RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4510
(812 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 92.5 bits (228), Expect = 8e-21
Identities = 30/163 (18%), Positives = 62/163 (38%), Gaps = 11/163 (6%)
Query: 278 MDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLAS 337
+ + + +G C + +W RE Q GH + + + + P A+
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQT----FTGHESDINAICFFPNGNA-FAT 243
Query: 338 CSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRR 397
S D + R++D R + + +S++++ L+++G DD +VWD
Sbjct: 244 GSDDATCRLFDLRADQELMTYS--HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL- 300
Query: 398 FKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
K H V+ + + A+G D + +W+
Sbjct: 301 --KADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340
Score = 71.3 bits (173), Expect = 7e-14
Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 8/131 (6%)
Query: 264 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVE 323
+F+GH ++ A+ + ATG ++ R +
Sbjct: 218 CRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHD--NIICGIT 274
Query: 324 DLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVS 383
+ +S R+L + D + +WD L H + V+ + + +
Sbjct: 275 SVSFSKSG-RLLLAGYDDFNCNVWDAL---KADRAGVLA-GHDNRVSCLGVTDDGMAVAT 329
Query: 384 GGDDGCIHVWD 394
G D + +W+
Sbjct: 330 GSWDSFLKIWN 340
Score = 52.4 bits (124), Expect = 9e-08
Identities = 37/224 (16%), Positives = 67/224 (29%), Gaps = 18/224 (8%)
Query: 216 QKPLGGHTNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEG 275
++ L GH + W L + +L + + + +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-------KVHAIPLRSSWV 100
Query: 276 FAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVL 335
++ + V G G +V ++ +
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT- 159
Query: 336 ASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDL 395
S D + +WD + HT DV +S L VSG D +WD+
Sbjct: 160 --SSGDTTCALWDIETGQQTTTF----TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Query: 396 RRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALW 439
R +G TF H + + + + P + FA+G D L+
Sbjct: 214 R---EGMCRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLF 253
Score = 46.7 bits (109), Expect = 6e-06
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 16/126 (12%)
Query: 648 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWSVYLYTNRFGV---- 703
+F+GH ++ A+ + D + + G+
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 704 -------LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSV 756
L G N ++W +A V L GH N V L + + +A+ S
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGV----LAGHDNRVSCLGVTD-DGMAVATGSW 332
Query: 757 DRSNRI 762
D +I
Sbjct: 333 DSFLKI 338
Score = 39.7 bits (91), Expect = 0.001
Identities = 31/181 (17%), Positives = 53/181 (29%), Gaps = 58/181 (32%)
Query: 168 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAE 227
+F+GH ++ A+ + ATG ++ R
Sbjct: 218 CRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTY------------ 264
Query: 228 DLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGV 287
++ + +V FS SG L
Sbjct: 265 --SHDNIICGITSVS-----------------------FSKSGRL--------------- 284
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
L G N ++W +A V L GH N V L + + +A+ S D ++IW
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGV----LAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIW 339
Query: 348 D 348
+
Sbjct: 340 N 340
Score = 31.6 bits (70), Expect = 0.32
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 728 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDRS 759
++ L GH + + W + L S S D
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRL-LVSASQDGK 78
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 91.7 bits (226), Expect = 1e-20
Identities = 54/328 (16%), Positives = 111/328 (33%), Gaps = 65/328 (19%)
Query: 164 IPTPP-LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGH 222
IP PP ++ SGH + + + V+ + I +W ++ L GH
Sbjct: 4 IPRPPEKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYET----GDFERTLKGH 58
Query: 223 TNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTP------------------- 263
T+S +D+ + L + + + + +
Sbjct: 59 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118
Query: 264 ----------------PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWT------ 301
+ +F+GH + + ++A+ + + +W
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKEC 177
Query: 302 ---------PREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVI 352
E +W + + + + S L S S D +I++WD
Sbjct: 178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-- 235
Query: 353 NTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTA 412
T C++TL H + V + ++ I+S DD + VWD + + T H
Sbjct: 236 -TGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK---NKRCMKTLNAHEH 290
Query: 413 PVTTVEWHPTESSTFASGGADDQIALWD 440
VT++++H T + +G D + +W+
Sbjct: 291 FVTSLDFHKT-APYVVTGSVDQTVKVWE 317
Score = 58.6 bits (140), Expect = 1e-09
Identities = 42/335 (12%), Positives = 94/335 (28%), Gaps = 45/335 (13%)
Query: 363 NAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPT 422
+ H S V + ++ ++VS +D I VWD G T K HT V + + +
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE---TGDFERTLKGHTDSVQDISFDHS 70
Query: 423 ESSTFASGGADDQIALWDLAVERDSEI---EQREAELKDLPSQLLFIHLGQKEIKELHWH 479
+ E + + + + +P+ + + + ++
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 480 PQLPGTIISTANSGFNIFRTISDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFN 539
T + + + L+ + ++ + +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189
Query: 540 IFRTISMSNLTSTEEDNERELEDDESEG----SGDEDRR------KDPVMNSYFIRHRGC 589
S+ +S E E + G SG D+ + + H
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249
Query: 590 INRVRTCQYGSTTLAGVWGEVGKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPL 649
+ V G L+ + + +WD K +
Sbjct: 250 VRGVLFHSGGKFILSC--ADDKTLRVWDYKNK-------------------------RCM 282
Query: 650 FSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW 684
+ + H ++D+ T P + TG + + +W
Sbjct: 283 KTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVW 316
Score = 51.3 bits (121), Expect = 2e-07
Identities = 39/367 (10%), Positives = 93/367 (25%), Gaps = 61/367 (16%)
Query: 400 KGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAV-ERDSEIEQREAELKD 458
+ H +PVT V +HP S S D I +WD + + ++ ++D
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64
Query: 459 LPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSG-FNIFRTISDLPSQLLFIHLGQKEI 517
+ L G G + ++S +P+ + + +
Sbjct: 65 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124
Query: 518 KELHWHPQLPGTIISTANSGFNIFRTISMSN--LTSTEEDNERELEDDESEGSGDEDRRK 575
++ T + + + + S D + +
Sbjct: 125 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT---------- 174
Query: 576 DPVMNSYFIRHRGCINRVRTCQYGSTTLAGVWGEVGKVGIWDLKTALQTVDDPFQLAEHN 635
+ HR + + S + L + + +
Sbjct: 175 -KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233
Query: 636 KKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWSVY 695
G L + GH + + S + + + + +W +
Sbjct: 234 VSTGM-------CLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYK-------- 277
Query: 696 LYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCS 755
C + ++ H + V L + + + S
Sbjct: 278 ----------NKRCMKTLN------------------AHEHFVTSLDFHKTAPY-VVTGS 308
Query: 756 VDRSNRI 762
VD++ ++
Sbjct: 309 VDQTVKV 315
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 88.7 bits (218), Expect = 2e-19
Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 20/180 (11%)
Query: 278 MDWSSTEPGVLATGDCKRNIHIWTPREAGAWQV---DQKPLVGHTNSVEDLQWSPGEKRV 334
+ S + +A G R + +W + + + GH +SV + ++ +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS- 268
Query: 335 LASCSVDLSIRIWDTRVINTKSCM--------LTLPNAHTSDVNVISWNRTEPLIVSGGD 386
+ S S+D S+++W+ + N KS H V ++ + + I+SG
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 328
Query: 387 DGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTES-----STFASGGADDQIALWDL 441
D + WD + G+ + + H V +V S + FA+G D + +W
Sbjct: 329 DRGVLFWDKK---SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
Score = 72.9 bits (177), Expect = 3e-14
Identities = 47/336 (13%), Positives = 91/336 (27%), Gaps = 61/336 (18%)
Query: 167 PPLFSFSGHLTEG--FAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTN 224
P + H F +D S ++ P V+ HT+
Sbjct: 4 VPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTS 63
Query: 225 SAEDLQWS----------DLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTE 274
+++S + T + V D +A + S
Sbjct: 64 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123
Query: 275 GFAMDWSSTEPGVLATGDCKRNIH------------------------------------ 298
++ +S + + +
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183
Query: 299 IWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTR---VINTK 355
T R + + V + SPG+ + +A+ S+D ++R+WD+ ++
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243
Query: 356 SCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKK---------GSSVAT 406
H V + + R +VSG D + +W+L+ G+ T
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303
Query: 407 FKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ H V +V SG D + WD
Sbjct: 304 YIGHKDFVLSVATTQN-DEYILSGSKDRGVLFWDKK 338
Score = 66.4 bits (160), Expect = 5e-12
Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 20/162 (12%)
Query: 250 HNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGA-- 307
+ + G S +GH +++ ++ + +G R++ +W + A
Sbjct: 232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKS 290
Query: 308 ------WQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTL 361
+ +GH + V + + ++ + S S D + WD + + + +L L
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKK---SGNPLLML 346
Query: 362 PNAHTSDV------NVISWNRTEPLIVSGGDDGCIHVWDLRR 397
H + V N S + +G D +W ++
Sbjct: 347 Q-GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
Score = 36.3 bits (82), Expect = 0.011
Identities = 8/62 (12%), Positives = 20/62 (32%)
Query: 693 SVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLA 752
+ L + ++ P V+ + HT+ V +++S + +
Sbjct: 20 LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT 79
Query: 753 SC 754
C
Sbjct: 80 GC 81
Score = 34.0 bits (76), Expect = 0.066
Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 4/110 (3%)
Query: 662 MDWSSTEPGVLATGDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREA 721
+ S + V + E G +V + +A G R + +W
Sbjct: 178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 237
Query: 722 GAWQV---DQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRIGARRDM 768
+ + + GH +SV + ++ + + S S+DRS ++ ++
Sbjct: 238 FLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNA 286
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 71.0 bits (172), Expect = 1e-13
Identities = 44/353 (12%), Positives = 103/353 (29%), Gaps = 20/353 (5%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
+A +HI+ QV L H V + W+P R + +C D + +W
Sbjct: 22 IAICPNNHEVHIYEKSGNKWVQV--HELKEHNGQVTGVDWAPDSNR-IVTCGTDRNAYVW 78
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATF 407
+ K + + + W E G I + +
Sbjct: 79 TLKGRTWKPTL--VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 136
Query: 408 KHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIH 467
K S A+G D + ++ ++ E +P L
Sbjct: 137 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE 196
Query: 468 LGQKEIKELHWHPQLPGTIISTANSGFNIFRTISDLPSQLLFIHLGQKEIKELHWHPQLP 527
G+ ++ + + +D + + + + + +
Sbjct: 197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE-- 254
Query: 528 GTIISTANSGFNIFRTISMSN--------LTSTEEDNERELEDDESEGSGDEDRRKD--- 576
++++ + F + T + L ++ ++R L E + D+ +
Sbjct: 255 SSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 314
Query: 577 PVMNSYFIRHRGCINRVRTCQYGSTTLAGVW--GEVGKVGIWDLKTALQTVDD 627
H+ ++++ G + G G + IWD+++ + D
Sbjct: 315 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKD 367
Score = 64.9 bits (156), Expect = 1e-11
Identities = 49/397 (12%), Positives = 98/397 (24%), Gaps = 54/397 (13%)
Query: 369 VNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFA 428
++ +WN+ I ++ +H+++ K V K H VT V+W P S+
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPD-SNRIV 67
Query: 429 SGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIIS 488
+ G D +W L I + + + W P +
Sbjct: 68 TCGTDRNAYVWTLKGRTWKPTL--------------VILRINRAARCVRWAPNEKKFAVG 113
Query: 489 TANSGFNIFRTISDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIFRTISMSN 548
+ + +I H + T++S ++ +
Sbjct: 114 SGSRVISICY-----------FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 162
Query: 549 LTSTEEDNERELEDDESEGSGDEDRRKDPVMNSYFIRHRGCINRVRTCQYGSTTLAGVWG 608
+ ++ + + + G ++ V GS
Sbjct: 163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA--WVS 220
Query: 609 EVGKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTE 668
V + D + + +GH + S
Sbjct: 221 HDSTVCLADADKKMAVATLASETLPLLAVTFITES-----SLVAAGHDCFPVLFTYDS-- 273
Query: 669 PGVLATGDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQ 728
A G + P+++ + D K + AG
Sbjct: 274 ----AAGKLSFGGRLDVPKQSSQRGL----TARERFQNLDKKASSEGSAAAGAGLDS--- 322
Query: 729 KPLVGHTNSVEDLQWSPGEK---RVLASCSVDRSNRI 762
H NSV + G K + +D I
Sbjct: 323 ----LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI 355
Score = 56.0 bits (133), Expect = 8e-09
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 318 HTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRT 377
+ W+ ++ +A C + + I++ N + L H V + W
Sbjct: 6 LVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSG-NKWVQVHEL-KEHNGQVTGVDWAPD 62
Query: 378 EPLIVSGGDDGCIHVWD 394
IV+ G D +VW
Sbjct: 63 SNRIVTCGTDRNAYVWT 79
Score = 45.2 bits (105), Expect = 2e-05
Identities = 41/263 (15%), Positives = 73/263 (27%), Gaps = 28/263 (10%)
Query: 192 LATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQLAEHN 251
+A +HI+ QV L H + W+ + T
Sbjct: 22 IAICPNNHEVHIYEKSGNKWVQV--HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79
Query: 252 KKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVD 311
K T + + A G R I I + W V
Sbjct: 80 LKG------RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 133
Query: 312 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP--------- 362
+ ++V L W P + A+ S D RI+ + + P
Sbjct: 134 KHIKKPIRSTVLSLDWHPNSVLL-AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 192
Query: 363 -----NAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTV 417
++ V+ + ++ + D + + D + VAT T P+ V
Sbjct: 193 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA---VATLASETLPLLAV 249
Query: 418 EWHPTESSTFASGGADDQIALWD 440
+ S+ + G D L+
Sbjct: 250 TFITE--SSLVAAGHDCFPVLFT 270
Score = 42.2 bits (97), Expect = 2e-04
Identities = 22/167 (13%), Positives = 50/167 (29%), Gaps = 25/167 (14%)
Query: 296 NIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTK 355
+ + ++ L T + + + E ++A+ D ++ ++
Sbjct: 224 TVCLADAD----KKMAVATLASETLPLLAVTFIT-ESSLVAAGH-DCFPVLFT---YDSA 274
Query: 356 SCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVT 415
+ L+ S D G+ + + H V+
Sbjct: 275 AGKLSFG-GRLDVPKQSSQRGLTARERFQNLDKKASSEG--SAAAGAGLDSL--HKNSVS 329
Query: 416 TVEWHP---TESSTFASGGADDQIALWDLAVERDSEIEQREAELKDL 459
+ + S F + G D +++WD + E+ LKDL
Sbjct: 330 QISVLSGGKAKCSQFCTTGMDGGMSIWD--------VRSLESALKDL 368
Score = 41.0 bits (94), Expect = 4e-04
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 3/92 (3%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRIG 763
+A +HI+ QV L H V + W+P R + +C DR+ +
Sbjct: 22 IAICPNNHEVHIYEKSGNKWVQV--HELKEHNGQVTGVDWAPDSNR-IVTCGTDRNAYVW 78
Query: 764 ARRDMLYCFFVSLVHCIFVWLKYQLFVDVYYW 795
+ + + ++ + + +
Sbjct: 79 TLKGRTWKPTLVILRINRAARCVRWAPNEKKF 110
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 66.1 bits (159), Expect = 3e-12
Identities = 35/284 (12%), Positives = 77/284 (27%), Gaps = 18/284 (6%)
Query: 166 TPPLFSFSGHLTEG-FAMDWSSTEPG-VLATGDCKRNIHIWTPREAGAWQV----DQKPL 219
PP+ F+GH + + +S + L +GD + +W +
Sbjct: 52 VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF 111
Query: 220 GGHTNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMD 279
D+ W + E G + ++
Sbjct: 112 QVLAGPISDISWD------FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINAC 165
Query: 280 WSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCS 339
+ + ++ + + + V D+++SP + +
Sbjct: 166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 225
Query: 340 VDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFK 399
D I +D + + + +SW ++ + G D I VWD+
Sbjct: 226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVT--- 281
Query: 400 KGSSVATFKHHTAPV--TTVEWHPTESSTFASGGADDQIALWDL 441
V + + V T + S D + ++L
Sbjct: 282 TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
Score = 51.5 bits (121), Expect = 2e-07
Identities = 38/332 (11%), Positives = 96/332 (28%), Gaps = 16/332 (4%)
Query: 355 KSCMLTLPNAHTSDVNVISWNRTEPLIVSG-GDDGCIHVWDLRRFKKGSSVATFKHHTAP 413
K + P+ + +S++ T I G + D K V H ++
Sbjct: 6 KEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSV 65
Query: 414 VTTVEWHPTESSTF-ASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKE 472
VTTV++ P + S + SG ++ +W +++S + + + +
Sbjct: 66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF--------QVLAGP 117
Query: 473 IKELHWHPQLPGTIISTANSGFNIFRTISDLPSQLLFIHLGQKEIKELHWHPQLPGTIIS 532
I ++ W + + D + L + + I H P ++
Sbjct: 118 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177
Query: 533 TANSGFNIFRTISMSNLTSTEEDNERELEDDESEGSGDEDRRKDPVMNSYFIRHRGCINR 592
+ G +F ++++ + ++ + + S
Sbjct: 178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS 237
Query: 593 VRTCQYGSTTLAGVWGEVGKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSF 652
+Y V G + + D + D + + K ++
Sbjct: 238 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD-ATIRVWDVTTSK-----CVQKWTL 291
Query: 653 SGHLTEGFAMDWSSTEPGVLATGDCKRNIHIW 684
+ +T G + + ++ +
Sbjct: 292 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Score = 44.9 bits (104), Expect = 2e-05
Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 8/129 (6%)
Query: 318 HTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISW--N 375
N L + P + C +R D + ++ +S V + +
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGD-SKVPPVVQFTGHGSSVVTTVKFSPI 74
Query: 376 RTEPLIVSGGDDGCIHVWDLR-----RFKKGSSVATFKHHTAPVTTVEWHPTESSTFASG 430
+ + SG + G + VW + + + F+ P++ + W G
Sbjct: 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 134
Query: 431 GADDQIALW 439
D ++
Sbjct: 135 EGRDNFGVF 143
Score = 36.8 bits (83), Expect = 0.009
Identities = 34/281 (12%), Positives = 65/281 (23%), Gaps = 63/281 (22%)
Query: 262 TPPLFSFSGHLTEG-FAMDWSSTEPG-VLATGDCKRNIHIWTPREAGAWQV----DQKPL 315
PP+ F+GH + + +S + L +GD + +W +
Sbjct: 52 VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF 111
Query: 316 VGHTNSVEDLQWSP-GEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPN----------- 363
+ D+ W G + + D N+ +
Sbjct: 112 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171
Query: 364 -------------------------------AHTSDVNVISWNRTEPLIVSGGDDGCIHV 392
S V + ++ V
Sbjct: 172 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 231
Query: 393 WDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQR 452
+ + +S FA+ GAD I +WD+ +
Sbjct: 232 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK------- 284
Query: 453 EAELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSG 493
Q + Q +++ G IIS + G
Sbjct: 285 -------CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Score = 29.9 bits (65), Expect = 1.1
Identities = 27/304 (8%), Positives = 60/304 (19%), Gaps = 21/304 (6%)
Query: 476 LHWHPQLPGTIISTANSGFNIFRTISD----LPSQLLFIHLGQKEIKELHWHPQLPGTII 531
L + P I+ R + D +P + F G + + + P +
Sbjct: 23 LSYDPT--TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYL 80
Query: 532 STANSGFNIFRTISMSNLTSTEEDNERELEDDESEG-------SGDEDRR------KDPV 578
+ + + + S + + E G + R +D
Sbjct: 81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNF 140
Query: 579 MNSYFIRHRGCINRVRTCQYGSTTLAGVWGEVGKVGIWDLKTALQTVDDPFQLAEHNKKR 638
+ V + ++ P + +
Sbjct: 141 GVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT 200
Query: 639 GKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWSVYLYT 698
G + + L
Sbjct: 201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW 260
Query: 699 NRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDR 758
AT I +W + V + L + + + S S+D
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSK--CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318
Query: 759 SNRI 762
+
Sbjct: 319 TLNF 322
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 63.7 bits (153), Expect = 2e-11
Identities = 35/132 (26%), Positives = 49/132 (37%), Gaps = 18/132 (13%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISW 374
L GH + LQ+ R++ S S D +IR+WD + + V
Sbjct: 174 LNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVL------EGHEELVRCI 224
Query: 375 NRTEPLIVSGGDDGCIHVWDL------RRFKKGSSVATFKHHTAPVTTVEWHPTESSTFA 428
IVSG DG I VWDL R + T H+ V +++
Sbjct: 225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIV 281
Query: 429 SGGADDQIALWD 440
S DD I +WD
Sbjct: 282 SSSHDDTILIWD 293
Score = 53.7 bits (127), Expect = 3e-08
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 16/125 (12%)
Query: 276 FAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVL 335
+ ++ +G I +W L E ++ + + +
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIE-------CGACLRVLEGHEELVRCIRFDNKRI 231
Query: 336 ASCSVDLSIRIWDT------RVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGC 389
S + D I++WD R C+ TL H+ V + ++ E IVS D
Sbjct: 232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEHSGRVFRLQFD--EFQIVSSSHDDT 288
Query: 390 IHVWD 394
I +WD
Sbjct: 289 ILIWD 293
Score = 50.2 bits (118), Expect = 4e-07
Identities = 51/291 (17%), Positives = 91/291 (31%), Gaps = 35/291 (12%)
Query: 169 LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAED 228
+ S + + + + +G I IW ++ L GHT S
Sbjct: 8 IHCRSETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTLECKRI----LTGHTGSVLC 60
Query: 229 LQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVL 288
LQ+ + + D ++ + N I
Sbjct: 61 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS-------- 112
Query: 289 ATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWD 348
R+I +W ++ LVGH +V + + + + S S D +I++W+
Sbjct: 113 ----KDRSIAVWDMASPTDIT-LRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWN 164
Query: 349 TRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFK 408
T T + TL + + + L+VSG D I +WD+ +
Sbjct: 165 TS---TCEFVRTL---NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA------CLR 212
Query: 409 HHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDL 459
V ++ SG D +I +WDL D L+ L
Sbjct: 213 VLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 263
Score = 41.0 bits (94), Expect = 4e-04
Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 16/116 (13%)
Query: 660 FAMDWSSTEPGVLATGDCKRNIHIWTPR--------EAGAWSVYLYTNRFGVLATGDCKR 711
+ ++ +G I +W E V + +G
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDG 238
Query: 712 NIHIWTPREAGAWQVDQ-----KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
I +W A + + LV H+ V LQ+ + S S D + I
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE---FQIVSSSHDDTILI 291
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 63.3 bits (152), Expect = 3e-11
Identities = 10/82 (12%), Positives = 26/82 (31%)
Query: 358 MLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTV 417
++ + A ++ I ++ L++ DG + V+ K + + P+
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 418 EWHPTESSTFASGGADDQIALW 439
+ G +I
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKV 84
Score = 54.1 bits (128), Expect = 3e-08
Identities = 30/293 (10%), Positives = 68/293 (23%), Gaps = 22/293 (7%)
Query: 163 GIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGH 222
L + ++ + G + I + ++Q
Sbjct: 43 QAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANL 102
Query: 223 TNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSS 282
+ + G + + + + T+ ++
Sbjct: 103 GICRICKYGD------DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM 156
Query: 283 TEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDL 342
+ W G + D+ P E+ A S+D
Sbjct: 157 DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216
Query: 343 SIRIWD-----------TRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIH 391
+ + R + VN I ++ + + G DG I
Sbjct: 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS 276
Query: 392 VWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVE 444
W+L+ KK + F + V+ + + +DD +
Sbjct: 277 CWNLQTRKK---IKNFAKFN-EDSVVKIACS-DNILCLATSDDTFKTNAAIDQ 324
Score = 52.2 bits (123), Expect = 1e-07
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 317 GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNR 376
+ + D++ P + L S D S+ ++ + K+ L + + ++
Sbjct: 9 APKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDI-QAKNVDLLQSLRYKHPLLCCNFID 66
Query: 377 TEPLIVSGGDDGCIHVW 393
L + G +
Sbjct: 67 NTDLQIYVGTVQGEILK 83
Score = 36.8 bits (83), Expect = 0.010
Identities = 23/167 (13%), Positives = 51/167 (30%), Gaps = 7/167 (4%)
Query: 277 AMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLA 336
+ ++ +L ++ ++ + A VD + + + + + +
Sbjct: 16 DIKIIPSKS-LLLITSWDGSLTVYKF-DIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 337 SCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLR 396
+V I D L N + + +++ DG I V D R
Sbjct: 74 VGTVQGEILKVDLI---GSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130
Query: 397 RFKKGSSVATF--KHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
+ G ++T + T SS G + Q+ + L
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL 177
Score = 35.6 bits (80), Expect = 0.023
Identities = 6/92 (6%), Positives = 22/92 (23%), Gaps = 1/92 (1%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRIG 763
L ++ ++ + A VD + + + + + + +V
Sbjct: 26 LLITSWDGSLTVYKF-DIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84
Query: 764 ARRDMLYCFFVSLVHCIFVWLKYQLFVDVYYW 795
++ + + D
Sbjct: 85 DLIGSPSFQALTNNEANLGICRICKYGDDKLI 116
Score = 32.9 bits (73), Expect = 0.13
Identities = 4/39 (10%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 404 VATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
V + ++ ++ P+ S D + ++
Sbjct: 4 VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFD 41
Score = 31.4 bits (69), Expect = 0.42
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 733 GHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ + D++ P + L S D S +
Sbjct: 9 APKDYISDIKIIPSKSL-LLITSWDGSLTV 37
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 62.9 bits (151), Expect = 5e-11
Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 11/134 (8%)
Query: 308 WQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTS 367
+ Q T+ + L + P + + + V++ + H S
Sbjct: 213 REGRQLQQHDFTSQIFSLGYCPTGEWLAVGM------ESSNVEVLHVNKPDKYQLHLHES 266
Query: 368 DVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTF 427
V + + VS G D ++ W G+S+ K + V + +
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRT---PYGASIFQSKES-SSVLSCDISVD-DKYI 321
Query: 428 ASGGADDQIALWDL 441
+G D + ++++
Sbjct: 322 VTGSGDKKATVYEV 335
Score = 61.7 bits (148), Expect = 1e-10
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 6/103 (5%)
Query: 293 CKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVI 352
+ + D+ L H + V L+++ K S D + W T
Sbjct: 239 LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTP-- 295
Query: 353 NTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDL 395
+ + +S V + + IV+G D V+++
Sbjct: 296 -YGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 45.2 bits (105), Expect = 2e-05
Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 3/106 (2%)
Query: 317 GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP-NAHTSDVNVISWN 375
H V + S + + + +++WD KS + L + +
Sbjct: 49 NHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106
Query: 376 RTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHP 421
++ GG+ + +WDL A
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152
Score = 44.8 bits (104), Expect = 2e-05
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 365 HTSDVNVISWNRTEPLIVSGGDDGCIHVWDLR--RFKKGSSVATFKHHTAPVTTVEWHPT 422
H V ++ + + +GG GC+ VWD+ K S + + + + P
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Score = 32.5 bits (72), Expect = 0.19
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 378 EPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIA 437
+ V D I R ++ + T +H V V + +GG +
Sbjct: 22 QMQPVPFPPDALIGPGIPRHARQ---INTL-NHGEVVCAVTISN-PTRHVYTGG-KGCVK 75
Query: 438 LWDLA 442
+WD++
Sbjct: 76 VWDIS 80
Score = 32.1 bits (71), Expect = 0.25
Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 6/59 (10%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ ++ W ++SV S +K + + S D+ +
Sbjct: 280 FVSTGKDNLLNAWRTPYG-----ASIFQSKESSSVLSCDISVDDKY-IVTGSGDKKATV 332
Score = 31.3 bits (69), Expect = 0.44
Identities = 14/110 (12%), Positives = 24/110 (21%), Gaps = 3/110 (2%)
Query: 704 LATGDCKRNIHIWTPREAGAWQ-VDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ TG K + +W G V Q + N + + P + L + I
Sbjct: 66 VYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSI 123
Query: 763 GARRDMLYCFFVSLVHCIFVWLKYQLFVDVYYWAFVDLVYYIFPDLHYFF 812
L + D I +
Sbjct: 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ 173
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 61.5 bits (147), Expect = 9e-11
Identities = 40/299 (13%), Positives = 72/299 (24%), Gaps = 44/299 (14%)
Query: 168 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAE 227
L + SGH A+ + L +G I W+ H+N
Sbjct: 5 VLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSS---------SSMHQDHSNLIV 50
Query: 228 DLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDW------- 280
L S + D K G + D
Sbjct: 51 SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 110
Query: 281 -------------SSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQW 327
S+ + + +V +
Sbjct: 111 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISI 170
Query: 328 SPGEKRVLASCSVDLSIRIW------DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLI 381
SP E + A + + T ++ + + ++ E L+
Sbjct: 171 SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV 230
Query: 382 VSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
+G D I ++ ++ + + H V + W ST S GAD I W+
Sbjct: 231 ATGSLDTNIFIYSVK--RPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWN 285
Score = 41.1 bits (94), Expect = 3e-04
Identities = 26/322 (8%), Positives = 67/322 (20%), Gaps = 47/322 (14%)
Query: 364 AHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTE 423
H + ++ N ++SG DG I W + H+ + +++ +
Sbjct: 11 GHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQD--------HSNLIVSLDNSKAQ 58
Query: 424 SSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLP 483
+ S ++ L + +
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118
Query: 484 GTIISTANSGFNIFRTISDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIFRT 543
+A S + + + + L + S +
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178
Query: 544 ISMSNLTSTEEDNERELEDDESEGSGDEDRRKDPVMNSYFIRHRGCINRVRTCQYGSTTL 603
++ + + + R + + + L
Sbjct: 179 AGD---------VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL 229
Query: 604 AGVWGEVGKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMD 663
+ I+ +K P + + + H +
Sbjct: 230 VATGSLDTNIFIYSVKR------------------------PMKIIKALNAHKDGVNNLL 265
Query: 664 WSSTEPGVLATGDCKRNIHIWT 685
W + P L + I W
Sbjct: 266 WET--PSTLVSSGADACIKRWN 285
Score = 38.0 bits (86), Expect = 0.003
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 5/86 (5%)
Query: 677 CKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTN 736
+ + + ++ATG NI I++ + K L H +
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII---KALNAHKD 259
Query: 737 SVEDLQWSPGEKRVLASCSVDRSNRI 762
V +L W L S D +
Sbjct: 260 GVNNLLWETPST--LVSSGADACIKR 283
Score = 38.0 bits (86), Expect = 0.004
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 404 VATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ T H +T + +P SG D +I W +
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSS 39
Score = 28.8 bits (62), Expect = 2.5
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 729 KPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
K + GH + L +P L S S D
Sbjct: 7 KTISGHNKGITALTVNP-----LISGSYDGRIME 35
Score = 27.2 bits (58), Expect = 8.0
Identities = 10/85 (11%), Positives = 20/85 (23%), Gaps = 9/85 (10%)
Query: 700 RFGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRS 759
L +G I W+ H+N + L S ++ S
Sbjct: 20 TVNPLISGSYDGRIMEWSS---------SSMHQDHSNLIVSLDNSKAQEYSSISWDDTLK 70
Query: 760 NRIGARRDMLYCFFVSLVHCIFVWL 784
+ + V+ +
Sbjct: 71 VNGITKHEFGSQPKVASANNDGFTA 95
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 58.8 bits (140), Expect = 7e-10
Identities = 39/296 (13%), Positives = 80/296 (27%), Gaps = 32/296 (10%)
Query: 172 FSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDL-- 229
GH A+ S+ L + D + +I+ W + ++ H +
Sbjct: 8 RYGHNKAITALSSSADGK-TLFSADAEGHINSW---DISTGISNRVFPDVHATMITGIKT 63
Query: 230 ----------------QWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLT 273
+ + + + + H+
Sbjct: 64 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123
Query: 274 EGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKR 333
+ ++ N + +V L G + S P E
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 183
Query: 334 VLASCSVDLSIRIWDTRVI--------NTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGG 385
+A + + D N + HT+ V +SW+ + +G
Sbjct: 184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 243
Query: 386 DDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
D + VW++ + + H + V +V W +T S G D I W++
Sbjct: 244 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSNIKFWNV 297
Score = 54.2 bits (128), Expect = 2e-08
Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 5/110 (4%)
Query: 312 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNV 371
+ GH ++ L S K L S + I WD I+T P+ H + +
Sbjct: 5 DQVRYGHNKAITALSSSADGKT-LFSADAEGHINSWD---ISTGISNRVFPDVHATMITG 60
Query: 372 ISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHP 421
I L DD + V SS A ++ +
Sbjct: 61 IKTTSKGDLFTVSWDD-HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA 109
Score = 38.8 bits (88), Expect = 0.002
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 401 GSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
GS H +T + + T S A+ I WD++
Sbjct: 2 GSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDIS 42
Score = 31.9 bits (70), Expect = 0.25
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 728 QKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ GH ++ L S K L S +
Sbjct: 5 DQVRYGHNKAITALSSSADGKT-LFSADAEGHINS 38
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 59.1 bits (141), Expect = 1e-09
Identities = 33/198 (16%), Positives = 58/198 (29%), Gaps = 25/198 (12%)
Query: 352 INTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFK--- 408
I T + AH +D+ +S VS DG + VWD + +
Sbjct: 4 IATANA----GKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF 57
Query: 409 ------HHTAPVTTVEWHPTESSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQ 462
HH + +E E A+ + + + E ++ ++
Sbjct: 58 VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET------KKVIFEKLD 111
Query: 463 LLFIHLGQKEIKELHWHPQ----LPGTIISTANSGFNIFRTISDLPSQLLFIHLGQKEIK 518
LL + + L W L +++T G + + L
Sbjct: 112 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL 171
Query: 519 ELHWHPQLPGTIISTANS 536
EL + P T A S
Sbjct: 172 ELQGTVESPMTPSQFATS 189
Score = 57.2 bits (136), Expect = 3e-09
Identities = 21/204 (10%), Positives = 59/204 (28%), Gaps = 39/204 (19%)
Query: 270 GHLTEGFAMDWSSTEPGVLATGDCKRNIHIW--------TPREAGAWQVDQKPLVGHTNS 321
H + F++ + + +W P++ K + H +
Sbjct: 12 AHDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 322 VEDLQWSPGEKRVLASCSVDLSIRIWD------TRVINTKSCMLTLPNAHTSDVNVISWN 375
++ ++ E ++A+ S + + T+ + + L + + W
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 376 RTEP-----LIVSGGDDGCIHVWDLRRFKK---------------GSSVATFKHHTAPVT 415
+ +V+ G ++W F +V + + T
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188
Query: 416 TVEWHPTESSTFASGGADDQIALW 439
+V+ A+G + + +
Sbjct: 189 SVDISE--RGLIATGFNNGTVQIS 210
Score = 53.3 bits (126), Expect = 6e-08
Identities = 43/298 (14%), Positives = 91/298 (30%), Gaps = 43/298 (14%)
Query: 175 HLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPR------EAGAWQVDQKPLGGHTNSAED 228
H+ A++ + E ++AT ++ + + ++D +S
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 229 LQWS----------------DLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHL 272
L+W T + + + S
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 273 TEGFAMDWSSTEPGVLATG--DCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPG 330
++D S G++ATG + I + Q ++ ++NS+ +++SP
Sbjct: 185 QFATSVDISER--GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242
Query: 331 EKRVLASCS--VDLSIRIWDTRVINTKSCM---------LTLPNAHTSDVNVISWNRTEP 379
+ + I +++T + AH+S V +S+N +
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302
Query: 380 LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTES---STFASGGADD 434
+ S G DG + WD++ + T H + E + A G D
Sbjct: 303 TLCSAGWDGKLRFWDVK---TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357
Score = 28.3 bits (61), Expect = 3.7
Identities = 5/30 (16%), Positives = 9/30 (30%), Gaps = 3/30 (10%)
Query: 733 GHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
H + + SCS D ++
Sbjct: 12 AHDADIFSVSACN---SFTVSCSGDGYLKV 38
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 56.4 bits (134), Expect = 4e-09
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 293 CKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVI 352
+ + G ++ D V H+ SV L WSP + +AS S D +I+IW+
Sbjct: 212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVA-- 268
Query: 353 NTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDL 395
T T+P + + T+ +VS +G I+ +
Sbjct: 269 -TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
Score = 52.2 bits (123), Expect = 1e-07
Identities = 23/274 (8%), Positives = 48/274 (17%), Gaps = 13/274 (4%)
Query: 168 PLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAE 227
++ H + S + + T + + G
Sbjct: 50 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDIS 109
Query: 228 DLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGV 287
S A+ + F + S
Sbjct: 110 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII------ 163
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
+ + +
Sbjct: 164 ----SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 219
Query: 348 DTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATF 407
D AH+ V ++W+ I S D I +W++ K ++
Sbjct: 220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 279
Query: 408 KHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
+ W S A+ I +
Sbjct: 280 TRIEDQQLGIIWTKQ---ALVSISANGFINFVNP 310
Score = 39.5 bits (90), Expect = 0.001
Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 5/80 (6%)
Query: 360 TLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEW 419
+LP V+ I ++ + + + H+ T +
Sbjct: 11 SLPRTARGTAVVLGNTPAGDKIQYCNGT-SVYTVPV---GSLTDTEIYTEHSHQTTVAKT 66
Query: 420 HPTESSTFASGGADDQIALW 439
P+ ASG + +W
Sbjct: 67 SPS-GYYCASGDVHGNVRIW 85
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 53.3 bits (126), Expect = 5e-08
Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 16/163 (9%)
Query: 280 WSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCS 339
+ + +G + +W P + L GHTN V LQ+ + S S
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDPE----TETCLHTLQGHTNRVYSLQFDG---IHVVSGS 194
Query: 340 VDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFK 399
+D SIR+WD N + + ++VSG D + +WD++ +
Sbjct: 195 LDTSIRVWDVETGNCIHTL------TGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ 248
Query: 400 KGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
++ H + VT ++++ + + D + LWDL
Sbjct: 249 CLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLK 288
Score = 45.2 bits (105), Expect = 2e-05
Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 10/76 (13%)
Query: 347 WDTRVINTKSCMLTLPNAHTSDVN-VISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVA 405
W L H V + + IVSG DD + VW G +
Sbjct: 1 WRR---GELKSPKVL-KGHDDHVITCLQFCGN--RIVSGSDDNTLKVWSA---VTGKCLR 51
Query: 406 TFKHHTAPVTTVEWHP 421
T HT V + +
Sbjct: 52 TLVGHTGGVWSSQMRD 67
Score = 42.9 bits (99), Expect = 1e-04
Identities = 23/126 (18%), Positives = 35/126 (27%), Gaps = 14/126 (11%)
Query: 315 LVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISW 374
L GH + V R + S S D ++++W T C+ TL HT V
Sbjct: 12 LKGHDDHVITC-LQFCGNR-IVSGSDDNTLKVWS---AVTGKCLRTL-VGHTGGVWSSQM 65
Query: 375 NRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADD 434
+ + +TV SG D
Sbjct: 66 --------RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 435 QIALWD 440
+ +WD
Sbjct: 118 TLRVWD 123
Score = 33.6 bits (75), Expect = 0.086
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 393 WDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
W K S K H V T + SG D+ + +W
Sbjct: 1 WRRGELK---SPKVLKGHDDHVITC-LQFC-GNRIVSGSDDNTLKVWSAV 45
Score = 30.6 bits (67), Expect = 0.68
Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 13/109 (11%)
Query: 666 STEPGVLATGDCKRNIHIWTPREAGAWSVYLYTNRF-----------GVLATGDCKRNIH 714
+ +L +G+ + IW + N+ + T +
Sbjct: 224 ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVK 283
Query: 715 IWTPREAGA-WQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+W + + G V ++ S K V A S + +
Sbjct: 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT-KLVCAVGSRNGTEET 331
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 51.8 bits (122), Expect = 2e-07
Identities = 16/161 (9%), Positives = 36/161 (22%), Gaps = 15/161 (9%)
Query: 288 LATGDCKRNIHIW---TPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSI 344
L + + + S + P + DL+
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP-RSMTSEAGEYDLND 251
Query: 345 RIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPL---IVSGGDDGCIHVWDLRRFKKG 401
+ IN + S + + S + G + +D++
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT---- 307
Query: 402 SSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+T + + T D +I + L
Sbjct: 308 ---RKVTEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLE 344
Score = 42.5 bits (98), Expect = 2e-04
Identities = 13/207 (6%), Positives = 34/207 (16%), Gaps = 14/207 (6%)
Query: 202 HIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQLAEHNKKRGKGPGIP 261
+ + + L + ++
Sbjct: 157 VMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV 216
Query: 262 TPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNI--HIWTPREAGAWQVDQKPLVGHT 319
F A ++ PL
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276
Query: 320 NSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEP 379
+ +D + +++ + +
Sbjct: 277 LIYSVPVHGE-FAAYYQGAPEKGVLLKYDVKTRKVT--------EVKNNLTDLRLSADRK 327
Query: 380 LIVSGGDDGCIHVWDLRRFKKGSSVAT 406
++ DDG I+ + L +K T
Sbjct: 328 TVMVRKDDGKIYTFPL---EKPEDERT 351
Score = 36.8 bits (83), Expect = 0.008
Identities = 35/350 (10%), Positives = 83/350 (23%), Gaps = 21/350 (6%)
Query: 417 VEWHPTESSTFASGGADDQIALWDLAVERDSEI--EQREAELKDLPSQLLFIHLGQKEIK 474
++ P + A + Q + D++ ++ R ++ + G +E
Sbjct: 8 EDFSPLDGDLIAFV-SRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 475 ELHWHPQLPGTIISTANSGFNIFRTISDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTA 534
L + G + N+F + + + + E+ G
Sbjct: 67 FLGIYDYRTGKAEKFEENLGNVF---AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 123
Query: 535 NSGFNIFRTISMSNLTSTEEDNERELEDDESEGSGDEDRRKDPVMNSYFIRHRGCINRVR 594
S + ++S+ + + D F +
Sbjct: 124 RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYA 183
Query: 595 TCQYGSTTLAGVWGEVGKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSG 654
+ D ++ F++ PG P P
Sbjct: 184 PAFDADSKNLYYLSYRSLDPSPDR----VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS 239
Query: 655 HLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWSVYLYTN--RFGVLATGDCKRN 712
+E D + + + P E+ + + K
Sbjct: 240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV 299
Query: 713 IHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
+ + V + + N++ DL+ S K + D
Sbjct: 300 LLKYD--------VKTRKVTEVKNNLTDLRLSADRKT-VMVRKDDGKIYT 340
Score = 32.5 bits (72), Expect = 0.18
Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 13/148 (8%)
Query: 276 FAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVL 335
FA D+S + ++A + I +V + ++ K
Sbjct: 6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV------PEPLRIRYVRRGGDTKVAF 58
Query: 336 ASCSVDL-SIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWD 394
+ + + I+D ++ + +V + +R V D I D
Sbjct: 59 IHGTREGDFLGIYD-----YRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD 113
Query: 395 LRRFKKGSSVATFKHHTAPVTTVEWHPT 422
L K + + T +
Sbjct: 114 LETGKPTVIERSREAMITDFTISDNSRF 141
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 51.4 bits (121), Expect = 2e-07
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Query: 347 WDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVAT 406
+ + + H ++++ I+ I+ G + ++++LR K A
Sbjct: 262 DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKL--VHAN 319
Query: 407 FKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
+ +V + + A+ D Q L L
Sbjct: 320 ILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEIL 352
Score = 51.0 bits (120), Expect = 3e-07
Identities = 41/317 (12%), Positives = 85/317 (26%), Gaps = 23/317 (7%)
Query: 315 LVGHTNSVED-LQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVIS 373
L GH SV LQ+ + + + D IR++D K +L L + H V +
Sbjct: 8 LRGHMTSVITCLQFED---NYVITGADDKMIRVYD---SINKKFLLQL-SGHDGGVWALK 60
Query: 374 WNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGAD 433
+ L+ D + H++ +G D
Sbjct: 61 YAHGGILVSGSTDRTVRVWDIKKGCCT---HVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
Query: 434 DQIALWDLAVER---DSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTA 490
+ + +W L E D E + P + + + G I+ +
Sbjct: 118 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG 177
Query: 491 NSGFNIF-------RTISDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIFRT 543
+ + + + L I+ + + T I +
Sbjct: 178 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 237
Query: 544 ISMSNLTSTEEDNERELEDDESEGSGDEDRRKDPVMNSYFIRHRGCINRVRTCQYGSTTL 603
+ + + G + F H ++ + T L
Sbjct: 238 TLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNIL 297
Query: 604 AGVWGEVGKVGIWDLKT 620
G + I++L++
Sbjct: 298 VS--GSENQFNIYNLRS 312
Score = 49.5 bits (116), Expect = 9e-07
Identities = 28/166 (16%), Positives = 46/166 (27%), Gaps = 10/166 (6%)
Query: 262 TPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNS 321
P + GH + E + TG + I ++ L GH
Sbjct: 2 VPQRTTLRGH--MTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ----LSGHDGG 55
Query: 322 VEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLI 381
V L+++ G V S + + + T I + I
Sbjct: 56 VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEG----HNSTVRCLDIVEYKNIKYI 111
Query: 382 VSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTF 427
V+G D +HVW L + + T E +P
Sbjct: 112 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157
Score = 49.1 bits (115), Expect = 1e-06
Identities = 33/399 (8%), Positives = 95/399 (23%), Gaps = 61/399 (15%)
Query: 365 HTSDV-NVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTE 423
H + V + + +++G DD I V+D + H V +++
Sbjct: 11 HMTSVITCLQFEDN--YVITGADDKMIRVYDS---INKKFLLQLSGHDGGVWALKYAH-- 63
Query: 424 SSTFASGGADDQIALWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLP 483
SG D + +W D+
Sbjct: 64 GGILVSGSTDRTVRVW------------------DIKKGCCTHVFEGHNSTVRCLDIVEY 105
Query: 484 GTIISTANSGFNIFRTISDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIFRT 543
I + + LP + G++ L +H
Sbjct: 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP------------------ 147
Query: 544 ISMSNLTSTEEDNERELEDDESEGSGDEDRRKDPVMNSYFIRHRGCINRVRTCQYGSTTL 603
+ + G+ D + + + C+ L
Sbjct: 148 EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLY----------IL 197
Query: 604 AGVWGEVGKVGIWDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMD 663
+G + + + + + + G+ +
Sbjct: 198 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLV 257
Query: 664 WSSTEPGVLATGDCKRNIHIWTPREAGAWSVYLYTNRFGVLATGDCKRNIHIWTPREAGA 723
++ + + + + Y + +++ + +I+ R
Sbjct: 258 SAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSE--NQFNIYNLRS--- 312
Query: 724 WQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRI 762
++ ++ + + + + K ++A+ D + +
Sbjct: 313 GKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFL 349
Score = 48.4 bits (113), Expect = 2e-06
Identities = 10/98 (10%), Positives = 27/98 (27%), Gaps = 5/98 (5%)
Query: 298 HIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSC 357
+ H ++ + +L S S + I++ R +
Sbjct: 260 AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR---SGKL 315
Query: 358 MLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDL 395
+ + +++ L+ + DG + L
Sbjct: 316 VHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEIL 352
Score = 36.8 bits (83), Expect = 0.009
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 271 HLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPG 330
H T A+ +L +G + +I+ R ++ ++ + + + +
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS---GKLVHANILKDADQIWSVNFKG- 334
Query: 331 EKRVLASCSVDLSIRIWD 348
K ++A+ D +
Sbjct: 335 -KTLVAAVEKDGQSFLEI 351
Score = 33.7 bits (75), Expect = 0.090
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 4/96 (4%)
Query: 704 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDRSNRIG 763
+ TG + I ++ L GH V L+++ G V S
Sbjct: 26 VITGADDKMIRVYDSINKKFLLQ----LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 81
Query: 764 ARRDMLYCFFVSLVHCIFVWLKYQLFVDVYYWAFVD 799
+ + F + + + D
Sbjct: 82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 49.0 bits (115), Expect = 1e-06
Identities = 20/161 (12%), Positives = 46/161 (28%), Gaps = 15/161 (9%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLV-----GHTNSVEDLQ-WSPGEKRVLASCSVD 341
+ TG + + G D H S+ +K+ A+ +
Sbjct: 170 VKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 229
Query: 342 LSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKG 401
D + T T + +P + G + + +DL++ K
Sbjct: 230 YGYLSVDLK---TGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLI 285
Query: 402 SSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
+ + V + + GG + +A+++
Sbjct: 286 KAA----NLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPD 321
Score = 45.1 bits (105), Expect = 2e-05
Identities = 9/156 (5%), Positives = 34/156 (21%), Gaps = 5/156 (3%)
Query: 287 VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRI 346
+ + N+H+ + + V + ++ +P + + I
Sbjct: 10 YMIVTNYPNNLHVV---DVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66
Query: 347 WDTRVINTKSC--MLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSV 404
D + ++P + + + + + + V
Sbjct: 67 IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126
Query: 405 ATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
+ + D + +
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG 162
Score = 41.6 bits (96), Expect = 2e-04
Identities = 23/243 (9%), Positives = 47/243 (19%), Gaps = 15/243 (6%)
Query: 380 LIVSGGDDGCIHVWDLRRFKKGSSVATFK-HHTAPVTTVEWHPTESSTFASGGADDQIAL 438
++ +HV D+ + + T P + + I
Sbjct: 10 YMIVTNYPNNLHVVDV---ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66
Query: 439 WDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIFR 498
DL + + + + P + +
Sbjct: 67 IDLD----------TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116
Query: 499 TISDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIFRTISMSNLTSTEEDNE- 557
+ P +F E K + P + A +++ +
Sbjct: 117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYT 176
Query: 558 RELEDDESEGSGDEDRRKDPVMNSYFIRHRGCINRVRTCQYGSTTLAGVWGEVGKVGIWD 617
L G RH + + D
Sbjct: 177 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236
Query: 618 LKT 620
LKT
Sbjct: 237 LKT 239
Score = 40.5 bits (93), Expect = 5e-04
Identities = 16/140 (11%), Positives = 41/140 (29%), Gaps = 13/140 (9%)
Query: 278 MDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLAS 337
+ + AT D + + + T SP +
Sbjct: 213 IARFKDDKQDPATADLLYGYLSV---DLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-IY 268
Query: 338 CSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRR 397
++ + +D + + + HT +++++ + GG + V++
Sbjct: 269 GVLN-RLAKYDLK---QRKLIKAANLDHT--YYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322
Query: 398 FKKGSSVATFKHHTAPVTTV 417
+K V K ++T
Sbjct: 323 LEK---VKNIKLPGGDMSTT 339
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 46.1 bits (108), Expect = 8e-06
Identities = 15/169 (8%), Positives = 36/169 (21%), Gaps = 11/169 (6%)
Query: 279 DWSSTEPGVLATGDCKRNIHIWTPREAGA---WQVDQKPLVGHT--NSVEDLQWSPGEKR 333
+ P T ++ A +D + ++ + P
Sbjct: 69 KHAQHVPSPYNTAFSADGKRLYVANITPAASVTVIDAVSKKMLSEIDTAACVLAYPAGDD 128
Query: 334 VLASCSVD-LSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWN--RTEPLIVSGGDDGCI 390
+ ++ + ++ D + N R + + G +
Sbjct: 129 RFTALCESGKALTVTLDAN-GKEAKRTMSDAFIDVDKDPAFVNASRYKGDYLFTTYGGNV 187
Query: 391 HVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALW 439
D K + + T W P + A
Sbjct: 188 RSADFSG-DKPAFGKPWSLLTDAERAEGWRPG-GMQQTAVQAKQNRYYV 234
Score = 31.1 bits (69), Expect = 0.51
Identities = 13/190 (6%), Positives = 36/190 (18%), Gaps = 27/190 (14%)
Query: 275 GFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGE-KR 333
+ + K + + G + + K
Sbjct: 119 CVLAYPAGDDRFTALCESGKA-LTVTLD-ANGKEAKRTMSDAFIDVDKDPAFVNASRYKG 176
Query: 334 VLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVW 393
+ ++R D + + T W + +
Sbjct: 177 DYLFTTYGGNVRSADFSG-DKPAFGKPWSL-LTDAERAEGWRPGGMQQTAVQAKQNRYYV 234
Query: 394 DLRRFKKGS---------------------SVATFKHHTAPVTTVEWHPTESSTFASGGA 432
+ + GS + P+ +++ + F A
Sbjct: 235 LMHKGTDGSHKDPGTQVWVYDLKSKQRVARWDLAQQK-VEPLVSIQVSEDDKPLFYGLTA 293
Query: 433 DDQIALWDLA 442
+ + D
Sbjct: 294 TSDLVVMDAR 303
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 42.9 bits (99), Expect = 9e-05
Identities = 22/156 (14%), Positives = 44/156 (28%), Gaps = 7/156 (4%)
Query: 287 VLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRI 346
V + IH+W GA + Q +V V+ + SP ++ + + +
Sbjct: 6 VYIASPESQQIHVWNLNHEGALTLTQ--VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63
Query: 347 WDTRVINTKSCMLTLPNAHTSDVNV--ISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSV 404
+ I LT ++ IS + + G + V
Sbjct: 64 YR---IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120
Query: 405 ATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
+ P + + D+I L+
Sbjct: 121 VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFT 156
Score = 42.1 bits (97), Expect = 2e-04
Identities = 12/102 (11%), Positives = 33/102 (32%), Gaps = 1/102 (0%)
Query: 378 EPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIA 437
+ + ++ + IHVW+L + + P + + + ++
Sbjct: 4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQV-QPMVVSPDKRYLYVGVRPEFRVL 62
Query: 438 LWDLAVERDSEIEQREAELKDLPSQLLFIHLGQKEIKELHWH 479
+ +A + + E+ L + + H GQ +
Sbjct: 63 AYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA 104
Score = 27.1 bits (58), Expect = 8.4
Identities = 10/103 (9%), Positives = 26/103 (25%), Gaps = 10/103 (9%)
Query: 261 PTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHT- 319
+ + + + A I +++ E G+ G
Sbjct: 218 TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS----VLSKEGFQP 273
Query: 320 --NSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLT 360
K ++A+ I +++ I + +L
Sbjct: 274 TETQPRGFNVDHSGKYLIAAGQKSHHISVYE---IVGEQGLLH 313
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 42.9 bits (99), Expect = 1e-04
Identities = 22/274 (8%), Positives = 59/274 (21%), Gaps = 13/274 (4%)
Query: 150 QLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREA 209
+ + R P + G + + V + P
Sbjct: 93 DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVD-LEGKAFKRMLDVPDCY 151
Query: 210 GAWQVDQKPLGGHTNSAEDLQW-SDLKTALQTVDDPFQLAEHNKKRGKGPGIPTPPLFSF 268
+ H + + + E +
Sbjct: 152 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW 211
Query: 269 SGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWS 328
+ + +D SS + L + W+ V + +++ +
Sbjct: 212 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD-----GWRPGGWQQVAYHRALDRIYLL 266
Query: 329 PGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDG 388
++ + + + D + T + H D +S + L D
Sbjct: 267 VDQRDEWRHKTASRFVVVLDAK---TGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDK 323
Query: 389 CIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPT 422
+++ D G + + +
Sbjct: 324 TLYIHDAE---SGEELRSVNQLGHGPQVITTADM 354
Score = 41.7 bits (96), Expect = 3e-04
Identities = 33/253 (13%), Positives = 57/253 (22%), Gaps = 8/253 (3%)
Query: 192 LATGDCKRNIHIWT-PREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDDPFQLAEH 250
T +I + PR L + Q+S +
Sbjct: 85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM 144
Query: 251 NKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQV 310
PT P F A TE T + A+
Sbjct: 145 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ 204
Query: 311 DQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVN 370
LV T + + Q +V+ + +
Sbjct: 205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY 264
Query: 371 VISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESST-FAS 429
++ R E + V D K G +A F+ + ++ E +A
Sbjct: 265 LLVDQRDE--WRHKTASRFVVVLDA---KTGERLAKFEMG-HEIDSINVSQDEKPLLYAL 318
Query: 430 GGADDQIALWDLA 442
D + + D
Sbjct: 319 STGDKTLYIHDAE 331
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 42.1 bits (97), Expect = 2e-04
Identities = 29/263 (11%), Positives = 60/263 (22%), Gaps = 18/263 (6%)
Query: 184 WSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLGGHTNSAEDLQWSDLKTALQTVDD 243
L D A D K L + + Q
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV---QPTRV 117
Query: 244 PFQLAEHNKKRGKGPGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPR 303
AE +R + +++ ++ + + G + I +
Sbjct: 118 ALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP-EAGTLVEDKPIQSWE 176
Query: 304 EAGAWQVDQKPLV----GHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCML 359
Q D + + + + + D T +
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE---TGEMAM 233
Query: 360 TLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEW 419
+ N + + +DL +K +S+ + +V
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDL---EKNASIKRVPLPHSY-YSVNV 287
Query: 420 HPTESSTFASGGADDQIALWDLA 442
+ ST GGA +A +D
Sbjct: 288 ST-DGSTVWLGGALGDLAAYDAE 309
Score = 40.6 bits (93), Expect = 6e-04
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 5/65 (7%)
Query: 380 LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAP--VTTVEWHPTESSTFASGGADDQIA 437
I++ + V D +K + A P +A+ + +
Sbjct: 3 YILAPARPDKLVVIDT---EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLV 59
Query: 438 LWDLA 442
DL
Sbjct: 60 KIDLV 64
Score = 38.2 bits (87), Expect = 0.003
Identities = 14/156 (8%), Positives = 39/156 (25%), Gaps = 11/156 (7%)
Query: 265 LFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVED 324
L ++ H + G T + D + ++ + +
Sbjct: 186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS 245
Query: 325 LQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSG 384
+P + R + +D + + +P ++ + + G
Sbjct: 246 TAVNPAKTRA---FGAYNVLESFDLE---KNASIKRVP--LPHSYYSVNVSTDGSTVWLG 297
Query: 385 GDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWH 420
G G + +D +K ++
Sbjct: 298 GALGDLAAYDAETLEK---KGQVDLPGNASMSLASV 330
Score = 35.6 bits (80), Expect = 0.020
Identities = 8/143 (5%), Positives = 30/143 (20%), Gaps = 3/143 (2%)
Query: 288 LATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIW 347
+ + + + + +PG + A+ + S+
Sbjct: 4 ILAPARPDKLVVIDT--EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 348 DTRVIN-TKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVAT 406
D L+ P + + + + + + ++
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 407 FKHHTAPVTTVEWHPTESSTFAS 429
+ + +A
Sbjct: 122 AETLSRRKAFEAPRQITMLAWAR 144
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 40.2 bits (92), Expect = 6e-04
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 382 VSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALWDL 441
++ + I V D+ AT + P P + + + + +++ D
Sbjct: 6 IANSESDNISVIDV---TSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDT 61
Query: 442 A 442
A
Sbjct: 62 A 62
Score = 36.8 bits (83), Expect = 0.009
Identities = 11/96 (11%), Positives = 26/96 (27%), Gaps = 1/96 (1%)
Query: 347 WDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVAT 406
VI+T + + + + I+ N D + + A
Sbjct: 180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR 239
Query: 407 FKHHTAPVTTVEWHPTESSTFASGGADDQIALWDLA 442
P + P + + + +++ D A
Sbjct: 240 IPVGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTA 274
Score = 32.9 bits (73), Expect = 0.13
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 316 VGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLP 362
+ + +P K+V + S ++ + DT T + T+
Sbjct: 240 IPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTA---TNTITATMA 283
Score = 29.8 bits (65), Expect = 1.3
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 337 SCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDL 395
+ S +I + D + T+P VIS + T+ + V+ + + D
Sbjct: 7 ANSESDNISVIDV---TSNKVTATIPVGSNPMGAVISPDGTK-VYVANAHSNDVSIIDT 61
Score = 29.5 bits (64), Expect = 1.7
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 3/34 (8%)
Query: 380 LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAP 413
+ V+ + V D + AT P
Sbjct: 258 VYVALSFCNTVSVIDT---ATNTITATMAVGKNP 288
Score = 27.9 bits (60), Expect = 5.5
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 320 NSVEDLQWSPGEKRVLASCSVDLSIRIWDT 349
++ SP +V + + + I DT
Sbjct: 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 36.1 bits (82), Expect = 0.013
Identities = 19/183 (10%), Positives = 37/183 (20%), Gaps = 19/183 (10%)
Query: 275 GFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRV 334
F + + L + A A V + S + Q + V
Sbjct: 167 CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV 226
Query: 335 LASCSVDLSIRIWDTRVINTKSCMLTLPN--------------AHTSDVNVISWNRTEPL 380
A S L I + A + + I E
Sbjct: 227 WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286
Query: 381 IVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPT-ESSTFASGGADDQIALW 439
+ + + S +A+ + + ++
Sbjct: 287 RSCLAAAENTSSVTASVGQT---SGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIY 342
Query: 440 DLA 442
D A
Sbjct: 343 DAA 345
Score = 35.7 bits (81), Expect = 0.017
Identities = 14/156 (8%), Positives = 39/156 (25%), Gaps = 12/156 (7%)
Query: 258 PGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVG 317
P + D + + A D + R+A ++ +V
Sbjct: 216 AAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNE-----SGRKADNFRSAGFQMVA 270
Query: 318 HTNSVEDLQWSPGEKRVLASCSVDLSIRIWDTRVINTKSCMLTLPNAHTSDVNVISWNRT 377
+ + + E + + + + N H SD + + +
Sbjct: 271 KLKNTDGIMILTVE-HSRSCLAAAENTSSVTAS---VGQTSGPISNGHDSDAIIAAQDGA 326
Query: 378 EPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAP 413
+ + ++D ++ + P
Sbjct: 327 SDNYANSAGTEVLDIYDAA---SDQDQSSVELDKGP 359
Score = 29.9 bits (66), Expect = 1.3
Identities = 9/74 (12%), Positives = 18/74 (24%), Gaps = 8/74 (10%)
Query: 376 RTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVT-------TVEWHPTESSTFA 428
R + + G W G ++ + T + A
Sbjct: 32 RRSHITLPAYFAGTTENWVSCA-GCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSA 90
Query: 429 SGGADDQIALWDLA 442
G D + ++D
Sbjct: 91 KGKRTDYVEVFDPV 104
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 36.3 bits (83), Expect = 0.014
Identities = 18/152 (11%), Positives = 37/152 (24%), Gaps = 12/152 (7%)
Query: 297 IHIWTPREAGAWQVDQKPLVGHTNSVEDLQWSPGEKRVLASCSVDLSIRIWDT---RVIN 353
I +W ++ + +K +A I D
Sbjct: 88 IDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK 145
Query: 354 TKSCM----LTLPNAHTSDVNVISWNRTEP-LIVSGGDDGCIHVWDLRRFKKGSSVATFK 408
+S V I + P IV+ + G I + D + T
Sbjct: 146 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN--NLKTTEI 203
Query: 409 HHTAPVTTVEWHPTESSTFASGGADDQIALWD 440
+ + + A +++ + D
Sbjct: 204 SAERFLHDGGLDGSHRYFITAANARNKLVVID 235
Score = 29.8 bits (66), Expect = 1.7
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 380 LIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASGGADDQIALW 439
V+ D G I + D ++ A G D ++ +
Sbjct: 34 FSVTLRDAGQIALIDGSTYEI---KTVLDTGYAVH-ISRLSA-SGRYLFVIGRDGKVNMI 88
Query: 440 DLAVERDSEI 449
DL ++ + +
Sbjct: 89 DLWMKEPTTV 98
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 34.9 bits (79), Expect = 0.034
Identities = 35/228 (15%), Positives = 63/228 (27%), Gaps = 13/228 (5%)
Query: 371 VISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAPVTTVEWHPTESSTFASG 430
+ + V+ D G I + D V A
Sbjct: 25 LNDLDLPNLFSVTLRDAGQIALVDG---DSKKIVKVIDTGYAV-HISRMSA-SGRYLLVI 79
Query: 431 GADDQIALWDLAVERDSEIEQREA--ELKDLPSQLLFIHLGQKEIKELHWHPQLPGTIIS 488
G D +I + DL + +++ + + E + + S + + I +W PQ
Sbjct: 80 GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 139
Query: 489 TANSGFNIFRTISDLPSQLLFIHLGQKEIKELHWHPQLPGTIISTANSGFNIFRTISMSN 548
T + + +Q I H HP+ + T + + N
Sbjct: 140 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV--LLVNYKDIDN 197
Query: 549 LTSTEEDNERELEDDESEGSGDEDRRKDPVMNSYFIRHRGCINRVRTC 596
LT T L D G D R + + ++ R
Sbjct: 198 LTVTSIGAAPFLAD----GGWDSSHRYFMTAANNSNKVAVIDSKDRRL 241
Score = 28.4 bits (62), Expect = 4.0
Identities = 26/160 (16%), Positives = 45/160 (28%), Gaps = 26/160 (16%)
Query: 258 PGIPTPPLFSFSGHLTEGFAMDWSSTEPGVLATGDCKRNIHIWTPREAGAWQVDQKPLVG 317
P P + H G S G ++ H AW+ + L G
Sbjct: 248 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY-----AWKKVAE-LQG 301
Query: 318 HTNSVEDLQWSPGEKRVLASC------SVDLSIRIWDTRVINTKSCMLTLPNAHTSD--- 368
++ P + + S+ ++D + N + LP A +D
Sbjct: 302 QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK--NLDAKYQVLPIAEWADLGE 359
Query: 369 ----VNVISWNR--TEPLIV---SGGDDGCIHVWDLRRFK 399
V +N+ E D + V D + K
Sbjct: 360 GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 399
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 28.3 bits (63), Expect = 3.8
Identities = 11/106 (10%), Positives = 28/106 (26%), Gaps = 18/106 (16%)
Query: 354 TKSCMLTLPNAHTSDVNVISWNRTEPLIVSGGDDGCIHVWDLRRFKKGSSVATFKHHTAP 413
+P + + + + I +G + V + + F+
Sbjct: 247 ESEFTRYIP-VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD-----LFEDKIEL 300
Query: 414 VTTVEWHP------------TESSTFASGGADDQIALWDLAVERDS 447
T+ P + + + D Q+ W++A
Sbjct: 301 RDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKH 346
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.424
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,188,307
Number of extensions: 150128
Number of successful extensions: 615
Number of sequences better than 10.0: 1
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 135
Length of query: 812
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 719
Effective length of database: 1,130,706
Effective search space: 812977614
Effective search space used: 812977614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.7 bits)