHEDMIHDAQMDYYGTR-LATCSSDRSVKIFDVR-NGGQILIADL-RGHEGPVWQ 62
Query: 372 ISWNRTEP--LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTES-STFA 428
++W ++ S D + +W H + V +V W P + A
Sbjct: 63 VAWAHPMYGNILASCSYDRKVIIWREEN-GTWEKSHEHAGHDSSVNSVCWAPHDYGLILA 121
Query: 429 SGGADDQIALWDLAVERDSEIEQ 451
G +D I+L E E+++
Sbjct: 122 CGSSDGAISLLTYTGEGQWEVKK 144
Score = 43.4 bits (103), Expect = 2e-04
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 691 AWSVYLYTNRFG-VLATG--DCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGE 747
AW+ +G +LA+ D K + IW E G W+ GH +SV + W+P +
Sbjct: 64 AWA----HPMYGNILASCSYDRK--VIIWR-EENGTWEK-SHEHAGHDSSVNSVCWAPHD 115
Query: 748 K-RVLASCSVDRSNRI 762
+LA S D + +
Sbjct: 116 YGLILACGSSDGAISL 131
Score = 41.9 bits (99), Expect = 6e-04
Identities = 21/133 (15%), Positives = 36/133 (27%), Gaps = 22/133 (16%)
Query: 650 FSFSGHLTEGFAMDWSSTEPGV--LATGDCKRNIHIWTPREAGAWSVYL----------- 696
++ + + A+G C I +W E G W
Sbjct: 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD 217
Query: 697 ------YTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKR 749
+A+ + IWT +A + K L + V + WS
Sbjct: 218 VAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA--N 275
Query: 750 VLASCSVDRSNRI 762
+LA D +
Sbjct: 276 ILAVSGGDNKVTL 288
Score = 39.9 bits (94), Expect = 0.002
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 17/75 (22%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP----------------GE 747
LA G I + T G W+V +K HT + W+P
Sbjct: 120 LACGSSDGAISLLTYTGEGQWEV-KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNY 178
Query: 748 KRVLASCSVDRSNRI 762
+ AS D ++
Sbjct: 179 IKRFASGGCDNLIKL 193
Score = 38.8 bits (91), Expect = 0.005
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 728 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
H + + D Q R LA+CS DRS +I
Sbjct: 6 NTVDTSHEDMIHDAQMDYYGTR-LATCSSDRSVKI 39
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 116 bits (292), Expect = 7e-27
Identities = 38/181 (20%), Positives = 75/181 (41%), Gaps = 13/181 (7%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVE 323
+ F H ++ T+P + +G + +W W ++Q GH + V
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNW--ENNWALEQ-TFEGHEHFVM 144
Query: 324 DLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI--SWNRTEPLI 381
+ ++P + AS +D ++++W + + TL VN + +P +
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWS---LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201
Query: 382 VSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
++ DD I +WD + S VAT + H + V+ +HP SG D + +W+
Sbjct: 202 ITASDDLTIKIWDY---QTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNS 257
Query: 442 A 442
+
Sbjct: 258 S 258
Score = 105 bits (264), Expect = 2e-23
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 268 FSGHLTEGFAMD--WSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDL 325
F GH E F M ++ +P A+G R + +W G + G V +
Sbjct: 136 FEGH--EHFVMCVAFNPKDPSTFASGCLDRTVKVW---SLGQSTPNFTLTTGQERGVNYV 190
Query: 326 QWSP-GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSG 384
+ P +K + + S DL+I+IWD TKSC+ TL H S+V+ ++ T P+I+SG
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWD---YQTKSCVATL-EGHMSNVSFAVFHPTLPIIISG 246
Query: 385 GDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVE 444
+DG + +W+ T + HPT + + G D+ + L +
Sbjct: 247 SEDGTLKIWNS---STYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303
Query: 445 R 445
Sbjct: 304 E 304
Score = 100 bits (251), Expect = 6e-22
Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 9/131 (6%)
Query: 312 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNV 371
+K ++ V+ + + P E + + + IW+ T+ + ++ + V
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYE---TQVEVRSI-QVTETPVRA 60
Query: 372 ISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGG 431
+ + I+ G DD I V++ G V F+ H + ++ HPT SG
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNY---NTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGS 116
Query: 432 ADDQIALWDLA 442
D + LW+
Sbjct: 117 DDLTVKLWNWE 127
Score = 45.8 bits (109), Expect = 6e-05
Identities = 24/180 (13%), Positives = 39/180 (21%), Gaps = 26/180 (14%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQ-KPLVGHTNSV 322
P S ++ + A+ I E Q K L
Sbjct: 305 PTLSLDPVGKLVWSGGKN-----AAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFP 359
Query: 323 EDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIV 382
+ L SP + V D I+ L N W
Sbjct: 360 QSLAHSPNGRFV-TVVG-DGEYVIYT---------ALAWRNKAFGKCQDFVWGPDSNSYA 408
Query: 383 SGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ G I + +K V ++ S +D + +D
Sbjct: 409 LIDETGQI-----KYYKNFKEVTSWSVPMHSAIDR----LFSGALLGVKSDGFVYFFDWD 459
Score = 39.3 bits (92), Expect = 0.005
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ +G + +W W ++Q GH + V + ++P + AS +DR+ ++
Sbjct: 112 VLSGSDDLTVKLWNW--ENNWALEQ-TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167
Score = 34.7 bits (80), Expect = 0.15
Identities = 29/254 (11%), Positives = 60/254 (23%), Gaps = 43/254 (16%)
Query: 168 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQ-KPLGGHTNSA 226
P S ++ + A+ I E Q K LG
Sbjct: 305 PTLSLDPVGKLVWSGGKN-----AAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFP 359
Query: 227 EDLQWS-DLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEP 285
+ L S + + D + + R K G ++ + +A E
Sbjct: 360 QSLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNS---YA---LIDET 413
Query: 286 GVLATGDCKRNIHIWTPREAGA--------------------WQVDQKPLV----GHTNS 321
G + + + W+ A + D LV +
Sbjct: 414 GQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKD 473
Query: 322 VEDLQWSP-GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPL 380
V WS GE + + + + + + + + + +
Sbjct: 474 V---IWSDNGEL--VMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDV 528
Query: 381 IVSGGDDGCIHVWD 394
+ + W
Sbjct: 529 LYELSESITSGKWV 542
Score = 33.5 bits (77), Expect = 0.34
Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 22/126 (17%)
Query: 652 FSGHLTEGFAMD--WSSTEPGVLATGDCKRNIHIW---------TPRE---AGAWSVYLY 697
F GH E F M ++ +P A+G R + +W T G V Y
Sbjct: 136 FEGH--EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 698 TNRFG-VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSV 756
+ T I IW + + L GH ++V + P ++ S S
Sbjct: 194 PLPDKPYMITASDDLTIKIWDY-QTKSCV---ATLEGHMSNVSFAVFHP-TLPIIISGSE 248
Query: 757 DRSNRI 762
D + +I
Sbjct: 249 DGTLKI 254
Score = 31.6 bits (72), Expect = 1.3
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 728 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+K ++ V+ + + P E + + I
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVEI 39
Score = 30.8 bits (70), Expect = 2.3
Identities = 5/34 (14%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
H + + + P + + S S D + ++
Sbjct: 91 VDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKL 123
Score = 28.9 bits (65), Expect = 7.5
Identities = 13/92 (14%), Positives = 22/92 (23%), Gaps = 11/92 (11%)
Query: 672 LATGDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQ-KP 730
L + ++ + ++ A+ I E Q K
Sbjct: 300 LGNDEPTLSLD-------PVGKLV-WSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKE 351
Query: 731 LVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L + L SP + V D I
Sbjct: 352 LGSVDVFPQSLAHSPNGRFV-TVVG-DGEYVI 381
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 115 bits (289), Expect = 9e-27
Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 12/193 (6%)
Query: 258 PGIPTPPLFSFSGHLTEGF-AMDWSSTEPG-VLATGDCKRNIHIW---TPREAGAWQVDQ 312
PP+ F+GH + + +S + L +GD + +W +E+ + +V+
Sbjct: 49 GDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV 108
Query: 313 K-PLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVN 370
K + D+ W G + + D ++ + + + + H+ +N
Sbjct: 109 KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS---WDSGNSLGEV-SGHSQRIN 164
Query: 371 VISWNRTEP-LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFAS 429
++ P ++ GDDG + + FK +S T + V VE+ P +
Sbjct: 165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT 224
Query: 430 GGADDQIALWDLA 442
G+D +I+ +D
Sbjct: 225 VGSDRKISCFDGK 237
Score = 94.2 bits (235), Expect = 4e-20
Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 24/167 (14%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
L G+ + + +V + SP E +A+ V I ++
Sbjct: 463 LEEGNTIQVFKLSDL------EVSFDLKTPLRAKPSYISISPSETY-IAAGDVMGKILLY 515
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWN----------RTEPLIVSGGDDGCIHVWDLRR 397
D ++ + TS +N ISW E L+ +G D I ++ ++
Sbjct: 516 DL---QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK- 571
Query: 398 FKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVE 444
+ + H V + W ST S GAD I W++ +E
Sbjct: 572 -RPMKIIKALNAHKDGVNNLLWETP--STLVSSGADACIKRWNVVLE 615
Score = 92.7 bits (231), Expect = 1e-19
Identities = 45/295 (15%), Positives = 90/295 (30%), Gaps = 30/295 (10%)
Query: 162 PGIPTPPLFSFSGHLTEGF-AMDWSSTEPG-VLATGDCKRNIHIW---TPREAGAWQVDQ 216
PP+ F+GH + + +S + L +GD + +W +E+ + +V+
Sbjct: 49 GDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV 108
Query: 217 K-PLGGHTNSAEDLQWS-DLKTALQTVDDPFQLAEH--NKKRGKGPGIPTPPLFSFSGHL 272
K D+ W + + L V + + G L SGH
Sbjct: 109 KSEFQVLAGPISDISWDFEGRR-LCVVGEGRDNFGVFISWDSGN-------SLGEVSGHS 160
Query: 273 TEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK 332
A + P T ++ + + + + V D+++SP
Sbjct: 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQG-PPFKFSASDRTHHKQGSFVRDVEFSPDSG 219
Query: 333 RVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEP---LIVSGGDDGC 389
+ + D I +D + + + + V + + + G D
Sbjct: 220 EFVITVGSDRKISCFDGK---SGEFLKYI-EDDQEPVQGGIFALSWLDSQKFATVGADAT 275
Query: 390 IHVWDLRRFKKGSSVATFK--HHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
I VWD+ V + V T + S D + ++L
Sbjct: 276 IRVWDV---TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327
Score = 90.0 bits (224), Expect = 9e-19
Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 23/167 (13%)
Query: 286 GVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIR 345
G A ++ I ++ + + + S L + L + +
Sbjct: 418 GFTAVLTNDDDLLIL---QSFTGDIIKSVRLNSPGSAVSLSQNYVAVG-LEEGNTIQVFK 473
Query: 346 IWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVA 405
+ D + T + + IS + +E I +G G I ++DL +
Sbjct: 474 LSDL---EVSFDLKTP---LRAKPSYISISPSETYIAAGDVMGKILLYDL---QSREVKT 524
Query: 406 T-FKHHTAPVTTVEWHP---------TESSTFASGGADDQIALWDLA 442
+ + T+ + + W P E A+G D I ++ +
Sbjct: 525 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571
Score = 87.3 bits (217), Expect = 6e-18
Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 33/166 (19%)
Query: 288 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK--RVLASCSVDL 342
+ T R I + + K + V+ ++ + A+ D
Sbjct: 222 VITVGSDRKISCFDGKSGEF-------LKYIEDDQEPVQGGIFALSWLDSQKFATVGADA 274
Query: 343 SIRIWDTRVINTKSCMLTLPNAHTSDVNVISW------NRTEPLIVSGGDDGCIHVWDLR 396
+IR+WD T C+ + N I+S DG ++ ++L
Sbjct: 275 TIRVWDVT---TSKCVQKWT-LDKQQLGNQQVGVVATGNGR---IISLSLDGTLNFYEL- 326
Query: 397 RFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ T H +T + +P SG D +I W +
Sbjct: 327 --GHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSS 365
Score = 84.2 bits (209), Expect = 5e-17
Identities = 42/283 (14%), Positives = 89/283 (31%), Gaps = 41/283 (14%)
Query: 168 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAE 227
L SGH A + P T ++ + + + +
Sbjct: 152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG-PPFKFSASDRTHHKQGSFVR 210
Query: 228 DLQWS-DLKTALQTV--DDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWS-ST 283
D+++S D + TV D + K G+ L ++ S
Sbjct: 211 DVEFSPDSGEFVITVGSDRKISC--FDGKSGE-------FLKYIEDDQEPVQGGIFALSW 261
Query: 284 EPG-VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWS---PGEKRVLASCS 339
AT I +W + + QK + + Q G R + S S
Sbjct: 262 LDSQKFATVGADATIRVW---DVTTSKCVQK-WTLDKQQLGNQQVGVVATGNGR-IISLS 316
Query: 340 VDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFK 399
+D ++ ++ + + T+ + H + ++ N ++SG DG I W
Sbjct: 317 LDGTLNFYE---LGHDEVLKTI-SGHNKGITALTVNP----LISGSYDGRIMEWSSSS-- 366
Query: 400 KGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ H+ + +++ + ++S DD + + +
Sbjct: 367 ------MHQDHSNLIVSLDNSK--AQEYSSISWDDTLKVNGIT 401
Score = 76.5 bits (189), Expect = 1e-14
Identities = 21/182 (11%), Positives = 46/182 (25%), Gaps = 41/182 (22%)
Query: 266 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSV 322
++ + +T G + + ++ + K + GH +
Sbjct: 290 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV-------LKTISGHNKGI 342
Query: 323 EDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISW--NRTEPL 380
L +P L S S D I W + ++ H++ + + +
Sbjct: 343 TALTVNP-----LISGSYDGRIMEWSSS---------SMHQDHSNLIVSLDNSKAQE--- 385
Query: 381 IVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
S D + V T + + A DD + +
Sbjct: 386 YSSISWDDTLKVNG----------ITKHEFGSQPKVASANN--DGFTAVLTNDDDLLILQ 433
Query: 441 LA 442
Sbjct: 434 SF 435
Score = 70.0 bits (172), Expect = 2e-12
Identities = 19/135 (14%), Positives = 40/135 (29%), Gaps = 11/135 (8%)
Query: 317 GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNR 376
N L + P + C +R D ++ +S V + ++
Sbjct: 16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVP-PVVQFTGHGSSVVTTVKFSP 74
Query: 377 TE--PLIVSGGDDGCIHVWDLR-----RFKKGSSVATFKHHTAPVTTVEWHPTESSTF-- 427
+ + SG + G + VW + + + F+ P++ + W E
Sbjct: 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCV 133
Query: 428 ASGGADDQIALWDLA 442
G D+
Sbjct: 134 VGEGRDNFGVFISWD 148
Score = 54.9 bits (133), Expect = 7e-08
Identities = 27/160 (16%), Positives = 42/160 (26%), Gaps = 54/160 (33%)
Query: 192 LATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQLAEHN 251
+A GD I ++ + + +V T+ + W
Sbjct: 503 IAAGDVMGKILLY---DLQSREVKTSRWAFRTSKINAISWK------------------- 540
Query: 252 KKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW---TPREAGAW 308
P L +ATG NI I+ P +
Sbjct: 541 ------PAEKGANEEEIEEDL---------------VATGSLDTNIFIYSVKRPMKII-- 577
Query: 309 QVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWD 348
K L H + V +L W L S D I+ W+
Sbjct: 578 ----KALNAHKDGVNNLLWETPST--LVSSGADACIKRWN 611
Score = 52.2 bits (126), Expect = 5e-07
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 361 LPNAHTSDVNVISWNRTEPLIVSGG-DDGCIHVWDLRRFKKGSSVATFK-HHTAPVTTVE 418
P+ + +S++ T I + D K V F H ++ VTTV+
Sbjct: 13 QPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGD-SKVPPVVQFTGHGSSVVTTVK 71
Query: 419 WHPTESSTF-ASGGADDQIALWDLAVERDSEIEQREAELK 457
+ P + S + SG ++ +W D E E +K
Sbjct: 72 FSPIKGSQYLCSGDESGKVIVWG--WTFDKESNSVEVNVK 109
Score = 39.5 bits (93), Expect = 0.005
Identities = 24/115 (20%), Positives = 35/115 (30%), Gaps = 32/115 (27%)
Query: 672 LATGDCKRNIHIW--------TPREAG--------AWS-----VYLYTNRFGVLATGDCK 710
+A GD I ++ T R A +W ++ATG
Sbjct: 503 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 562
Query: 711 RNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
NI I+ P + K L H + V +L W L S D +
Sbjct: 563 TNIFIYSVKRPMKII------KALNAHKDGVNNLLWETPST--LVSSGADACIKR 609
Score = 36.4 bits (85), Expect = 0.042
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
T ++ + + + + V D+++SP + + DR
Sbjct: 176 SMTVGDDGSVVFYQG-PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 233
Score = 36.1 bits (84), Expect = 0.052
Identities = 14/124 (11%), Positives = 34/124 (27%), Gaps = 27/124 (21%)
Query: 650 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPR-----------EAGAWSVYLYT 698
++ + +T G + + ++ + G ++
Sbjct: 290 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITAL---- 345
Query: 699 NRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDR 758
L +G I W+ H+N + L S + +S S D
Sbjct: 346 -TVNPLISGSYDGRIMEWSS---------SSMHQDHSNLIVSLDNSKA--QEYSSISWDD 393
Query: 759 SNRI 762
+ ++
Sbjct: 394 TLKV 397
Score = 35.7 bits (83), Expect = 0.065
Identities = 20/166 (12%), Positives = 42/166 (25%), Gaps = 28/166 (16%)
Query: 642 PGIPTPPLFSFSGHLTEGF-AMDWSSTEPG-VLATGDCKRNIHIW---TPREAGAWSVYL 696
PP+ F+GH + + +S + L +GD + +W +E+ + V +
Sbjct: 49 GDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV 108
Query: 697 YTNRFG-----------------VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVE 739
+ + + ++G + GH+ +
Sbjct: 109 KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISW-DSGN---SLGEVSGHSQRIN 164
Query: 740 DLQWSPGEKRVLASCSVDRSNRI--GARRDMLYCFFVSLVHCIFVW 783
+ D S G FV
Sbjct: 165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR 210
Score = 33.4 bits (77), Expect = 0.33
Identities = 18/134 (13%), Positives = 35/134 (26%), Gaps = 26/134 (19%)
Query: 648 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW--TPREAGAWSVYLYTNRFGV-- 703
L SGH A + P T ++ + P + A + V
Sbjct: 152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD 211
Query: 704 ----------LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK-- 748
+ T R I + + K + V+ ++
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEF-------LKYIEDDQEPVQGGIFALSWLDS 264
Query: 749 RVLASCSVDRSNRI 762
+ A+ D + R+
Sbjct: 265 QKFATVGADATIRV 278
Score = 28.7 bits (65), Expect = 8.6
Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 7/59 (11%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L G+ + + +V + SP E +A+ V +
Sbjct: 463 LEEGNTIQVFKLSDL------EVSFDLKTPLRAKPSYISISPSETY-IAAGDVMGKILL 514
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 111 bits (281), Expect = 2e-26
Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 16/166 (9%)
Query: 277 AMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLA 336
+DWS+ + +RN+++W A + V + V ++WS L+
Sbjct: 98 LLDWSNLN---VVAVALERNVYVW---NADSGSVSALAETDESTYVASVKWSHDGSF-LS 150
Query: 337 SCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLR 396
+ + I+D + +++ + T+ H + V +SWNR ++ SG G IH D+R
Sbjct: 151 VGLGNGLVDIYD---VESQTKLRTM-AGHQARVGCLSWNRH--VLSSGSRSGAIHHHDVR 204
Query: 397 RFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ T + H++ V + W + ASGG D+ + +WD
Sbjct: 205 --IANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDAR 247
Score = 103 bits (259), Expect = 1e-23
Identities = 60/286 (20%), Positives = 104/286 (36%), Gaps = 46/286 (16%)
Query: 181 AMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWS-DLKT-AL 238
+DWS+ + +RN+++W A + V + ++WS D ++
Sbjct: 98 LLDWSNLN---VVAVALERNVYVW---NADSGSVSALAETDESTYVASVKWSHDGSFLSV 151
Query: 239 QTVDDPFQL--AEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRN 296
+ + E K L + +GH + W+ VL++G
Sbjct: 152 GLGNGLVDIYDVESQTK-----------LRTMAGHQARVGCLSWNRH---VLSSGSRSGA 197
Query: 297 IHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKS 356
IH R A L GH++ V L W + LAS D ++IWD R +
Sbjct: 198 IHHHDVRIANHQ---IGTLQGHSSEVCGLAWRSDGLQ-LASGGNDNVVQIWDAR---SSI 250
Query: 357 CMLTLPNAHTSDVNVISWN---RTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAP 413
T H + V ++W G D IH W+ G+ V T +
Sbjct: 251 PKFTK-TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA---ATGARVNTVDAGSQ- 305
Query: 414 VTTVEWHPTESSTFAS--GGADDQIALWDLAVERDSEIEQREAELK 457
VT++ W P S S G D+ +++W + S ++ ++
Sbjct: 306 VTSLIWSPH-SKEIMSTHGFPDNNLSIWSYS----SSGLTKQVDIP 346
Score = 78.4 bits (194), Expect = 2e-15
Identities = 18/127 (14%), Positives = 47/127 (37%), Gaps = 10/127 (7%)
Query: 317 GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNR 376
G + V + +++ ++ +W+ ++ S ++ V + W+
Sbjct: 89 GIIDDYYLNLLDWSNLNV-VAVALERNVYVWN---ADSGSVSALAETDESTYVASVKWSH 144
Query: 377 TEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQI 436
+ G +G + ++D+ + + + T H A V + W+ +SG I
Sbjct: 145 DGSFLSVGLGNGLVDIYDV---ESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAI 198
Query: 437 ALWDLAV 443
D+ +
Sbjct: 199 HHHDVRI 205
Score = 72.3 bits (178), Expect = 2e-13
Identities = 53/267 (19%), Positives = 86/267 (32%), Gaps = 53/267 (19%)
Query: 168 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAE 227
L + +GH + W+ VL++G IH R A L GH++
Sbjct: 168 KLRTMAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIANHQI---GTLQGHSSEVC 221
Query: 228 DLQWSDLKTALQTVDDPFQLAE---------HNKKRGKGPGIPTPPLFSFSGHLTEGFAM 278
L W D QLA + + P F+ + H A+
Sbjct: 222 GLAWRS---------DGLQLASGGNDNVVQIWDARSSI-------PKFTKTNHNAAVKAV 265
Query: 279 DWSSTEPGVLATG----DCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRV 334
W + +LATG D + IH W A G V L WSP K
Sbjct: 266 AWCPWQSNLLATGGGTMD--KQIHFW---NAATGARVNTVDAGS--QVTSLIWSPHSKE- 317
Query: 335 LASC--SVDLSIRIWDTRVINTKSCMLTLP-NAHTSDVNVISWNRTEPLIVSGGDDGCIH 391
+ S D ++ IW ++ + AH + V + + ++ + D +
Sbjct: 318 IMSTHGFPDNNLSIWSY---SSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLK 374
Query: 392 VWDLRRFKKGSSVAT-FKHHTAPVTTV 417
W + G V P +++
Sbjct: 375 FWRV---YDGDHVKRPIPITKTPSSSI 398
Score = 38.4 bits (90), Expect = 0.008
Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 24/130 (18%)
Query: 648 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWSVYLYTNRFGV---- 703
L + +GH + W+ VL++G IH R A L + V
Sbjct: 168 KLRTMAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA 224
Query: 704 -------LATG--DCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLA-- 752
LA+G D + IW + + H +V+ + W P + +LA
Sbjct: 225 WRSDGLQLASGGNDNV--VQIW-DARSSIPK---FTKTNHNAAVKAVAWCPWQSNLLATG 278
Query: 753 SCSVDRSNRI 762
++D+
Sbjct: 279 GGTMDKQIHF 288
Score = 36.1 bits (84), Expect = 0.041
Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 28/134 (20%)
Query: 648 PLFSFSGHLTEGFAMDWSSTEPGVLATG----DCKRNIHIW---------TPREAG---- 690
P F+ + H A+ W + +LATG D + IH W T +AG
Sbjct: 251 PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD--KQIHFWNAATGARVNTV-DAGSQVT 307
Query: 691 --AWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK 748
WS + + + G N+ IW+ +G + + H V SP +
Sbjct: 308 SLIWSPH--SKEI-MSTHGFPDNNLSIWSYSSSGLTKQV--DIPAHDTRVLYSALSPDGR 362
Query: 749 RVLASCSVDRSNRI 762
+ ++ + D + +
Sbjct: 363 IL-STAASDENLKF 375
Score = 32.2 bits (74), Expect = 0.62
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 711 RNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
RN+++W A + V + V ++WS L+ + I
Sbjct: 113 RNVYVW---NADSGSVSALAETDESTYVASVKWSHDGSF-LSVGLGNGLVDI 160
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 112 bits (283), Expect = 5e-26
Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 11/158 (6%)
Query: 288 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSI 344
A+ I ++ + G ++ D V H+ SV L WSP + +AS S D +I
Sbjct: 205 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTI 263
Query: 345 RIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSV 404
+IW+ + T T+P + + T+ +VS +G I+ + GS
Sbjct: 264 KIWN---VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE---LGSID 317
Query: 405 ATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
H +T + + T S A+ I WD++
Sbjct: 318 QVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDIS 354
Score = 105 bits (264), Expect = 1e-23
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCS--VDLSIR 345
A+GD N+ IW + + + + V+D+ W KR +A+ +
Sbjct: 74 CASGDVHGNVRIWDT--TQTTHILKTTIPVFSGPVKDISWDSESKR-IAAVGEGRERFGH 130
Query: 346 IWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPL-IVSGGDDGCIHVWDLRRFKKGSSV 404
++ +T + L +N + + + P I+SG DD + +++ FK
Sbjct: 131 VFL---FDTGTSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK---FK 183
Query: 405 ATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+TF HT V +V ++P + S FAS G D I L++
Sbjct: 184 STFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGV 220
Score = 102 bits (256), Expect = 1e-22
Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 11/156 (7%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
+A G +H++ + V + + H + + +S L + + +
Sbjct: 463 VAVGGQDSKVHVY---KLSGASVSEVKTIVHPAEITSVAFSNNGAF-LVATDQSRKVIPY 518
Query: 348 DTRVINTKSCMLTLP--NAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVA 405
+ HT+ V +SW+ + +G D + VW++ + +
Sbjct: 519 SVA---NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK-PSDHPII 574
Query: 406 TFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
H +T S G D I W++
Sbjct: 575 IKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNV 609
Score = 101 bits (255), Expect = 2e-22
Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 17/159 (10%)
Query: 287 VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRI 346
G + + + D + H++ + SP AS V ++RI
Sbjct: 34 QYCNGTSVYTVPVGSLT-------DTEIYTEHSHQTTVAKTSPSGYY-CASGDVHGNVRI 85
Query: 347 WDTRVINTKSCMLTLP-NAHTSDVNVISWNRTEPLIVSGGD--DGCIHVWDLRRFKKGSS 403
WDT + +L + V ISW+ I + G+ + HV+ G+S
Sbjct: 86 WDT---TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF---DTGTS 139
Query: 404 VATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ +V++ P+ SG D+ +A+++
Sbjct: 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 178
Score = 100 bits (252), Expect = 3e-22
Identities = 37/270 (13%), Positives = 75/270 (27%), Gaps = 50/270 (18%)
Query: 192 LATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWS-------------DLKTAL 238
A+GD N+ IW + + + + +D+ W + +
Sbjct: 74 CASGDVHGNVRIWDT--TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 131
Query: 239 QTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIH 298
D +G ++D+ + P + +G +
Sbjct: 132 FLFDTGTSNGN------------------LTGQARAMNSVDFKPSRPFRIISGSDDNTVA 173
Query: 299 IW--TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT---RVIN 353
I+ P + HT V ++++P AS D +I +++
Sbjct: 174 IFEGPPFKFK------STFGEHTKFVHSVRYNPDGSL-FASTGGDGTIVLYNGVDGTKTG 226
Query: 354 TKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH-HTA 412
AH+ V ++W+ I S D I +W++ T
Sbjct: 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV---ATLKVEKTIPVGTRI 283
Query: 413 PVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ T S A+ I +
Sbjct: 284 EDQQLGIIWT-KQALVSISANGFINFVNPE 312
Score = 100 bits (252), Expect = 3e-22
Identities = 34/259 (13%), Positives = 94/259 (36%), Gaps = 39/259 (15%)
Query: 192 LATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWS-DLKTA-------LQTVDD 243
L + D + +I+ W + ++ H ++ + L+ V
Sbjct: 339 LFSADAEGHINSW---DISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA 395
Query: 244 PFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPR 303
G G + ++ + S+ G +A C ++I I++
Sbjct: 396 G----------GSGVDSSKAVA---NKLSSQPLGLAVSAD--GDIAVAACYKHIAIYS-- 438
Query: 304 EAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPN 363
++ + P+ +++ V S ++ +A D + ++ ++ S
Sbjct: 439 ---HGKLTEVPISYNSSCV---ALSNDKQF-VAVGGQDSKVHVYK---LSGASVSEVKTI 488
Query: 364 AHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTE 423
H +++ ++++ +V+ + + + + + ++ HTA V V W P +
Sbjct: 489 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-D 547
Query: 424 SSTFASGGADDQIALWDLA 442
+ A+G D+ + +W++
Sbjct: 548 NVRLATGSLDNSVIVWNMN 566
Score = 100 bits (252), Expect = 4e-22
Identities = 45/322 (13%), Positives = 90/322 (27%), Gaps = 65/322 (20%)
Query: 168 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW--TPREAGAWQVDQKPLGGHTNS 225
+ +G ++D+ + P + +G + I+ P + G HT
Sbjct: 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK------STFGEHTKF 192
Query: 226 AEDLQWS------------------DLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFS 267
++++ + G G+
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVD------------------GTKTGVFEDDSLK 234
Query: 268 FSGHLTEGFAMDWS---STEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVED 324
H F + WS + +A+ + I IW +V++ VG +
Sbjct: 235 NVAHSGSVFGLTWSPDGTK----IASASADKTIKIW---NVATLKVEKTIPVGTRIEDQQ 287
Query: 325 LQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSG 384
L ++ L S S + I + S H + +S + + S
Sbjct: 288 LGIIWTKQA-LVSISANGFINFVNP---ELGSIDQVR-YGHNKAITALSSSADGKTLFSA 342
Query: 385 GDDGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAV 443
+G I+ WD+ G S F H +T ++ + DD + +
Sbjct: 343 DAEGHINSWDI---STGISNRVFPDVHATMITGIKTTS--KGDLFTVSWDDHLKVVPAGG 397
Query: 444 ERDSEIEQREAELKDLPSQLLF 465
+ +L P L
Sbjct: 398 SGVDSSKAVANKLSSQPLGLAV 419
Score = 74.5 bits (184), Expect = 6e-14
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 12/129 (9%)
Query: 317 GHTNSVEDLQWSP-GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWN 375
+ L +P G+K + + ++ + T H+ V +
Sbjct: 16 TARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEI----YT---EHSHQTTVAKTS 68
Query: 376 RTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQ 435
+ SG G + +WD + T + PV + W ES A+ G +
Sbjct: 69 PSGYYCASGDVHGNVRIWDTTQ-TTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRE 126
Query: 436 --IALWDLA 442
++
Sbjct: 127 RFGHVFLFD 135
Score = 46.0 bits (110), Expect = 4e-05
Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 20/104 (19%)
Query: 671 VLATGDCKRNIHIWTPR--------EAGAWSVYLYTNRF---G-VLATGDCKRNIHIWTP 718
G + + + + G A+GD N+ IW
Sbjct: 34 QYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVA-----KTSPSGYYCASGDVHGNVRIWDT 88
Query: 719 REAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ + + + V+D+ W KR +A+ R
Sbjct: 89 --TQTTHILKTTIPVFSGPVKDISWDSESKR-IAAVGEGRERFG 129
Score = 46.0 bits (110), Expect = 5e-05
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L D R + ++ HT V + WSP R LA+ S+D S +
Sbjct: 506 LVATDQSRKVIPYSV-ANNFELAHTNSWTFHTAKVACVSWSPDNVR-LATGSLDNSVIV 562
Score = 43.0 bits (102), Expect = 3e-04
Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 24/133 (18%)
Query: 648 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPR-----------EAGAWSVYL 696
+ +G ++D+ + P + +G + I+ SV
Sbjct: 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV-- 196
Query: 697 YTNRF----GVLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKR 749
R+ + A+ I ++ + G ++ D V H+ SV L WSP +
Sbjct: 197 ---RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253
Query: 750 VLASCSVDRSNRI 762
+AS S D++ +I
Sbjct: 254 -IASASADKTIKI 265
Score = 37.2 bits (87), Expect = 0.021
Identities = 22/171 (12%), Positives = 42/171 (24%), Gaps = 51/171 (29%)
Query: 611 GKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWS---ST 667
G + +++ G G+ H F + WS +
Sbjct: 212 GTIVLYNGVD------------------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253
Query: 668 EPGVLATGDCKRNIHIW---------TPR---EAGAWSV-YLYTNRFGVLATGDCKRNIH 714
+A+ + I IW T + ++T + L + I+
Sbjct: 254 ----IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA--LVSISANGFIN 307
Query: 715 IW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ GH ++ L S K L S +
Sbjct: 308 FVNPELGSI-------DQVRYGHNKAITALSSSADGKT-LFSADAEGHINS 350
Score = 33.7 bits (78), Expect = 0.27
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 704 LATG--DCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNR 761
+A +R H++ + G L G ++ + + P + S S D +
Sbjct: 118 IAAVGEGRERFGHVFLF-DTGT---SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 173
Query: 762 I 762
I
Sbjct: 174 I 174
Score = 33.7 bits (78), Expect = 0.30
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 672 LATGDCKRNIHIWTPREAGAWSV-YLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKP 730
+A + + WT A V + N LATG ++ +W + +
Sbjct: 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVR--LATGSLDNSVIVWNMNKPSDHPI--II 575
Query: 731 LVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
H S + E + S D + +
Sbjct: 576 KGAHAMSSVNSVIWLNETT-IVSAGQDSNIKF 606
Score = 33.3 bits (77), Expect = 0.38
Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L + D + +I+ W + ++ H + ++ + L + S D ++
Sbjct: 339 LFSADAEGHINSW---DISTGISNRVFPDVHATMITGIKTTSKGD--LFTVSWDDHLKV 392
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 109 bits (274), Expect = 5e-26
Identities = 52/288 (18%), Positives = 91/288 (31%), Gaps = 45/288 (15%)
Query: 184 WSSTEPG-VLATG--DCKRNIHIW-----TPREAGAWQVDQKPLGGHTNSAEDLQW---- 231
W+S E G ++A+ D + +W +G L S +++
Sbjct: 65 WASPEYGRIIASASYDKT--VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH 122
Query: 232 --------SDLKTA-LQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWS- 281
+ L +P L + HL F + W
Sbjct: 123 LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS-----IPPANHLQSDFCLSWCP 177
Query: 282 -STEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRV---LAS 337
P LA ++ I + G V L GH + + + W+P R +A+
Sbjct: 178 SRFSPEKLAVSALEQAIIYQRG-KDGKLHVAA-KLPGHKSLIRSISWAPSIGRWYQLIAT 235
Query: 338 CSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRT--EPLIVSGGDDGC-IHVWD 394
D IRI+ I K L S N ++ + + G D +
Sbjct: 236 GCKDGRIRIFK---ITEKLSPLAS---EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE 289
Query: 395 LRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
L+ + ++ H V +V W+ T + +S G D ++ LW
Sbjct: 290 LQSNLQVELLSEHDDHNGEVWSVSWNLT-GTILSSAGDDGKVRLWKAT 336
Score = 94.7 bits (236), Expect = 4e-21
Identities = 25/176 (14%), Positives = 57/176 (32%), Gaps = 22/176 (12%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK-RVLASCSVDLSIRI 346
+AT ++I ++ + + H +S+ + W+ E R++AS S D ++++
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85
Query: 347 WDT------RVINTKSCMLTLPNAHTSDVNVISWNRTEP--LIVSGGDDGCIHVWDLR-- 396
W+ + + TL N + + + + G+DG + ++D
Sbjct: 86 WEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP 144
Query: 397 --------RFKKGSSVATFKHHTAPVTTVEWHP--TESSTFASGGADDQIALWDLA 442
+ +H + W P A + I
Sbjct: 145 SDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK 200
Score = 91.2 bits (227), Expect = 6e-20
Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 12/141 (8%)
Query: 312 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRV-INTKSCMLTLPNAHTSDVN 370
Q GH + V D+ + + +A+CS D I+++ + + AH S +
Sbjct: 4 QPFDSGHDDLVHDVVYDFYGRH-VATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIV 61
Query: 371 VISWNRTEP--LIVSGGDDGCIHVWD------LRRFKKGSSVATFKHHTAPVTTVEWHPT 422
I W E +I S D + +W+ ++ + + T + +V++ P
Sbjct: 62 AIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPA 121
Query: 423 ES-STFASGGADDQIALWDLA 442
A G D + L+D
Sbjct: 122 HLGLKLACLGNDGILRLYDAL 142
Score = 70.8 bits (174), Expect = 3e-13
Identities = 37/248 (14%), Positives = 63/248 (25%), Gaps = 65/248 (26%)
Query: 170 FSFSGHLTEGFAMDWS--STEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAE 227
+ HL F + W P LA ++ I + G V L GH +
Sbjct: 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG-KDGKLHVAA-KLPGHKSLIR 218
Query: 228 DLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGV 287
+ W+ P L
Sbjct: 219 SISWA-------------------------------PSIGRWYQL--------------- 232
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVE--DLQWSPGEKRV---LASCSVDL 342
+ATG I I+ E PL + S + + +
Sbjct: 233 IATGCKDGRIRIFKITEK------LSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE 286
Query: 343 SIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGS 402
+ + + H +V +SWN T ++ S GDDG + +W +
Sbjct: 287 KAELQSNL---QVELLSEH-DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342
Query: 403 SVATFKHH 410
++
Sbjct: 343 CMSVITAQ 350
Score = 49.2 bits (118), Expect = 3e-06
Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 48/182 (26%)
Query: 611 GKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPG 670
V +W+ + + G L + + +++ ++ G
Sbjct: 81 KTVKLWEEDPDQE----------------ECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG 124
Query: 671 -VLATGDCKRNIHIWTPREAGAWSVYLYTNRFGV-------------------------- 703
LA + ++ E + T+ V
Sbjct: 125 LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK 184
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRV---LASCSVDRSN 760
LA ++ I + G V L GH + + + W+P R +A+ D
Sbjct: 185 LAVSALEQAIIYQRG-KDGKLHVAA-KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI 242
Query: 761 RI 762
RI
Sbjct: 243 RI 244
Score = 41.9 bits (99), Expect = 6e-04
Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK-RVLASCSVDRSNRI 762
+AT ++I ++ + + H +S+ + W+ E R++AS S D++ ++
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85
Score = 41.5 bits (98), Expect = 7e-04
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 703 VLATG--DCKRNIHIW-----TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK-RVLASC 754
++A+ D + +W +G L S+ ++++P LA
Sbjct: 73 IIASASYDKT--VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL 130
Query: 755 SVDRSNRI 762
D R+
Sbjct: 131 GNDGILRL 138
Score = 35.7 bits (83), Expect = 0.051
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 728 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
Q GH + V D+ + + +A+CS D+ ++
Sbjct: 4 QPFDSGHDDLVHDVVYDFYGRH-VATCSSDQHIKV 37
Score = 31.5 bits (72), Expect = 0.94
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
+ + + + + + H V + W+ G +L+S D R+
Sbjct: 279 RSDSNTEEKAELQSNLQVEL----LSEHDDHNGEVWSVSWNLTG--TILSSAGDDGKVRL 332
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 108 bits (273), Expect = 6e-26
Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 6/171 (3%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
LA+ IW + ++ L GH N V+ + W+P LA+CS D S+ +W
Sbjct: 76 LASASFDATTCIWK-KNQDDFECVT-TLEGHENEVKSVAWAPSGNL-LATCSRDKSVWVW 132
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATF 407
+ + C+ L N+HT DV + W+ ++ L+ S D + ++ AT
Sbjct: 133 EVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATL 190
Query: 408 KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKD 458
+ H + V ++ + P AS D + +W + + +
Sbjct: 191 EGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS 240
Score = 108 bits (273), Expect = 6e-26
Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 21/173 (12%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
LA+ + ++ E W L GH ++V L + P +R LASCS D ++RIW
Sbjct: 165 LASASYDDTVKLYRE-EEDDWVC-CATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIW 221
Query: 348 DTRVINTKS------------CMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWD- 394
+ + C+ TL H+ + I+W + + + D I V+
Sbjct: 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281
Query: 395 -----LRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
++ + + H+ V V W+P E AS D ++A W
Sbjct: 282 DPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334
Score = 104 bits (263), Expect = 2e-24
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 5/155 (3%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
LA+ R I IW E +W GH +V + WSP LAS S D + IW
Sbjct: 31 LASCGGDRRIRIWGT-EGDSWICKSVLSEGHQRTVRKVAWSPCGNY-LASASFDATTCIW 88
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATF 407
+ C+ TL H ++V ++W + L+ + D + VW++ + V+
Sbjct: 89 KKNQ-DDFECVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL 146
Query: 408 KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
HT V V WHP++ AS DD + L+
Sbjct: 147 NSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREE 180
Score = 91.1 bits (227), Expect = 7e-20
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 5/138 (3%)
Query: 313 KPLVGHTNS-VEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNV 371
+ H +S L W+P LASC D IRIW T ++ C L H V
Sbjct: 9 GRVPAHPDSRCWFLAWNPAGTL-LASCGGDRRIRIWGTE-GDSWICKSVLSEGHQRTVRK 66
Query: 372 ISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGG 431
++W+ + S D +W + V T + H V +V W P+ + A+
Sbjct: 67 VAWSPCGNYLASASFDATTCIWKKNQ-DDFECVTTLEGHENEVKSVAWAPS-GNLLATCS 124
Query: 432 ADDQIALWDLAVERDSEI 449
D + +W++ E + E
Sbjct: 125 RDKSVWVWEVDEEDEYEC 142
Score = 59.9 bits (146), Expect = 1e-09
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 353 NTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTA 412
++ + +P S ++WN L+ S G D I +W + H
Sbjct: 3 DSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR 62
Query: 413 PVTTVEWHPTESSTFASGGADDQIALWDLA 442
V V W P + AS D +W
Sbjct: 63 TVRKVAWSP-CGNYLASASFDATTCIWKKN 91
Score = 59.1 bits (144), Expect = 2e-09
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 288 LATGDCKRNIHIW-----TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDL 342
LAT I ++ + + + + H+ V + W+P E +LASCS D
Sbjct: 267 LATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326
Query: 343 SIRIWDTRVINTKSCMLTL 361
+ W +
Sbjct: 327 EVAFWK---YQRPEGLHHH 342
Score = 46.4 bits (111), Expect = 2e-05
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 704 LATGDCKRNIHIW-----TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDR 758
LAT I ++ + + + + H+ V + W+P E +LASCS D
Sbjct: 267 LATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326
Query: 759 SNRI 762
Sbjct: 327 EVAF 330
Score = 41.8 bits (99), Expect = 6e-04
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
LA+ IW + ++ L GH N V+ + W+P LA+CS D+S +
Sbjct: 76 LASASFDATTCIWK-KNQDDFECVT-TLEGHENEVKSVAWAPSGNL-LATCSRDKSVWV 131
Score = 40.2 bits (95), Expect = 0.002
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
LA+ R I IW E +W GH +V + WSP LAS S D + I
Sbjct: 31 LASCGGDRRIRIWGT-EGDSWICKSVLSEGHQRTVRKVAWSPCGNY-LASASFDATTCI 87
Score = 39.9 bits (94), Expect = 0.002
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
LA+ + ++ E W L GH ++V L + P +R LASCS DR+ RI
Sbjct: 165 LASASYDDTVKLYRE-EEDDWVC-CATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRI 220
Score = 38.3 bits (90), Expect = 0.007
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
LAT +++ +W E ++ L HT V+ + W P ++ LAS S D + ++
Sbjct: 120 LATCSRDKSVWVWEVDEEDEYEC-VSVLNSHTQDVKHVVWHPSQEL-LASASYDDTVKL 176
Score = 32.5 bits (75), Expect = 0.47
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 729 KPLVGHTNS-VEDLQWSPGEKRVLASCSVDRSNRI 762
+ H +S L W+P LASC DR RI
Sbjct: 9 GRVPAHPDSRCWFLAWNPAGTL-LASCGGDRRIRI 42
Score = 28.7 bits (65), Expect = 7.7
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 724 WQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
W+ H+ ++ D+ W LA+ D + R+
Sbjct: 241 WKCICTLSGFHSRTIYDIAWCQLTGA-LATACGDDAIRV 278
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 109 bits (275), Expect = 8e-26
Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 16/158 (10%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
L + + + H SVE +QW P + + S S D ++++W
Sbjct: 73 LENSSRQS-----YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVW 127
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWN---RTEPLIVSGGDDGCIHVWDLRRFKKGSSV 404
DT NT V + L+ G + + DL K GS
Sbjct: 128 DT---NTLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL---KSGSCS 179
Query: 405 ATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ H + V W P A+ AD ++ LWD+
Sbjct: 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Score = 90.0 bits (224), Expect = 3e-19
Identities = 36/191 (18%), Positives = 55/191 (28%), Gaps = 37/191 (19%)
Query: 270 GHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP 329
G L+ A +P L + + E D+ H + L P
Sbjct: 3 GFLS---ARQTGLEDPLRLRRAE--STRRVLGL-ELNK---DRDVERIHGGGINTLDIEP 53
Query: 330 GEKRVLASCSVDLSIRIWDTRVINTKSCMLTL------------PNAHTSDVNVISWNRT 377
E R + S D I ++D + S P+ H V + W
Sbjct: 54 VEGRYMLSGGSDGVIVLYD---LENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWY-- 108
Query: 378 EP----LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHP--TESSTFASGG 431
P + S D + VWD + F V + P T+ A G
Sbjct: 109 -PHDTGMFTSSSFDKTLKVWDT---NTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGT 163
Query: 432 ADDQIALWDLA 442
++ L DL
Sbjct: 164 RGPKVQLCDLK 174
Score = 87.3 bits (217), Expect = 2e-18
Identities = 33/196 (16%), Positives = 63/196 (32%), Gaps = 35/196 (17%)
Query: 270 GHLTEGFAMDWS--STEPGVLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVED 324
++ S ST+ ++A G + + + L GH +
Sbjct: 139 NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-------SHILQGHRQEILA 191
Query: 325 LQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPN--------------AHTSDVN 370
+ WSP +LA+ S D +++WD R C++TL AH VN
Sbjct: 192 VSWSPRYDYILATASADSRVKLWDVR--RASGCLITLDQHNGKKSQAVESANTAHNGKVN 249
Query: 371 VISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTF--- 427
+ + +++ G D + +W+ G + + T S
Sbjct: 250 GLCFTSDGLHLLTVGTDNRMRLWNS---SNGENTLVNYGKVCNNSKKGLKFTVSCGCSSE 306
Query: 428 -ASGGADDQIALWDLA 442
IA++ +
Sbjct: 307 FVFVPYGSTIAVYTVY 322
Score = 69.6 bits (171), Expect = 1e-12
Identities = 14/130 (10%), Positives = 29/130 (22%), Gaps = 13/130 (10%)
Query: 314 PLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVIS 373
++ +I ++ + + L H V+
Sbjct: 287 VCNNSKKGLKFTVSCGCSSE-FVFVPYGSTIAVYTVY---SGEQITML-KGHYKTVDCCV 341
Query: 374 WNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGAD 433
+ + SG D I W S T + +P S +
Sbjct: 342 FQSNFQELYSGSRDCNILAWVP------SLYEPVPDDDETTTKSQLNPA-FEDAWSSSDE 394
Query: 434 DQ-IALWDLA 442
+ + W
Sbjct: 395 EGGTSAWSHP 404
Score = 62.6 bits (153), Expect = 2e-10
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 9/89 (10%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
L GH +V+ + + L S S D +I W + +
Sbjct: 328 TMLKGHYKTVDCCVFQSNFQE-LYSGSRDCNILAWV---PSLYEPV----PDDDETTTKS 379
Query: 373 SWNRTEPLIVSG-GDDGCIHVWDLRRFKK 400
N S ++G W +F+K
Sbjct: 380 QLNPAFEDAWSSSDEEGGTSAWSHPQFEK 408
Score = 43.0 bits (102), Expect = 3e-04
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
L +G NI W P +P+ + Q +P + +S + W
Sbjct: 349 LYSGSRDCNILAWVPSL-------YEPVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAW 401
Query: 348 DT 349
Sbjct: 402 SH 403
Score = 40.7 bits (96), Expect = 0.001
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L + + + H SVE +QW P + + S S D++ ++
Sbjct: 73 LENSSRQS-----YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKV 126
Score = 40.7 bits (96), Expect = 0.002
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 699 NRFGVLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCS 755
+ ++A G + + + L GH + + WSP +LA+ S
Sbjct: 154 TKHCLVAVGTRGPKVQLCDLKSGSC-------SHILQGHRQEILAVSWSPRYDYILATAS 206
Query: 756 VDRSNRI 762
D ++
Sbjct: 207 ADSRVKL 213
Score = 37.6 bits (88), Expect = 0.013
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 724 WQVD----QKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
++ + H + L P E R + S D +
Sbjct: 28 LGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVL 70
Score = 36.5 bits (85), Expect = 0.033
Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 13/72 (18%)
Query: 703 VLATGDCKRNIHIW------------TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRV 750
+LAT + +W Q + H V L ++
Sbjct: 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH- 259
Query: 751 LASCSVDRSNRI 762
L + D R+
Sbjct: 260 LLTVGTDNRMRL 271
Score = 35.3 bits (82), Expect = 0.067
Identities = 10/95 (10%), Positives = 25/95 (26%), Gaps = 12/95 (12%)
Query: 672 LATGDCKRNIHIWTPREAGAWSVYLYTNRFG-VLATGDCKRNIHIW---TPREAGAWQVD 727
+ G+ + + + + I ++ + +
Sbjct: 274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ------- 326
Query: 728 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L GH +V+ + + L S S D +
Sbjct: 327 ITMLKGHYKTVDCCVFQSNFQE-LYSGSRDCNILA 360
Score = 31.8 bits (73), Expect = 0.81
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRS 759
L +G NI W P +P+ + Q +P + S S +
Sbjct: 349 LYSGSRDCNILAWVPSL-------YEPVPDDDETTTKSQLNPAFED-AWSSSDEEG 396
Score = 29.1 bits (66), Expect = 5.8
Identities = 5/44 (11%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 724 WQVD---QKPLVGHTNSVEDLQWSP--GEKRVLASCSVDRSNRI 762
W + + +V SP + ++A + ++
Sbjct: 127 WDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 109 bits (274), Expect = 1e-25
Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 25/210 (11%)
Query: 242 DDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATG--DCKRNIHI 299
F + K +P GH + W V+A+G DC + +
Sbjct: 56 GGAFLVLPLGKTGRVDKNVPL-----VCGHTAPVLDIAWCPHNDNVIASGSEDCT--VMV 108
Query: 300 WTPREAGAWQVDQKP---LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKS 356
W + G ++P L GHT V + W P + VL S D I +WD + T +
Sbjct: 109 WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD---VGTGA 165
Query: 357 CMLTLP-NAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVAT-FKHHT-AP 413
+LTL + H + + W+R LI + D + V + R KG+ VA + H
Sbjct: 166 AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR---KGTVVAEKDRPHEGTR 222
Query: 414 VTTVEWHPTESSTFASGGA---DDQIALWD 440
+ E +G + + Q+ALWD
Sbjct: 223 PVHAVFVS-EGKILTTGFSRMSERQVALWD 251
Score = 103 bits (260), Expect = 7e-24
Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 14/161 (8%)
Query: 287 VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRI 346
A+G + + G + + GHT V D+ W P V+AS S D ++ +
Sbjct: 51 CEASGGGAFLVLPLG--KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMV 108
Query: 347 WD----TRVINTKSCMLTLPNAHTSDVNVISWNRT-EPLIVSGGDDGCIHVWDLRRFKKG 401
W+ V+ + ++TL HT V +++W+ T + +++S G D I VWD+ G
Sbjct: 109 WEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV---GTG 164
Query: 402 SSVATFKH--HTAPVTTVEWHPTESSTFASGGADDQIALWD 440
++V T H + +V+W + + + D ++ + +
Sbjct: 165 AAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIE 204
Score = 91.3 bits (227), Expect = 1e-19
Identities = 40/267 (14%), Positives = 82/267 (30%), Gaps = 34/267 (12%)
Query: 191 VLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQLA-- 248
A+G + + G + + GHT D+ W + +A
Sbjct: 51 CEASGGGAFLVLPLG--KTGRVDKNVPLVCGHTAPVLDIAWCP--------HNDNVIASG 100
Query: 249 -EHNKKR------GKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWT 301
E G P+ + GH + W T VL + C I +W
Sbjct: 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160
Query: 302 PREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTL 361
GA V H +++ + WS + + D +R+ + R + +
Sbjct: 161 V-GTGA-AVLTLGPDVHPDTIYSVDWSRDGAL-ICTSCRDKRVRVIEPR---KGTVVAEK 214
Query: 362 PNAHTSDVNV-ISWNRTEPLIVSGGD---DGCIHVWDLRRFKKGSSVATFKH--HTAPVT 415
H V + ++ +G + + +WD + + + ++ V
Sbjct: 215 DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK---HLEEPLSLQELDTSSGVL 271
Query: 416 TVEWHPTESSTFASGGADDQIALWDLA 442
+ P + + G D I +++
Sbjct: 272 LPFFDPDTNIVYLCGKGDSSIRYFEIT 298
Score = 57.4 bits (139), Expect = 1e-08
Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 14/135 (10%)
Query: 350 RVINTKSCMLTLPNAHTS-DVNVISWN---RTEPLIVSGGDDGCIHVWDLRRFKKGSSVA 405
+ C + + T+ D + N SGG + + + +V
Sbjct: 17 QPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLG-KTGRVDKNVP 75
Query: 406 TFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLF 465
HTAPV + W P + ASG D + +W++ D + E P L
Sbjct: 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP---DGGLVLPLRE----PVITLE 128
Query: 466 IHLGQKEIKELHWHP 480
H K + + WHP
Sbjct: 129 GH--TKRVGIVAWHP 141
Score = 53.9 bits (130), Expect = 1e-07
Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 18/166 (10%)
Query: 287 VLATGDCK---RNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLS 343
+L TG + R + +W + + + ++ V + P V D S
Sbjct: 234 ILTTGFSRMSERQVALWDTKHLE--EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291
Query: 344 IRIWDTRVINTKSCMLTLPNAHTSDVNV--ISWNRTEPLIVSGGDDGCIHVWDLRRFKKG 401
IR ++ I +++ L + +S + + + L V+ + + L K
Sbjct: 292 IRYFE---ITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARF--YKLHERKCE 346
Query: 402 SSVATFKHHTAPVTTVEWHPTESSTFAS------GGADDQIALWDL 441
T + + PT A GG D L L
Sbjct: 347 PIAMTVPRKSDLFQEDLYPPTAGPDPALTAEEWLGGRDAGPLLISL 392
Score = 44.7 bits (106), Expect = 8e-05
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 703 VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
A+G + + G + + GHT V D+ W P V+AS S D + +
Sbjct: 51 CEASGGGAFLVLPLG--KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMV 108
Score = 43.9 bits (104), Expect = 2e-04
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 703 VLATG--DCKRNIHIWTPREAGAWQVDQKP---LVGHTNSVEDLQWSPGEKRVLASCSVD 757
V+A+G DC + +W + G ++P L GHT V + W P + VL S D
Sbjct: 96 VIASGSEDCT--VMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD 153
Query: 758 RSNRI 762
+
Sbjct: 154 NVILV 158
Score = 40.1 bits (94), Expect = 0.002
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 20/129 (15%)
Query: 650 FSFSGHLTEGFAMDWSSTEPG-VLATGDCKRNIHIWTPRE-----------AGAWSVYLY 697
H +++DWS G ++ T + + + PR+ G V+
Sbjct: 170 LGPDVHPDTIYSVDWSRD--GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV 227
Query: 698 TNRFG-VLATGDCK---RNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLAS 753
G +L TG + R + +W + + + ++ V + P V
Sbjct: 228 FVSEGKILTTGFSRMSERQVALWDTKHLE--EPLSLQELDTSSGVLLPFFDPDTNIVYLC 285
Query: 754 CSVDRSNRI 762
D S R
Sbjct: 286 GKGDSSIRY 294
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 106 bits (267), Expect = 3e-25
Identities = 53/277 (19%), Positives = 89/277 (32%), Gaps = 48/277 (17%)
Query: 192 LATGDCKRNIHIW---TPREAGAWQVDQKPLGGHTNSAEDLQWS-----------DLKTA 237
LA G + IW + + GH N + + WS D K+
Sbjct: 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD-KSV 131
Query: 238 ----LQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDC 293
+ ++ + H + + W +E +LA+
Sbjct: 132 WIWETDESGEEYEC-----------------ISVLQEHSQDVKHVIWHPSE-ALLASSSY 173
Query: 294 KRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRIWDTRVI 352
+ IW W+ L GH +V + L S S D ++R+W
Sbjct: 174 DDTVRIWKD-YDDDWECVA-VLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231
Query: 353 N-----TKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFK-KGSSVAT 406
+ C LP+ H V ++W LI S G DG + V++ + K +
Sbjct: 232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA 290
Query: 407 FKHHTAPVTTVEWH-PTESSTFASGGADDQIALWDLA 442
H + V+W + A+GG D + W L
Sbjct: 291 LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327
Score = 104 bits (261), Expect = 2e-24
Identities = 66/290 (22%), Positives = 103/290 (35%), Gaps = 37/290 (12%)
Query: 171 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQ 230
S + + ++ D+S G+LATG R I + + + +D H + +
Sbjct: 9 SLKLYKEKIWSFDFS---QGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVA 65
Query: 231 WS-DLKTAL-----QTV---DDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWS 281
W TV K+ L GH E + WS
Sbjct: 66 WRPHTSLLAAGSFDSTVSIWA---------KEESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 282 STEPG-VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSV 340
+ G LAT +++ IW E+G L H+ V+ + W P E LAS S
Sbjct: 117 ND--GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL-LASSSY 173
Query: 341 DLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNR--TEPLIVSGGDDGCIHVWDL--- 395
D ++RIW + C+ L N H V +++ + SG DD + VW
Sbjct: 174 DDTVRIWKDY-DDDWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231
Query: 396 --RRFKKGSSVAT-FKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
++ A H V V W AS GAD +A+++
Sbjct: 232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFN--GLIASVGADGVLAVYEEV 279
Score = 90.3 bits (225), Expect = 8e-20
Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 10/135 (7%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVIN-TKSCMLTLPNAHTSDVNV 371
K L + + +S +LA+ S D I++ + + T +L AH +
Sbjct: 8 KSLKLYKEKIWSFDFSQ---GILATGSTDRKIKLVSVKYDDFTLIDVLDE-TAHKKAIRS 63
Query: 372 ISWNRTEPLIVSGGDDGCIHVWDL----RRFKKGSSVATFKHHTAPVTTVEWHPTESSTF 427
++W L+ +G D + +W R + +A + H V V W
Sbjct: 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYL 122
Query: 428 ASGGADDQIALWDLA 442
A+ D + +W+
Sbjct: 123 ATCSRDKSVWIWETD 137
Score = 43.0 bits (102), Expect = 3e-04
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
LA+ + IW W+ L GH +V + L S S D + R+
Sbjct: 168 LASSSYDDTVRIWKD-YDDDWECVA-VLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225
Score = 41.8 bits (99), Expect = 6e-04
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSN 760
LA G + IW + + GH N V+ + WS LA+CS D+S
Sbjct: 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY-LATCSRDKSV 131
Query: 761 RI 762
I
Sbjct: 132 WI 133
Score = 39.9 bits (94), Expect = 0.002
Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 702 GVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQW-SPGEKRVLASCSVDRSN 760
G++A+ + ++ + ++ L + ++W K +LA+ D
Sbjct: 262 GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIV 321
Query: 761 RI 762
Sbjct: 322 NF 323
Score = 39.1 bits (92), Expect = 0.005
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
LAT +++ IW E+G L H+ V+ + W P E LAS S D + RI
Sbjct: 122 LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL-LASSSYDDTVRI 179
Score = 37.9 bits (89), Expect = 0.009
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
LATG R I + + + +D H ++ + W P LA+ S D + I
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSL-LAAGSFDSTVSI 84
Score = 37.6 bits (88), Expect = 0.012
Identities = 6/44 (13%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 399 KKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ + + K + + + ++ A+G D +I L +
Sbjct: 2 ASINLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVK 42
Score = 34.9 bits (81), Expect = 0.091
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 7/68 (10%)
Query: 700 RFGVLATGDCKRNIHIW-----TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASC 754
L +G + +W + W + H V ++ W +AS
Sbjct: 210 GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGL--IASV 267
Query: 755 SVDRSNRI 762
D +
Sbjct: 268 GADGVLAV 275
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 106 bits (267), Expect = 7e-25
Identities = 45/280 (16%), Positives = 74/280 (26%), Gaps = 60/280 (21%)
Query: 169 LFSFSGHLTEGFAMDWSSTEPG-VLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAE 227
+ + H ++ W+ E G +L + + +E G + H
Sbjct: 94 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVN 151
Query: 228 DLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGV 287
W+ P + E + G
Sbjct: 152 SASWA-----------PATIEEDGEHNGTKES--------------------------RK 174
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP--GEKRVLASCSVDLSIR 345
TG + IW V + L GH++ V D+ WSP + LAS S D +
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234
Query: 346 IWDTRVINTKSCMLTL--PNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSS 403
IW TL + SW+ + ++ G D + +W
Sbjct: 235 IWTQDN-EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK--------- 284
Query: 404 VATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAV 443
+ P V SGG +D
Sbjct: 285 -ENLEGKWEPAGEV-----HQGGGGSGGGGATSKEFDGPC 318
Score = 103 bits (258), Expect = 8e-24
Identities = 43/192 (22%), Positives = 71/192 (36%), Gaps = 26/192 (13%)
Query: 280 WSSTEPG-VLATG--DCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK-RVL 335
W+ + G +LA+ D K + IW +E H+ SV +QW+P E +L
Sbjct: 63 WAHPKFGTILASCSYDGK--VLIW--KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL 118
Query: 336 ASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEP-------------LIV 382
S D + + + + N + + + +AH VN SW V
Sbjct: 119 LVASSDGKVSVVEFKE-NGTTSPIII-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFV 176
Query: 383 SGGDDGCIHVWDLRR-FKKGSSVATFKHHTAPVTTVEWHP--TESSTFASGGADDQIALW 439
+GG D + +W + +T + H+ V V W P S AS D +W
Sbjct: 177 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
Query: 440 DLAVERDSEIEQ 451
E+ +
Sbjct: 237 TQDNEQGPWKKT 248
Score = 95.5 bits (238), Expect = 3e-21
Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 20/170 (11%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK-RVLASCSVDLSIRI 346
LAT + I I+ E ++ L GH V + W+ + +LASCS D + I
Sbjct: 26 LATCSSDKTIKIFE-VEGETHKL-IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83
Query: 347 WDTRVINTKSCMLTLPNAHTSDVNVISW--NRTEPLIVSGGDDGCIHVWDLRRFKKGSSV 404
W S + H++ VN + W + PL++ DG + V + + +S
Sbjct: 84 WKEEN-GRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE-NGTTSP 140
Query: 405 ATFKHHTAPVTTVEWHPTESS------------TFASGGADDQIALWDLA 442
H V + W P F +GGAD+ + +W
Sbjct: 141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 190
Score = 93.9 bits (234), Expect = 1e-20
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISW 374
H + D KR LA+CS D +I+I++ T + TL H V + W
Sbjct: 7 ANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVE-GETHKLIDTL-TGHEGPVWRVDW 63
Query: 375 NRTEP--LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTES-STFASGG 431
+ ++ S DG + +W + S +A H+A V +V+W P E
Sbjct: 64 AHPKFGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS 122
Query: 432 ADDQIALWDLA 442
+D ++++ +
Sbjct: 123 SDGKVSVVEFK 133
Score = 73.9 bits (182), Expect = 5e-14
Identities = 41/294 (13%), Positives = 72/294 (24%), Gaps = 70/294 (23%)
Query: 171 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQ 230
S++ E + E TG + IW V + L GH++ D+
Sbjct: 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 213
Query: 231 WSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLAT 290
WS LA+
Sbjct: 214 WS-----------------PTVLLRS------------------------------YLAS 226
Query: 291 GDCKRNIHIWTPR-EAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRIWD 348
R IWT E G W+ + + WS G VLA D + +W
Sbjct: 227 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG--NVLALSGGDNKVTLWK 284
Query: 349 TRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFK 408
+ + H SGG +D + +
Sbjct: 285 ENLEGKWEPAGEV---HQGGG------------GSGGGGATSKEFDG---PCQNEIDLLF 326
Query: 409 HHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQ 462
+ F + + + + + +D + + +K LP++
Sbjct: 327 SECNDEIDNAKLIMKERRFTASYTFAKFSTGSMLLTKDI-VGKSGVSIKRLPTE 379
Score = 49.2 bits (118), Expect = 3e-06
Identities = 35/180 (19%), Positives = 54/180 (30%), Gaps = 51/180 (28%)
Query: 611 GKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPG 670
GKV IW + G+ I + H ++ W+ E G
Sbjct: 79 GKVLIWKEEN------------------GRWSQIAV-----HAVHSASVNSVQWAPHEYG 115
Query: 671 -VLATGDCKRNIHIWTPREAG-----------------AWSVYLYTNRFGV--------L 704
+L + + +E G +W+
Sbjct: 116 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 175
Query: 705 ATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP--GEKRVLASCSVDRSNRI 762
TG + IW V + L GH++ V D+ WSP + LAS S DR+ I
Sbjct: 176 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 235
Score = 40.8 bits (96), Expect = 0.001
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK-RVLASCSVDRSNRI 762
LAT + I I+ E ++ L GH V + W+ + +LASCS D I
Sbjct: 26 LATCSSDKTIKIFE-VEGETHKL-IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83
Score = 36.9 bits (86), Expect = 0.021
Identities = 26/133 (19%), Positives = 37/133 (27%), Gaps = 25/133 (18%)
Query: 651 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAG-------------------A 691
S++ E + E TG + IW A
Sbjct: 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 213
Query: 692 WSVYLYTNRFGVLATGDCKRNIHIWTPR-EAGAWQVDQKPLVGHTNSVEDLQWSP-GEKR 749
WS + + LA+ R IWT E G W+ + + WS G
Sbjct: 214 WSPTVLLRSY--LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG--N 269
Query: 750 VLASCSVDRSNRI 762
VLA D +
Sbjct: 270 VLALSGGDNKVTL 282
Score = 36.1 bits (84), Expect = 0.041
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 731 LVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
H + D KR LA+CS D++ +I
Sbjct: 7 ANAHNELIHDAVLDYYGKR-LATCSSDKTIKI 37
Score = 33.4 bits (77), Expect = 0.26
Identities = 21/123 (17%), Positives = 30/123 (24%), Gaps = 15/123 (12%)
Query: 641 GPGIPTPPLFSFSGHLTEGFAMDWSSTEPG-VLATGDCKRNIHIWTPREAGAWSVYLYTN 699
G L + WS + G VLA + +W G W
Sbjct: 241 EQGPWKKTLLKEEKFPDVLWRASWSLS--GNVLALSGGDNKVTLWKENLEGKWEP-AGEV 297
Query: 700 RFGVLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCS 755
G +G + E L N D E+R AS +
Sbjct: 298 HQGGGGSGGGGATSKEFDGPCQNE-------IDLLFSECNDEIDNAKLIMKERRFTASYT 350
Query: 756 VDR 758
+
Sbjct: 351 FAK 353
Score = 33.4 bits (77), Expect = 0.30
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 401 GSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
GS V H + A+ +D I ++++
Sbjct: 1 GSMVVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEV 40
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 104 bits (262), Expect = 8e-25
Identities = 46/205 (22%), Positives = 77/205 (37%), Gaps = 26/205 (12%)
Query: 267 SFSGHLTEGFAMDWSSTEPG-VLATG--DCKRNIHIWTPREAGAWQVDQKPLVGHTNSVE 323
+ +GH + +DW+ + G +LA+ D K + IW +E H+ SV
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGK--VMIW--KEENGRWSQIAVHAVHSASVN 103
Query: 324 DLQWSPGEK-RVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEP--- 379
+QW+P E +L S D + + + + T + + +AH VN SW
Sbjct: 104 SVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-SPIII-DAHAIGVNSASWAPATIEED 161
Query: 380 ----------LIVSGGDDGCIHVWDLRR-FKKGSSVATFKHHTAPVTTVEWHP--TESST 426
V+GG D + +W + +T + H+ V V W P S
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 427 FASGGADDQIALWDLAVERDSEIEQ 451
AS D +W E+ +
Sbjct: 222 MASVSQDRTCIIWTQDNEQGPWKKT 246
Score = 95.0 bits (237), Expect = 2e-21
Identities = 46/283 (16%), Positives = 86/283 (30%), Gaps = 50/283 (17%)
Query: 192 LATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPF--QLAE 249
+AT + I I+ E ++ L GH + W+ F LA
Sbjct: 24 MATCSSDKTIKIFE-VEGETHKL-IDTLTGHEGPVWRVDWAH---------PKFGTILAS 72
Query: 250 ---------HNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPG-VLATGDCKRNIHI 299
++ G+ I + H ++ W+ E G +L + +
Sbjct: 73 CSYDGKVMIWKEENGRWSQIAV-----HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127
Query: 300 WTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK------------RVLASCSVDLSIRIW 347
+E G + H V W+P R + D ++IW
Sbjct: 128 VEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Query: 348 DTRV-INTKSCMLTLPNAHTSDVNVISWNRTEP---LIVSGGDDGCIHVWDL--RRFKKG 401
T TL H+ V ++W+ T + S D +W +
Sbjct: 186 KYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK 244
Query: 402 SSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVE 444
++ + + W + + A G D+++ LW +E
Sbjct: 245 KTLLKEEKFPDVLWRASWSLS-GNVLALSGGDNKVTLWKENLE 286
Score = 93.8 bits (234), Expect = 4e-21
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISW 374
H + D KR +A+CS D +I+I++ T + TL H V + W
Sbjct: 5 ANAHNEMIHDAVMDYYGKR-MATCSSDKTIKIFEVEG-ETHKLIDTL-TGHEGPVWRVDW 61
Query: 375 NRTEP--LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTES-STFASGG 431
+ ++ S DG + +W + S +A H+A V +V+W P E
Sbjct: 62 AHPKFGTILASCSYDGKVMIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVAS 120
Query: 432 ADDQIALWDLA 442
+D ++++ +
Sbjct: 121 SDGKVSVVEFK 131
Score = 90.8 bits (226), Expect = 4e-20
Identities = 38/231 (16%), Positives = 66/231 (28%), Gaps = 45/231 (19%)
Query: 169 LFSFSGHLTEGFAMDWSSTEPG-VLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAE 227
+ + H ++ W+ E G +L + + +E G + H
Sbjct: 92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVN 149
Query: 228 DLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGV 287
W+ P + E + G
Sbjct: 150 SASWA-----------PATIEEDGEHNGTKES--------------------------RK 172
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP--GEKRVLASCSVDLSIR 345
TG + IW V + L GH++ V D+ WSP + +AS S D +
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232
Query: 346 IWDTRVINTKSCMLTL--PNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWD 394
IW TL + SW+ + ++ G D + +W
Sbjct: 233 IWTQDN-EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282
Score = 52.6 bits (127), Expect = 2e-07
Identities = 29/193 (15%), Positives = 46/193 (23%), Gaps = 51/193 (26%)
Query: 171 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQ 230
S++ E + E TG + IW V + L GH++ D+
Sbjct: 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211
Query: 231 WSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLAT 290
WS +A+
Sbjct: 212 WS-----------------PTVLLRS------------------------------YMAS 224
Query: 291 GDCKRNIHIWTPREA-GAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRIWD 348
R IWT G W+ + + WS G VLA D + +W
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG--NVLALSGGDNKVTLWK 282
Query: 349 TRVINTKSCMLTL 361
+ +
Sbjct: 283 ENLEGKWEPAGEV 295
Score = 48.4 bits (116), Expect = 4e-06
Identities = 34/180 (18%), Positives = 54/180 (30%), Gaps = 51/180 (28%)
Query: 611 GKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPG 670
GKV IW + G+ I + H ++ W+ E G
Sbjct: 77 GKVMIWKEEN------------------GRWSQIAV-----HAVHSASVNSVQWAPHEYG 113
Query: 671 -VLATGDCKRNIHIWTPREAG-----------------AWSVYLYTNRFGV--------L 704
+L + + +E G +W+
Sbjct: 114 PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173
Query: 705 ATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP--GEKRVLASCSVDRSNRI 762
TG + IW V + L GH++ V D+ WSP + +AS S DR+ I
Sbjct: 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII 233
Score = 39.1 bits (92), Expect = 0.004
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK-RVLASCSVDRSNRI 762
+AT + I I+ E ++ L GH V + W+ + +LASCS D I
Sbjct: 24 MATCSSDKTIKIFE-VEGETHKL-IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81
Score = 38.4 bits (90), Expect = 0.007
Identities = 30/175 (17%), Positives = 45/175 (25%), Gaps = 40/175 (22%)
Query: 611 GKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFS--FSGHLTEGFAMDWSSTE 668
GKV + + K T H + S ++ E + E
Sbjct: 123 GKVSVVEFKENGTTSPIIID--AH-----------AIGVNSASWAPATIEEDGEHNGTKE 169
Query: 669 PGVLATGDCKRNIHIWTPREAG-------------------AWSVYLYTNRFGVLATGDC 709
TG + IW AWS + + +A+
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY--MASVSQ 227
Query: 710 KRNIHIWTPREA-GAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
R IWT G W+ + + WS G VLA D +
Sbjct: 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG--NVLALSGGDNKVTL 280
Score = 34.9 bits (81), Expect = 0.080
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 731 LVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
H + D KR +A+CS D++ +I
Sbjct: 5 ANAHNEMIHDAVMDYYGKR-MATCSSDKTIKI 35
Score = 31.8 bits (73), Expect = 0.78
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 404 VATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
V H + A+ +D I ++++
Sbjct: 2 VVIANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEV 38
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 106 bits (266), Expect = 2e-24
Identities = 28/176 (15%), Positives = 63/176 (35%), Gaps = 10/176 (5%)
Query: 268 FSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQW 327
+ ++ W T P +A G +I +W +G S+ L++
Sbjct: 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF--IKGIGAGGSITGLKF 172
Query: 328 SPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP-NAHTSDVNVISWNRTEPLIVSGGD 386
+P + S++ + R+ D + + + + + ++V+G +
Sbjct: 173 NPLNTNQFYASSMEGTTRLQD---FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN 229
Query: 387 DGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
G + + ++ G + + H VT V +P A+ D + +WDL
Sbjct: 230 VGNVILLNM----DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
Score = 93.6 bits (233), Expect = 3e-20
Identities = 47/301 (15%), Positives = 86/301 (28%), Gaps = 59/301 (19%)
Query: 172 FSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTN------- 224
+ ++ W T P +A G +I +W G
Sbjct: 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF--IKGIGAGGSITGLKF 172
Query: 225 SAEDLQW----SDLKTA-LQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMD 279
+ + S T LQ G S ++D
Sbjct: 173 NPLNTNQFYASSMEGTTRLQDFK----------------GNILRVFASSDTINIWFCSLD 216
Query: 280 WSSTEPG-VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASC 338
S++ ++ TGD N+ + G + L H V + +P LA+
Sbjct: 217 VSAS--SRMVVTGDNVGNVILLNMD--GK---ELWNLRMHKKKVTHVALNPCCDWFLATA 269
Query: 339 SVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRF 398
SVD +++IWD R + K+ L H VN ++ +++ I V+
Sbjct: 270 SVDQTVKIWDLRQVRGKASFLYSL-PHRHPVNAACFSPDGARLLTTDQKSEIRVYSA--- 325
Query: 399 KKGSSVATFKHHTAP------VTTVEWHPTES----------STFASGGADDQ-IALWDL 441
+ H WHP + + + + + I ++D
Sbjct: 326 SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDG 385
Query: 442 A 442
Sbjct: 386 N 386
Score = 85.9 bits (213), Expect = 8e-18
Identities = 18/143 (12%), Positives = 40/143 (27%), Gaps = 17/143 (11%)
Query: 308 WQVD----QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPN 363
+D + L W P +A S I +W+ K +
Sbjct: 104 HTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWN---FGIKDKPTFIKG 160
Query: 364 A-HTSDVNVISWNRTEP-LIVSGGDDGCIHVWDLRRFKKGSSVATFKHH---TAPVTTVE 418
+ + +N + +G + D KG+ + F +++
Sbjct: 161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF----KGNILRVFASSDTINIWFCSLD 216
Query: 419 WHPTESSTFASGGADDQIALWDL 441
+ S +G + L ++
Sbjct: 217 VSAS-SRMVVTGDNVGNVILLNM 238
Score = 75.5 bits (186), Expect = 2e-14
Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 33/200 (16%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLV--GHTNS 321
L++ H + + + LAT + + IW + + L H +
Sbjct: 242 ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIW---DLRQVRGKASFLYSLPHRHP 298
Query: 322 VEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTL---PNAHTSDVNVIS--WNR 376
V +SP R L + IR++ + C L L P+ H + I W+
Sbjct: 299 VNAACFSPDGAR-LLTTDQKSEIRVYSA---SQWDCPLGLIPHPHRHFQHLTPIKAAWHP 354
Query: 377 TEPLIVSG------------GDDGCIHVWDLRRFKKGSSVAT-FKHHTAPVTTV-EWHPT 422
LIV G + I V+D G + + ++ ++++ E++P
Sbjct: 355 RYNLIVVGRYPDPNFKSCTPYELRTIDVFDG---NSGKMMCQLYDPESSGISSLNEFNPM 411
Query: 423 ESSTFASGGADDQIALWDLA 442
T AS I +W
Sbjct: 412 -GDTLASAM-GYHILIWSQQ 429
Score = 68.9 bits (169), Expect = 2e-12
Identities = 15/113 (13%), Positives = 36/113 (31%), Gaps = 6/113 (5%)
Query: 334 VLASCSVDLSIRIWDT---RVINTKSCMLTLPNAHTSDVNVISWNRTEP-LIVSGGDDGC 389
L S + +++ + ++W+ T P + G G
Sbjct: 85 KLGRASWPSVQQGLQQSFLHTLDSYRILQKA-APFDRRATSLAWHPTHPSTVAVGSKGGD 143
Query: 390 IHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
I +W+ K + +T ++++P ++ F + + L D
Sbjct: 144 IMLWNFGI-KDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195
Score = 53.5 bits (129), Expect = 2e-07
Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 21/135 (15%)
Query: 317 GHTNSVEDLQWSPGEKRVLA----SCSVDLSIRIWDTR-----VINTKSCMLTLPNAHTS 367
+ S L+ P K++ A S +W + +S + TL H
Sbjct: 28 RNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGPQILPPCRSIVRTL---HQH 84
Query: 368 DVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTF 427
+ SW + + + L + T++ WHPT ST
Sbjct: 85 KLGRASWPSVQQGLQQ------SFLHTL---DSYRILQKAAPFDRRATSLAWHPTHPSTV 135
Query: 428 ASGGADDQIALWDLA 442
A G I LW+
Sbjct: 136 AVGSKGGDIMLWNFG 150
Score = 42.8 bits (101), Expect = 4e-04
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ TGD N+ + G + L H V + +P LA+ SVD++ +I
Sbjct: 224 VVTGDNVGNVILLNMD--GK---ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKI 277
Score = 39.3 bits (92), Expect = 0.004
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+A G +I +W +G S+ L+++P + S++ + R+
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTF--IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191
Score = 38.1 bits (89), Expect = 0.011
Identities = 10/98 (10%), Positives = 26/98 (26%), Gaps = 3/98 (3%)
Query: 665 SSTEPGVLATGDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAW 724
S I P + + L+ ++ G + ++ + ++
Sbjct: 52 PSRRCDSDCLWVGLAGPQILPPCRSIVRT--LHQHKLGRASWPSVQQGLQQSFLHTLDSY 109
Query: 725 QVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
++ + L W P +A S +
Sbjct: 110 RI-LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIML 146
Score = 32.0 bits (73), Expect = 0.85
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 16/103 (15%)
Query: 672 LATGDCKRNIHIWTPR----------EAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREA 721
+ TGD N+ + + V L LAT + + IW +
Sbjct: 224 VVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIW---DL 280
Query: 722 GAWQVDQKPLV--GHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ L H + V +SP R L + R+
Sbjct: 281 RQVRGKASFLYSLPHRHPVNAACFSPDGAR-LLTTDQKSEIRV 322
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 102 bits (257), Expect = 6e-24
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
K + GH + D+ WS L S S D +++IWD +++ C+ TL H++ V
Sbjct: 59 KTISGHKLGISDVAWSSDSNL-LVSASDDKTLKIWD---VSSGKCLKTL-KGHSNYVFCC 113
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
++N LIVSG D + +WD++ G + T H+ PV+ V ++ + S S
Sbjct: 114 NFNPQSNLIVSGSFDESVRIWDVK---TGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSY 169
Query: 433 DDQIALWDLA 442
D +WD A
Sbjct: 170 DGLCRIWDTA 179
Score = 96.4 bits (241), Expect = 6e-22
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 9/132 (6%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
K L H++ V + ++ + S S D RIWDT + C+ TL + V+ +
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTA---SGQCLKTLIDDDNPPVSFV 198
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWH--PTESSTFASG 430
++ I++ D + +WD KG + T+ H + + T SG
Sbjct: 199 KFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 431 GADDQIALWDLA 442
D+ + +W+L
Sbjct: 256 SEDNLVYIWNLQ 267
Score = 94.4 bits (236), Expect = 3e-21
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
L GHT +V +++SP + LAS S D I+IW T+ + H ++ +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGA---YDGKFEKTI-SGHKLGISDV 71
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
+W+ L+VS DD + +WD+ G + T K H+ V ++P +S+ SG
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSF 127
Query: 433 DDQIALWDLA 442
D+ + +WD+
Sbjct: 128 DESVRIWDVK 137
Score = 92.9 bits (232), Expect = 1e-20
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 312 QKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVN 370
+ + V +++SP G + + + ++D ++++WD + C+ T H ++
Sbjct: 185 KTLIDDDNPPVSFVKFSPNG--KYILAATLDNTLKLWDY---SKGKCLKTY-TGHKNEKY 238
Query: 371 VISWNRTEP---LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTF 427
I N + IVSG +D +++W+L + V + HT V + HPT +
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQKLQGHTDVVISTACHPT-ENII 294
Query: 428 ASGGA--DDQIALWDL 441
AS D I LW
Sbjct: 295 ASAALENDKTIKLWKS 310
Score = 43.2 bits (103), Expect = 2e-04
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPG--VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNS 321
L +++GH E + + + + G + +G ++IW ++ + L GHT+
Sbjct: 226 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---NLQTKEI-VQKLQGHTDV 281
Query: 322 VEDLQWSPGEKRVLASCSV--DLSIRIWDT 349
V P E +AS ++ D +I++W +
Sbjct: 282 VISTACHPTENI-IASAALENDKTIKLWKS 310
Score = 36.7 bits (86), Expect = 0.024
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
K + GH + D+ WS L S S D++ +I
Sbjct: 59 KTISGHKLGISDVAWSSDSNL-LVSASDDKTLKI 91
Score = 35.5 bits (83), Expect = 0.057
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 401 GSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ T HT V++V++ P AS AD I +W
Sbjct: 13 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAY 53
Score = 33.2 bits (77), Expect = 0.26
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
K L H++ V + ++ + S S D RI
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRI 175
Score = 32.4 bits (75), Expect = 0.53
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
K L GH+N V ++P + S S D S RI
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRI 133
Score = 32.4 bits (75), Expect = 0.58
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L GHT +V +++SP + LAS S D+ +I
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEW-LASSSADKLIKI 49
Score = 29.0 bits (66), Expect = 6.0
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSV--DRSNRI 762
+ L GHT+ V P E +AS ++ D++ ++
Sbjct: 273 QKLQGHTDVVISTACHPTENI-IASAALENDKTIKL 307
Score = 29.0 bits (66), Expect = 7.2
Identities = 5/36 (13%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 728 QKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
+ + V +++SP G + + + ++D + ++
Sbjct: 185 KTLIDDDNPPVSFVKFSPNG--KYILAATLDNTLKL 218
Score = 28.6 bits (65), Expect = 9.1
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 729 KPLVGHTNSVEDLQWS---PGEKRVLASCSVDRSNRI 762
K GH N + + G K + S S D I
Sbjct: 228 KTYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYI 263
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 102 bits (256), Expect = 2e-23
Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 15/193 (7%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
+A +HI+ + W L H V + W+P R + +C D + +W
Sbjct: 23 IAICPNNHEVHIYE-KSGNKWVQVH-ELKEHNGQVTGVDWAPDSNR-IVTCGTDRNAYVW 79
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLR-RFKKGSSVAT 406
+ T L + + W E G I +
Sbjct: 80 TLKG-RTWKPTLVI-LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 137
Query: 407 FKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFI 466
K + V +++WHP S A+G D + ++ ++ E +P
Sbjct: 138 KKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF----- 191
Query: 467 HLGQKEIKELHWH 479
+ + E
Sbjct: 192 ---GELMFESSSS 201
Score = 97.7 bits (244), Expect = 6e-22
Identities = 35/173 (20%), Positives = 56/173 (32%), Gaps = 22/173 (12%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
A G R I I + W V + ++V L W P LA+ S D RI+
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL-LAAGSCDFKCRIF 169
Query: 348 DTRVINTKS---------------CMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHV 392
+ + M + V+ + ++ + D + +
Sbjct: 170 SAYIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWVHGVCFSANGSRVAWVSHDSTVCL 228
Query: 393 WDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVER 445
D K +VAT T P+ V + ESS A+G D L+
Sbjct: 229 ADA---DKKMAVATLASETLPLLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAA 276
Score = 84.6 bits (210), Expect = 1e-17
Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 7/131 (5%)
Query: 317 GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP-NAHTSDVNVISWN 375
+ W+ + +A C + + I++ + + H V + W
Sbjct: 6 FLVEPISCHAWNKDRTQ-IAICPNNHEVHIYE---KSGNKWVQVHELKEHNGQVTGVDWA 61
Query: 376 RTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQ 435
IV+ G D +VW L+ + V W P E FA G
Sbjct: 62 PDSNRIVTCGTDRNAYVWTLKG-RTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRV 119
Query: 436 IALWDLAVERD 446
I++ E D
Sbjct: 120 ISICYFEQEND 130
Score = 73.4 bits (181), Expect = 6e-14
Identities = 32/276 (11%), Positives = 67/276 (24%), Gaps = 51/276 (18%)
Query: 192 LATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWS------------------D 233
A G R I I + W V + ++ L W
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 170
Query: 234 LKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPG-VLATGD 292
G+ +F S + +S+ G +A
Sbjct: 171 AYIKEVEERPAPTPWGSKMPFGE-------LMFESSSSCGWVHGVCFSAN--GSRVAWVS 221
Query: 293 CKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT 349
+ + L T + + + E ++A+ D ++
Sbjct: 222 HDSTVCLADADKKMA-------VATLASETLPLLAVTFIT-ESSLVAAGH-DCFPVLFT- 271
Query: 350 RVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH 409
++ + L+ S D G+ + +
Sbjct: 272 --YDSAAGKLSF-GGRLDVPKQSSQRGLTARERFQNLDK--KASSEGSAAAGAGLDSL-- 324
Query: 410 HTAPVTTVEWHP---TESSTFASGGADDQIALWDLA 442
H V+ + + S F + G D +++WD+
Sbjct: 325 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360
Score = 42.2 bits (100), Expect = 5e-04
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+A +HI+ + W L H V + W+P R + +C DR+ +
Sbjct: 23 IAICPNNHEVHIYE-KSGNKWVQVH-ELKEHNGQVTGVDWAPDSNR-IVTCGTDRNAYV 78
Score = 41.5 bits (98), Expect = 9e-04
Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 23/108 (21%)
Query: 672 LATGDCKRNIHIWTPR-------------EAGAWSVYLYTNRF----GVLATGDCKRNIH 714
+ T RN ++WT + A V R+ A G R I
Sbjct: 67 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV-----RWAPNEKKFAVGSGSRVIS 121
Query: 715 IWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
I + W V + ++V L W P LA+ S D RI
Sbjct: 122 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL-LAAGSCDFKCRI 168
Score = 34.9 bits (81), Expect = 0.11
Identities = 4/38 (10%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 405 ATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
A P++ W+ + + A + ++ +++ +
Sbjct: 2 AYHSFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKS 38
Score = 30.3 bits (69), Expect = 2.9
Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 719 REAGAWQVDQKPLVGHTNSVEDLQWSPGEKRV---LASCSVDRSNRI 762
G+ H NSV + G K + +D I
Sbjct: 310 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI 356
Score = 29.1 bits (66), Expect = 5.7
Identities = 5/57 (8%), Positives = 14/57 (24%), Gaps = 11/57 (19%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVD 757
+A + + L T + + + E ++A+
Sbjct: 217 VAWVSHDSTVCLADADKKMA-------VATLASETLPLLAVTFIT-ESSLVAAGHDC 265
Score = 29.1 bits (66), Expect = 6.6
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
V + +S R +A S D + +
Sbjct: 196 FESSSSCGWVHGVCFSANGSR-VAWVSHDSTVCL 228
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 102 bits (257), Expect = 2e-23
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ L GHT+SV+D+ + K LASCS D++I++WD C+ T+ + H +V+ +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKL-LASCSADMTIKLWD---FQGFECIRTM-HGHDHNVSSV 198
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
S IVS D I +W++ + G V TF H V V + + + AS
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEV---QTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSN 254
Query: 433 DDQIALWDLA 442
D + +W +A
Sbjct: 255 DQTVRVWVVA 264
Score = 97.3 bits (243), Expect = 1e-21
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 27/148 (18%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRV-------------------LASCSVDLSIRIWDTRVIN 353
L H + VE + W+P L S S D +I++WD +
Sbjct: 270 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---S 326
Query: 354 TKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAP 413
T C++TL H + V + ++ I+S DD + VWD K + T H
Sbjct: 327 TGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY---KNKRCMKTLNAHEHF 382
Query: 414 VTTVEWHPTESSTFASGGADDQIALWDL 441
VT++++H T + +G D + +W+
Sbjct: 383 VTSLDFHKT-APYVVTGSVDQTVKVWEC 409
Score = 89.6 bits (223), Expect = 4e-19
Identities = 37/150 (24%), Positives = 54/150 (36%), Gaps = 29/150 (19%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
K GH V ++ + +ASCS D ++R+W + TK C L H V I
Sbjct: 228 KTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRVWV---VATKECKAEL-REHRHVVECI 282
Query: 373 SW--------------------NRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTA 412
SW + P ++SG D I +WD+ G + T H
Sbjct: 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST---GMCLMTLVGHDN 339
Query: 413 PVTTVEWHPTESSTFASGGADDQIALWDLA 442
V V +H S D + +WD
Sbjct: 340 WVRGVLFHSG-GKFILSCADDKTLRVWDYK 368
Score = 85.7 bits (213), Expect = 7e-18
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
LVGH N V + + G K + SC+ D ++R+WD K CM TL NAH V +
Sbjct: 332 MTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWD---YKNKRCMKTL-NAHEHFVTSL 386
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLR 396
+++T P +V+G D + VW+ R
Sbjct: 387 DFHKTAPYVVTGSVDQTVKVWECR 410
Score = 73.4 bits (181), Expect = 6e-14
Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 16/133 (12%)
Query: 312 QKPLVGHTNSVEDLQWSPGEKRV--LASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDV 369
QK ++ + + + ++ + W L + H S V
Sbjct: 62 QKKVMELESKL-----NEAKEEFTSGGPLGQKRDPKEWIP----RPPEKYAL-SGHRSPV 111
Query: 370 NVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFAS 429
+ ++ ++VS +D I VWD + G T K HT V + + + AS
Sbjct: 112 TRVIFHPVFSVMVSASEDATIKVWDY---ETGDFERTLKGHTDSVQDISFDHS-GKLLAS 167
Query: 430 GGADDQIALWDLA 442
AD I LWD
Sbjct: 168 CSADMTIKLWDFQ 180
Score = 38.0 bits (89), Expect = 0.012
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ L GHT+SV+D+ + K LASCS D + ++
Sbjct: 144 RTLKGHTDSVQDISFDHSGKL-LASCSADMTIKL 176
Score = 36.8 bits (86), Expect = 0.027
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
LVGH N V + + G K + SC+ D++ R+
Sbjct: 332 MTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRV 364
Score = 36.0 bits (84), Expect = 0.043
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
K GH V ++ + +ASCS D++ R+
Sbjct: 228 KTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRV 260
Score = 36.0 bits (84), Expect = 0.050
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
K L H + V L + + + SVD++ ++
Sbjct: 374 KTLNAHEHFVTSLDFHKTAPY-VVTGSVDQTVKV 406
Score = 34.1 bits (79), Expect = 0.15
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ + GH ++V + P + S S D++ ++
Sbjct: 186 RTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKM 218
Score = 32.6 bits (75), Expect = 0.50
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
KR+ W PR ++ L GH + V + + P + S S D + ++
Sbjct: 82 GGPLGQKRDPKEWIPRPP-----EKYALSGHRSPVTRVIFHPVFSV-MVSASEDATIKV 134
Score = 29.9 bits (68), Expect = 3.7
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRIGARRD 767
L H + VE + W+P E + S + +
Sbjct: 270 AELREHRHVVECISWAP-ESSYSSISEATGSETKKSGKP 307
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 101 bits (255), Expect = 2e-23
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQ--KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIR 345
+A G ++ + K + HTN + ++ + + + + S D +
Sbjct: 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCA 179
Query: 346 IWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEP--LIVSGGDDGCIHVWDLRRFKKGSS 403
+WD + + + + + H +DV + +E VSGG D VWD+R G
Sbjct: 180 LWD---VESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR---SGQC 232
Query: 404 VATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
V F+ H + V +V ++P+ FASG D L+DL
Sbjct: 233 VQAFETHESDVNSVRYYPS-GDAFASGSDDATCRLYDLR 270
Score = 94.5 bits (236), Expect = 5e-21
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 11/133 (8%)
Query: 313 KPLVGHTNSVEDLQWSPGEK-RVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNV 371
+ GH V L +P E S D +WD R + C+ H SDVN
Sbjct: 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR---SGQCVQAF-ETHESDVNS 245
Query: 372 ISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHH--TAPVTTVEWHPTESSTFAS 429
+ + + SG DD ++DLR VA + ++V++ + +
Sbjct: 246 VRYYPSGDAFASGSDDATCRLYDLR---ADREVAIYSKESIIFGASSVDFSLS-GRLLFA 301
Query: 430 GGADDQIALWDLA 442
G D I +WD+
Sbjct: 302 GYNDYTINVWDVL 314
Score = 93.0 bits (232), Expect = 2e-20
Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 20/181 (11%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPG-VLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHT 319
L SF GH + +D + +E G +G C + +W + + + H
Sbjct: 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-------VQAFETHE 240
Query: 320 NSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPN-AHTSDVNVISWNRTE 378
+ V +++ P AS S D + R++D R + + + + ++ +
Sbjct: 241 SDVNSVRYYPSGDA-FASGSDDATCRLYDLR---ADREVAIYSKESIIFGASSVDFSLSG 296
Query: 379 PLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIAL 438
L+ +G +D I+VWD+ KGS V+ H V+T+ P + + F SG D + +
Sbjct: 297 RLLFAGYNDYTINVWDV---LKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRV 352
Query: 439 W 439
W
Sbjct: 353 W 353
Score = 92.2 bits (230), Expect = 3e-20
Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 14/165 (8%)
Query: 286 GVLATGDCKRNIHIWTPREAG-----AWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSV 340
+ ++ + E ++ L GH N V + W ++R + S S
Sbjct: 26 KLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRR-IVSSSQ 84
Query: 341 DLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDL---RR 397
D + +WD+ T + + + V ++ + I GG D V+ L +
Sbjct: 85 DGKVIVWDS---FTTNKEHAVT-MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN 140
Query: 398 FKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ + HT ++ + + D ALWD+
Sbjct: 141 ENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVE 184
Score = 82.2 bits (204), Expect = 6e-17
Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 15/154 (9%)
Query: 314 PLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNA--------- 364
G + E L + ++ D + + L
Sbjct: 3 ATDGLHENETLASLKS-EAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK 61
Query: 365 -HTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTE 423
H + V + W + + IVS DG + VWD + V + P+
Sbjct: 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS---FTTNKEHAVTMPCTWVMACAYAPS- 117
Query: 424 SSTFASGGADDQIALWDLAVERDSEIEQREAELK 457
A GG D++ +++ L +++ + ++ +
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVA 151
Score = 35.2 bits (82), Expect = 0.072
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 11/62 (17%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSN 760
L G I++W L GH N V L+ SP S S D +
Sbjct: 299 LFAGYNDYTINVWDVLKGSRVS-------ILFGHENRVSTLRVSPDGTA-FCSGSWDHTL 350
Query: 761 RI 762
R+
Sbjct: 351 RV 352
Score = 34.8 bits (81), Expect = 0.11
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 702 GVLATGDCKRNIHIWTPREAG-----AWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSV 756
+ ++ + E ++ L GH N V + W ++R + S S
Sbjct: 26 KLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRR-IVSSSQ 84
Query: 757 DRSNRI 762
D +
Sbjct: 85 DGKVIV 90
Score = 34.4 bits (80), Expect = 0.13
Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQ--KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNR 761
+A G ++ + K + HTN + ++ + + + + S D +
Sbjct: 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCA 179
Query: 762 I 762
+
Sbjct: 180 L 180
Score = 33.3 bits (77), Expect = 0.26
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEK-RVLASCSVDRSNRI 762
+ GH V L +P E S D+ +
Sbjct: 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224
Score = 31.4 bits (72), Expect = 1.1
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSN 760
+G C + +W + + + H + V +++ P AS S D +
Sbjct: 213 FVSGGCDKKAMVWDMRSGQC-------VQAFETHESDVNSVRYYPSGDA-FASGSDDATC 264
Query: 761 RI 762
R+
Sbjct: 265 RL 266
Score = 28.7 bits (65), Expect = 8.7
Identities = 4/34 (11%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ V ++P +A +D +
Sbjct: 100 HAVTMPCTWVMACAYAPSGCA-IACGGLDNKCSV 132
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 100 bits (251), Expect = 4e-23
Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 313 KPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP-NAHTSDVN 370
+ VGHT V + +S R + S S D +I++W+T C T+ +H+ V+
Sbjct: 122 RRFVGHTKDVLSVAFSSDN--RQIVSGSRDKTIKLWNT----LGVCKYTVQDESHSEWVS 175
Query: 371 --VISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFA 428
S N + P+IVS G D + VW+L HT + TV P + S A
Sbjct: 176 CVRFSPNSSNPIIVSCGWDKLVKVWNL---ANCKLKTNHIGHTGYLNTVTVSP-DGSLCA 231
Query: 429 SGGADDQIALWDLA 442
SGG D Q LWDL
Sbjct: 232 SGGKDGQAMLWDLN 245
Score = 93.7 bits (234), Expect = 8e-21
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 7/155 (4%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
++G +++ + L GH V + +P ++ S S D +I +W
Sbjct: 7 HSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMW 66
Query: 348 D--TRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVA 405
N L H+ V+ + + +SG DG + +WDL G++
Sbjct: 67 KLTRDETNYGIPQRAL-RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL---TTGTTTR 122
Query: 406 TFKHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
F HT V +V + ++ SG D I LW+
Sbjct: 123 RFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN 156
Score = 85.6 bits (213), Expect = 3e-18
Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 14/156 (8%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRI 346
+ +G + I +W H+ V +++SP ++ SC D +++
Sbjct: 143 IVSGSRDKTIKLW---NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199
Query: 347 WDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVAT 406
W+ + HT +N ++ + L SGG DG +WDL +G + T
Sbjct: 200 WN---LANCKLKTNH-IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL---NEGKHLYT 252
Query: 407 FKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ + + P + + I +WDL
Sbjct: 253 LDGGD-IINALCFSP--NRYWLCAATGPSIKIWDLE 285
Score = 78.7 bits (195), Expect = 7e-16
Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 24/148 (16%)
Query: 308 WQVD----QKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP 362
W + + +GHT + + SP G + AS D +WD +N + TL
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSPDG--SLCASGGKDGQAMLWD---LNEGKHLYTL- 253
Query: 363 NAHTSDVNVISW--NRTEPLIVSGGDDGCIHVWDL------RRFKKGSSVATFKHHTAPV 414
+N + + NR + I +WDL K+ + K
Sbjct: 254 -DGGDIINALCFSPNRY---WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC 309
Query: 415 TTVEWHPTESSTFASGGADDQIALWDLA 442
T++ W + T +G D+ + +W +
Sbjct: 310 TSLAWSA-DGQTLFAGYTDNLVRVWQVT 336
Score = 71.4 bits (176), Expect = 2e-13
Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 6/114 (5%)
Query: 333 RVLASCSVDLSIRIWDTRVIN-TKSCMLTLPNAHTSDVNVISWNRTEP-LIVSGGDDGCI 390
+S + ++ ++ + TL H V I+ P +I+S D I
Sbjct: 5 HHHSSGVDLGTENLYFQSMMTEQMTLRGTL-KGHNGWVTQIATTPQFPDMILSASRDKTI 63
Query: 391 HVWDLRRFKK--GSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+W L R + G + H+ V+ V + SG D + LWDL
Sbjct: 64 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLT 116
Score = 41.7 bits (99), Expect = 7e-04
Identities = 9/62 (14%), Positives = 15/62 (24%), Gaps = 10/62 (16%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
L + +V L WS + L + D +R+W
Sbjct: 284 LEGKIIVDELK---------QEVISTSSKAEPPQCTSLAWSADGQT-LFAGYTDNLVRVW 333
Query: 348 DT 349
Sbjct: 334 QV 335
Score = 39.0 bits (92), Expect = 0.004
Identities = 9/59 (15%), Positives = 22/59 (37%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
++G +++ + L GH V + +P ++ S S D++ +
Sbjct: 7 HSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIM 65
Score = 34.8 bits (81), Expect = 0.11
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
+ +G + I +W H+ V +++SP ++ SC D+ ++
Sbjct: 143 IVSGSRDKTIKLW---NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199
Score = 33.2 bits (77), Expect = 0.33
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 704 LATGDCKRNIHIW-TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ + + I +W R+ + + Q+ L GH++ V D+ S + S S D + R+
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF-ALSGSWDGTLRL 112
Score = 31.7 bits (73), Expect = 0.85
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 729 KPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
+ VGHT V + +S R + S S D++ ++
Sbjct: 122 RRFVGHTKDVLSVAFSSDN--RQIVSGSRDKTIKL 154
Score = 31.3 bits (72), Expect = 1.2
Identities = 8/59 (13%), Positives = 13/59 (22%), Gaps = 10/59 (16%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L + +V L WS + L + D R+
Sbjct: 284 LEGKIIVDELK---------QEVISTSSKAEPPQCTSLAWSADGQT-LFAGYTDNLVRV 332
Score = 30.2 bits (69), Expect = 3.1
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 724 WQVD----QKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
W + + +GHT + + SP G + AS D +
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSPDG--SLCASGGKDGQAML 241
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 99 bits (250), Expect = 6e-23
Identities = 39/155 (25%), Positives = 62/155 (40%), Gaps = 10/155 (6%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
+A G I+ + + L GHT + ++ + + + S D + +W
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALW 169
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATF 407
D I T T HT DV +S L VSG D +WD+R +G TF
Sbjct: 170 D---IETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR---EGMCRQTF 222
Query: 408 KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
H + + + + P + FA+G D L+DL
Sbjct: 223 TGHESDINAICFFPN-GNAFATGSDDATCRLFDLR 256
Score = 93.7 bits (234), Expect = 7e-21
Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 19/157 (12%)
Query: 288 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSI 344
+G C + +W ++ GH + + + + P A+ S D +
Sbjct: 199 FVSGACDASAKLWDVREGMC-------RQTFTGHESDINAICFFPNGNA-FATGSDDATC 250
Query: 345 RIWDTRVINTKSCMLTLP-NAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSS 403
R++D R ++T + + +S++++ L+++G DD +VWD K
Sbjct: 251 RLFDLR---ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA---LKADR 304
Query: 404 VATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
H V+ + + A+G D + +W+
Sbjct: 305 AGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340
Score = 91.4 bits (228), Expect = 5e-20
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 11/132 (8%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
GHT V L +P + S + D S ++WD R C T H SD+N I
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRL-FVSGACDASAKLWDVR---EGMCRQTF-TGHESDINAI 232
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHH--TAPVTTVEWHPTESSTFASG 430
+ +G DD ++DLR + T+ H +T+V + + +G
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLR---ADQELMTYSHDNIICGITSVSFSKS-GRLLLAG 288
Query: 431 GADDQIALWDLA 442
D +WD
Sbjct: 289 YDDFNCNVWDAL 300
Score = 90.7 bits (226), Expect = 8e-20
Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 18/174 (10%)
Query: 270 GHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP 329
+ + +T + D I + T ++ L GH + + W
Sbjct: 16 NQIRDARKACADATLSQITNNIDPVGRIQMRT----------RRTLRGHLAKIYAMHWGT 65
Query: 330 GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGC 389
+ R+L S S D + IWD+ T + + +P +S V ++ + + GG D
Sbjct: 66 -DSRLLLSASQDGKLIIWDS---YTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 390 IHVWDLR-RFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+++L+ R HT ++ + + + D ALWD+
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIE 172
Score = 70.6 bits (174), Expect = 4e-13
Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 14/130 (10%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ L ++ + ++D RI TL H + + +
Sbjct: 12 EQLKNQIRDARKACADATLSQI--TNNIDPVGRIQMR-------TRRTL-RGHLAKIYAM 61
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
W L++S DG + +WD + V ++ V T + P+ + A GG
Sbjct: 62 HWGTDSRLLLSASQDGKLIIWDS---YTTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGL 117
Query: 433 DDQIALWDLA 442
D+ ++++L
Sbjct: 118 DNICSIYNLK 127
Score = 36.3 bits (85), Expect = 0.030
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSN 760
L G N ++W AG L GH N V L + +A+ S D
Sbjct: 285 LLAGYDDFNCNVWDALKADRAG-------VLAGHDNRVSCLGVTDDGMA-VATGSWDSFL 336
Query: 761 RI 762
+I
Sbjct: 337 KI 338
Score = 34.0 bits (79), Expect = 0.18
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ L GH + + W + R+L S S D I
Sbjct: 49 RTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLII 81
Score = 33.3 bits (77), Expect = 0.30
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSN 760
+G C + +W ++ GH + + + + P A+ S D +
Sbjct: 199 FVSGACDASAKLWDVREGMC-------RQTFTGHESDINAICFFPNGNA-FATGSDDATC 250
Query: 761 RI 762
R+
Sbjct: 251 RL 252
Score = 32.5 bits (75), Expect = 0.59
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
GHT V L +P + S + D S ++
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRL-FVSGACDASAKL 210
Score = 32.1 bits (74), Expect = 0.61
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+A G I+ + + L GHT + ++ + + + S D + +
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCAL 168
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 103 bits (257), Expect = 1e-22
Identities = 42/193 (21%), Positives = 68/193 (35%), Gaps = 28/193 (14%)
Query: 280 WSSTEPG-VLATG--DCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK-RVL 335
W+ + G +LA+ D K + IW +E H+ SV +QW+P E +L
Sbjct: 61 WAHPKFGTILASCSYDGK--VLIW--KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL 116
Query: 336 ASCSVDLSIRIWDTRVINTKSCMLTLP-NAHTSDVNVISWN-------------RTEPLI 381
S D + + + + +AH VN SW +
Sbjct: 117 LVASSDGKVSVVE---FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173
Query: 382 VSGGDDGCIHVWDLRR-FKKGSSVATFKHHTAPVTTVEWHP--TESSTFASGGADDQIAL 438
V+GG D + +W + +T + H+ V V W P S AS D +
Sbjct: 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 233
Query: 439 WDLAVERDSEIEQ 451
W E+ +
Sbjct: 234 WTQDNEQGPWKKT 246
Score = 100 bits (249), Expect = 9e-22
Identities = 45/277 (16%), Positives = 74/277 (26%), Gaps = 60/277 (21%)
Query: 169 LFSFSGHLTEGFAMDWSSTEPG-VLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAE 227
+ + H ++ W+ E G +L + + +E G + H
Sbjct: 92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVN 149
Query: 228 DLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGV 287
W+ P + E + G
Sbjct: 150 SASWA-----------PATIEEDGEHNGTKES--------------------------RK 172
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP--GEKRVLASCSVDLSIR 345
TG + IW V + L GH++ V D+ WSP + LAS S D +
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 346 IWDTRVINTKSCMLTL--PNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSS 403
IW TL + SW+ + ++ G D + +W
Sbjct: 233 IWTQDN-EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK--------- 282
Query: 404 VATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
+ P V SGG +D
Sbjct: 283 -ENLEGKWEPAGEVHQGG-----GGSGGGGATSKEFD 313
Score = 93.1 bits (231), Expect = 1e-19
Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 20/170 (11%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK-RVLASCSVDLSIRI 346
LAT + I I+ E ++ L GH V + W+ + +LASCS D + I
Sbjct: 24 LATCSSDKTIKIFE-VEGETHKL-IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81
Query: 347 WDTRVINTKSCMLTLPNAHTSDVNVISW--NRTEPLIVSGGDDGCIHVWDLRRFKKGSSV 404
W S + H++ VN + W + PL++ DG + V + + +S
Sbjct: 82 WKEEN-GRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE-NGTTSP 138
Query: 405 ATFKHHTAPVTTVEWHPTESS------------TFASGGADDQIALWDLA 442
H V + W P F +GGAD+ + +W
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188
Score = 93.1 bits (231), Expect = 1e-19
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISW 374
H + D KR LA+CS D +I+I++ T + TL H V + W
Sbjct: 5 ANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEG-ETHKLIDTL-TGHEGPVWRVDW 61
Query: 375 NRTE--PLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTES-STFASGG 431
+ ++ S DG + +W + S +A H+A V +V+W P E
Sbjct: 62 AHPKFGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS 120
Query: 432 ADDQIALWDLA 442
+D ++++ +
Sbjct: 121 SDGKVSVVEFK 131
Score = 61.1 bits (148), Expect = 1e-09
Identities = 35/254 (13%), Positives = 55/254 (21%), Gaps = 68/254 (26%)
Query: 171 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQ 230
S++ E + E TG + IW V + L GH++ D+
Sbjct: 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211
Query: 231 WSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLAT 290
WS LA+
Sbjct: 212 WS-----------------PTVLLRS------------------------------YLAS 224
Query: 291 GDCKRNIHIWTPREA-GAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRIWD 348
R IWT G W+ + + WS G VLA D + +W
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG--NVLALSGGDNKVTLWK 282
Query: 349 TRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFK 408
+ + SGG +D + F
Sbjct: 283 ENLEGKWEPAGEVHQGG---------------GGSGGGGATSKEFDGPCQNEIDL--LFS 325
Query: 409 HHTAPVTTVEWHPT 422
+ +
Sbjct: 326 ECNDEIDNAKLIMK 339
Score = 49.6 bits (118), Expect = 3e-06
Identities = 35/180 (19%), Positives = 54/180 (30%), Gaps = 51/180 (28%)
Query: 611 GKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPG 670
GKV IW + G+ I + H ++ W+ E G
Sbjct: 77 GKVLIWKEEN------------------GRWSQIAV-----HAVHSASVNSVQWAPHEYG 113
Query: 671 -VLATGDCKRNIHIWTPREAG-----------------AWSVYLYTNRFGV--------L 704
+L + + +E G +W+
Sbjct: 114 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173
Query: 705 ATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP--GEKRVLASCSVDRSNRI 762
TG + IW V + L GH++ V D+ WSP + LAS S DR+ I
Sbjct: 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 233
Score = 38.8 bits (90), Expect = 0.008
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK-RVLASCSVDRSNRI 762
LAT + I I+ E ++ L GH V + W+ + +LASCS D I
Sbjct: 24 LATCSSDKTIKIFE-VEGETHKL-IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81
Score = 38.8 bits (90), Expect = 0.008
Identities = 33/191 (17%), Positives = 47/191 (24%), Gaps = 40/191 (20%)
Query: 611 GKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFS--FSGHLTEGFAMDWSSTE 668
GKV + + K T H + S ++ E + E
Sbjct: 123 GKVSVVEFKENGTTSPIIID--AH-----------AIGVNSASWAPATIEEDGEHNGTKE 169
Query: 669 PGVLATGDCKRNIHIWTPREAG-------------------AWSVYLYTNRFGVLATGDC 709
TG + IW AWS + + LA+
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY--LASVSQ 227
Query: 710 KRNIHIWTPREA-GAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRIGARRD 767
R IWT G W+ + + WS G VLA D +
Sbjct: 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG--NVLALSGGDNKVTLWKENL 285
Query: 768 MLYCFFVSLVH 778
VH
Sbjct: 286 EGKWEPAGEVH 296
Score = 35.3 bits (81), Expect = 0.083
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 731 LVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
H + D KR LA+CS D++ +I
Sbjct: 5 ANAHNELIHDAVLDYYGKR-LATCSSDKTIKI 35
Score = 31.5 bits (71), Expect = 1.3
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 404 VATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
V H + A+ +D I ++++
Sbjct: 2 VVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEV 38
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 99.6 bits (249), Expect = 2e-22
Identities = 9/166 (5%), Positives = 21/166 (12%), Gaps = 20/166 (12%)
Query: 288 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSI 344
G D+ K + + +
Sbjct: 123 PRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLL 182
Query: 345 RIWDTRVINTKSCMLTLPNA----HTSDVNVISWN----RTEPLIVSGGDDGCIHVWDLR 396
+ + +L + V +
Sbjct: 183 ARMV---LQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE---EAALVAPDYGAVAEYA 236
Query: 397 RFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ + T P + A A
Sbjct: 237 A--PAADTWGGEWGTDAAAQPAAIP-AQAGADWTAAPAPAAGGWDT 279
Score = 92.6 bits (231), Expect = 3e-20
Identities = 9/180 (5%), Positives = 26/180 (14%), Gaps = 15/180 (8%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+ +R I+ + + L + ++
Sbjct: 20 QMMLAADVHLGTKNCDF--QMERYVYKRRTDGIY---IINLGKT-WEKLQLAARVIVAIE 73
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGD 386
+ V ++ + HT +
Sbjct: 74 NPQ-DIIVQSARPYGQRAVLKFA---QYTGAHAIAG-RHTPGTFTNQLQTSFSEPRLLIL 128
Query: 387 DGCIHVWDLR----RFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ + + G +A L
Sbjct: 129 TDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQ 188
Score = 92.6 bits (231), Expect = 3e-20
Identities = 0/274 (0%), Positives = 0/274 (0%), Gaps = 45/274 (16%)
Query: 192 LATGDCKRNIHIW---TPREAGAWQVDQKPLGGHTNSAEDLQWS-DLKTAL------QTV 241
G D+ + K +
Sbjct: 123 PRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLL 182
Query: 242 ---DDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIH 298
+ I + L + + + A
Sbjct: 183 ARMV-----LQ------MRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGA 231
Query: 299 IWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCM 358
+ E A D T++ P + + +
Sbjct: 232 VA---EYAAPAADTWGGEWGTDAAAQPAAIPAQAG-ADWTAAPAPAAGGWDT---AAAPA 284
Query: 359 LTL------PNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH--- 409
Sbjct: 285 PGWEQGSAP--- 341
Query: 410 -HTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
Sbjct: 342 - 374
Score = 88.0 bits (219), Expect = 1e-18
Identities = 9/130 (6%), Positives = 25/130 (19%), Gaps = 10/130 (7%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
++ + + + + I+ L + I
Sbjct: 19 IQMMLAADVHLGTKNCDFQMER--YVYKRRTDGIYIIN---LGKTWEKL-QLAARVIVAI 72
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
+ + + + + + A HT T + + S
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFA---QYTGAHAIAGRHTPGTFTNQLQTS-FSEPRLLIL 128
Query: 433 DDQIALWDLA 442
D
Sbjct: 129 TDPRTDHQPI 138
Score = 39.1 bits (92), Expect = 0.005
Identities = 0/59 (0%), Positives = 0/59 (0%), Gaps = 1/59 (1%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
Sbjct: 313 - 370
Score = 37.6 bits (88), Expect = 0.014
Identities = 3/62 (4%), Positives = 6/62 (9%), Gaps = 3/62 (4%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSN 760
G D+ K + +
Sbjct: 123 PRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLL 182
Query: 761 RI 762
Sbjct: 183 AR 184
Score = 36.4 bits (85), Expect = 0.030
Identities = 6/59 (10%), Positives = 11/59 (18%), Gaps = 4/59 (6%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
A + E A D T++ P + +
Sbjct: 221 EAALVAPDYGAVA---EYAAPAADTWGGEWGTDAAAQPAAIPAQAG-ADWTAAPAPAAG 275
Score = 35.2 bits (82), Expect = 0.083
Identities = 4/61 (6%), Positives = 17/61 (27%), Gaps = 5/61 (8%)
Query: 702 GVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNR 761
+ +R I+ + + L + ++ + V ++ +
Sbjct: 37 QMERYVYKRRTDGIY---IINLGKT-WEKLQLAARVIVAIENPQ-DIIVQSARPYGQRAV 91
Query: 762 I 762
+
Sbjct: 92 L 92
Score = 29.8 bits (68), Expect = 3.5
Identities = 0/42 (0%), Positives = 4/42 (9%), Gaps = 2/42 (4%)
Query: 401 GSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ ++ +
Sbjct: 15 REQDIQMMLAADVHLGTKNCDF--QMERYVYKRRTDGIYIIN 54
Score = 29.1 bits (66), Expect = 6.4
Identities = 3/34 (8%), Positives = 4/34 (11%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
HT Q +
Sbjct: 102 AIAGRHTPGTFTNQLQTSFSE-PRLLILTDPRTD 134
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 98.9 bits (247), Expect = 4e-22
Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 14/162 (8%)
Query: 288 LATGDCKRNI-----HIWTPREAGAWQVDQKPLV-GHTNSVEDLQWSPGEKRVLASCSVD 341
TG + + L T+ +L++ K + + V
Sbjct: 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY-VIAGHVS 268
Query: 342 LSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTE-PLIVSGGDDGCIHVWDLRRFKK 400
I + + + +K + LP+ T N ++ + I +G ++G + WDLR +
Sbjct: 269 GVITVHN---VFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS-PE 324
Query: 401 GSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ P+ V + + F S G D I L ++
Sbjct: 325 CPVGEFLINEGTPINNVYFAA--GALFVSSGFDTSIKLDIIS 364
Score = 93.8 bits (234), Expect = 2e-20
Identities = 18/160 (11%), Positives = 51/160 (31%), Gaps = 15/160 (9%)
Query: 288 LATGDCKRNIHIWTPREAGA--WQVDQKPLVGHT---NSVEDLQWSPGEKRVLASCSVDL 342
+ + + + + + + + ++G++ ++ + + L +D
Sbjct: 20 VLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSH-LYKARLDG 78
Query: 343 SIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGS 402
+++T + L V + + G +G I V D
Sbjct: 79 HDFLFNT---IIRDGSKML--KRADYTAVDTAKLQMRRFILGTTEGDIKVLDS---NFNL 130
Query: 403 SVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ H + +T +++ P S D Q+ +W +
Sbjct: 131 QREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVK 169
Score = 93.5 bits (233), Expect = 2e-20
Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 14/155 (9%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
L + ++ ++ + +R + + I++
Sbjct: 71 LYKARLDGHDFLF---NTIIRD--GSKMLKRADYTAVDTAKLQMRR-FILGTTEGDIKVL 124
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATF 407
D N AH S++ + + + ++S D + +W + K GS+ T
Sbjct: 125 D---SNFNLQREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSV---KDGSNPRTL 177
Query: 408 KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
H A VT + S D I LW+
Sbjct: 178 IGHRATVTDIAIID-RGRNVLSASLDGTIRLWECG 211
Score = 88.5 bits (220), Expect = 1e-18
Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 39/180 (21%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRI 346
G + +I + ++ ++ H + + L++ P G L S S D+ ++I
Sbjct: 112 FILGTTEGDIKVL---DSNFNLQ-REIDQAHVSEITKLKFFPSG--EALISSSQDMQLKI 165
Query: 347 WDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVAT 406
W + S TL H + V I+ ++S DG I +W+ G+++ T
Sbjct: 166 WSVK---DGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC---GTGTTIHT 218
Query: 407 FKHHTAP------------------------VTTVEWHPTESSTFASGGADDQIALWDLA 442
F P +E+ +G I + ++
Sbjct: 219 FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVF 277
Score = 83.4 bits (207), Expect = 5e-17
Identities = 24/169 (14%), Positives = 46/169 (27%), Gaps = 26/169 (15%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
+ G I + + + + T S L + + + + W
Sbjct: 262 VIAGHVSGVITVH---NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQW 318
Query: 348 DTRVINTKSCMLTLP-NAHTSDVNVISWNRTEP--LIVSGGDDGCIHVWDLRRFKKGSSV 404
D R + C + + +N + + L VS G D I + + S
Sbjct: 319 DLR---SPECPVGEFLINEGTPINNVYFA---AGALFVSSGFDTSIKLDII---SDPESE 369
Query: 405 ATFKHHTAPVTTVEWHPTESS-----------TFASGGADDQIALWDLA 442
P V S G ++ AL++L+
Sbjct: 370 RPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418
Score = 36.5 bits (85), Expect = 0.038
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
G + +I + ++ ++ H + + L++ P G L S S D +I
Sbjct: 112 FILGTTEGDIKVL---DSNFNLQ-REIDQAHVSEITKLKFFPSG--EALISSSQDMQLKI 165
Score = 36.1 bits (84), Expect = 0.046
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 10/62 (16%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSN 760
+ G + W +P + L+ + ++ ++ G S D S
Sbjct: 306 IYAGYENGMLAQWDLRSPEC-----PVGEFLINEGTPINNVYFAAGAL--FVSSGFDTSI 358
Query: 761 RI 762
++
Sbjct: 359 KL 360
Score = 33.8 bits (78), Expect = 0.23
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ L+GH +V D+ + + S S+D + R+
Sbjct: 175 RTLIGHRATVTDIAIIDRGRN-VLSASLDGTIRL 207
Score = 31.8 bits (73), Expect = 0.96
Identities = 4/67 (5%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 701 FGVLATGDCKRNIHIWTPREAGA--WQVDQKPLVGHT---NSVEDLQWSPGEKRVLASCS 755
F + + + + + + + + ++G++ ++ + + L
Sbjct: 17 FKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSH-LYKAR 75
Query: 756 VDRSNRI 762
+D + +
Sbjct: 76 LDGHDFL 82
Score = 31.4 bits (72), Expect = 1.2
Identities = 5/59 (8%), Positives = 13/59 (22%), Gaps = 3/59 (5%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ G I + + + + T S L + + +
Sbjct: 262 VIAGHVSGVITVH---NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQ 317
Score = 29.9 bits (68), Expect = 3.5
Identities = 7/65 (10%), Positives = 16/65 (24%), Gaps = 7/65 (10%)
Query: 704 LATGDCKRNI-----HIWTPREAGAWQVDQKPLV-GHTNSVEDLQWSPGEKRVLASCSVD 757
TG + + L T+ +L++ K + + V
Sbjct: 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY-VIAGHVS 268
Query: 758 RSNRI 762
+
Sbjct: 269 GVITV 273
Score = 29.5 bits (67), Expect = 4.7
Identities = 2/59 (3%), Positives = 13/59 (22%), Gaps = 6/59 (10%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L + ++ ++ + +R + + ++
Sbjct: 71 LYKARLDGHDFLF---NTIIRD--GSKMLKRADYTAVDTAKLQMRR-FILGTTEGDIKV 123
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 97.4 bits (243), Expect = 5e-22
Identities = 39/196 (19%), Positives = 74/196 (37%), Gaps = 21/196 (10%)
Query: 261 PTPPLFSFSGHLTEGFAMDWSSTE---PG--VLATGDCKRNIHIWTPREAGAWQVDQKPL 315
P P++S GH A+D G + TG + +W PR+ + +P+
Sbjct: 100 PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV 159
Query: 316 VGHTNS-----VEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVN 370
G ++ E+ + + + I+++D R + N + V
Sbjct: 160 QGENKRDCWTVAFGNAYNQEERV-VCAGYDNGDIKLFDLR---NMAL-RWETN-IKNGVC 213
Query: 371 VISWNR---TEPLIVSGGDDGCIHVWDLR--RFKKGSSVATFKHHTAPVTTVEWHPTESS 425
+ ++R + +V+ +G HV+D+R KG + + K H + V V P
Sbjct: 214 SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRE 273
Query: 426 TFASGGADDQIALWDL 441
F + G + LW
Sbjct: 274 LFLTAGGAGGLHLWKY 289
Score = 95.5 bits (238), Expect = 3e-21
Identities = 30/168 (17%), Positives = 67/168 (39%), Gaps = 21/168 (12%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQW------SPGEKRVLASCSVD 341
LATGD N+HIW A ++ + GH + + G + + S D
Sbjct: 83 LATGDFGGNLHIW---NLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE-IVTGSRD 138
Query: 342 LSIRIWDTRVINTKSCMLTLPNAHT-----SDVNVISWNRTEPLIVSGGDDGCIHVWDLR 396
++++WD R + + + ++N+ E ++ +G D+G I ++DLR
Sbjct: 139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR 198
Query: 397 RFKKGSSVATFKHHTAPVTTVEWHP--TESSTFASGGADDQIALWDLA 442
++ + V ++E+ + + + + ++D+
Sbjct: 199 ----NMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242
Score = 90.1 bits (224), Expect = 2e-19
Identities = 46/305 (15%), Positives = 92/305 (30%), Gaps = 77/305 (25%)
Query: 192 LATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWS------------------- 232
LATGD N+HIW A ++ + GH +
Sbjct: 83 LATGDFGGNLHIW---NLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG 139
Query: 233 -----DLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGV 287
D + V + + NK+ + ++ +
Sbjct: 140 TVKVWDPRQKDDPVANMEPVQGENKRDCWT--VAFGNAYNQEERV--------------- 182
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP--GEKRVLASCSVDLSIR 345
+ G +I ++ R A + N V L++ L + S++
Sbjct: 183 VCAGYDNGDIKLFDLR-NMA----LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237
Query: 346 IWDTRVINTKS--CMLTLPNAHTSDVNVISW---NRTEPLIVSGGDDGCIHVWDLRRFKK 400
++D R + ++ AH S V + NR L ++ G G +H+W +
Sbjct: 238 VFDMRTQHPTKGFASVSE-KAHKSTVWQVRHLPQNRE--LFLTAGGAGGLHLWKYEYPIQ 294
Query: 401 ----------------GSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVE 444
S + T P+++++W P + D + + V
Sbjct: 295 RSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI--VT 352
Query: 445 RDSEI 449
+ ++I
Sbjct: 353 KLNKI 357
Score = 85.1 bits (211), Expect = 6e-18
Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 16/145 (11%)
Query: 309 QVDQKPLVGHTNSVEDLQWSPGEKRVLASCSV---DLSIRIWDTRVINTKSCMLTLPNAH 365
Q+ G +V D +W P + + + I++++ I L
Sbjct: 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYE---IQHGDLKLLREIEK 64
Query: 366 TSDVNVISWNRTEP---LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPT 422
+ ++ T + +G G +H+W+L + V + K H + ++
Sbjct: 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM--PVYSVKGHKEIINAIDGIGG 122
Query: 423 ES-----STFASGGADDQIALWDLA 442
+G D + +WD
Sbjct: 123 LGIGEGAPEIVTGSRDGTVKVWDPR 147
Score = 40.4 bits (95), Expect = 0.002
Identities = 6/60 (10%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 704 LATGDCKRNIHIWTPREAGAWQ-VDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L + H++ R + H ++V ++ P + + + +
Sbjct: 227 LVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHL 286
Score = 36.2 bits (84), Expect = 0.033
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 19/93 (20%)
Query: 671 VLATGDCKRNIHIW-TPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQK 729
+ T +H+W GV + +
Sbjct: 274 LFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ------------------ 315
Query: 730 PLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ T + L WSP ++ + S D++ R+
Sbjct: 316 NVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRV 348
Score = 33.5 bits (77), Expect = 0.24
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 23/113 (20%)
Query: 672 LATGDCKRNIHIW---TPREAGA------WSVYLYTNRFGV--------LATGDCKRNIH 714
LATGD N+HIW P + G+ + TG +
Sbjct: 83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142
Query: 715 IWTPREAGAWQVDQKPLVGHTNS-----VEDLQWSPGEKRVLASCSVDRSNRI 762
+W PR+ + +P+ G ++ E+ + + + ++
Sbjct: 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERV-VCAGYDNGDIKL 194
Score = 33.1 bits (76), Expect = 0.33
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 725 QVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSN 760
Q+ G +V D +W P + + + R
Sbjct: 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGT 43
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 100 bits (250), Expect = 1e-21
Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 15/155 (9%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
L + I +W + D L H +V+D + + L S S D ++++W
Sbjct: 1018 LISSSEDSVIQVWNWQTG-----DYVFLQAHQETVKDFRLLQDSR--LLSWSFDGTVKVW 1070
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATF 407
+ T H V + + S D +W S +
Sbjct: 1071 NVI---TGRIERDF-TCHQGTVLSCAISSDATKFSSTSADKTAKIWSF---DLLSPLHEL 1123
Query: 408 KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
K H V + A+G + +I +W+++
Sbjct: 1124 KGHNGCVRCSAFSLD-GILLATGDDNGEIRIWNVS 1157
Score = 99.1 bits (247), Expect = 2e-21
Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 22/190 (11%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVE 323
L H E +SS + +AT + + IW ++ ++ H+ V
Sbjct: 649 KLLDIKAHEDEVLCCAFSSDDS-YIATCSADKKVKIW---DSATGKL-VHTYDEHSEQVN 703
Query: 324 DLQWSP-GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIV 382
++ +LA+ S D +++WD N K C T+ HT+ VN ++ + L+
Sbjct: 704 CCHFTNKSNHLLLATGSNDFFLKLWDL---NQKECRNTMF-GHTNSVNHCRFSPDDELLA 759
Query: 383 SGGDDGCIHVWDLR----------RFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
S DG + +WD+R + SS + V W +
Sbjct: 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA-DGDKIIVAA- 817
Query: 433 DDQIALWDLA 442
+++ L+D+
Sbjct: 818 KNKVLLFDIH 827
Score = 97.6 bits (243), Expect = 6e-21
Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 10/163 (6%)
Query: 282 STEPGVLATGDCKRNIHIWT-PREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSV 340
+ + A + + + + + HT++V +S +R +ASC
Sbjct: 577 YRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQR-IASCGA 635
Query: 341 DLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKK 400
D +++++ T +L + AH +V +++ + I + D + +WD
Sbjct: 636 DKTLQVFKA---ETGEKLLDI-KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS---AT 688
Query: 401 GSSVATFKHHTAPVTTVEWHPT-ESSTFASGGADDQIALWDLA 442
G V T+ H+ V + A+G D + LWDL
Sbjct: 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Score = 96.4 bits (240), Expect = 2e-20
Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 18/155 (11%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
+ D R + + + + V SP + +A D +I+I
Sbjct: 937 VLAVDNIRGLQLIAGKTG-------QIDYLPEAQVSCCCLSPHLEY-VAFGDEDGAIKII 988
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATF 407
+ + H V I + ++S +D I VW+ +
Sbjct: 989 ELP---NNRVFSSG-VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW----QTGDYVFL 1040
Query: 408 KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ H V S S D + +W++
Sbjct: 1041 QAHQETVKDFRLLQ--DSRLLSWSFDGTVKVWNVI 1073
Score = 93.0 bits (231), Expect = 2e-19
Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 22/163 (13%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
++ + IW L GH V +S LA+ + IRIW
Sbjct: 1100 FSSTSADKTAKIW---SFDLLSP-LHELKGHNGCVRCSAFSLDGIL-LATGDDNGEIRIW 1154
Query: 348 DTRVINTKSCMLTLP--------NAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFK 399
+ ++ + + H V + ++ +VS G + W++
Sbjct: 1155 N---VSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGY--LKWWNV---A 1206
Query: 400 KGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
G S TF + + + P + T+ + + + +
Sbjct: 1207 TGDSSQTFYTNGTNLKKIHVSP-DFRTYVTVDNLGILYILQVL 1248
Score = 93.0 bits (231), Expect = 2e-19
Identities = 37/284 (13%), Positives = 89/284 (31%), Gaps = 31/284 (10%)
Query: 168 PLFSFSGHLTEGFAMDWSST-EPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSA 226
+ ++ H + +++ +LATG + +W + + + GHTNS
Sbjct: 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC----RNTMFGHTNSV 746
Query: 227 EDLQWS-DLKT-ALQTVDDPFQL----AEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDW 280
++S D + A + D +L + + +K W
Sbjct: 747 NHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806
Query: 281 SSTEP--GVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASC 338
S + K + ++ + + + GH ++++ +SP +
Sbjct: 807 S---ADGDKIIVA-AKNKVLLF---DIHTSGLLAEIHTGHHSTIQYCDFSPYDHL-AVIA 858
Query: 339 SVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRF 398
+ +W+ ++ + H S V+ + ++ ++ DD I VW+
Sbjct: 859 LSQYCVELWNID---SRLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET--- 911
Query: 399 KKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
KK + V + + + + L
Sbjct: 912 KKVCKNSAIVLKQ--EIDVVFQE-NETMVLAVDNIRGLQLIAGK 952
Score = 67.9 bits (166), Expect = 9e-12
Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 15/131 (11%)
Query: 312 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNV 371
+ V ++ Q R+ +I+ V+ HT V
Sbjct: 572 ETSEVYRQAKLQAKQEGD-TGRLYLEWINKKTIKNLSRLVVR----------PHTDAVYH 620
Query: 372 ISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGG 431
+++ I S G D + V+ + G + K H V + + S A+
Sbjct: 621 ACFSQDGQRIASCGADKTLQVFKA---ETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCS 676
Query: 432 ADDQIALWDLA 442
AD ++ +WD A
Sbjct: 677 ADKKVKIWDSA 687
Score = 44.0 bits (104), Expect = 2e-04
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 18/127 (14%)
Query: 648 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPR-----------EAGAWSV-Y 695
L H E +SS + +AT + + IW +
Sbjct: 649 KLLDIKAHEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF 707
Query: 696 LYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCS 755
+ +LATG + +W + + + GHTNSV ++SP ++ LASCS
Sbjct: 708 TNKSNHLLLATGSNDFFLKLWDLNQKEC----RNTMFGHTNSVNHCRFSPDDEL-LASCS 762
Query: 756 VDRSNRI 762
D + R+
Sbjct: 763 ADGTLRL 769
Score = 37.9 bits (88), Expect = 0.015
Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 29/107 (27%)
Query: 672 LATGDCKRNIHIWTPR----------EAGAWSVYLYTNRF---GVLATGDCKRNIHIW-- 716
L + I +W + + R L + + +W
Sbjct: 1018 LISSSEDSVIQVWNWQTGDYVFLQAHQETVKDF-----RLLQDSRLLSWSFDGTVKVWNV 1072
Query: 717 -TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
T R ++ H +V S + +S S D++ +I
Sbjct: 1073 ITGRI-------ERDFTCHQGTVLSCAISSDATK-FSSTSADKTAKI 1111
Score = 37.9 bits (88), Expect = 0.017
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ + +W ++ GH + V + +SP + S D++ R+
Sbjct: 855 AVIALSQYCVELWNI-DSRL---KVADCRGHLSWVHGVMFSPDGSS-FLTASDDQTIRV 908
Score = 36.7 bits (85), Expect = 0.038
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
++ + IW L GH V +S LA+ + RI
Sbjct: 1100 FSSTSADKTAKIW---SFDLLSP-LHELKGHNGCVRCSAFSLDGIL-LATGDDNGEIRI 1153
Score = 35.6 bits (82), Expect = 0.075
Identities = 15/136 (11%), Positives = 38/136 (27%), Gaps = 31/136 (22%)
Query: 648 PLFSFSGHLTEGFAMDWSST-EPGVLATGDCKRNIHIWTPR-----------EAGAWSVY 695
+ ++ H + +++ +LATG + +W
Sbjct: 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC- 749
Query: 696 LYTNRF----GVLATGDCKRNIHIW---------TPREAGAWQVDQKPLVGHTNSVEDLQ 742
RF +LA+ + +W + + + P V+
Sbjct: 750 ----RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805
Query: 743 WSPGEKRVLASCSVDR 758
WS + + + ++
Sbjct: 806 WSADGDK-IIVAAKNK 820
Score = 35.2 bits (81), Expect = 0.094
Identities = 5/59 (8%), Positives = 15/59 (25%), Gaps = 7/59 (11%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L + + W + + +++ + SP + + I
Sbjct: 1193 LVSAG--GYLKWW---NVATGDS-SQTFYTNGTNLKKIHVSPDFRT-YVTVDNLGILYI 1244
Score = 35.2 bits (81), Expect = 0.11
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 701 FGVLATGDCKRNIHIWT-PREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRS 759
+ A + + + + + HT++V +S +R +ASC D++
Sbjct: 580 AKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQR-IASCGADKT 638
Query: 760 NRI 762
++
Sbjct: 639 LQV 641
Score = 35.2 bits (81), Expect = 0.12
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 704 LATGDCKRNIHIW-----TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCS 755
LATGD I IW + A ++ H V D+ +SP K L S
Sbjct: 1142 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT-LVSAG 1197
Score = 34.8 bits (80), Expect = 0.13
Identities = 13/104 (12%), Positives = 25/104 (24%), Gaps = 26/104 (25%)
Query: 672 LATGDCKRNIHIW---------TPREAGAWSVYLYTNRF----GVLATGDCKRNIHIWTP 718
T + I +W V F ++ D R + +
Sbjct: 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDV-----VFQENETMVLAVDNIRGLQLIAG 951
Query: 719 REAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ + V SP + +A D + +I
Sbjct: 952 KTG-------QIDYLPEAQVSCCCLSPHLEY-VAFGDEDGAIKI 987
Score = 34.0 bits (78), Expect = 0.25
Identities = 5/59 (8%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ K + ++ + + + GH ++++ +SP + +
Sbjct: 813 IIVA-AKNKVLLF---DIHTSGLLAEIHTGHHSTIQYCDFSPYDHL-AVIALSQYCVEL 866
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 96.0 bits (240), Expect = 1e-21
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
LA+G I+I+ + ++ L GH + L +SP + L + S D I+I+
Sbjct: 179 LASGAIDGIINIF---DIATGKL-LHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIY 233
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATF 407
D + + TL + H S V +++ + VS D + VWD+ + V TF
Sbjct: 234 DVQ---HANLAGTL-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV---GTRTCVHTF 286
Query: 408 KHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
H V V+++ S S G D +I ++D
Sbjct: 287 FDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDC 319
Score = 96.0 bits (240), Expect = 1e-21
Identities = 30/156 (19%), Positives = 64/156 (41%), Gaps = 13/156 (8%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRI 346
+ TG + +W + Q L GH V + S + AS S+D IR+
Sbjct: 51 VVTGSLDDLVKVWKW-RDERLDL-QWSLEGHQLGVVSVDISHTL--PIAASSSLDAHIRL 106
Query: 347 WDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVAT 406
WD + + ++ +A D ++++ + +G G ++++ + + G +
Sbjct: 107 WD---LENGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV---ESGKKEYS 159
Query: 407 FKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ ++ + P + ASG D I ++D+A
Sbjct: 160 LDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIA 194
Score = 94.8 bits (237), Expect = 2e-21
Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 13/158 (8%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK---RVLASCSVDLSI 344
+ T + + + K H +++ + W +K + + S+D +
Sbjct: 5 HHHSSRENLYFQGTNQ----YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLV 60
Query: 345 RIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSV 404
++W R +L H V + + T P+ S D I +WDL + G +
Sbjct: 61 KVWKWRD-ERLDLQWSL-EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL---ENGKQI 115
Query: 405 ATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ T+ + P +S A+G ++ ++ +
Sbjct: 116 KSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVE 152
Score = 94.1 bits (235), Expect = 4e-21
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 288 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSI 344
LATG ++I+ + ++ + L + + +SP K LAS ++D I
Sbjct: 137 LATGTHVGKVNIFGVESGKK-------EYSLDTRGKFILSIAYSPDGKY-LASGAIDGII 188
Query: 345 RIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSV 404
I+D I T + TL H + ++++ L+V+ DDG I ++D+ + +
Sbjct: 189 NIFD---IATGKLLHTL-EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV---QHANLA 241
Query: 405 ATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
T H + V V + P + + F S +D + +WD+
Sbjct: 242 GTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVG 278
Score = 34.7 bits (81), Expect = 0.11
Identities = 7/62 (11%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK---RVLASCSVDRSN 760
+ T + + + K H +++ + W +K + + S+D
Sbjct: 5 HHHSSRENLYFQGTNQ----YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLV 60
Query: 761 RI 762
++
Sbjct: 61 KV 62
Score = 33.6 bits (78), Expect = 0.20
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
LA+G I+I+ + ++ L GH + L +SP + L + S D +I
Sbjct: 179 LASGAIDGIINIF---DIATGKL-LHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKI 232
Score = 33.6 bits (78), Expect = 0.24
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
+ TG + +W + Q L GH V + S + AS S+D R+
Sbjct: 51 VVTGSLDDLVKVWKW-RDERLDL-QWSLEGHQLGVVSVDISHTL--PIAASSSLDAHIRL 106
Score = 33.2 bits (77), Expect = 0.27
Identities = 7/59 (11%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ +++ +W + G H + V ++++ + + S D+ I
Sbjct: 263 FVSSSSDKSVKVW---DVGTRTC-VHTFFDHQDQVWGVKYNGNGSK-IVSVGDDQEIHI 316
Score = 33.2 bits (77), Expect = 0.31
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSN 760
LATG ++I+ + ++ + L + + +SP K LAS ++D
Sbjct: 137 LATGTHVGKVNIFGVESGKK-------EYSLDTRGKFILSIAYSPDGKY-LASGAIDGII 188
Query: 761 RI 762
I
Sbjct: 189 NI 190
Score = 33.2 bits (77), Expect = 0.31
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L T I I+ + + L GH + V ++ + P + S S D+S ++
Sbjct: 221 LVTASDDGYIKIY---DVQHANL-AGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKV 274
Score = 31.3 bits (72), Expect = 1.3
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
K + L +SP + LA+ + I
Sbjct: 116 KSIDAGPVDAWTLAFSPDSQY-LATGTHVGKVNI 148
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 96.6 bits (241), Expect = 1e-21
Identities = 40/267 (14%), Positives = 81/267 (30%), Gaps = 53/267 (19%)
Query: 264 PLFSFSGHLTEGFAMD-----WS---STEPGVLATGDCKRNIHIWTPREAGAWQVDQKPL 315
+ ++ + W+ +T +LA + I I Q K
Sbjct: 56 EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII---NPITMQC-IKHY 111
Query: 316 VGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNA--HTSDVNVIS 373
VGH N++ +L++ P + +L S S D ++R+W+ + T + + H +V
Sbjct: 112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ---TDTLVAIFGGVEGHRDEVLSAD 168
Query: 374 WNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTA--------------------- 412
++ I+S G D + +W + + K
Sbjct: 169 YDLLGEKIMSCGMDHSLKLWRI---NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225
Query: 413 -------PVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLF 465
V V W S ++ I W D + + +E
Sbjct: 226 TRDIHRNYVDCVRWLGD---LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD 282
Query: 466 IHLGQKEIKELHWHPQLPGTIISTANS 492
Q +I + + +++ N
Sbjct: 283 YS--QCDIWYMRFSMDFWQKMLALGNQ 307
Score = 91.2 bits (227), Expect = 7e-20
Identities = 20/148 (13%), Positives = 55/148 (37%), Gaps = 21/148 (14%)
Query: 308 WQVDQKPLVGHTNSVEDLQWSP----GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPN 363
++ H + +Q++ G+ V A+ + +++ +++ + L
Sbjct: 7 FKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVG-SNRVTLYE---CHSQGEIRLL-Q 61
Query: 364 AHTS-----DVNVISW----NRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPV 414
++ + +W N + PL+ G G I + + + + H +
Sbjct: 62 SYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP---ITMQCIKHYVGHGNAI 118
Query: 415 TTVEWHPTESSTFASGGADDQIALWDLA 442
+++HP + + S D + LW++
Sbjct: 119 NELKFHPRDPNLLLSVSKDHALRLWNIQ 146
Score = 87.7 bits (218), Expect = 1e-18
Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 38/192 (19%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVE 323
+ + D++ + IH D H N V+
Sbjct: 195 MMNAIKESY------DYNP-NKTNRPFIS--QKIHFP----------DFSTRDIHRNYVD 235
Query: 324 DLQWSPGEKRVLASCSVDLSIRIWD-------TRVINTKSCMLTLP---NAHTSDVNVIS 373
++W ++ S S + +I W I +T+ + D+ +
Sbjct: 236 CVRWLG---DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR 292
Query: 374 W--NRTEPLIVSGGDDGCIHVWDLRRFK-KGSSVATFKHHT--APVTTVEWHPTESSTFA 428
+ + + ++ G G ++VWDL + T HH A + + SS
Sbjct: 293 FSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD-SSILI 351
Query: 429 SGGADDQIALWD 440
+ D I WD
Sbjct: 352 AVCDDASIWRWD 363
Score = 42.2 bits (100), Expect = 5e-04
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 691 AWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRV 750
AW+ T+ +LA + I I Q K VGH N++ +L++ P + +
Sbjct: 76 AWTYDSNTSH-PLLAVAGSRGIIRII---NPITMQC-IKHYVGHGNAINELKFHPRDPNL 130
Query: 751 LASCSVDRSNRI 762
L S S D + R+
Sbjct: 131 LLSVSKDHALRL 142
Score = 34.9 bits (81), Expect = 0.086
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L + + +W + + GH + V + ++ + SC +D S ++
Sbjct: 131 LLSVSKDHALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEK-IMSCGMDHSLKL 187
Score = 31.1 bits (71), Expect = 1.7
Identities = 10/91 (10%), Positives = 24/91 (26%), Gaps = 25/91 (27%)
Query: 672 LATGDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPL 731
+ + +E+ ++ + IH D
Sbjct: 190 INSKRMMN-----AIKESYDYN-----PNKTNRPFIS--QKIHFP----------DFSTR 227
Query: 732 VGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
H N V+ ++W ++ S S + +
Sbjct: 228 DIHRNYVDCVRWLG---DLILSKSCENAIVC 255
Score = 30.3 bits (69), Expect = 3.0
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHT--NSVEDLQWSP-GEKRVLASCSVDRSN 760
LA G+ +++W + L H ++ +S +L + D S
Sbjct: 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS--SILIAVCDDASI 359
Query: 761 RI 762
Sbjct: 360 WR 361
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 98.4 bits (244), Expect = 1e-21
Identities = 45/371 (12%), Positives = 102/371 (27%), Gaps = 47/371 (12%)
Query: 185 SSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDDP 244
+ + I I+ + V + + DL+W + A V
Sbjct: 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG-- 226
Query: 245 FQLA-------------EHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATG 291
L+ N + P + S + D+ S P + G
Sbjct: 227 -CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--PTTVVCG 283
Query: 292 DCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDL--QWSPGEKRVLASCSVDLSIRIWDT 349
+ + + +V H + + + +S E V+++ +VD I++
Sbjct: 284 FKNGFVAEFDLTD---PEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP 340
Query: 350 RVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH 409
+ + + T+ S++ + + + + R + + +
Sbjct: 341 K--DIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET 398
Query: 410 HTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLG 469
+ HP +G AD + + + A I+ A K L
Sbjct: 399 TITAIGVSRLHP----MVLAGSADGSLIITNAARRLLHGIKNSSATQKSL---------- 444
Query: 470 QKEIKELHWHPQLPGTIISTANSGFNIFRTISDLPSQLLFIHLGQKEIKELHWHPQLPG- 528
L +S + ++ + S+ I I W+ G
Sbjct: 445 -----RLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAK-IDAHGINITCTKWNETSAGG 498
Query: 529 -TIISTANSGF 538
+ ++G
Sbjct: 499 KCYAFSNSAGL 509
Score = 83.4 bits (205), Expect = 8e-17
Identities = 47/381 (12%), Positives = 109/381 (28%), Gaps = 82/381 (21%)
Query: 128 SNLTSTEEDNERELEDDENDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSST 187
S + E+ D E + + + G + + + W
Sbjct: 162 SQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWD---LKWHEG 218
Query: 188 EP-----GVLATGDCKRNIHIW----TPREAGAWQVDQKP---LGGHTNSAEDLQWSDLK 235
G L+ + I+ + +++ +KP L + +
Sbjct: 219 CHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT 278
Query: 236 TALQTVDD----PFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMD--WSSTEPGVLA 289
T + + F L + P P F H + ++ +S E V++
Sbjct: 279 TVVCGFKNGFVAEFDLTD-----------PEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327
Query: 290 TGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT 349
T +I+ P++ + +++ + + P + S S+R +
Sbjct: 328 TVAVDGYFYIFNPKDIATTKTTVSR--FRGSNLVPVVYCPQIYSYIYSDGAS-SLRAVPS 384
Query: 350 RVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRR-----FKKGSSV 404
R +++ + + I +R P++++G DG + + + R K S+
Sbjct: 385 RAAFAVHPLVS----RETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSAT 440
Query: 405 ATFKH------------------------------------HTAPVTTVEWHPTE--SST 426
H +T +W+ T
Sbjct: 441 QKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKC 500
Query: 427 FASGGADDQIALWDLAVERDS 447
+A + + L L++E
Sbjct: 501 YAFSNSAGLLTLEYLSLEHHH 521
Score = 65.7 bits (159), Expect = 3e-11
Identities = 33/258 (12%), Positives = 68/258 (26%), Gaps = 32/258 (12%)
Query: 300 WTPREAGAW-QVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCM 358
W E D + L + D + + I+I+
Sbjct: 141 WLNIEENTDIGKDIQYLAVAVSQYMDEPLNE-HLEMFDKEKHSSCIQIFKMNTSTLHCVK 199
Query: 359 LTLPNAHTSDVNVISWNRTEP------LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTA 412
+ +V + W+ + +G I+ ++ + V FK
Sbjct: 200 VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEI--IDNATDVHVFKMCEK 257
Query: 413 PVTTVEWHPTES--------STFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLL 464
P T+ + +T G + +A +DL ++PS
Sbjct: 258 PSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDL-------------TDPEVPSFYD 304
Query: 465 FIHLGQKEIKELHWHPQLPGTIISTANSGF-NIFRTISDLPSQLLFIHLGQKEIKELHWH 523
+H + + + A G+ IF ++ + + +
Sbjct: 305 QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC 364
Query: 524 PQLPGTIISTANSGFNIF 541
PQ+ I S S
Sbjct: 365 PQIYSYIYSDGASSLRAV 382
Score = 49.9 bits (118), Expect = 3e-06
Identities = 57/443 (12%), Positives = 111/443 (25%), Gaps = 92/443 (20%)
Query: 337 SCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLR 396
+VI K+ + T N+I ++ G D + D
Sbjct: 56 CLDPPCKKESAYNKVIGDKNRTVYHEINKTEFENMIKLRTKRLKLLIGEVDAEVSTGDKI 115
Query: 397 RFKKGSSVATFKHHT---APVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQRE 453
F ++ VT + W E +T
Sbjct: 116 EFPVLANGKRRGFIYNVGGLVTDIAWLNIEENTDIGKD---------------------- 153
Query: 454 AELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIFRTISDLPSQLLFIHLG 513
Q L + + Q + L+ H ++ ++ T + ++ I
Sbjct: 154 -------IQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHS 206
Query: 514 QKEIKELHWHPQLPGTIISTANSGFNIFRTISMSNLTSTEEDNERELEDDESEGSGDEDR 573
E+ +L WH + L+ ++ + +
Sbjct: 207 FGEVWDLKWHEGCHAPH--------------LVGCLSFVSQEGTINFLEIIDNATDVHVF 252
Query: 574 RKDPVMNSYFIRHRGCINRVRTCQYGSTTLAGVWGEVGKVGIWDLKTALQTVDDPFQLAE 633
+ + I +T + G + G V +DL
Sbjct: 253 KMCEKPSLTLSLADSLITTF-DFLSPTTVVCG--FKNGFVAEFDLTD------------- 296
Query: 634 HNKKRGKGPGIPTPPLFSFSGHLTEGFAMD--WSSTEPGVLATGDCKRNIHIWTPREAGA 691
P P F H + ++ +S E V++T +I+ P++
Sbjct: 297 -----------PEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345
Query: 692 WSVYLYTNR------------FGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVE 739
+ R D ++ R A A PLV ++
Sbjct: 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA----VHPLVSRETTIT 401
Query: 740 DLQWSPGEKRVLASCSVDRSNRI 762
+ S + + S D S I
Sbjct: 402 AIGVSRLHPM-VLAGSADGSLII 423
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription
inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP:
b.69.4.1
Length = 393
Score = 96.1 bits (240), Expect = 2e-21
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 9/155 (5%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
++ G + + ++ + + +SP K LA+ + D IRIW
Sbjct: 92 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF-LATGAEDRLIRIW 150
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATF 407
D I + ++ L H D+ + + + +VSG D + +WDL + G T
Sbjct: 151 D---IENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL---RTGQCSLTL 203
Query: 408 KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
VTTV P + A+G D + +WD
Sbjct: 204 SIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Score = 89.2 bits (222), Expect = 4e-19
Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 22/172 (12%)
Query: 288 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSI 344
+A G R + +W T + + GH +SV + ++ + + S S+D S+
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSV 280
Query: 345 RIWDTR---------VINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDL 395
++W+ + N+ +C +T H V ++ + + I+SG D + WD
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTY-IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339
Query: 396 RRFKKGSSVATFKHHTAPVTTVEWHPTES-----STFASGGADDQIALWDLA 442
K G+ + + H V +V S + FA+G D + +W
Sbjct: 340 ---KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
Score = 85.4 bits (212), Expect = 9e-18
Identities = 23/172 (13%), Positives = 62/172 (36%), Gaps = 23/172 (13%)
Query: 288 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSI 344
+ K+ + P V+ + HT+ V +++S + LA+ + +
Sbjct: 30 VPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTT 87
Query: 345 RIWDT--------------RVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCI 390
+++ + ++ + + + + ++ + +G +D I
Sbjct: 88 QVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLI 147
Query: 391 HVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+WD+ + V + H + ++++ P SG D + +WDL
Sbjct: 148 RIWDI---ENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLR 195
Score = 77.6 bits (192), Expect = 3e-15
Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 13/143 (9%)
Query: 312 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT---RVINTKSCMLTLPNAHTSD 368
+ + V + SPG+ + +A+ S+D ++R+WD+ ++ H
Sbjct: 199 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 258
Query: 369 VNVISWNRTEPLIVSGGDDGCIHVWDLR---------RFKKGSSVATFKHHTAPVTTVEW 419
V + + R +VSG D + +W+L+ G+ T+ H V +V
Sbjct: 259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 318
Query: 420 HPTESSTFASGGADDQIALWDLA 442
SG D + WD
Sbjct: 319 TQ-NDEYILSGSKDRGVLFWDKK 340
Score = 71.1 bits (175), Expect = 4e-13
Identities = 21/157 (13%), Positives = 45/157 (28%), Gaps = 29/157 (18%)
Query: 308 WQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKS----CMLTLPN 363
+ V H+ + + + + + +
Sbjct: 4 YLVPYNQRANHSKPIPPFLLDLDSQS-VPDALKKQTNDYYILYNPALPREIDVELHKS-L 61
Query: 364 AHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAP---------- 413
HTS V + ++ + +G + V+ + GS VA +A
Sbjct: 62 DHTSVVCCVKFSNDGEYLATGCNK-TTQVYRV---SDGSLVARLSDDSAANKDPENLNTS 117
Query: 414 --------VTTVEWHPTESSTFASGGADDQIALWDLA 442
+ +V + P + A+G D I +WD+
Sbjct: 118 SSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIE 153
Score = 63.8 bits (156), Expect = 8e-11
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 312 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNV 371
+ +GH + V + + ++ + S S D + WD + + + +L L H + V
Sbjct: 303 EVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKK---SGNPLLML-QGHRNSVIS 357
Query: 372 ISWNRTEP------LIVSGGDDGCIHVWDLRR 397
++ + +G D +W ++
Sbjct: 358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
Score = 34.5 bits (80), Expect = 0.12
Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSN 760
+ K+ + P V+ + HT+ V +++S + LA+ +++
Sbjct: 30 VPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTT 87
Query: 761 RI 762
++
Sbjct: 88 QV 89
Score = 33.3 bits (77), Expect = 0.32
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSN 760
+A G R + +W T + + GH +SV + ++ + + S S+DRS
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSV 280
Query: 761 RI 762
++
Sbjct: 281 KL 282
Score = 33.0 bits (76), Expect = 0.41
Identities = 3/39 (7%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 724 WQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ V H+ + + + ++N
Sbjct: 4 YLVPYNQRANHSKPIPPFLLDLDSQS-VPDALKKQTNDY 41
Score = 32.2 bits (74), Expect = 0.67
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSN 760
LATG R I IW + L GH + L + P + L S S DR+
Sbjct: 138 LATGAEDRLIRIWDIENRKI-------VMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTV 189
Query: 761 RI 762
RI
Sbjct: 190 RI 191
Score = 31.8 bits (73), Expect = 0.84
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
++ G + + ++ + + +SP K LA+ + DR RI
Sbjct: 92 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF-LATGAEDRLIRI 149
Score = 31.0 bits (71), Expect = 1.7
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 728 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ +GH + V + + ++ + S S DR
Sbjct: 303 EVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLF 336
Score = 30.7 bits (70), Expect = 2.3
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 9/48 (18%)
Query: 724 WQVD----QKPLVGHTNSVEDLQWSPGEK-----RVLASCSVDRSNRI 762
W L GH NSV + + G V A+ S D RI
Sbjct: 337 WDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 384
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 96.2 bits (240), Expect = 3e-21
Identities = 25/170 (14%), Positives = 62/170 (36%), Gaps = 24/170 (14%)
Query: 289 ATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWD 348
D +I + + + +++ W+P ++ +LA + R+
Sbjct: 18 TQEDDTNSIDSSDDLDGFVKIL---KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLAR 74
Query: 349 T----------------RVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHV 392
+ + T+ V ++W+ IV+G ++G + +
Sbjct: 75 IVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRL 134
Query: 393 WDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
W+ K G+ + H AP+ +V+W+ + + S ++ LW++
Sbjct: 135 WN----KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVI 179
Score = 96.2 bits (240), Expect = 3e-21
Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 36/201 (17%)
Query: 270 GHLTEGFAMDWSSTEPGVLATGDCKRNIHIW----------------TPREAGAWQVDQK 313
L + W+ + +LA G+ + E
Sbjct: 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA 102
Query: 314 PLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVIS 373
TN V L WS + + + +R+W+ T + + L N H + + +
Sbjct: 103 SSGKTTNQVTCLAWSHDGNS-IVTGVENGELRLWNK----TGALLNVL-NFHRAPIVSVK 156
Query: 374 WNRTEPLIVSGGDDGCIHVWD------LRRFK------KGSSVATFKHHTAPVTTVEWHP 421
WN+ I+S + +W+ ++ F+ + + VEW
Sbjct: 157 WNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD 216
Query: 422 TESSTFASGGADDQIALWDLA 442
F G I ++ +
Sbjct: 217 --DDKFVIPGPKGAIFVYQIT 235
Score = 95.8 bits (239), Expect = 4e-21
Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
+ +G + + +E G ++ + G + D++W +K +I ++
Sbjct: 178 VISGTV---MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK--FVIPGPKGAIFVY 232
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATF 407
I K+ L H ++V+ +N T L++S DDG + +W G+S F
Sbjct: 233 Q---ITEKTPTGKL-IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG---GNGNSQNCF 285
Query: 408 KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
H+ + + W S D + LW L
Sbjct: 286 YGHSQSIVSASWVGD--DKVISCSMDGSVRLWSLK 318
Score = 89.6 bits (223), Expect = 5e-19
Identities = 40/258 (15%), Positives = 87/258 (33%), Gaps = 37/258 (14%)
Query: 192 LATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWS-DLKTALQTVDDPFQLAEH 250
+ +G + + +E G ++ + G + D++W D K + + +
Sbjct: 178 VISGTV---MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFV--Y 232
Query: 251 NKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPG-VLATGDCKRNIHIW---TPREAG 306
P GH ++++ T +L + + IW
Sbjct: 233 QITEKT-------PTGKLIGHHGPISVLEFNDT--NKLLLSASDDGTLRIWHGGNGNS-- 281
Query: 307 AWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHT 366
Q GH+ S+ W +K + SCS+D S+R+W + + +
Sbjct: 282 -----QNCFYGHSQSIVSASWVGDDK--VISCSMDGSVRLWSLK---QNTLLALS-IVDG 330
Query: 367 SDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESST 426
+ ++ DG ++V+DL++ S + + + P ++
Sbjct: 331 VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN--SKSRSLYGNRDGILNPLPIPL-YAS 387
Query: 427 FASGGADDQIA--LWDLA 442
+ S +D I W+ A
Sbjct: 388 YQSSQDNDYIFDLSWNCA 405
Score = 67.7 bits (166), Expect = 5e-12
Identities = 25/270 (9%), Positives = 60/270 (22%), Gaps = 70/270 (25%)
Query: 171 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW---TPREAGAWQVDQKPLGGHTNSAE 227
+ SG + G ++W K I ++ L GH
Sbjct: 201 NHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTP-------TGKLIGHHGPIS 251
Query: 228 DLQWS------------------DLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFS 269
L+++ G F
Sbjct: 252 VLEFNDTNKLLLSASDDGTLRIWHGGN------------------GN-------SQNCFY 286
Query: 270 GHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP 329
GH + W + + ++ +W + + + + S
Sbjct: 287 GHSQSIVSASWVGD--DKVISCSMDGSVRLW---SLKQNTL-LALSIVDGVPIFAGRISQ 340
Query: 330 GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDV-NVISWNRTEPLIVSGGDDG 388
++ A +D + ++D + + + + N + S +D
Sbjct: 341 DGQK-YAVAFMDGQVNVYDLK---KLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDY 396
Query: 389 CIHV-WDLRRFKKGSSVATFKHHTAPVTTV 417
+ W+ + V +
Sbjct: 397 IFDLSWNC---AGNKISVAYSLQEGSVVAI 423
Score = 46.9 bits (112), Expect = 2e-05
Identities = 8/86 (9%), Positives = 22/86 (25%), Gaps = 6/86 (6%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
A ++++ + + L G+ + + + P +S D +
Sbjct: 345 YAVAFMDGQVNVY---DLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLS 401
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVIS 373
+ + V I
Sbjct: 402 WN--CAGNKISVAY-SLQEGSVVAIP 424
Score = 41.1 bits (97), Expect = 0.001
Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 21/111 (18%)
Query: 654 GHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCK--R 711
L + W+ + +LA G+ + + D + +
Sbjct: 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLAR------------------IVETDQEGKK 84
Query: 712 NIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ E TN V L WS + + + R+
Sbjct: 85 YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS-IVTGVENGELRL 134
Score = 38.4 bits (90), Expect = 0.009
Identities = 21/150 (14%), Positives = 40/150 (26%), Gaps = 53/150 (35%)
Query: 615 IWDLKT--ALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVL 672
+W++ + +Q K G + + SG + G ++W
Sbjct: 175 LWNVISGTVMQHF------------ELKETGGSSINAENHSGDGSLGVDVEWVDD--DKF 220
Query: 673 ATGDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLV 732
K I ++ + L+
Sbjct: 221 VIPGPKGAIFVYQ------------------ITEKTPTG------------------KLI 244
Query: 733 GHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
GH + L+++ K L S S D + RI
Sbjct: 245 GHHGPISVLEFNDTNKL-LLSASDDGTLRI 273
Score = 37.6 bits (88), Expect = 0.013
Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 705 ATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
D +I + + + +++ W+P ++ +LA + R+
Sbjct: 18 TQEDDTNSIDSSDDLDGFVKIL---KEIVKLDNIVSSTWNPLDESILAYGEKNSVARL 72
Score = 36.9 bits (86), Expect = 0.026
Identities = 6/59 (10%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
A ++++ + + L G+ + + + P +S D +
Sbjct: 345 YAVAFMDGQVNVY---DLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDL 400
Score = 34.6 bits (80), Expect = 0.14
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 728 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L H + ++W+ + S V+ +
Sbjct: 142 LNVLNFHRAPIVSVKWNKDGTH-IISMDVENVTIL 175
Score = 32.2 bits (74), Expect = 0.75
Identities = 4/61 (6%), Positives = 17/61 (27%), Gaps = 5/61 (8%)
Query: 702 GVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNR 761
+ + ++ +W + + + + S ++ A +D
Sbjct: 301 DKVISCSMDGSVRLW---SLKQNTL-LALSIVDGVPIFAGRISQDGQK-YAVAFMDGQVN 355
Query: 762 I 762
+
Sbjct: 356 V 356
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 96.0 bits (239), Expect = 4e-21
Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 23/172 (13%)
Query: 288 LATGDCKRNIHIW------------TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVL 335
A I + +++ K + +V + EK +L
Sbjct: 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185
Query: 336 ASCSVDLSIRIWDTRVINTKSCMLTLPN-AHTSDVNVISWNRTEPLIVSGGDDGCIHVWD 394
+ + + I+D R T + + N V+ I + +++ G G I +WD
Sbjct: 186 VALTNLSRVIIFDIR---TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWD 242
Query: 395 LRRFKKGSSVATFK-HHTAPVTTVEWHPTESS---TFASGGADDQIALWDLA 442
+R + ++ AP+T VE G + + +W+
Sbjct: 243 IR---FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291
Score = 87.2 bits (216), Expect = 3e-18
Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 22/164 (13%)
Query: 295 RNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTR---V 351
R+ ++ R ++ + NS+ SPGE L + S I+IW+ + V
Sbjct: 43 RSPNMGNLR----GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV 98
Query: 352 INTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSV------- 404
S LT +S V I+ DG I V + +++ S V
Sbjct: 99 GEVYSSSLTYD--CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCEC 156
Query: 405 ------ATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
F + V + E S + ++ ++D+
Sbjct: 157 IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR 200
Score = 84.1 bits (208), Expect = 4e-17
Identities = 34/292 (11%), Positives = 68/292 (23%), Gaps = 53/292 (18%)
Query: 192 LATGDCKRNIHIW-TPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTAL------QTV--- 241
L TG + I IW +++ + A +
Sbjct: 79 LITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVL 138
Query: 242 DDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW- 300
E K I L +F + + + E +L + I+
Sbjct: 139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFD 198
Query: 301 --TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCM 358
T + +V + L + I IWD R +
Sbjct: 199 IRTLERLQIIENS-----PRHGAVSSICIDEECCV-LILGTTRGIIDIWDIR---FNVLI 249
Query: 359 LTLPNAHTSDVN----VISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPV 414
+ + + + + ++V G + +W+ KG F +
Sbjct: 250 RSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF---VKGHCQYAFINSDEQP 306
Query: 415 TTVEWHPTESS------------------------TFASGGADDQIALWDLA 442
+ + P E + A I ++ L
Sbjct: 307 SMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLN 358
Score = 52.5 bits (126), Expect = 3e-07
Identities = 19/180 (10%), Positives = 39/180 (21%), Gaps = 42/180 (23%)
Query: 288 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSI 344
L G + I IW +W VE Q+ ++ S +
Sbjct: 229 LILGTTRGIIDIWDIRFNVLIRSWS---FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285
Query: 345 RIWDTRVINTKSCMLTL-------------PNAHTSDVNVISWNRTE-----------PL 380
IW+ C P + R+ +
Sbjct: 286 TIWN---FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKI 342
Query: 381 IVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
+++ I ++ L +V + + T + +
Sbjct: 343 LLTDEATSSIVMFSLNELSSSKAVISPSRFSDVF---------IPTQVTANLTMLLRKMK 393
Score = 47.1 bits (112), Expect = 2e-05
Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 16/129 (12%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
+F G + S + +L T + +I +++ E + S
Sbjct: 322 NFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNEL------SSSKAVISPSRFSDV 375
Query: 327 WSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEP--LIVSG 384
+ P + ++ + +R + + H +N IS + L+V+
Sbjct: 376 FIP----TQVTANLTMLLRKMKR---TSTHSVDDS-LYHHDIINSISTCEVDETPLLVAC 427
Query: 385 GDDGCIHVW 393
+ G I ++
Sbjct: 428 DNSGLIGIF 436
Score = 40.5 bits (95), Expect = 0.002
Identities = 25/196 (12%), Positives = 55/196 (28%), Gaps = 29/196 (14%)
Query: 580 NSYFIRHRGCINRVRTCQY---GSTTLAGVWGEVGKVGIWDLKTA--LQTV----DDPFQ 630
S+ I V CQ+ S + G + + IW+ + P
Sbjct: 250 RSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK-TFLTIWNFVKGHCQYAFINSDEQPSM 308
Query: 631 LAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAG 690
P +F G + S + +L T + +I +++ E
Sbjct: 309 EHFL-------PIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNE-L 360
Query: 691 AWSVYL-----YTNRFG-VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWS 744
+ S + +++ F T + + + + H + + +
Sbjct: 361 SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVD----DSLYHHDIINSISTC 416
Query: 745 P-GEKRVLASCSVDRS 759
E +L +C
Sbjct: 417 EVDETPLLVACDNSGL 432
Score = 32.1 bits (73), Expect = 0.79
Identities = 8/71 (11%), Positives = 18/71 (25%), Gaps = 12/71 (16%)
Query: 704 LATGDCKRNIHIW------------TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVL 751
A I + +++ K + +V + EK +L
Sbjct: 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185
Query: 752 ASCSVDRSNRI 762
+ + I
Sbjct: 186 VALTNLSRVII 196
Score = 30.9 bits (70), Expect = 1.7
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 711 RNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
R+ ++ R ++ + NS+ SPGE L + S +I
Sbjct: 43 RSPNMGNLR----GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKI 90
Score = 30.1 bits (68), Expect = 2.8
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 2/60 (3%)
Query: 704 LATGDCKRNIHIW-TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L TG + I IW +++V + P A S D +
Sbjct: 79 LITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPN-FDAFAVSSKDGQIIV 137
Score = 28.6 bits (64), Expect = 8.6
Identities = 6/74 (8%), Positives = 13/74 (17%), Gaps = 9/74 (12%)
Query: 692 WSVYLYTNRFGVLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEK 748
+L + I+ T + +V +
Sbjct: 173 RMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS-----PRHGAVSSICIDEECC 227
Query: 749 RVLASCSVDRSNRI 762
L + I
Sbjct: 228 V-LILGTTRGIIDI 240
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 94.1 bits (235), Expect = 6e-21
Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 13/158 (8%)
Query: 288 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSI 344
+ TG K + +W P V Q + N + + P L ++
Sbjct: 66 VYTG-GKGCVKVWDISHPGNKS--PVSQLDCLNRDNYIRSCKLLPDGCT-LIVGGEASTL 121
Query: 345 RIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSV 404
IWD T L + ++ + + S DG I VWDL + V
Sbjct: 122 SIWDLAA-PTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDL---HNQTLV 176
Query: 405 ATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
F+ HT + ++ + + +GG D+ + WDL
Sbjct: 177 RQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLR 213
Score = 88.3 bits (220), Expect = 5e-19
Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 14/156 (8%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRI 346
L G + IW A ++ + L + L SP +V SC D +I +
Sbjct: 112 LIVGGEASTLSIWDL-AAPTPRI-KAELTSSAPACYALAISPDS--KVCFSCCSDGNIAV 167
Query: 347 WDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVAT 406
WD ++ + HT + I + + +GG D + WDLR +G +
Sbjct: 168 WDLH---NQTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR---EGRQLQQ 220
Query: 407 FKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
T+ + ++ + PT A G + + +
Sbjct: 221 HD-FTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVN 254
Score = 82.5 bits (205), Expect = 4e-17
Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 23/160 (14%)
Query: 287 VLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDL 342
V + NI +W + GHT+ + S G L + +D
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTL-------VRQFQGHTDGASCIDISNDG--TKLWTGGLDN 205
Query: 343 SIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGS 402
++R WD R + TS + + + T + G + + V +
Sbjct: 206 TVRSWDLR---EGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV----NKP 256
Query: 403 SVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
H + V ++++ F S G D+ + W
Sbjct: 257 DKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP 295
Score = 77.5 bits (192), Expect = 2e-15
Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
Query: 317 GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNR 376
T+ + L + P + LA ++ + K L + H S V + +
Sbjct: 222 DFTSQIFSLGYCPTGEW-LAVGMESSNVEVLHV----NKPDKYQL-HLHESCVLSLKFAY 275
Query: 377 TEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQI 436
VS G D ++ W G+S+ K ++ V + + + +G D +
Sbjct: 276 CGKWFVSTGKDNLLNAWRT---PYGASIFQSK-ESSSVLSCDISV-DDKYIVTGSGDKKA 330
Query: 437 ALWDL 441
++++
Sbjct: 331 TVYEV 335
Score = 73.3 bits (181), Expect = 4e-14
Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 11/133 (8%)
Query: 314 PLVGH--TNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNV 371
G + + + D I R + TL H V
Sbjct: 2 YFQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR---HARQINTL--NHGEVVCA 56
Query: 372 ISWNRTEPLIVSGGDDGCIHVWDL--RRFKKGSSVATFKHHTAPVTTVEWHPTESSTFAS 429
++ + + +GG C+ VWD+ K S + + + + P + T
Sbjct: 57 VTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIV 114
Query: 430 GGADDQIALWDLA 442
GG +++WDLA
Sbjct: 115 GGEASTLSIWDLA 127
Score = 64.4 bits (158), Expect = 4e-11
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
Query: 288 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLS 343
LA G N+ + P + L H + V L+++ G + S D
Sbjct: 239 LAVGMESSNVEVLHVNKPDKY--------QLHLHESCVLSLKFAYCG--KWFVSTGKDNL 288
Query: 344 IRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDL 395
+ W T + + +S V + + IV+G D V+++
Sbjct: 289 LNAWRTP---YGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 34.4 bits (80), Expect = 0.12
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 7/62 (11%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSN 760
+ TG K + +W P V Q + N + + P L +
Sbjct: 66 VYTG-GKGCVKVWDISHPGNKS--PVSQLDCLNRDNYIRSCKLLPDGCT-LIVGGEASTL 121
Query: 761 RI 762
I
Sbjct: 122 SI 123
Score = 34.4 bits (80), Expect = 0.14
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
L G + IW A ++ + L + L SP +V SC D + +
Sbjct: 112 LIVGGEASTLSIWDL-AAPTPRI-KAELTSSAPACYALAISPDS--KVCFSCCSDGNIAV 167
Score = 32.5 bits (75), Expect = 0.60
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 14/63 (22%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRS 759
LA G N+ + P + L H + V L+++ G + S D
Sbjct: 239 LAVGMESSNVEVLHVNKPDKY--------QLHLHESCVLSLKFAYCG--KWFVSTGKDNL 288
Query: 760 NRI 762
Sbjct: 289 LNA 291
Score = 30.9 bits (71), Expect = 1.5
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 13/64 (20%)
Query: 703 VLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDR 758
V + NI +W + GHT+ + S G L + +D
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTL-------VRQFQGHTDGASCIDISNDG--TKLWTGGLDN 205
Query: 759 SNRI 762
+ R
Sbjct: 206 TVRS 209
Score = 29.8 bits (68), Expect = 3.3
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 724 WQVD---QKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
W+ ++SV S +K + + S D+ +
Sbjct: 292 WRTPYGASIFQSKESSSVLSCDISVDDKY-IVTGSGDKKATV 332
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 95.2 bits (236), Expect = 9e-21
Identities = 48/409 (11%), Positives = 120/409 (29%), Gaps = 30/409 (7%)
Query: 191 VLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQLAEH 250
++ K I + + W+ G ++ + +Q S TA + +
Sbjct: 18 LVFAII-KNCILSFKYQSPNHWEF----AGKWSDDFDKIQESRNTTAKEQQGQSSENENE 72
Query: 251 NKKRGKGPGIPTP--------PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTP 302
NKK G P + + +S E ++A D +++ ++
Sbjct: 73 NKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDV 132
Query: 303 REAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP 362
+ + + + + + + + + D I +
Sbjct: 133 DKTSKNVLKLRKRFCFSKRPNAISIAEDDTT-VIIADKFGDVYSIDINSIPEEKFTQEPI 191
Query: 363 NAHTSDVNVISW---NRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEW 419
H S + + + I++ D I + + H V+++
Sbjct: 192 LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ--CFIVDKWLFGHKHFVSSICC 249
Query: 420 HPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWH 479
S G DD+I WD + + L L + +
Sbjct: 250 GK--DYLLLSAGGDDKIFAWDWK----TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENN 303
Query: 480 PQLPGTI--ISTANSGFNIFRTISDLPSQLLFIHLGQKEIKELHWHP--QLPGTIISTAN 535
+ + I + + + + ++ + + +K+ +L P +IS +
Sbjct: 304 DIIEFAVSKIIKSKNLPFVAFFVEATKC-IIILEMSEKQKGDLALKQIITFPYNVISLSA 362
Query: 536 SGFNIFRTISMSNLTSTEEDNERELEDDESEGSGDEDRRKDPVMNSYFI 584
T+ + +++ + +E + +E S + K +S I
Sbjct: 363 HNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNNEKSNEFDSAII 411
Score = 88.6 bits (219), Expect = 1e-18
Identities = 42/308 (13%), Positives = 103/308 (33%), Gaps = 18/308 (5%)
Query: 256 KGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPL 315
L A+ + + + D +++ + Q+P+
Sbjct: 133 DKTSKNVLKLRKRFCFSKRPNAISIAEDDT-TVIIADKFGDVYSIDINSIPEEKFTQEPI 191
Query: 316 VGHTNSVEDLQWSP--GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVIS 373
+GH + + D+ + + + D I+I + H V+ I
Sbjct: 192 LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP---QCFIVDKWLFGHKHFVSSIC 248
Query: 374 WNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGAD 433
+ L++S G D I WD K G +++TF +++ ++ + + +
Sbjct: 249 CGKDY-LLLSAGGDDKIFAWDW---KTGKNLSTFDYNSL----IKPYLNDQHLAPPRFQN 300
Query: 434 DQIALWDLAVERDSEIEQRE--AELKDLPSQLLFIHLGQKEIKELHWHP--QLPGTIIST 489
+ + + AV + + + A + ++ + + +K+ +L P +IS
Sbjct: 301 ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISL 360
Query: 490 ANSGFNIFRTISDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIFRTISMSNL 549
+ T+ + S + + + L+ + + S I SNL
Sbjct: 361 SAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNNEKSNEFDSAIIQSVQGDSNL 420
Query: 550 TSTEEDNE 557
+ +E+
Sbjct: 421 VTKKEEIY 428
Score = 68.6 bits (167), Expect = 3e-12
Identities = 49/331 (14%), Positives = 98/331 (29%), Gaps = 30/331 (9%)
Query: 131 TSTEEDNERELEDDENDPFQLAEHNKKRGKGPGIPTP-PLFSFSGHLTEGFAMDWSSTEP 189
+T ++ + + ++EN+ +L + K P P + + +S E
Sbjct: 56 NTTAKEQQGQSSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES 115
Query: 190 GVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWS-DLKTAL---QTVDDPF 245
++A D +++ ++ + + + + + + D T + + D +
Sbjct: 116 RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDV-Y 174
Query: 246 QLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWS--STEPGVLATGDCKRNIHIWTPR 303
+ ++ K P GH++ + S + T D +I I
Sbjct: 175 SIDINSIPEEKFTQEP------ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKIS--- 225
Query: 304 EAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP- 362
+ K L GH + V + +L S D I WD T + T
Sbjct: 226 HYPQCFIVDKWLFGHKHFVSSICCGKDY--LLLSAGGDDKIFAWD---WKTGKNLSTFDY 280
Query: 363 NAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPT 422
N+ D V + + K VA F T + +E
Sbjct: 281 NSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEK 340
Query: 423 ESSTFASGGADDQIAL----WDLAVERDSEI 449
+ A I L+ D
Sbjct: 341 QKGDLA---LKQIITFPYNVISLSAHNDEFQ 368
Score = 48.9 bits (116), Expect = 5e-06
Identities = 27/205 (13%), Positives = 60/205 (29%), Gaps = 25/205 (12%)
Query: 583 FIRHRGCINRVRTCQYGSTTLAGVW-GEVGKVGIWDLKTALQTVDDPFQLAEHNKKRGKG 641
F + CI + AG W + K+ TA + + NKK
Sbjct: 20 FAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79
Query: 642 PGIPTP--------PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWS 693
G P + + +S E ++A D +++ ++ +
Sbjct: 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV 139
Query: 694 VYLYTNRFGV--------------LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVE 739
+ L + D +++ + Q+P++GH + +
Sbjct: 140 LKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLT 199
Query: 740 DLQWSP--GEKRVLASCSVDRSNRI 762
D+ + + + D +I
Sbjct: 200 DVHLIKDSDGHQFIITSDRDEHIKI 224
Score = 37.8 bits (87), Expect = 0.012
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 7/72 (9%)
Query: 691 AWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRV 750
++F + T D +I I + K L GH + V + +
Sbjct: 202 HLIKDSDGHQF--IITSDRDEHIKIS---HYPQCFIVDKWLFGHKHFVSSICCGKDY--L 254
Query: 751 LASCSVDRSNRI 762
L S D
Sbjct: 255 LLSAGGDDKIFA 266
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 93.0 bits (232), Expect = 1e-20
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 15/169 (8%)
Query: 280 WSSTEPGVLATGDCKRNIHIW-TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASC 338
S+ +P +L + + + W + + V + GH++ V+D + S
Sbjct: 25 TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY-ALSA 83
Query: 339 SVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRF 398
S D ++R+WD + T H SDV + ++ +I+SG D I VW +
Sbjct: 84 SWDKTLRLWD---VATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI--- 136
Query: 399 KKGSSVATFKHHTAPVTTVEWHPTES-----STFASGGADDQIALWDLA 442
KG +AT H V+ V P E T S G D + W+L
Sbjct: 137 -KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Score = 90.3 bits (225), Expect = 8e-20
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 7/140 (5%)
Query: 304 EAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWD--TRVINTKSCMLTL 361
+ V + L GH V L S G+ +L S S D ++ W + +
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 362 PNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHP 421
H+ V + +S D + +WD+ G + F H + V +V+
Sbjct: 62 -KGHSHIVQDCTLTADGAYALSASWDKTLRLWDV---ATGETYQRFVGHKSDVMSVDIDK 117
Query: 422 TESSTFASGGADDQIALWDL 441
++S SG D I +W +
Sbjct: 118 -KASMIISGSRDKTIKVWTI 136
Score = 88.0 bits (219), Expect = 5e-19
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 15/136 (11%)
Query: 312 QKPLVGHTNSVEDLQWSPGEK-----RVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHT 366
L+GH + V ++ P EK + S D ++ W+ +N H
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN---LNQFQIEADF-IGHN 196
Query: 367 SDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESST 426
S++N ++ + LI S G DG I +W+L ++ T V ++ + P
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLWNL---AAKKAMYTLSAQD-EVFSLAFSP-NRYW 251
Query: 427 FASGGADDQIALWDLA 442
A+ I ++ L
Sbjct: 252 LAAAT-ATGIKVFSLD 266
Score = 79.5 bits (197), Expect = 3e-16
Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 21/140 (15%)
Query: 312 QKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVN 370
+ +GH +++ L SP G ++AS D I +W+ + K M TL + +V
Sbjct: 189 EADFIGHNSNINTLTASPDG--TLIASAGKDGEIMLWN---LAAKKAMYTL--SAQDEVF 241
Query: 371 VISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH--------HTAPVTTVEWHPT 422
++++ + + I V+ L V + ++ W
Sbjct: 242 SLAFSPNRYWLAAATAT-GIKVFSL---DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA- 296
Query: 423 ESSTFASGGADDQIALWDLA 442
+ T +G D+ I +W +
Sbjct: 297 DGQTLFAGYTDNVIRVWQVM 316
Score = 55.2 bits (134), Expect = 3e-08
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 17/99 (17%)
Query: 308 WQVD----QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTL-- 361
W + L + V L +SP LA+ + I+++ ++ + + L
Sbjct: 223 WNLAAKKAMYTLSAQ-DEVFSLAFSPNRYW-LAAAT-ATGIKVFS---LDPQYLVDDLRP 276
Query: 362 -----PNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDL 395
A ++W+ + +G D I VW +
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 37.1 bits (87), Expect = 0.017
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 5/56 (8%)
Query: 297 IHIW---TPREAGAWQVD-QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWD 348
I ++ + + L WS + L + D IR+W
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT-LFAGYTDNVIRVWQ 314
Score = 36.7 bits (86), Expect = 0.023
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 720 EAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ V + L GH V L S G+ +L S S D++
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLIS 44
Score = 36.3 bits (85), Expect = 0.027
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 405 ATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
T + H VT++ + + S D + W L
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT 48
Score = 33.6 bits (78), Expect = 0.21
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 704 LATGDCKRNIHIW-TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L + + + W + + V + GH++ V+D + S S D++ R+
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY-ALSASWDKTLRL 91
Score = 32.1 bits (74), Expect = 0.59
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 728 QKPLVGHTNSVEDLQWSPGEK-----RVLASCSVDRSNRI 762
L+GH + V ++ P EK + S D+ +
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Score = 31.7 bits (73), Expect = 0.94
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 729 KPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
+ VGH + V + ++ S S D++ ++
Sbjct: 101 QRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKV 133
Score = 30.2 bits (69), Expect = 2.6
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 728 QKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
+ +GH +++ L SP G ++AS D +
Sbjct: 189 EADFIGHNSNINTLTASPDG--TLIASAGKDGEIML 222
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 92.6 bits (231), Expect = 1e-20
Identities = 34/184 (18%), Positives = 61/184 (33%), Gaps = 21/184 (11%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVE 323
+++ H + S T + I +W + +V + H + V
Sbjct: 134 LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW---QND--KVIKTFSGIHNDVVR 188
Query: 324 DLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEP--LI 381
L SCS D I++ D ++T + T H S V I P I
Sbjct: 189 HLAVVDDGH--FISCSNDGLIKLVD---MHTGDVLRTY-EGHESFVYCIKLL---PNGDI 239
Query: 382 VSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
VS G+D + +W + GS + +V+ G +D+ + ++
Sbjct: 240 VSCGEDRTVRIWSK---ENGSLKQVITLPAISIWSVDCMSN--GDIIVGSSDNLVRIFSQ 294
Query: 442 AVER 445
R
Sbjct: 295 EKSR 298
Score = 91.4 bits (228), Expect = 3e-20
Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 9/128 (7%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
L GH V D+ K +AS S D ++R+W + + + +N +
Sbjct: 12 ATLKGHDQDVRDVVAVDDSK--VASVSRDGTVRLWS---KDDQWLGTVV-YTGQGFLNSV 65
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
++ + L++ GG D I+ L + T H V ++ + SG
Sbjct: 66 CYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQD---GVVISGSW 122
Query: 433 DDQIALWD 440
D +W
Sbjct: 123 DKTAKVWK 130
Score = 90.3 bits (225), Expect = 8e-20
Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 26/182 (14%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVE 323
PL++ GH ++ + GV+ +G + +W + G+ L H SV
Sbjct: 96 PLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVW---KEGSLV---YNLQAHNASVW 146
Query: 324 DLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISW---NRTEPL 380
D + + + S D +I++W + T H V ++
Sbjct: 147 DAKVVSFSENKFLTASADKTIKLWQ-----NDKVIKTFSGIHNDVVRHLAVVDDGH---- 197
Query: 381 IVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
+S +DG I + D+ G + T++ H + V ++ P + S G D + +W
Sbjct: 198 FISCSNDGLIKLVDM---HTGDVLRTYEGHESFVYCIKLLP--NGDIVSCGEDRTVRIWS 252
Query: 441 LA 442
Sbjct: 253 KE 254
Score = 62.9 bits (154), Expect = 1e-10
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 8/102 (7%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ GH + V ++ P + SC D ++RIW S + + +
Sbjct: 219 RTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKE---NGSLKQVI-TLPAISIWSV 272
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPV 414
I+ G D + ++ + + +S K
Sbjct: 273 DCMSNG-DIIVGSSDNLVRIFSQEK-SRWASEDEIKGELRSG 312
Score = 33.3 bits (77), Expect = 0.30
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ GH + V ++ P + SC DR+ RI
Sbjct: 219 RTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRI 250
Score = 32.5 bits (75), Expect = 0.52
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L GH V D+ K +AS S D + R+
Sbjct: 12 ATLKGHDQDVRDVVAVDDSK--VASVSRDGTVRL 43
Score = 31.7 bits (73), Expect = 0.88
Identities = 4/43 (9%), Positives = 10/43 (23%), Gaps = 5/43 (11%)
Query: 724 WQVD----QKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
W D + + + + ++ L D
Sbjct: 44 WSKDDQWLGTVVYTGQGFLNSVCYDSEKEL-LLFGGKDTMING 85
Score = 31.7 bits (73), Expect = 0.88
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 717 TPREAGAWQVD----QKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ L+GH +V L + G V+ S S D++ ++
Sbjct: 82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG---VVISGSWDKTAKV 128
Score = 29.8 bits (68), Expect = 3.1
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 724 WQVDQ--KPLVG-HTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
WQ D+ K G H + V L SCS D ++
Sbjct: 170 WQNDKVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKL 209
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 93.9 bits (234), Expect = 2e-20
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 19/158 (12%)
Query: 285 PGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSI 344
++ +G R + +W A + L GHT++V + + + S S D ++
Sbjct: 169 DNIIISGSTDRTLKVW---NAETGEC-IHTLYGHTSTVRCMHLHE---KRVVSGSRDATL 221
Query: 345 RIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSV 404
R+WD I T C+ L H + V + ++ +VSG D + VWD + +
Sbjct: 222 RVWD---IETGQCLHVL-MGHVAAVRCVQYDGR--RVVSGAYDFMVKVWDPET---ETCL 272
Query: 405 ATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
T + HT V ++++ SG D I +WD+
Sbjct: 273 HTLQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWDVE 307
Score = 92.0 bits (229), Expect = 1e-19
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 28/182 (15%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTN 320
+ + GH + M + +G + +W T + L+GH
Sbjct: 191 CIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQC-------LHVLMGHVA 240
Query: 321 SVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPL 380
+V +Q+ R + S + D +++WD T++C+ TL HT+ V + ++
Sbjct: 241 AVRCVQYDG---RRVVSGAYDFMVKVWD---PETETCLHTL-QGHTNRVYSLQFDGI--H 291
Query: 381 IVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
+VSG D I VWD+ + G+ + T H + + +E + SG AD + +WD
Sbjct: 292 VVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWD 345
Query: 441 LA 442
+
Sbjct: 346 IK 347
Score = 90.0 bits (224), Expect = 4e-19
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 23/143 (16%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTL--PNAHTSDVN 370
L GH + ++ +L S + D +++IWD I T C+ TL PN H S V
Sbjct: 313 HTLTGHQSLTSGMELKD---NILVSGNADSTVKIWD---IKTGQCLQTLQGPNKHQSAVT 366
Query: 371 VISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATF-----KHHTAPVTTVEWHPTESS 425
+ +N+ +++ DDG + +WD K G + V + T
Sbjct: 367 CLQFNKN--FVITSSDDGTVKLWD---LKTGEFIRNLVTLESGGSGGVVWRIRASNT-KL 420
Query: 426 TFASGGAD----DQIALWDLAVE 444
A G + ++ + D V+
Sbjct: 421 VCAVGSRNGTEETKLLVLDFDVD 443
Score = 68.5 bits (168), Expect = 3e-12
Identities = 25/135 (18%), Positives = 36/135 (26%), Gaps = 12/135 (8%)
Query: 308 WQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTS 367
+ +PL V + + A W L H
Sbjct: 65 EEGIDEPLHIKRRKVIKPGFIHSPWK-SAYIRQHRIDTNWRR---GELKSPKVLK-GHDD 119
Query: 368 DVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTF 427
V IVSG DD + VW G + T HT V + +
Sbjct: 120 HVIT-CLQFCGNRIVSGSDDNTLKVWSA---VTGKCLRTLVGHTGGVWSSQMRDN---II 172
Query: 428 ASGGADDQIALWDLA 442
SG D + +W+
Sbjct: 173 ISGSTDRTLKVWNAE 187
Score = 38.8 bits (91), Expect = 0.006
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 21/102 (20%)
Query: 672 LATGDCKRNIHIWTPR-----------EAGAWSVYLYTNRFGVLATGDCKRNIHIWTPRE 720
+ +G + +W+ G WS + N + +G R + +W
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI---IISGSTDRTLKVW---N 185
Query: 721 AGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
A + L GHT++V + + + S S D + R+
Sbjct: 186 AETGEC-IHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRV 223
Score = 33.8 bits (78), Expect = 0.24
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 5/92 (5%)
Query: 672 LATGDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQV-DQKP 730
+ TG C + + ++ + N + T + +W + +
Sbjct: 346 IKTGQCLQTLQGPNKHQSAVTCLQFNKNF---VITSSDDGTVKLWDLKTGEFIRNLVTLE 402
Query: 731 LVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
G V ++ S K V A S + +
Sbjct: 403 SGGSGGVVWRIRASN-TKLVCAVGSRNGTEET 433
Score = 32.3 bits (74), Expect = 0.69
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L GH + ++ +L S + D + +I
Sbjct: 313 HTLTGHQSLTSGMELKD---NILVSGNADSTVKI 343
Score = 31.1 bits (71), Expect = 1.4
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 19/94 (20%)
Query: 672 LATGDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIW---TPREAGAWQVDQ 728
TG+C IH + ++L+ R + +G + +W T +
Sbjct: 186 AETGEC---IHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQC-------L 232
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L+GH +V +Q+ R + S + D ++
Sbjct: 233 HVLMGHVAAVRCVQYDG---RRVVSGAYDFMVKV 263
Score = 30.3 bits (69), Expect = 2.7
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 672 LATGDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPL 731
+ TG+C IH T ++ + L N L +G+ + IW + G +
Sbjct: 306 VETGNC---IHTLTGHQSLTSGMELKDNI---LVSGNADSTVKIWDI-KTGQCLQTLQGP 358
Query: 732 VGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
H ++V LQ++ + + S D + ++
Sbjct: 359 NKHQSAVTCLQFNK---NFVITSSDDGTVKL 386
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 92.3 bits (230), Expect = 3e-20
Identities = 23/193 (11%), Positives = 54/193 (27%), Gaps = 24/193 (12%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVE 323
P+ + D V+AT + ++ + ++ +
Sbjct: 163 PMMVLQLP-ERCYCADVIYPM-AVVATAERGLIVYQLENQP----SEFRRIESPLKHQHR 216
Query: 324 DLQWSPGEKRV---LASCSVDLSIRIWDTRVINTKSCMLTL-----------PNAHTSDV 369
+ ++ A S++ + I N T V
Sbjct: 217 CVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAV 276
Query: 370 NVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFAS 429
N I+++ + + G DG WD + + T + P++ ++ + FA
Sbjct: 277 NGIAFHPVHGTLATVGSDGRFSFWDK---DARTKLKTSEQLDQPISACCFNHN-GNIFAY 332
Query: 430 GGADDQIALWDLA 442
+ D +
Sbjct: 333 ASSYDWSKGHEFY 345
Score = 91.2 bits (227), Expect = 8e-20
Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 24/179 (13%)
Query: 267 SFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQ 326
S G T GF +S + + + + D + +S+ L
Sbjct: 2 SLFGT-TSGFGTSGTS----MFGSATTDNHNPMK----------DIEVTSSPDDSIGCLS 46
Query: 327 WSP--GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSG 384
+SP L + S +R W+ + + ++ HT V + W+ + +
Sbjct: 47 FSPPTLPGNFLIAGSWANDVRCWEVQ-DSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTA 104
Query: 385 GDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHP-TESSTFASGGADDQIALWDLA 442
D +WDL + H APV T+ W S +G D + WD
Sbjct: 105 SCDKTAKMWDL----SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
Score = 81.5 bits (202), Expect = 1e-16
Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 15/148 (10%)
Query: 295 RNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINT 354
++ W +++G Q K HT V D+ WS +V + S D + ++WD +++
Sbjct: 64 NDVRCWEVQDSG--QTIPKAQQMHTGPVLDVCWSDDGSKV-FTASCDKTAKMWD---LSS 117
Query: 355 KSCMLTLPNAHTSDVNVISWNRT--EPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTA 412
+ + H + V I W + +++G D + WD R + + +
Sbjct: 118 NQA-IQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS---SNPMMVLQLPER 172
Query: 413 PVTTVEWHPTESSTFASGGADDQIALWD 440
+P + A+ + +
Sbjct: 173 CYCADVIYPM--AVVATAERGLIVYQLE 198
Score = 73.1 bits (180), Expect = 7e-14
Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 19/159 (11%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQW--SPGEKRVLASCSVDLSIR 345
+ T C + +W + + H V+ + W +P + + S D +++
Sbjct: 101 VFTASCDKTAKMW-DLSSNQ----AIQIAQHDAPVKTIHWIKAPNYSC-VMTGSWDKTLK 154
Query: 346 IWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVA 405
WDTR + + M+ L P+ V + + V+ L +
Sbjct: 155 FWDTR---SSNPMMVL-QLPERCYCADVIY---PMAVVATAERGLIVYQLEN-QPSEFRR 206
Query: 406 TFKHHTAPVTTVEWHP---TESSTFASGGADDQIALWDL 441
V + + FA G + ++A+ +
Sbjct: 207 IESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYI 245
Score = 60.4 bits (147), Expect = 9e-10
Identities = 26/231 (11%), Positives = 54/231 (23%), Gaps = 52/231 (22%)
Query: 168 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAE 227
P+ + D V+AT + ++ + ++ + PL
Sbjct: 163 PMMVLQLP-ERCYCADVIYPM-AVVATAERGLIVYQLE-NQPSEFRRIESPLKHQHRCVA 219
Query: 228 ---DLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTE 284
D Q AL +++ P P F+F H + G
Sbjct: 220 IFKDKQNKPTGFALGSIEG------RVAIHYINPPNPAKDNFTFKCHRSNG--------- 264
Query: 285 PGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSI 344
+V + + P LA+ D
Sbjct: 265 --------------------------TNTSAPQDIYAVNGIAFHPVHGT-LATVGSDGRF 297
Query: 345 RIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDL 395
WD + ++ + T ++ +N + +
Sbjct: 298 SFWD---KDARTKLKTSEQ-LDQPISACCFNHNGNIFAYASSYDWSKGHEF 344
Score = 35.7 bits (83), Expect = 0.054
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 711 RNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
++ W +++G Q K HT V D+ WS +V + S D++ ++
Sbjct: 64 NDVRCWEVQDSG--QTIPKAQQMHTGPVLDVCWSDDGSKV-FTASCDKTAKM 112
Score = 33.4 bits (77), Expect = 0.31
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 12/62 (19%)
Query: 703 VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP--GEKRVLASCSVDRSN 760
+ + + + D + +S+ L +SP L + S
Sbjct: 17 MFGSATTDNHNPMK----------DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDV 66
Query: 761 RI 762
R
Sbjct: 67 RC 68
Score = 31.5 bits (72), Expect = 1.00
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 411 TAPVTTVEWHPTESSTFASGGADDQIALWDLAV 443
+ TT + + +S F S D+ + D+ V
Sbjct: 2 SLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEV 34
Score = 31.5 bits (72), Expect = 1.3
Identities = 16/140 (11%), Positives = 35/140 (25%), Gaps = 28/140 (20%)
Query: 648 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW-----------TPREAGAWSVYL 696
P+ + D V+AT + ++ +P + V +
Sbjct: 163 PMMVLQLP-ERCYCADVIYPM-AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAI 220
Query: 697 YTNRFG-----VLATGDCKRNIHIWTPREAGA---------WQVDQKPLVGHTNSVEDLQ 742
+ ++ L + + + IH P +V +
Sbjct: 221 FKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIA 280
Query: 743 WSPGEKRVLASCSVDRSNRI 762
+ P LA+ D
Sbjct: 281 FHPVHGT-LATVGSDGRFSF 299
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 91.5 bits (228), Expect = 5e-20
Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 20/141 (14%)
Query: 313 KPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVN- 370
K VGH + V + +SP R + S + I++W+ K H+ V+
Sbjct: 112 KRFVGHQSEVYSVAFSPDN--RQILSAGAEREIKLWNIL-GECKFSSAEK-ENHSDWVSC 167
Query: 371 ---------VISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHP 421
P S G DG + VW+ TFK H + V + P
Sbjct: 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT----NFQIRYTFKAHESNVNHLSISP 223
Query: 422 TESSTFASGGADDQIALWDLA 442
A+GG D ++ +WD+
Sbjct: 224 -NGKYIATGGKDKKLLIWDIL 243
Score = 89.6 bits (223), Expect = 2e-19
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 288 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSI 344
L +G + + IW + G + + K L GH + V DL S S S D ++
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF-AISSSWDKTL 100
Query: 345 RIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSV 404
R+WD + T + H S+V ++++ I+S G + I +W++ + S
Sbjct: 101 RLWD---LRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSS 155
Query: 405 ATFKHHTAPVTTVEWHP---------TESSTFASGGADDQIALWDL 441
A ++H+ V+ V + P + FAS G D ++ +W+
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT 201
Score = 84.2 bits (209), Expect = 1e-17
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 16/145 (11%)
Query: 308 WQVDQKPLVGHTNSV------EDLQWSPGEKRVLASCSVDLSIRIWDT----RVINTKSC 357
V + L GH++ V + + L S S D ++ IW +
Sbjct: 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPV-LISGSRDKTVMIWKLYEEEQNGYFGIP 68
Query: 358 MLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTV 417
L H V+ ++ ++ +S D + +WDL + G++ F H + V +V
Sbjct: 69 HKAL-TGHNHFVSDLALSQENCFAISSSWDKTLRLWDL---RTGTTYKRFVGHQSEVYSV 124
Query: 418 EWHPTESSTFASGGADDQIALWDLA 442
+ P ++ S GA+ +I LW++
Sbjct: 125 AFSP-DNRQILSAGAEREIKLWNIL 148
Score = 83.0 bits (206), Expect = 3e-17
Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 22/149 (14%)
Query: 308 WQVDQK---PLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPN 363
W + + H ++V L SP G + +A+ D + IWD I +
Sbjct: 199 WNTNFQIRYTFKAHESNVNHLSISPNG--KYIATGGKDKKLLIWD---ILNLTYPQRE-F 252
Query: 364 AHTSDVNVISWNRTEPLIVSGGDDGCIHVWDL----------RRFKKGSSVATFKHHTAP 413
S +N I++N + G D + +++L + + K
Sbjct: 253 DAGSTINQIAFNPKLQWVAVGTDQ-GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ 311
Query: 414 VTTVEWHPTESSTFASGGADDQIALWDLA 442
T++ W+ +G D I +
Sbjct: 312 CTSLAWNA-LGKKLFAGFTDGVIRTFSFE 339
Score = 57.6 bits (140), Expect = 5e-09
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 19/114 (16%)
Query: 339 SVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEP------LIVSGGDDGCIHV 392
+ + S+ I K +L H+ V I ++ +++SG D + +
Sbjct: 2 ADNSSLDIQV-----VKRGILE---GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMI 53
Query: 393 WDLRR----FKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
W L G H V+ + E+ S D + LWDL
Sbjct: 54 WKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLR 106
Score = 45.3 bits (108), Expect = 5e-05
Identities = 10/62 (16%), Positives = 15/62 (24%), Gaps = 6/62 (9%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
L T + G L W+ K+ L + D IR +
Sbjct: 283 LMTQSKAP-----VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK-LFAGFTDGVIRTF 336
Query: 348 DT 349
Sbjct: 337 SF 338
Score = 37.6 bits (88), Expect = 0.015
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSN 760
L +G + + IW + G + + K L GH + V DL S S S D++
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF-AISSSWDKTL 100
Query: 761 RI 762
R+
Sbjct: 101 RL 102
Score = 34.9 bits (81), Expect = 0.10
Identities = 9/59 (15%), Positives = 13/59 (22%), Gaps = 6/59 (10%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L T + G L W+ K+ L + D R
Sbjct: 283 LMTQSKAP-----VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK-LFAGFTDGVIRT 335
Score = 32.6 bits (75), Expect = 0.51
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 724 WQVDQKPLVGHTNSV------EDLQWSPGEKRVLASCSVDRSNRI 762
V + L GH++ V + + L S S D++ I
Sbjct: 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPV-LISGSRDKTVMI 53
Score = 31.8 bits (73), Expect = 0.90
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 729 KPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
K VGH + V + +SP R + S +R ++
Sbjct: 112 KRFVGHQSEVYSVAFSPDN--RQILSAGAEREIKL 144
Score = 31.4 bits (72), Expect = 1.3
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 724 WQVDQK---PLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
W + + H ++V L SP G + +A+ D+ I
Sbjct: 199 WNTNFQIRYTFKAHESNVNHLSISPNG--KYIATGGKDKKLLI 239
Score = 29.5 bits (67), Expect = 4.4
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 11/68 (16%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP---------GEKRVLASC 754
+ + +R I +W G + H++ V +++SP AS
Sbjct: 133 ILSAGAEREIKLWNI--LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 755 SVDRSNRI 762
D ++
Sbjct: 191 GWDGRLKV 198
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40
repeat, beta propeller, recombination; 1.90A
{Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Length = 397
Score = 91.7 bits (228), Expect = 6e-20
Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 30/200 (15%)
Query: 265 LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNS 321
+ S ++D S G++ATG + I T R ++ ++ ++NS
Sbjct: 179 VESPMTPSQFATSVDISER--GLIATGFNNGTVQISELSTLRPLYNFESQH-SMINNSNS 235
Query: 322 VEDLQWSPGEKRVLASCSVD---LSIRIWDT---------RVINTKSCMLTLPNAHTSDV 369
+ +++SP LA I +++T V S AH+S V
Sbjct: 236 IRSVKFSPQGSL-LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV 294
Query: 370 NVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPV----TTVEWHPTESS 425
+S+N + + S G DG + WD++ + T H + +
Sbjct: 295 MSLSFNDSGETLCSAGWDGKLRFWDVKT---KERITTLNMHCDDIEIEEDILAVDE-HGD 350
Query: 426 TFASGGADD---QIALWDLA 442
+ A G D W
Sbjct: 351 SLAEPGVFDVKFLKKGWRSG 370
Score = 82.1 bits (203), Expect = 9e-17
Identities = 26/211 (12%), Positives = 67/211 (31%), Gaps = 52/211 (24%)
Query: 266 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW--------------TPREAGAWQVD 311
+ S L D K +IW Q
Sbjct: 129 WGASNDRLLS----------HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 178
Query: 312 QKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRIWDT---RVINTKSCMLTLPNAHTS 367
+ + + + S G ++A+ + +++I + R + ++ +++
Sbjct: 179 VESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTLRPLYNFESQHSM-INNSN 234
Query: 368 DVNVISWNRTEPLIVSGGDD---GCIHVWDLRRFKKGSSVATFKH-------------HT 411
+ + ++ L+ D GCI +++ + G + + H+
Sbjct: 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYET---EFGERIGSLSVPTHSSQASLGEFAHS 291
Query: 412 APVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ V ++ ++ + T S G D ++ WD+
Sbjct: 292 SWVMSLSFNDS-GETLCSAGWDGKLRFWDVK 321
Score = 63.2 bits (154), Expect = 1e-10
Identities = 44/287 (15%), Positives = 85/287 (29%), Gaps = 84/287 (29%)
Query: 169 LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW---TPREAGAWQVDQKPLGGHTNS 225
+ S ++D S G++ATG + I T R ++ + ++NS
Sbjct: 179 VESPMTPSQFATSVDISER--GLIATGFNNGTVQISELSTLRPLYNFESQH-SMINNSNS 235
Query: 226 AEDLQWS-DLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTE 284
+++S LA H S++
Sbjct: 236 IRSVKFSPQGSL----------LA--------------------IAH--------DSNSF 257
Query: 285 PGV----LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCS 339
+ G+ ++ + T H++ V L ++ G L S
Sbjct: 258 GCITLYETEFGERIGSLSVPTHSSQ-----ASLGEFAHSSWVMSLSFNDSG--ETLCSAG 310
Query: 340 VDLSIRIWDTRVINTKSCMLTLPNAHTSDV----NVISWNRTEPLIVSGGDDGCIHVWDL 395
D +R WD + TK + TL N H D+ ++++ + + G +D+
Sbjct: 311 WDGKLRFWDVK---TKERITTL-NMHCDDIEIEEDILAVDEHGDSLAEPGV------FDV 360
Query: 396 RRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ KKG + + D I + A
Sbjct: 361 KFLKKGWRSGMGADL-------------NESLCCVCLDRSIRWFREA 394
Score = 60.9 bits (148), Expect = 7e-10
Identities = 15/152 (9%), Positives = 33/152 (21%), Gaps = 35/152 (23%)
Query: 317 GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI---- 372
H + + SCS D +++WD + +++ V+
Sbjct: 14 AHDADIFSVSACN---SFTVSCSGDGYLKVWDNK---LLDNENPKDKSYSHFVHKSGLHH 67
Query: 373 --------------------SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTA 412
S++ +D V + + K H+
Sbjct: 68 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL---DLLDSDMKKHSF 124
Query: 413 PVTTVEWHP--TESSTFASGGADDQIALWDLA 442
S + +W
Sbjct: 125 WALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156
Score = 57.8 bits (140), Expect = 6e-09
Identities = 14/134 (10%), Positives = 34/134 (25%), Gaps = 30/134 (22%)
Query: 330 GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEP------LIVS 383
G+ D + ++ + + W +V+
Sbjct: 91 GDLLFYRITREDETKKVIFE---KLDLLDSDM---KKHSFWALKWGA-SNDRLLSHRLVA 143
Query: 384 GGDDGCIHVWDLRRFKKGSSVATFKH---------------HTAPVTTVEWHPTESSTFA 428
G ++W F S+ T + T+V+ A
Sbjct: 144 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIA 201
Query: 429 SGGADDQIALWDLA 442
+G + + + +L+
Sbjct: 202 TGFNNGTVQISELS 215
Score = 40.9 bits (96), Expect = 0.001
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 702 GVLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDR 758
G++ATG + I T R ++ ++ ++NS+ +++SP LA
Sbjct: 198 GLIATGFNNGTVQISELSTLRPLYNFESQH-SMINNSNSIRSVKFSPQGSL-LAIAHDSN 255
Query: 759 S 759
S
Sbjct: 256 S 256
Score = 36.6 bits (85), Expect = 0.025
Identities = 27/181 (14%), Positives = 47/181 (25%), Gaps = 40/181 (22%)
Query: 611 GKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPG 670
G IW + L + + G + S ++D S G
Sbjct: 148 GTTYIWKFHPFADESNS---LTLNWSPTLELQG----TVESPMTPSQFATSVDISER--G 198
Query: 671 VLATGDCKRNIHIW---TPREAGAWSVY--LYTNRFGV-----------LATG---DCKR 711
++ATG + I T R + + N + LA +
Sbjct: 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 258
Query: 712 NIHIW---------TPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNR 761
I ++ + H++ V L ++ G L S D R
Sbjct: 259 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG--ETLCSAGWDGKLR 316
Query: 762 I 762
Sbjct: 317 F 317
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 90.4 bits (225), Expect = 1e-19
Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
L GH + ++++ E +L SCS D S +W + + TL + HT + I
Sbjct: 26 IKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSL---NGERLGTL-DGHTGTIWSI 80
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASG-- 430
+ V+G D I +WD+ G VAT+K PV VE+ P + F +
Sbjct: 81 DVDCFTKYCVTGSADYSIKLWDV---SNGQCVATWKSPV-PVKRVEFSP-CGNYFLAILD 135
Query: 431 ---GADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHP 480
I +++ +ERDS + ++ P + H G W
Sbjct: 136 NVMKNPGSINIYE--IERDSATHELTKVSEE-PIHKIITHEGLDAATVAGWST 185
Score = 89.2 bits (222), Expect = 4e-19
Identities = 29/172 (16%), Positives = 49/172 (28%), Gaps = 33/172 (19%)
Query: 288 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSI 344
+ G I + E + H S+ D+Q+SP + S D +
Sbjct: 190 IIAGHKDGKISKYDVSNNYEYV------DSIDLHEKSISDMQFSPDLTY-FITSSRDTNS 242
Query: 345 RIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGG--------------DDGCI 390
+ D T + +N + I+ GG
Sbjct: 243 FLVDVS---TLQVLKKY--ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEA 297
Query: 391 HVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ + + H P+ TV P +++ASGG D I L
Sbjct: 298 RFYHK---IFEEEIGRVQGHFGPLNTVAISPQ-GTSYASGGEDGFIRLHHFE 345
Score = 75.7 bits (187), Expect = 1e-14
Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 25/147 (17%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDL-----SIRIWDTRVINTKSCMLTLP----- 362
V+ +++SP + ++ SI I++ I S L
Sbjct: 110 ATWKSPV-PVKRVEFSPCGNY-FLAILDNVMKNPGSINIYE---IERDSATHELTKVSEE 164
Query: 363 -------NAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVT 415
+ V W+ I++G DG I +D+ V + H ++
Sbjct: 165 PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS--NNYEYVDSIDLHEKSIS 222
Query: 416 TVEWHPTESSTFASGGADDQIALWDLA 442
+++ P + + F + D L D++
Sbjct: 223 DMQFSP-DLTYFITSSRDTNSFLVDVS 248
Score = 75.3 bits (186), Expect = 1e-14
Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 32/157 (20%)
Query: 308 WQVD----QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPN 363
W L GHT ++ + K + S D SI++WD + C+ T
Sbjct: 59 WYSLNGERLGTLDGHTGTIWSIDVDCFTKY-CVTGSADYSIKLWDV---SNGQCVATWK- 113
Query: 364 AHTSDVNVISWNRTEPLIVSGGDD-----GCIHVWDLRRFKKGSSVATFKHHTA------ 412
V + ++ ++ D+ G I+++++ R S+ +
Sbjct: 114 -SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER---DSATHELTKVSEEPIHKI 169
Query: 413 -------PVTTVEWHPTESSTFASGGADDQIALWDLA 442
T W +G D +I+ +D++
Sbjct: 170 ITHEGLDAATVAGWSTK-GKYIIAGHKDGKISKYDVS 205
Score = 72.6 bits (179), Expect = 1e-13
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 335 LASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWD 394
++ + + L H + + +N+ L+ S D VW
Sbjct: 5 HHHHHHSSGENLYFQ---GSHMKAIKL-TGHERPLTQVKYNKEGDLLFSCSKDSSASVWY 60
Query: 395 LRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
G + T HT + +++ + +G AD I LWD++
Sbjct: 61 S---LNGERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSIKLWDVS 104
Score = 55.3 bits (134), Expect = 3e-08
Identities = 20/151 (13%), Positives = 44/151 (29%), Gaps = 27/151 (17%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRV------------- 334
T N + + QV K + +P ++ +
Sbjct: 233 FITSSRDTNSFLV---DVSTLQV-LKKYETDC-PLNTAVITPLKEFIILGGGQEAKDVTT 287
Query: 335 LASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWD 394
++ R + + + + H +N ++ + SGG+DG I +
Sbjct: 288 TSANEGKFEARFYH---KIFEEEIGRV-QGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343
Query: 395 LRRFKKGSSVATFKHHTAPVTTVEWHPTESS 425
F+K + A + H E++
Sbjct: 344 ---FEKSYFDFKYDVEKAA--EAKEHMQEAN 369
Score = 37.2 bits (87), Expect = 0.020
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 10/62 (16%)
Query: 704 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSN 760
+ G I + E + H S+ D+Q+SP + S D ++
Sbjct: 190 IIAGHKDGKISKYDVSNNYEYV------DSIDLHEKSISDMQFSPDLTY-FITSSRDTNS 242
Query: 761 RI 762
+
Sbjct: 243 FL 244
Score = 31.8 bits (73), Expect = 0.81
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L GH + ++++ E +L SCS D S +
Sbjct: 26 IKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASV 58
Score = 31.8 bits (73), Expect = 0.93
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 11/63 (17%)
Query: 703 VLATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRS 759
+ + K + E G + GH + + SP AS D
Sbjct: 287 TTSANEGKFEARFYHKIFEEEIG-------RVQGHFGPLNTVAISPQGTS-YASGGEDGF 338
Query: 760 NRI 762
R+
Sbjct: 339 IRL 341
Score = 29.9 bits (68), Expect = 3.9
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 724 WQVD----QKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
W L GHT ++ + K + S D S ++
Sbjct: 59 WYSLNGERLGTLDGHTGTIWSIDVDCFTKY-CVTGSADYSIKL 100
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 90.5 bits (225), Expect = 6e-19
Identities = 36/185 (19%), Positives = 57/185 (30%), Gaps = 12/185 (6%)
Query: 259 GIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGH 318
G P + S ++ A V + + H
Sbjct: 327 GEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAA-----AGLVLKGTMRAH 381
Query: 319 TNSVEDLQWSPGEKRVLASCSVDLSIRIWD--TRVINTKSCMLTLPNAHTSDVNVISWNR 376
T+ V + ++ S S D SI +W L H+ V + +
Sbjct: 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSS 440
Query: 377 TEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQI 436
+SG DG + +WDL G S F HT V +V + ++ S D I
Sbjct: 441 DGQFALSGSWDGELRLWDL---AAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTI 496
Query: 437 ALWDL 441
LW+
Sbjct: 497 KLWNT 501
Score = 89.7 bits (223), Expect = 1e-18
Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 31/158 (19%)
Query: 289 ATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRIW 347
G+CK I + GH + V +++SP + + S S D ++++W
Sbjct: 501 TLGECKYTI--------------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW 546
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEP---LIVSGGDDGCIHVWDLRRFKKGSSV 404
+ ++ TL HT V+ ++ + P L SGG DG + +WDL +G +
Sbjct: 547 N---LSNCKLRSTL-AGHTGYVSTVAVS---PDGSLCASGGKDGVVLLWDL---AEGKKL 596
Query: 405 ATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ + ++ + + + P + + I +WDL
Sbjct: 597 YSLEANS-VIHALCFSP-NRYWLCAAT-EHGIKIWDLE 631
Score = 74.0 bits (182), Expect = 1e-13
Identities = 34/150 (22%), Positives = 54/150 (36%), Gaps = 30/150 (20%)
Query: 312 QKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVN 370
+ L GHT V + SP G + AS D + +WD + + +L A++ ++
Sbjct: 554 RSTLAGHTGYVSTVAVSPDG--SLCASGGKDGVVLLWD---LAEGKKLYSL-EANSV-IH 606
Query: 371 --VISWNRTEPLIVSGGDDGCIHVWDL----------------RRFKKGSSVATFKHHTA 412
S NR + + I +WDL S A K
Sbjct: 607 ALCFSPNRY---WLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVI 663
Query: 413 PVTTVEWHPTESSTFASGGADDQIALWDLA 442
T++ W + ST SG D I +W +
Sbjct: 664 YCTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692
Score = 58.2 bits (141), Expect = 8e-09
Identities = 27/134 (20%), Positives = 40/134 (29%), Gaps = 9/134 (6%)
Query: 312 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNV 371
+ +V + R + AHT V
Sbjct: 333 IPQMSAFWYAVRTAVINAASGRQTVDA-----ALAAAQTNAAAGLVLKGTMRAHTDMVTA 387
Query: 372 ISWNRTEP-LIVSGGDDGCIHVWDLRRFKK--GSSVATFKHHTAPVTTVEWHPTESSTFA 428
I+ +IVS D I +W L + K G + H+ V V +
Sbjct: 388 IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFAL 446
Query: 429 SGGADDQIALWDLA 442
SG D ++ LWDLA
Sbjct: 447 SGSWDGELRLWDLA 460
Score = 47.8 bits (114), Expect = 1e-05
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 24/104 (23%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTL----------- 361
L ++ + L +SP L + + + I+IWD + +KS + L
Sbjct: 597 YSLEANS-VIHALCFSPNRYW-LCAAT-EHGIKIWD---LESKSIVEDLKVDLKAEAEKA 650
Query: 362 -------PNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRF 398
++W+ + SG DG I VW + R+
Sbjct: 651 DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 694
Score = 39.7 bits (93), Expect = 0.004
Identities = 12/63 (19%), Positives = 16/63 (25%), Gaps = 4/63 (6%)
Query: 288 LATGDCKRNI-HIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDLSIR 345
L + ++ A L WS G L S D IR
Sbjct: 630 LESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG--STLFSGYTDGVIR 687
Query: 346 IWD 348
+W
Sbjct: 688 VWG 690
Score = 38.5 bits (90), Expect = 0.009
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 673 ATGDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLV 732
G+ NI + A+ + T + A A V + +
Sbjct: 325 QKGEIMPNI-----PQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMR 379
Query: 733 GHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
HT+ V + ++ S S D+S +
Sbjct: 380 AHTDMVTAIATPIDNADIIVSASRDKSIIL 409
Score = 36.6 bits (85), Expect = 0.034
Identities = 20/133 (15%), Positives = 39/133 (29%), Gaps = 16/133 (12%)
Query: 643 GIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWSVYLYTNRFG 702
G P + S ++ + +
Sbjct: 327 GEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAAL--AAAQTNAAAGLVLKGTMRAHTDM 384
Query: 703 V------------LATGDCKRNIHIW-TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKR 749
V + + ++I +W ++ A+ V Q+ L GH++ VED+ S +
Sbjct: 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF 444
Query: 750 VLASCSVDRSNRI 762
S S D R+
Sbjct: 445 -ALSGSWDGELRL 456
Score = 36.6 bits (85), Expect = 0.037
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 15/59 (25%)
Query: 705 ATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
G+CK I + GH + V +++SP + + S S D++ ++
Sbjct: 501 TLGECKYTI--------------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Score = 31.2 bits (71), Expect = 1.6
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ VGHT V + +S + R + S S DR+ ++
Sbjct: 466 RRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKL 498
Score = 29.3 bits (66), Expect = 5.7
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 728 QKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
+ L GHT V + SP G + AS D +
Sbjct: 554 RSTLAGHTGYVSTVAVSPDG--SLCASGGKDGVVLL 587
Score = 29.3 bits (66), Expect = 6.3
Identities = 10/61 (16%), Positives = 14/61 (22%), Gaps = 4/61 (6%)
Query: 704 LATGDCKRNI-HIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNR 761
L + ++ A L WS G L S D R
Sbjct: 630 LESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG--STLFSGYTDGVIR 687
Query: 762 I 762
+
Sbjct: 688 V 688
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 87.8 bits (218), Expect = 2e-18
Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 18/136 (13%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
+ L GH + LQ+ R++ S S D +IR+WD I +C+ L H V I
Sbjct: 290 RTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWD---IECGACLRVL-EGHEELVRCI 342
Query: 373 SWNRTEPLIVSGGDDGCIHVWDL------RRFKKGSSVATFKHHTAPVTTVEWHPTESST 426
++ IVSG DG I VWDL R + T H+ V +++
Sbjct: 343 RFDNK--RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQ 397
Query: 427 FASGGADDQIALWDLA 442
S DD I +WD
Sbjct: 398 IVSSSHDDTILIWDFL 413
Score = 87.8 bits (218), Expect = 2e-18
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 16/155 (10%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
+ +G I IW + + L GHT SV LQ+ RV+ + S D ++R+W
Sbjct: 146 IVSGLRDNTIKIWDK-NTLECK---RILTGHTGSVLCLQYDE---RVIITGSSDSTVRVW 198
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATF 407
D +NT + TL H V + +N ++V+ D I VWD+ +
Sbjct: 199 D---VNTGEMLNTL-IHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVL 252
Query: 408 KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
H A V V++ S D I +W+ +
Sbjct: 253 VGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTS 284
Score = 82.4 bits (204), Expect = 1e-16
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
L+ H +V L+++ ++ +CS D SI +WD + L H + VNV+
Sbjct: 207 NTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVL-VGHRAAVNVV 262
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
++ IVS D I VW+ V T H + +++ SG +
Sbjct: 263 DFDDK--YIVSASGDRTIKVWNT---STCEFVRTLNGHKRGIACLQYRDR---LVVSGSS 314
Query: 433 DDQIALWDLA 442
D+ I LWD+
Sbjct: 315 DNTIRLWDIE 324
Score = 73.5 bits (181), Expect = 7e-14
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Query: 312 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT------RVINTKSCMLTLPNAH 365
+ L GH V +++ + + S + D I++WD R C+ TL H
Sbjct: 329 LRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEH 384
Query: 366 TSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTV 417
+ V + ++ IVS D I +WD F + + T
Sbjct: 385 SGRVFRLQFDEF--QIVSSSHDDTILIWD---FLNDPAAQAEPPRSPSRTYT 431
Score = 51.6 bits (124), Expect = 6e-07
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Query: 365 HTSDVNVI-SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTE 423
+ + + IVSG D I +WD HT V +++
Sbjct: 129 RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDK---NTLECKRILTGHTGSVLCLQYDER- 184
Query: 424 SSTFASGGADDQIALWDLA 442
+G +D + +WD+
Sbjct: 185 --VIITGSSDSTVRVWDVN 201
Score = 30.0 bits (68), Expect = 3.0
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ T R+I +W + ++ LVGH +V + + + + S S DR+ ++
Sbjct: 226 MVTCSKDRSIAVWD-MASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKV 280
Score = 30.0 bits (68), Expect = 3.5
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ +G I IW + + L GHT SV LQ+ RV+ + S D + R+
Sbjct: 146 IVSGLRDNTIKIWDK-NTLECK---RILTGHTGSVLCLQYDE---RVIITGSSDSTVRV 197
Score = 29.6 bits (67), Expect = 4.0
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 18/98 (18%)
Query: 672 LATGDCKRNI--HIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIW-----TPREAGAW 724
+ G C R + H E + R + +G I +W A A
Sbjct: 323 IECGACLRVLEGH-----EELVRCIRFDNKR---IVSGAYDGKIKVWDLVAALDPRAPAG 374
Query: 725 QVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ + LV H+ V LQ+ + S S D + I
Sbjct: 375 TLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILI 409
Score = 29.6 bits (67), Expect = 4.7
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L+ H +V L+++ ++ +CS DRS +
Sbjct: 207 NTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAV 237
Score = 28.4 bits (64), Expect = 9.8
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ L GH + LQ+ R++ S S D + R+
Sbjct: 290 RTLNGHKRGIACLQYRD---RLVVSGSSDNTIRL 320
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 84.2 bits (209), Expect = 4e-17
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 313 KPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVI 372
L GHT+ + + KR S S+D +IRIWD + M TL HT+ V ++
Sbjct: 304 YILSGHTDRIYSTIYDHERKR-CISASMDTTIRIWD---LENGELMYTL-QGHTALVGLL 358
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGA 432
+ +VS DG I WD S HHT ++ + + SG
Sbjct: 359 RLSDK--FLVSAAADGSIRGWDA----NDYSRKFSYHHTNLSAITTFYVS-DNILVSGS- 410
Query: 433 DDQIALWDLA 442
++Q +++L
Sbjct: 411 ENQFNIYNLR 420
Score = 81.5 bits (202), Expect = 2e-16
Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 30/152 (19%)
Query: 313 KPLVGHTNSVEDLQ--WSPGEKRVLASCSVDLSIRIWDTR-------------------- 350
GH ++V L K + + S D ++ +W
Sbjct: 197 HVFEGHNSTVRCLDIVEYKNIKY-IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255
Query: 351 VINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHH 410
+ L H + V +S + ++VSG D + VWD+ + + H
Sbjct: 256 PEENPYFVGVL-RGHMASVRTVSGHGN--IVVSGSYDNTLIVWDV---AQMKCLYILSGH 309
Query: 411 TAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
T + + + E S D I +WDL
Sbjct: 310 TDRIYSTIYDH-ERKRCISASMDTTIRIWDLE 340
Score = 78.1 bits (193), Expect = 3e-15
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 308 WQVD----QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPN 363
W ++ L GHT V L+ S + L S + D SIR WD N S +
Sbjct: 337 WDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDA---NDYSRKFSY-- 388
Query: 364 AHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSV-ATFKHHTAPVTTVEWHPT 422
HT+ + ++ ++ ++VSG ++ ++++L + G V A + +V +
Sbjct: 389 HHTNLSAITTFYVSDNILVSGSEN-QFNIYNL---RSGKLVHANILKDADQIWSVNFKGK 444
Query: 423 ESSTFASGGADDQIALWDL 441
T + D + ++
Sbjct: 445 ---TLVAAVEKDGQSFLEI 460
Score = 77.7 bits (192), Expect = 4e-15
Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 12/141 (8%)
Query: 303 REAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP 362
E L + R L+ ++ W TL
Sbjct: 62 SENFVSPKGFNSLNLKLSQKYPKLSQQDRLR-LSFLENIFILKNWYN--PKFVPQRTTLR 118
Query: 363 NAHTSDVN-VISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHP 421
H + V + + +++G DD I V+D + H V +++
Sbjct: 119 -GHMTSVITCLQFEDN--YVITGADDKMIRVYDS---INKKFLLQLSGHDGGVWALKYAH 172
Query: 422 TESSTFASGGADDQIALWDLA 442
SG D + +WD+
Sbjct: 173 --GGILVSGSTDRTVRVWDIK 191
Score = 38.8 bits (91), Expect = 0.006
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ TG + I ++ ++ + L GH V L+++ G +L S S DR+ R+
Sbjct: 135 VITGADDKMIRVY---DSINKKF-LLQLSGHDGGVWALKYAHG--GILVSGSTDRTVRV 187
Score = 32.6 bits (75), Expect = 0.47
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L GHT+ + + KR S S+D + RI
Sbjct: 304 YILSGHTDRIYSTIYDHERKR-CISASMDTTIRI 336
Score = 32.6 bits (75), Expect = 0.59
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 729 KPLVGHTNSVEDLQ--WSPGEKRVLASCSVDRSNRI 762
GH ++V L K + + S D + +
Sbjct: 197 HVFEGHNSTVRCLDIVEYKNIKY-IVTGSRDNTLHV 231
Score = 32.6 bits (75), Expect = 0.59
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 724 WQVD----QKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
W ++ L GHT V L+ S + L S + D S R
Sbjct: 337 WDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRG 376
Score = 32.2 bits (74), Expect = 0.74
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L+ + + W + + L GH SV + + + D+ R+
Sbjct: 93 LSFLENIFILKNW---YNPKFVPQRTTLRGHMTSVITCLQFEDNY--VITGADDKMIRV 146
Score = 28.8 bits (65), Expect = 8.1
Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 8/64 (12%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQK-----PLVGHTNSVEDLQWSPGEKRVLASCSVDR 758
L + ++ L GH SV + S + S S D
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNI-VVSGSYDN 290
Query: 759 SNRI 762
+ +
Sbjct: 291 TLIV 294
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 81.8 bits (202), Expect = 7e-17
Identities = 22/202 (10%), Positives = 59/202 (29%), Gaps = 6/202 (2%)
Query: 258 PGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVG 317
L + ++ + G + I + ++Q L
Sbjct: 42 IQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA----LTN 97
Query: 318 HTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVN--VISWN 375
+ ++ + L + S D I + D R + N++ + V + + +
Sbjct: 98 NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD 157
Query: 376 RTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQ 435
++ G ++ + + L + + + V P E +A D +
Sbjct: 158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217
Query: 436 IALWDLAVERDSEIEQREAELK 457
+A+ + D + +
Sbjct: 218 VAVEFFDDQGDDYNSSKRFAFR 239
Score = 77.2 bits (190), Expect = 2e-15
Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 8/173 (4%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
L ++ ++ + A VD + + + + + + +V I
Sbjct: 26 LLITSWDGSLTVYKF-DIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEP-LIVSGGDDGCIHVWDLR-RFKKGSSVA 405
D + L + +++ + + +++ DG I V D R +V
Sbjct: 85 D---LIGSPSFQAL-TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVK 140
Query: 406 TFKHHTAPVTTVEWHPTESST-FASGGADDQIALWDLAVERDSEIEQREAELK 457
+ V + +S+ G + Q+ + L + D E+ LK
Sbjct: 141 NLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193
Score = 71.4 bits (175), Expect = 2e-13
Identities = 27/178 (15%), Positives = 54/178 (30%), Gaps = 18/178 (10%)
Query: 280 WSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASC 338
L I + PR G + K L + V++ ++ L
Sbjct: 107 ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166
Query: 339 SVDLSIRIWDTRV--INTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVW--- 393
+ ++ + + + + + DV ++ + DG + V
Sbjct: 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE--GYACSSIDGRVAVEFFD 224
Query: 394 DLRRFKKGSSVATFKHH---------TAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
D S F+ H PV ++E+ P + G+D I+ W+L
Sbjct: 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR-HKFLYTAGSDGIISCWNLQ 281
Score = 67.2 bits (164), Expect = 5e-12
Identities = 39/295 (13%), Positives = 83/295 (28%), Gaps = 44/295 (14%)
Query: 162 PGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGG 221
L + ++ + G + I + ++Q L
Sbjct: 42 IQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA----LTN 97
Query: 222 HTNSAEDLQWSDLKTAL-------QTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTE 274
+ + + + ++ + + I L S + +
Sbjct: 98 NEANLGICRICKYGDDKLIAASWDGLI----EV--IDPRNYGDGVIAVKNLNSNNTKVKN 151
Query: 275 G-FAMDWSSTEPGVLATGDCKRNIHIWTPR--EAGAWQVDQKPLVGHTNSVEDLQWSPGE 331
F MD +S+ L G + + E +++ L V P E
Sbjct: 152 KIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV---ALLPKE 205
Query: 332 KRVLASCSVD--LSIRIWDTRVINTKSCMLTLPNAH---------TSDVNVISWNRTEPL 380
+ A S+D +++ +D + + S H VN I ++
Sbjct: 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF 265
Query: 381 IVSGGDDGCIHVWDLRRFKKGSSVATF-KHHTAPVTTVEWHPTESSTFASGGADD 434
+ + G DG I W+L + + F K + V + + +DD
Sbjct: 266 LYTAGSDGIISCWNL---QTRKKIKNFAKFNEDSVVKIACSD---NILCLATSDD 314
Score = 62.6 bits (152), Expect = 2e-10
Identities = 12/84 (14%), Positives = 27/84 (32%)
Query: 359 LTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVE 418
+ + A ++ I ++ L++ DG + V+ K + + P+
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 419 WHPTESSTFASGGADDQIALWDLA 442
+ G +I DL
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLI 87
Score = 37.5 bits (87), Expect = 0.016
Identities = 19/164 (11%), Positives = 38/164 (23%), Gaps = 34/164 (20%)
Query: 611 GKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPG 670
G + ++ + VD Q + PL ++
Sbjct: 33 GSLTVYKFDIQAKNVD-LLQSLRYKH-----------PLLC----------CNFIDNTDL 70
Query: 671 VLATGDCKRNIHIWTPR-----------EAGAWSVYLYTNRFGVLATGDCKRNIHIWTPR 719
+ G + I EA + L I + PR
Sbjct: 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130
Query: 720 EAGAWQVDQKPLVGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
G + K L + V++ ++ L + +
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQW 174
Score = 31.4 bits (71), Expect = 1.2
Identities = 5/59 (8%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
L ++ ++ + A VD + + + + + + +V
Sbjct: 26 LLITSWDGSLTVYKF-DIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 84.2 bits (207), Expect = 1e-16
Identities = 33/246 (13%), Positives = 87/246 (35%), Gaps = 33/246 (13%)
Query: 263 PPLFSFSGHLTEGF-----AMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVG 317
+FS + G A + T+ +LA +HI+ G QV+ +
Sbjct: 3 NKIFSLAETNKYGMSSKPIAAAFDFTQ-NLLAIATVTGEVHIY-----GQQQVEVVIKLE 56
Query: 318 HTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRT 377
++++++++ G L + ++ + + ++ + T+ + I + +
Sbjct: 57 DRSAIKEMRFVKGIY--LVVINAKDTVYVLS---LYSQKVLTTV--FVPGKITSIDTDAS 109
Query: 378 EPLIVSGGDDGCIHVWDLRRFKKG--------SSVATFKHHTAPVTTVEWHPTESSTFAS 429
++ G +G + V+D+ R + S +P+ +++W+P + T
Sbjct: 110 LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI 169
Query: 430 GGADDQIALWDLA---VERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGTI 486
+ + L +++ E S+ ++ + +HP
Sbjct: 170 SY-EYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR-TPKVIQSLYHPN--SLH 225
Query: 487 ISTANS 492
I T +
Sbjct: 226 IITIHE 231
Score = 72.6 bits (177), Expect = 3e-13
Identities = 23/179 (12%), Positives = 47/179 (26%), Gaps = 29/179 (16%)
Query: 286 GVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIR 345
L + K +++ + V + + + + S+
Sbjct: 70 IYLVVINAKDTVYVLSLY-----SQKVLTTVFVPGKITSIDTDASLDW-MLIGLQNGSMI 123
Query: 346 IWDTR-------VINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRF 398
++D ++ P A S + I WN + V + + L
Sbjct: 124 VYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVEN 183
Query: 399 K---------------KGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ S T + T V +HP S + D+ + WD
Sbjct: 184 EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDAN 241
Score = 53.7 bits (128), Expect = 2e-07
Identities = 28/266 (10%), Positives = 73/266 (27%), Gaps = 49/266 (18%)
Query: 365 HTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKH-HTAPVTTVEWHPTE 423
+S +++ T+ L+ G +H++ ++ + K + + + +
Sbjct: 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE-----VVIKLEDRSAIKEMRFVK-- 68
Query: 424 SSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLP 483
A D + + L + ++L +I + L
Sbjct: 69 GIYLVVINAKDTVYVLSLYSQ-----------------KVLTTVFVPGKITSIDTDASLD 111
Query: 484 GTIISTAN---------SGFNIFRTISDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTA 534
+I N + +L F I + W+P+ GT++ +
Sbjct: 112 WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171
Query: 535 NSGFNIFRTISMSNLTSTEEDNERELEDDESEGSGDEDRRKDPVMNSYFIRHRGCINRVR 594
+ ++ + + + ++R V+ S + + I
Sbjct: 172 EYVTLTY-SLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHII--- 227
Query: 595 TCQYGSTTLAGVWGEVGKVGIWDLKT 620
E + WD +
Sbjct: 228 -----------TIHEDNSLVFWDANS 242
Score = 51.0 bits (121), Expect = 2e-06
Identities = 23/181 (12%), Positives = 47/181 (25%), Gaps = 13/181 (7%)
Query: 314 PLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVIS 373
+ ++L W + SV + + K +L
Sbjct: 386 FTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLK---GGVRTKRQKL 442
Query: 374 WNRTEPLIVSGGDDGCIHVWDLRR--------FKKGSSVATFKHHTAPVTTVEWHPTESS 425
++G +G + ++D F+ S K V + + E+
Sbjct: 443 PAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETL 501
Query: 426 TFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGT 485
A + L+ V + +E E DL L + + P
Sbjct: 502 ELAVSIETGDVVLFKYEVNQFYSVEN-RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG 560
Query: 486 I 486
+
Sbjct: 561 V 561
Score = 30.2 bits (67), Expect = 3.6
Identities = 35/269 (13%), Positives = 70/269 (26%), Gaps = 32/269 (11%)
Query: 162 PGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNI--HIWTPREAGAWQVDQKPL 219
GI T F +L+ W + + + + L
Sbjct: 383 SGIFTDKASLFPQNLS------WLRPLATTSMAASVPNKLWLGALSAAQNKDY-----LL 431
Query: 220 GGHTNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMD 279
G + ++ TA T + ++ G I F + T A +
Sbjct: 432 KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGD---IQDNASFEVNLSRTLNKAKE 488
Query: 280 WS------STEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKR 333
+ + E LA ++ ++ + V+ +P G
Sbjct: 489 LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNG 548
Query: 334 VLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVW 393
VL + + S + TS +N + + G + +
Sbjct: 549 VLVDVRDRAPTGVRQGFMP---STAVHANKGKTSAINNSNIG----FVGIAYAAGSLMLI 601
Query: 394 DLRR---FKKGSSVATFKHHTAPVTTVEW 419
D R + +A VT +E+
Sbjct: 602 DRRGPAIIYMENIREISGAQSACVTCIEF 630
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 81.3 bits (200), Expect = 2e-16
Identities = 60/352 (17%), Positives = 103/352 (29%), Gaps = 62/352 (17%)
Query: 192 LATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQLAEHN 251
LATGD + I+ Q + + H S + + + D + E
Sbjct: 43 LATGDKGGRVVIF-------QQEQENKIQSH--SRGEYNVYSTFQSHEPEFDYLKSLEIE 93
Query: 252 KKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPG-VLATGDCKRNIHIWTPREAGAWQV 310
+K + W + + I +W E +
Sbjct: 94 EK---------------------INKIRWLPQKNAAQFLLSTNDKTIKLWKISE-RDKRP 131
Query: 311 DQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVN 370
+ L D RV +DL + R NAHT +N
Sbjct: 132 EGYNLKEEDGRYRDPTTVTT-LRVPVFRPMDLMVEASPRR---------IFANAHTYHIN 181
Query: 371 VISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSV-----ATFKHHTAPVTTVEWHPTESS 425
IS N +S DD I++W L + ++ A + T +T E+HP +
Sbjct: 182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240
Query: 426 TFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGT 485
TF + I L D+ R + L D S+L +
Sbjct: 241 TFVYSSSKGTIRLCDM----------RASALCDRHSKLFEEPEDPSNRSFFSEI---ISS 287
Query: 486 IISTANSG-FNIFRTISDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANS 536
I S T L ++ +++ + ++ H L + S +
Sbjct: 288 ISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339
Score = 64.4 bits (156), Expect = 7e-11
Identities = 34/298 (11%), Positives = 79/298 (26%), Gaps = 51/298 (17%)
Query: 181 AMDWSSTEPG-VLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQ 239
+ W + + I +W E + + L D
Sbjct: 98 KIRWLPQKNAAQFLLSTNDKTIKLWKISE-RDKRPEGYNLKEEDGRYRDPTTVTTLRVPV 156
Query: 240 TVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHI 299
+ ++ H ++ +S L+ D I++
Sbjct: 157 FRPMDLMVEASPRRIFAN------------AHTYHINSISINSDYETYLSADD--LRINL 202
Query: 300 WTPREAG----AWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTR----- 350
W + + T + ++ P S +IR+ D R
Sbjct: 203 WHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262
Query: 351 -------VINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSS 403
+ + S ++ + ++ + +++ D + VWDL +
Sbjct: 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR-DYLSVKVWDLNMENR--P 319
Query: 404 VATFKHHTAPVT---------------TVEWHPTESSTFASGGADDQIALWDLAVERD 446
V T++ H + W+ S +G ++ ++D +RD
Sbjct: 320 VETYQVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRD 376
Score = 59.4 bits (143), Expect = 2e-09
Identities = 22/210 (10%), Positives = 54/210 (25%), Gaps = 33/210 (15%)
Query: 252 KKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQ-- 309
+ + I + A ++ K I + R +
Sbjct: 206 EITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265
Query: 310 ----------VDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCML 359
++ +S+ D+++S R + + LS+++WD +
Sbjct: 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRD-YLSVKVWDLN--MENRPVE 321
Query: 360 TLP--------------NAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVA 405
T N D WN ++ ++++G + ++D +
Sbjct: 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN---TKRDIT 378
Query: 406 TFKHHTAPVTTVEWHPTESSTFASGGADDQ 435
P + D+
Sbjct: 379 LEASRENNKPRTVLKPRKVCASGKRKKDEI 408
Score = 42.4 bits (99), Expect = 4e-04
Identities = 42/380 (11%), Positives = 103/380 (27%), Gaps = 83/380 (21%)
Query: 382 VSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
++G G W + KG+ ++TVE++ + A+G ++ ++
Sbjct: 1 MAGAGGGNDIQWCFSQ-VKGAVDDDVAE-ADIISTVEFNHS-GELLATGDKGGRVVIFQQ 57
Query: 442 AVERDSEIEQR-------EAELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGF 494
E + R + + L +++I ++ W PQ + +
Sbjct: 58 EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTND- 116
Query: 495 NIFRTISDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIFRTISMSNLTSTEE 554
+TI + + K + + R + E
Sbjct: 117 ---KTI--------KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE 165
Query: 555 DNERELEDDESEGSGDEDRRKDPVMNSYFIRHRGCINRVRTCQYGSTTLAGVWGEVGKVG 614
+ R + + H IN + T L+ + ++
Sbjct: 166 ASPRRI---------------------FANAHTYHINSISINSDYETYLSA---DDLRIN 201
Query: 615 IWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLAT 674
+W L+ ++ + I + A ++
Sbjct: 202 LWHLEITDRSFN-----------------IVDIKPANMEELTEVITAAEFHPNSCNTFVY 244
Query: 675 GDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGH 734
K I + R A+ C R+ ++ E ++
Sbjct: 245 SSSKGTIRLCDMR-----------------ASALCDRHSKLFEEPEDP---SNRSFFSEI 284
Query: 735 TNSVEDLQWSPGEKRVLASC 754
+S+ D+++S + ++
Sbjct: 285 ISSISDVKFSHSGRYMMTRD 304
Score = 42.1 bits (98), Expect = 7e-04
Identities = 30/279 (10%), Positives = 67/279 (24%), Gaps = 48/279 (17%)
Query: 156 KKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVD 215
+ + I + A ++ K I + R +
Sbjct: 206 EITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265
Query: 216 QKPLGGHTNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSG-HLTE 274
K + + +S++ +++ V FS SG ++
Sbjct: 266 SKLFEEPEDPSNRSFFSEIISSISDVK-----------------------FSHSGRYMMT 302
Query: 275 GFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRV 334
S + + + + + + W+ + V
Sbjct: 303 R--DYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFEC---CWNGSDSVV 357
Query: 335 LASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWD 394
+ S + R++D +TL + ++ + I V
Sbjct: 358 -MTGSYNNFFRMFDRN----TKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDS 412
Query: 395 LRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGAD 433
L KK + WHP E+ A +
Sbjct: 413 LDFNKK-------------ILHTAWHPKENI-IAVATTN 437
Score = 37.8 bits (87), Expect = 0.014
Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 27/127 (21%)
Query: 336 ASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDL 395
A D+ + A ++ + +N + L+ +G G + ++
Sbjct: 4 AGGGNDIQWCFSQVKGAVDDDV------AEADIISTVEFNHSGELLATGDKGGRVVIFQQ 57
Query: 396 RRFKKGSS--------VATFKHHTA------------PVTTVEWHPTES-STFASGGADD 434
+ K S +TF+ H + + W P ++ + F D
Sbjct: 58 EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDK 117
Query: 435 QIALWDL 441
I LW +
Sbjct: 118 TIKLWKI 124
Score = 28.6 bits (63), Expect = 9.3
Identities = 10/92 (10%), Positives = 30/92 (32%), Gaps = 14/92 (15%)
Query: 672 LATGDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPL 731
LATGD + I+ + + ++++ ++ + D
Sbjct: 43 LATGDKGGRVVIFQQEQ-------------ENKIQSHSRGEYNVYSTFQSHEPEFDYLKS 89
Query: 732 VGHTNSVEDLQWSP-GEKRVLASCSVDRSNRI 762
+ + ++W P + D++ ++
Sbjct: 90 LEIEEKINKIRWLPQKNAAQFLLSTNDKTIKL 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 78.3 bits (192), Expect = 1e-15
Identities = 17/169 (10%), Positives = 47/169 (27%), Gaps = 16/169 (9%)
Query: 281 SSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLV-----GHTNSVEDLQWSP-GEKRV 334
P +++ G C R + ++ + ++ N + +
Sbjct: 82 GGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEY 141
Query: 335 LASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWD 394
+I S + + + ++ L+ DG + V++
Sbjct: 142 FIWADNRGTIGFQS---YEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198
Query: 395 LRRFKKGSSVATF--KHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
L ++ A + V++ + + D + +DL
Sbjct: 199 LS---SPDQASSRFPVDEEAKIKEVKFAD--NGYWMVVECDQTVVCFDL 242
Score = 70.6 bits (172), Expect = 4e-13
Identities = 19/176 (10%), Positives = 50/176 (28%), Gaps = 12/176 (6%)
Query: 269 SGHLTEGFAMDWSSTEPGV-LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQW 327
E M + D + I + + + V +S
Sbjct: 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSG---VL 178
Query: 328 SPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTL-PNAHTSDVNVISWNRTEPLIVSGGD 386
+ +LA S D + +++ + + P + + + + +V D
Sbjct: 179 HK-DSLLLALYSPDGILDVYNLS---SPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD 234
Query: 387 DGCIHVWDLRRFKKGSSVATFK--HHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
+ +DLR+ + T+ T + + + A + + ++
Sbjct: 235 Q-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYK 289
Score = 60.2 bits (145), Expect = 1e-09
Identities = 28/252 (11%), Positives = 68/252 (26%), Gaps = 38/252 (15%)
Query: 301 TPREAGAWQVDQKP-LVGHTNSVEDLQWSPGE---------KRVLASCSVDLSIRIWDTR 350
+A W + + L+ N +++ P + K V D ++ +
Sbjct: 7 GKLKAPKWPILKNLELLQAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLK 66
Query: 351 VINTKSCMLTL-PNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFK- 408
T + + T P +IS L++ + I + D K + +
Sbjct: 67 DSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQ-ITILDS---KTNKVLREIEV 122
Query: 409 HHTAPVTTVEWHPTESST-FASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIH 467
+ + H ++ F I + ++
Sbjct: 123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS---------------QYIVHSA 167
Query: 468 LGQKEIKELHWHPQLPGTIISTA--NSGFNIFRTISDLPSQLLFIHLGQKEIKELHWHPQ 525
E H +++ + +++ S + F + +IKE+ +
Sbjct: 168 KSDVEYSSGVLHKD--SLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADN 225
Query: 526 LPGTIISTANSG 537
G +
Sbjct: 226 --GYWMVVECDQ 235
Score = 47.4 bits (112), Expect = 1e-05
Identities = 20/162 (12%), Positives = 45/162 (27%), Gaps = 18/162 (11%)
Query: 380 LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALW 439
+ + +DG +H L+ K +++ T T + +QI +
Sbjct: 50 VCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITIL 109
Query: 440 DLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGT-IISTANSGFNIFR 498
D + EI ++ H ++ I N G F+
Sbjct: 110 DSKTNK---------------VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQ 154
Query: 499 TISDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNI 540
+ D ++ E H +++ + +
Sbjct: 155 SYEDDSQYIVHSAKSDVEYSSGVLHKD--SLLLALYSPDGIL 194
Score = 29.7 bits (66), Expect = 3.7
Identities = 10/115 (8%), Positives = 30/115 (26%), Gaps = 14/115 (12%)
Query: 653 SGHLTEGFAMDWSSTEPGV-LATGDCKRNIHIWTPREAGAWSVYLYTNRFGV-------- 703
E M + D + I + + + V+ +
Sbjct: 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD 181
Query: 704 ---LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCS 755
LA + ++ Q + V +++++++ ++ C
Sbjct: 182 SLLLALYSPDGILDVYNLSSP--DQASSRFPVDEEAKIKEVKFADNGYWMVVECD 234
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 77.3 bits (189), Expect = 5e-15
Identities = 31/160 (19%), Positives = 49/160 (30%), Gaps = 14/160 (8%)
Query: 287 VLATGDCKRNIHIWTPREAGAWQVDQK-------PLVGHTNSVEDLQWSPGEKRVLASCS 339
+ + + I + R QK L V D++W+P ++A C
Sbjct: 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169
Query: 340 VDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFK 399
D SI + T TLP T V + W+ + G +G + + +
Sbjct: 170 ADGSIAVLQVT--ETVKVCATLP--STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQE 225
Query: 400 KG---SSVATFKHHTAPVTTVEWHPTESSTFASGGADDQI 436
K H V V W T AD +
Sbjct: 226 KKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265
Score = 69.2 bits (168), Expect = 2e-12
Identities = 32/181 (17%), Positives = 54/181 (29%), Gaps = 25/181 (13%)
Query: 312 QKPLVGHTNSVEDLQWSPGEKR---VLASCSVDLSIRIWDTRVINTKS-------CMLTL 361
Q LV + L S + S I +D R + ++ L
Sbjct: 85 QGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL 144
Query: 362 PNAHTSDVNVISWNRTEP-LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWH 420
V + WN T P ++ DG I V + V T VT+V W
Sbjct: 145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTE---TVKVCATLPSTVAVTSVCWS 201
Query: 421 PTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHP 480
P + A G + + + ++ E K +P + + ++ W
Sbjct: 202 P-KGKQLAVGKQNGTVVQYLPTLQ----------EKKVIPCPPFYESDHPVRVLDVLWIG 250
Query: 481 Q 481
Sbjct: 251 T 251
Score = 44.9 bits (105), Expect = 8e-05
Identities = 28/211 (13%), Positives = 53/211 (25%), Gaps = 30/211 (14%)
Query: 564 ESEGSGDEDRRKDPVMNSYFIRHRGCINRVRTCQYGSTTLAGVW--GEVGKVGIWDLKTA 621
GD+ + + + + I+ + T A + + +D++T
Sbjct: 69 IQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTF 128
Query: 622 LQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNI 681
K P M W+ T P ++A +I
Sbjct: 129 SNE--------------AKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174
Query: 682 HIWTPREAGAWSVYLYTNRFGV-----------LATGDCKRNIHIWTPREAGAWQVDQKP 730
+ E L + V LA G + + P + P
Sbjct: 175 AVLQVTETVKVCATL-PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP 233
Query: 731 LVG--HTNSVEDLQWSPGEKRVLASCSVDRS 759
H V D+ W + + D +
Sbjct: 234 FYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264
Score = 42.2 bits (98), Expect = 5e-04
Identities = 28/221 (12%), Positives = 58/221 (26%), Gaps = 16/221 (7%)
Query: 159 GKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKP 218
K P M W+ T P ++A +I + E
Sbjct: 132 AKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA---- 187
Query: 219 LGGHTNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAM 278
T + + WS L + ++ + IP PP F S H +
Sbjct: 188 TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP-FYESDHPVRVLDV 246
Query: 279 DWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASC 338
W T + + ++ + + + +R
Sbjct: 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTER--QHH 304
Query: 339 SVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEP 379
I WD + +A +++V++++ +
Sbjct: 305 YYLSYIEEWDLVLAA---------SAASTEVSILARQSDQI 336
Score = 31.0 bits (69), Expect = 1.9
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 703 VLATGDCKRNIHIWTPREAGAWQVDQK-------PLVGHTNSVEDLQWSPGEKRVLASCS 755
+ + + I + R QK L V D++W+P ++A C
Sbjct: 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169
Query: 756 VDRSNRI 762
D S +
Sbjct: 170 ADGSIAV 176
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 69.7 bits (170), Expect = 9e-13
Identities = 19/138 (13%), Positives = 47/138 (34%), Gaps = 16/138 (11%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLS-IRIWDTRVINTKSCMLTLP-NAHTSDVNVI 372
+ HTN ++ ++ + +A+CS D + IR++ T + +DV +
Sbjct: 191 IKAHTNPIKMVRLNRKSDM-VATCSQDGTIIRVFKTE---DGVLVREFRRGLDRADVVDM 246
Query: 373 SWNRTEPLIVSGGDDGCIHVWDLR-----RFKKGSSVATFKHHTAPVTTVEWHPTES--- 424
W+ + D +HV+++ + K+ + + + +
Sbjct: 247 KWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHV 306
Query: 425 --STFASGGADDQIALWD 440
A + +W
Sbjct: 307 RGCKIAWISESSLVVVWP 324
Score = 53.1 bits (127), Expect = 2e-07
Identities = 34/222 (15%), Positives = 73/222 (32%), Gaps = 23/222 (10%)
Query: 314 PLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVIS 373
P +N V D +++ ++ L + S I+ N + V
Sbjct: 14 PENHVSNPVTDYEFNQ-DQSCLILST-LKSFEIY-----NVHPVAHIMSQEMRHLSKVRM 66
Query: 374 WNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGAD 433
+RT + G +H+WD K V+ K PV + S F
Sbjct: 67 LHRTNYVAFVTGVKEVVHIWD---DVKKQDVSRIKVDA-PVKDLFL----SREFIVVSYG 118
Query: 434 DQIALWDLA-VERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANS 492
D I+++ + + R + + + LL ++ + + ++H + S
Sbjct: 119 DVISVFKFGNPWKRITDDIRFGGVCEFSNGLL-VYSNEFNLGQIHITKL--QSSGSATTQ 175
Query: 493 GFNIFRTISDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTA 534
+ + L+ H IK + + + +++T
Sbjct: 176 DQGVQQKAILGKGVLIKAH--TNPIKMVRLNRK--SDMVATC 213
Score = 48.9 bits (116), Expect = 4e-06
Identities = 8/89 (8%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 352 INTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHT 411
+ T++ ++ N ++ V +N+ + ++ ++++
Sbjct: 6 MITRNPIVPE-NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-----IMSQEM 58
Query: 412 APVTTVEWHPTESSTFASGGADDQIALWD 440
++ V + G + + +WD
Sbjct: 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWD 87
Score = 48.5 bits (115), Expect = 6e-06
Identities = 16/148 (10%), Positives = 44/148 (29%), Gaps = 19/148 (12%)
Query: 263 PPLFSFSGHLTEGFAMDWSSTEPGVLATG-DCKRNIHIWTPREAGAWQVDQKPLVGHTNS 321
H + + ++AT I ++ + + +
Sbjct: 186 GKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVRE----FRRGLDR 240
Query: 322 VE--DLQWSPGEKRVLASCSVDLSIRIWD--TRVINTKSCM--LTLPNAHTSDVNVISWN 375
+ D++WS + LA S ++ +++ N + + S+ ++ ++
Sbjct: 241 ADVVDMKWSTDGSK-LAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFK 299
Query: 376 RTEP------LIVSGGDDGCIHVWDLRR 397
+ I + + VW R
Sbjct: 300 LSVDKHVRGCKIAWISESSLVVVWPHTR 327
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 1e-04
Identities = 76/511 (14%), Positives = 137/511 (26%), Gaps = 156/511 (30%)
Query: 130 LTSTEEDNERELED--DENDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSST 187
L+ EE ++ +E+ N F L K + P + T L ++
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDRL-------YNDN 123
Query: 188 EPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQL 247
+ K N+ R +P L+ AL + +
Sbjct: 124 QVFA------KYNV----SRL--------QPY------------LKLRQALLELRPAKNV 153
Query: 248 AEHNKKRG-KGPG---IPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPR 303
G G G + S+ F + W L +C +
Sbjct: 154 LID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFW-------LNLKNCNSPETVLEML 202
Query: 304 EAGAWQVDQ---------KPLVGHTNSVED----LQWSPGEKRVLASCSVDLSIR-IWDT 349
+ +Q+D + +S++ L S + L L + + +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL------LVLLNVQNA 256
Query: 350 RVINT--KSC--MLTLPNAHTSDVNV---ISWNRTEPLIVSGGDDGCIHVWDLRRFKKGS 402
+ N SC +LT T V +S T + +
Sbjct: 257 KAWNAFNLSCKILLT-----TRFKQVTDFLSAATTTHISLDHHSMT---------LTPDE 302
Query: 403 SVATF------KHHTAPVTTVEWHPTESSTFASGGADDQIALWD--LAVERDSEIEQREA 454
+ + P + +P S A D +A WD V D E+
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES-IRDGLATWDNWKHVNCDKLTTIIES 361
Query: 455 ELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIFRTISDLPSQLLFIHLGQ 514
L L E +++ ++F + +P+ LL
Sbjct: 362 SLNVLEP---------AEYRKMFDR--------------LSVFPPSAHIPTILL------ 392
Query: 515 KEIKELHWH---PQLPGTII------STANSGFNIFRTISMSNL---TSTEEDNEREL-- 560
L W ++ S TIS+ ++ + +NE L
Sbjct: 393 ----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-TISIPSIYLELKVKLENEYALHR 447
Query: 561 ---EDDESEGSGDEDRRKDPVMNSYFIRHRG 588
+ + D D P ++ YF H G
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Score = 37.5 bits (86), Expect = 0.020
Identities = 58/439 (13%), Positives = 103/439 (23%), Gaps = 140/439 (31%)
Query: 446 DSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIFRTISDLPS 505
D E + + + KD+ + + + D+P
Sbjct: 8 DFETGEHQYQYKDI-----LSVFEDAFVDNFD-------------------CKDVQDMPK 43
Query: 506 QLLFIHLGQKEIKELHWHPQ-------LPGTIISTANSGFNIF-RTISMSN---LTST-- 552
+L ++EI + L T++S F + N L S
Sbjct: 44 SIL----SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 553 EEDNERELEDDESEGSGDEDRRKDPVMNSYFIRHRGCINRVRTCQY-----GSTTLAGVW 607
E + + D + V Y + ++R + + GV
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 608 GEVGKVGIWDLKTALQTVDD-------PFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGF 660
G GK + AL F++ N K P L + +
Sbjct: 160 G-SGK---TWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 661 A--MDWSSTEPGVLATGDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTP 718
D SS IH Y N VL ++
Sbjct: 214 TSRSDHSSNIK---------LRIHSIQAELRRLLKSKPYENCLLVL---L-----NVQNA 256
Query: 719 REAGAWQVDQKPLV-----GHTN----------SVEDLQW--SPGE-KRVLASCSVDRSN 760
+ A+ + K L+ T+ S++ +P E K +L
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY------ 310
Query: 761 RIGARRDML---YCFFVSLVHCIFV------------WLKY---------QLFVDV---- 792
+ R L I W + ++V
Sbjct: 311 -LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 793 ----YYWAFVDLVYYIFPD 807
+ +FP
Sbjct: 370 EYRKMFDRLS-----VFPP 383
Score = 35.2 bits (80), Expect = 0.092
Identities = 95/584 (16%), Positives = 162/584 (27%), Gaps = 174/584 (29%)
Query: 16 NDIVD-------NDSD----EDMEQGEESKDKTKPDESKEEKEKKTRKVYLPGTPLDKGE 64
DI+ ++ D +DM + SK++ D K+ + + L T L K E
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 65 SLVY------DPSAYVMLHEAQTGAPCLSFDIIKDELGDERTAYPQTLYAVAGTQSKKFN 118
+V Y L IK E + + +Y + + +N
Sbjct: 77 EMVQKFVEEVLRINYKFLMSP-----------IKTE--QRQPSMMTRMY--IEQRDRLYN 121
Query: 119 FNRLIVMKMSNLTSTEEDNE-----RELEDDENDPFQLAEHNKKRG-KGPG---IPTPPL 169
N++ K N++ + + EL +N + G G G +
Sbjct: 122 DNQVFA-KY-NVSRLQPYLKLRQALLELRPAKN----VLID----GVLGSGKTWVALDVC 171
Query: 170 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDL 229
S+ F + W L +C + + +Q+D
Sbjct: 172 LSYKVQCKMDFKIFW-------LNLKNCNSPETVLEMLQKLLYQIDPN------------ 212
Query: 230 QWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMD--WSSTEPGV 287
W+ + + +R L + + +
Sbjct: 213 -WTSRSDHSSNIKLRIHSIQAELRR----------LLKSKPYENCLLVLLNVQN---AKA 258
Query: 288 LATGD--CKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQW--SPGE-KRVLASCSVDL 342
+ CK I + T R H S++ +P E K +L L
Sbjct: 259 WNAFNLSCK--ILL-TTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKY---L 311
Query: 343 SIRIWDTRVINTKSCMLTLPN-AHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKG 401
R D LP T++ +S +I DG WD +K
Sbjct: 312 DCRPQD------------LPREVLTTNPRRLS------IIAESIRDGLAT-WD--NWKH- 349
Query: 402 SSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPS 461
V K T ESS A+ + L+V S +P+
Sbjct: 350 --VNCDKLTTI---------IESSLNVLEPAEYRKMFDRLSVFPPSA---------HIPT 389
Query: 462 QLLFIHLGQKEIKELHWH---PQLPGTII------STANSGFNIFRTISDLPSQLLFIHL 512
LL L W ++ S TIS +PS L + +
Sbjct: 390 ILL----------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-TIS-IPSIYLELKV 437
Query: 513 GQKEIKELHWHPQLPGTIISTANSGFNIFRTISMSNLTSTEEDN 556
+ LH +I+ +NI +T +L D
Sbjct: 438 KLENEYALH------RSIVDH----YNIPKTFDSDDLIPPYLDQ 471
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.20
Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 70/176 (39%)
Query: 493 GFNIFRTISDLPSQLLFIHLGQK--EIKELH----WHPQLPGTIISTANSGFNIFRTISM 546
GF+I + + P L G+K I+E + + + G + + IF+ I+
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE-----KIFKEINE 1712
Query: 547 SNLTSTEEDNEREL------------------EDDESEGSGDEDRRKDPVMNSYFIRHRG 588
+ + T + L ED +S+G D + F H
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD--------ATFAGH-- 1762
Query: 589 CINRVRTCQYGSTTLAGVWGE----VGKVGIWDLKTALQTVDDPFQLAEHNKKRGK 640
S L GE + +++ ++ V RG
Sbjct: 1763 -----------S--L----GEYAALASLADVMSIESLVEVV----------FYRGM 1791
Score = 30.0 bits (67), Expect = 4.5
Identities = 45/241 (18%), Positives = 69/241 (28%), Gaps = 106/241 (43%)
Query: 10 PALEASNDIVDNDSDEDMEQGEESKDKTKP-----DESKEEKEKKTRKV--YLPGTPLDK 62
P I++ DS E+ E G S P + ++E+ + K +LP +
Sbjct: 315 PNTSLPPSILE-DSLENNE-GVPS-----PMLSISNLTQEQVQDYVNKTNSHLPAG--KQ 365
Query: 63 GE-SLVYDPSAYVMLHEAQTGAPCLSFDIIKDELGDERTAYPQTLY----------AVAG 111
E SLV V+ +G PQ+LY A +G
Sbjct: 366 VEISLVNGAKNLVV-----SG-------------------PPQSLYGLNLTLRKAKAPSG 401
Query: 112 T-QSK-KFNFNRLIVMKMSNLTSTEEDNERELEDDENDPFQLAEHNKKRGKGPGIPTPPL 169
QS+ F+ R + L PF H
Sbjct: 402 LDQSRIPFS-ERKLKFSNRFLPVAS-------------PF----H--------------- 428
Query: 170 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDL 229
S L A D L D +N + ++ Q+ P+ T DL
Sbjct: 429 ---SHLLVP--ASD--------LINKDLVKNNVSFNAKD---IQI---PVY-DTFDGSDL 468
Query: 230 Q 230
+
Sbjct: 469 R 469
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling,
nucleocytoplasmic transport, protein transport; HET:
PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Length = 452
Score = 34.0 bits (77), Expect = 0.21
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 351 VINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHH 410
+ +T +L L N + V + W + VS D I + + + G
Sbjct: 72 ISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPK------- 124
Query: 411 TAPVTTVEWHP--TESSTFASGGADDQIALWDLAVERDSEI 449
+ + V +HP S DD I ++D+ ++ I
Sbjct: 125 -SSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI 164
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia,
homologous recomination, polymorphism, phosphoprotein,
beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB:
3eu7_A
Length = 356
Score = 33.7 bits (76), Expect = 0.24
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 335 LASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVW 393
A+ +I IWD C LP + + W+ T+ +++G DG I V+
Sbjct: 298 AAAILTSGTIAIWDLL---LGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.29
Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 434 DQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQ 481
+ I W E+ +++ +A K + + +K+++E W+ +
Sbjct: 85 ESIRKW--REEQRKRLQELDAASKVMEQEW--REKAKKDLEE--WNQR 126
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 33.2 bits (75), Expect = 0.31
Identities = 13/48 (27%), Positives = 17/48 (35%)
Query: 6 LNSCPALEASNDIVDNDSDEDMEQGEESKDKTKPDESKEEKEKKTRKV 53
+ LE +D D E + S + S EE K RKV
Sbjct: 217 AEAQRDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRKV 264
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 31.4 bits (72), Expect = 1.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 13 EASNDIVDNDSDEDMEQGEESKDKTKPDESKEEKEKKTRKVY 54
+ + + + E+ E+S D+ +E +EEK+ KT+KV
Sbjct: 218 TETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVE 259
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins,
electron transfer complex, TTQ, electron transport,
oxidoreductase, periplasm, transport, metal- binding;
HET: TRQ; 2.50A {Paracoccus versutus}
Length = 426
Score = 31.2 bits (69), Expect = 1.7
Identities = 21/266 (7%), Positives = 61/266 (22%), Gaps = 12/266 (4%)
Query: 160 KGPGIPTPPLFSFSGHLTEGFAMDWS-STEPGVLATGDCKRNIHIWTPREAGAWQVDQKP 218
+ + + + +S + GV+ + + P +
Sbjct: 172 RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTV 231
Query: 219 LGGHTNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAM 278
+ + + + E + + + F
Sbjct: 232 FYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQA 291
Query: 279 DWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASC 338
D ++ A + G WQ + Q + + +
Sbjct: 292 DLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASR- 350
Query: 339 SVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRF 398
+ + + T + + H D +S + L +H++D
Sbjct: 351 ----FVVVLNAE---TGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403
Query: 399 KKGSSVATFKHHTAPVTTVEWHPTES 424
++ + + + H +S
Sbjct: 404 EE---LRSVDQLGRGPQIITTHDMDS 426
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.7
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 6/21 (28%)
Query: 45 EKE--KK---TRKVYLPGT-P 59
EK+ KK + K+Y + P
Sbjct: 18 EKQALKKLQASLKLYADDSAP 38
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 30.9 bits (70), Expect = 2.0
Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 8/119 (6%)
Query: 324 DLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVS 383
SP +V + + + I DT T + + T+P + +S + + + V+
Sbjct: 36 GAVISPDGTKVYVANAHSNDVSIIDTA---TNNVIATVPAGSSPQGVAVSPDGKQ-VYVT 91
Query: 384 GGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ V D + T K +P + P + + D +++ +
Sbjct: 92 NMASSTLSVIDT---TSNTVAGTVKTGKSP-LGLALSPDGKKLYVTNNGDKTVSVINTV 146
Score = 29.7 bits (67), Expect = 4.4
Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 10/124 (8%)
Query: 320 NSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP-NAHTSDVNVISWNRTE 378
+S + + SP K+V + ++ + DT + + T+ + + +
Sbjct: 74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDT---TSNTVAGTVKTGKSPLGLALSPDGKK- 129
Query: 379 PLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIAL 438
L V+ D + V + + T +P + P + + + I++
Sbjct: 130 -LYVTNNGDKTVSVINTVTKAV---INTVSVGRSP-KGIAVTPDGTKVYVANFDSMSISV 184
Query: 439 WDLA 442
D
Sbjct: 185 IDTV 188
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 30.5 bits (68), Expect = 2.2
Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 380 LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALW 439
I++ + V D + + P P +A+ + +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTP-MVPMVAPGGRIAYATVNKSESLVKI 61
Query: 440 DLA 442
DL
Sbjct: 62 DLV 64
>3uyp_B Envelope protein; dengue antibody neutralization, immune system;
2.00A {Dengue virus 4} PDB: 2h0p_A 4am0_Q
Length = 114
Score = 28.0 bits (62), Expect = 5.6
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 380 LIVSGGDDGCIHVWDLRRFKKGSSVATFKHH 410
+++ GD W F+KGSS+ +HH
Sbjct: 84 IVIGVGDSALTLHW----FRKGSSIGKLEHH 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.424
Gapped
Lambda K H
0.267 0.0860 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,817,644
Number of extensions: 775101
Number of successful extensions: 3525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2064
Number of HSP's successfully gapped: 615
Length of query: 812
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 711
Effective length of database: 3,881,772
Effective search space: 2759939892
Effective search space used: 2759939892
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.0 bits)