RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4512
(101 letters)
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C,
catalytic domain. The protein architecture and deduced
catalytic mechanism of PP2C phosphatases are similar to
the PP1, PP2A, PP2B family of protein Ser/Thr
phosphatases, with which PP2C shares no sequence
similarity.
Length = 252
Score = 40.4 bits (95), Expect = 3e-05
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 27/86 (31%)
Query: 11 VEDGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLAFDETYM 70
E D ++LA+DG++D + + ++ ++VR SKDP + A D
Sbjct: 193 TEKDDFLILASDGLWDVLSNQEVV-DIVRKHLSKDPKE-----------AAKRLIDLAL- 239
Query: 71 SPFAIQARANGISTQGGKPDDITVLL 96
G D+ITV++
Sbjct: 240 --------------ARGSKDNITVVV 251
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic
domain; The protein architecture and deduced catalytic
mechanism of PP2C phosphatases are similar to the PP1,
PP2A, PP2B family of protein Ser/Thr phosphatases, with
which PP2C shares no sequence similarity.
Length = 254
Score = 36.5 bits (85), Expect = 7e-04
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 27/93 (29%)
Query: 5 DTSQFQV-EDGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTL 63
D + ++ ED D ++LA+DG++D + + + + +D + A + +A
Sbjct: 185 DVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQE---AAQELVDLAL-- 239
Query: 64 AFDETYMSPFAIQARANGISTQGGKPDDITVLL 96
+ G D+ITV++
Sbjct: 240 ---------------------RRGSHDNITVVV 251
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal
transduction mechanisms].
Length = 262
Score = 36.6 bits (85), Expect = 8e-04
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 29/93 (31%)
Query: 5 DTSQFQVEDGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLA 64
D ++ ++E GD +LL +DG++D V D ++ ++++ + + I L
Sbjct: 186 DITELELEPGDFLLLCSDGLWDVVSDDEIV-DILKNSETPQ----EAADKLIEL------ 234
Query: 65 FDETYMSPFAIQARANGISTQGGKPDDITVLLA 97
+ +GG PD+ITV+L
Sbjct: 235 ------------------ALEGGGPDNITVVLV 249
>gnl|CDD|214624 smart00331, PP2C_SIG, Sigma factor PP2C-like phosphatases.
Length = 193
Score = 35.8 bits (83), Expect = 0.001
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 5 DTSQFQVEDGDVILLATDGVFDNVPDSLLLAELVRAQGS 43
D + +E GD++LL TDG+ + L L GS
Sbjct: 140 DVRELTLEPGDLLLLYTDGLTEARNPERLEELLEELLGS 178
>gnl|CDD|219343 pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This
family contains a number of bacterial stage II
sporulation E proteins (EC:3.1.3.16). These are required
for formation of a normal polar septum during
sporulation. The N-terminal region is hydrophobic and is
expected to contain up to 12 membrane-spanning segments.
Length = 192
Score = 31.1 bits (71), Expect = 0.047
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 19/94 (20%)
Query: 5 DTSQFQVEDGDVILLATDGVFDN-VPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTL 63
+T++F +E GD +LL TDG+ + PD L + L AL+ L
Sbjct: 114 ETAEFPLEPGDTLLLYTDGLTEARDPDGELFGLERLLALLAERHGLSPEELLDALLEDLL 173
Query: 64 AFDETYMSPFAIQARANGISTQGGKPDDITVLLA 97
G DDIT+L+
Sbjct: 174 RLGG------------------GELEDDITLLVL 189
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C. Protein phosphatase 2C is
a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 252
Score = 29.6 bits (67), Expect = 0.19
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 5 DTSQFQVEDGDV-ILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVAN 54
D + ++ + D ++LA+DG++D + D + ++VR++ S A
Sbjct: 190 DVTSHKITESDEFLILASDGLWDVLSDQ-EVVDIVRSELSD--GSPMEAAE 237
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional.
Length = 381
Score = 29.0 bits (65), Expect = 0.31
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 4 ADTSQFQVEDGDVILLATDGVFD 26
D + + D I+LA DGVF+
Sbjct: 199 PDVTHLTCQSNDFIILACDGVFE 221
>gnl|CDD|234038 TIGR02865, spore_II_E, stage II sporulation protein E. Stage II
sporulation protein E (SpoIIE) is a multiple membrane
spanning protein with two separable functions. It plays
a role in the switch to polar cell division during
sporulation. By means of it protein phosphatase
activity, located in the C-terminal region, it activates
sigma-F. All proteins that score above the trusted
cutoff to this model are found in endospore-forming
Gram-positive bacteria. Surprisingly, a sequence from
the Cyanobacterium-like (and presumably
non-spore-forming) photosynthesizer Heliobacillus
mobilis is homologous, and scores between the trusted
and noise cutoffs [Cellular processes, Sporulation and
germination].
Length = 764
Score = 27.7 bits (62), Expect = 0.88
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 25/94 (26%)
Query: 10 QVEDGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLAFDETY 69
++++GD+I++ +DGV + G K+ V + + R L +
Sbjct: 693 KLKNGDLIVMVSDGVLE---------------GEKE------VEGKVLWLVRKLK-ETNT 730
Query: 70 MSPFAIQAR--ANGISTQGGKP-DDITVLLAIVA 100
P I + GK DD+TV++A V
Sbjct: 731 NDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKVY 764
>gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 374
Score = 27.2 bits (61), Expect = 1.4
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 52 VANTIALMARTLAF-DETYMSPFAIQARANGISTQGGKP 89
A +AL+A + DE + F A AN + G KP
Sbjct: 60 AALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKP 98
>gnl|CDD|225618 COG3076, COG3076, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 135
Score = 26.7 bits (59), Expect = 1.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 2 ECADTSQFQVEDGDVILLATDGVFDNVPDSLLLAELVRAQ 41
E + + +VEDGD+++ D + + L AEL+ AQ
Sbjct: 56 EVTEAEELEVEDGDIVI-----CCDIISEVALNAELIDAQ 90
>gnl|CDD|222308 pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C
is a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 211
Score = 26.9 bits (60), Expect = 1.9
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 1 PECADTSQFQV---EDGDVILLATDGVFDNVPDSLLLAELVR 39
P+ + + + E GD + L TDG+ D++
Sbjct: 150 PDALEEFRIRRLTLEPGDALALMTDGLSDSLVTEEPFRPFFA 191
>gnl|CDD|225118 COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit
[Signal transduction mechanisms / Transcription].
Length = 367
Score = 26.6 bits (59), Expect = 2.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 5 DTSQFQVEDGDVILLATDGVFD 26
+ + Q+E GD+++L TDGV +
Sbjct: 287 EVASLQLEPGDLLVLYTDGVTE 308
>gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA
synthetase/aspartyl/glutamyl-tRNA amidotransferase
subunit C; Provisional.
Length = 706
Score = 26.5 bits (58), Expect = 2.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 9 FQVEDGDVILLATDGVFDNVPDSL 32
F EDGDVI++ D V +L
Sbjct: 399 FHAEDGDVIIMIADASCAIVLSAL 422
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only
papain-like lysosomal cysteine peptidase exhibiting
carboxymonopeptidase activity. It can also act as a
carboxydipeptidase, like cathepsin B, but has been
shown to preferentially cleave substrates through a
monopeptidyl carboxypeptidase pathway. The propeptide
region of cathepsin X, the shortest among papain-like
peptidases, is covalently attached to the active site
cysteine in the inactive form of the enzyme. Little is
known about the biological function of cathepsin X.
Some studies point to a role in early tumorigenesis. A
more recent study indicates that cathepsin X expression
is restricted to immune cells suggesting a role in
phagocytosis and the regulation of the immune response.
Length = 239
Score = 26.2 bits (58), Expect = 2.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 60 ARTLAFDETYMSPFAIQARANGISTQGGKP 89
AR A+ Y+S + A G S GG P
Sbjct: 47 ARKGAWPSVYLSVQVVIDCAGGGSCHGGDP 76
>gnl|CDD|226959 COG4594, FecB, ABC-type Fe3+-citrate transport system, periplasmic
component [Inorganic ion transport and metabolism].
Length = 310
Score = 25.5 bits (56), Expect = 5.8
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 29 PDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLAFDETYMSPFAIQARANGISTQGGK 88
PD L++A+ R + +L+ +A TIAL +R + E S F A+A G + K
Sbjct: 112 PD-LIIADSSRHKKVYK--ELKKIAPTIALKSRNEDYQENIDS-FKTIAKAVGKEKEMEK 167
>gnl|CDD|240264 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional.
Length = 452
Score = 25.3 bits (56), Expect = 6.4
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 17 ILLATDGVFDNVPDSLLLAELVRAQ---GSKDPMQLQLVANTIALMARTLAFDETYMSPF 73
L T G DN L+L +L R GSK M+ L A I++ T+ D++ ++P
Sbjct: 324 YDLVTGGT-DN---HLVLVDL-RPFGITGSK--MEKLLDAVNISVNKNTIPGDKSALNPS 376
Query: 74 AIQARANGISTQGGKPDDITV 94
++ ++T+G K D
Sbjct: 377 GVRLGTPALTTRGAKEKDFKF 397
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.371
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,073,450
Number of extensions: 426553
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 24
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)