RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4512
(101 letters)
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese,
phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A
2jft_A 2v06_A
Length = 234
Score = 37.2 bits (87), Expect = 3e-04
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 30/97 (30%)
Query: 4 ADTSQFQVEDGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTL 63
D GD +L+++DG+F + A +V A S DP R L
Sbjct: 168 PDVFGIDCGPGDRLLISSDGLFAAADE----ALIVDAATSPDPQVA----------VRRL 213
Query: 64 AFDETYMSPFAIQARANGISTQGGKPDDITVLLAIVA 100
++ AN G D+ TV++ +
Sbjct: 214 -----------VEV-AN----DAGGSDNTTVVVIDLG 234
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese
binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus
subtilis} PDB: 3t9q_A*
Length = 242
Score = 36.5 bits (85), Expect = 5e-04
Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 27/97 (27%)
Query: 5 DTSQFQVEDGDVILLATDGVFDNVPDS----LLLAELVRAQGSKDPMQLQLVANTIALMA 60
+ Q++ GD++++ +DG+F+ L + ++ + DP ++ LM
Sbjct: 144 EVVSEQLKAGDLLIMMSDGIFEGPKHVENHDLWMKRKMKGLKTNDPQEIAD-----LLME 198
Query: 61 RTLAFDETYMSPFAIQARANGISTQGGKPDDITVLLA 97
+ G DD+TV++
Sbjct: 199 EVIRT------------------RSGQIEDDMTVVVV 217
>3rnr_A Stage II sporulation E family protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Length = 211
Score = 35.7 bits (83), Expect = 9e-04
Identities = 8/50 (16%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 5 DTSQFQVEDGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVAN 54
+ +E G+ +L+ +DGV+ ++ + +A + + ++ A
Sbjct: 148 SEAPLPLEAGEGVLVVSDGVYRSLHED-RIAMALSRGSDARGILQEVEAQ 196
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family
phosphatase, hydrolase; 1.28A {Synechococcus elongatus}
PDB: 2j86_A 2y09_A 2xzv_A
Length = 240
Score = 35.3 bits (82), Expect = 0.001
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 30/96 (31%)
Query: 4 ADTSQFQVEDGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTL 63
D +E GD +LL +DG+ + + D + + + A L
Sbjct: 175 IDIQPIDLEPGDRLLLCSDGLTEELTD----DVISIYLSEPNVQKA----------AAAL 220
Query: 64 AFDETYMSPFAIQARANGISTQGGKPDDITVLLAIV 99
+ A A G D++TV++ V
Sbjct: 221 -----------VDA-AK----THGGRDNVTVVVISV 240
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural
genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus}
Length = 242
Score = 35.0 bits (81), Expect = 0.002
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 26/97 (26%)
Query: 5 DTSQFQVEDGDVILLATDGVFDNVPDSL----LLAELVRAQGSKDPMQLQLVANTIALMA 60
+F E G ++L +DG+ LA R G + P Q + L+
Sbjct: 147 RVLEFPAEPGLTVILVSDGIIGAGGRRGQPLEFLATGGRVAGPETPAQ-AIAD---ELLE 202
Query: 61 RTLAFDETYMSPFAIQARANGISTQGGKPDDITVLLA 97
L D G DD+TV++
Sbjct: 203 AALVAD------------------DGRAGDDMTVVVL 221
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling
protein; 2.65A {Streptococcus agalactiae}
Length = 250
Score = 34.9 bits (81), Expect = 0.002
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 29/94 (30%)
Query: 4 ADTSQFQVEDGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTL 63
D +E+GD +++ +DG+ + + ++ + L + T+ + L
Sbjct: 179 PDLGVHLLEEGDYLVVNSDGLTNMLSNADIATVLTQ-------------EKTLDDKNQDL 225
Query: 64 AFDETYMSPFAIQARANGISTQGGKPDDITVLLA 97
I AN G D+ITV L
Sbjct: 226 -----------ITL-AN----HRGGLDNITVALV 243
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases,
PSTP/PPP, structural genomics, PSI, protein structure
initiative; 1.95A {Mycobacterium tuberculosis} SCOP:
d.219.1.1 PDB: 2cm1_A
Length = 237
Score = 34.1 bits (79), Expect = 0.003
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 30/94 (31%)
Query: 4 ADTSQFQVEDGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTL 63
+ + GD LL +DG+ D V D ++ A + + A L
Sbjct: 170 PTLTMREARAGDRYLLCSDGLSDPVSD----ETILEALQIPEVAES----------AHRL 215
Query: 64 AFDETYMSPFAIQARANGISTQGGKPDDITVLLA 97
I+ A +GG PD++TV++A
Sbjct: 216 -----------IEL-AL----RGGGPDNVTVVVA 233
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein
structure initiative, NEW YORK structural research
consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 33.8 bits (77), Expect = 0.004
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 5 DTSQFQVEDGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMA 60
D + F GD I+ T G F + + A P + A + + A
Sbjct: 253 DVTTFFAYPGDDIVAGTAGAFAHFRSHAAI-AAAIALYPVSPETVLDAAKAMVVNA 307
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium,
sulfate structural genomics, PSI-2, protein structure
initiative; 1.90A {Toxoplasma gondii}
Length = 364
Score = 31.6 bits (71), Expect = 0.027
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 5 DTSQFQVEDGDVILLATDGVFDNV-PDSLLLAELVRAQGSKDPMQLQLVANTIALMA 60
D QF D++LLA DGV++ D + +L A+ + L+ VA + A
Sbjct: 260 DVRQFYALSSDLLLLACDGVYEPSGMDWAYVRDLTVAEMQRSKGDLEEVAARVMDYA 316
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 0.14
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 1 PECADTSQFQVED---GDVI-----LLATDGVFD 26
PEC VE GDV+ L+ +D + D
Sbjct: 25 PECKVYPPKIVERFSEGDVVCALCGLVLSDKLVD 58
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI,
protei structure initiative, NEW YORK SGX research
center for STRU genomics; 1.70A {Anopheles gambiae}
Length = 304
Score = 28.9 bits (65), Expect = 0.25
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 21/98 (21%)
Query: 5 DTSQFQVEDGD-VILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTL 63
D + V D ++LA DG+++ + + + V+ + +K M+L + L
Sbjct: 226 DIEKITVGPEDEFMVLACDGIWNFMTSE-QVVQFVQERINKPGMKLSKICE--ELFDH-- 280
Query: 64 AFDETYMSPFAIQARANGISTQGGKPDDITVLLAIVAL 101
A G D++T + IV
Sbjct: 281 -------------CLAPHTRGDGTGCDNMTAI--IVQF 303
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 28.8 bits (64), Expect = 0.26
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 16/89 (17%)
Query: 17 ILLATDGVFDNVPDSLL---------LAELVRAQGSKDPMQLQLVANTIALMARTLAFDE 67
++L + G+ + + L ++ + L VA ++ D
Sbjct: 271 LVLMSSGLCRALHEIFPGDASTGNRELVRMISEEFQNQ-STLGGVAQSVVHRIVQAHHDT 329
Query: 68 TYMSPFAIQARANGISTQGGKPDDITVLL 96
+Q S DD+T+L+
Sbjct: 330 ------YMQLVEEHRSVTFNSRDDVTLLI 352
>3eq2_A Probable two-component response regulator; adaptor sigmas,
signaling protein; 3.40A {Pseudomonas aeruginosa} PDB:
3f7a_A
Length = 394
Score = 28.7 bits (64), Expect = 0.29
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 5 DTSQFQVEDGDVILLATDGVFDNVPDS-------LLLAELVRAQGSKDPMQ 48
D ++ + L +DG+ D +P + L ++ A G+ D ++
Sbjct: 319 DDRVMELPPSFSLSLFSDGILDVLPGATLKEKEASLPEQVAAAGGTLDGLR 369
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, tructural genomics;
1.80A {Alicyclobacillus acidocaldarius subsp}
Length = 242
Score = 27.4 bits (60), Expect = 0.79
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 16 VILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLAFDETYMSPFAI 75
IL+ TDG + PD + A G +V N I ++ R E
Sbjct: 12 QILVITDGCSNIGPDPVEAARRAHRHG--------IVVNVIGIVGRG-DAGEQGYQEAHS 62
Query: 76 QARANGISTQGGKPDDITVLLAIVA 100
A A G + +P DI+ ++
Sbjct: 63 IADAGGGMCRIVQPADISATAQMMT 87
>3s6x_A Outer capsid protein sigma-1; triple beta-spiral, beta-barrel,
beta-spiral repeat, greek K trimer, viral attachment
protein; HET: SIA GAL BGC; 2.25A {Reovirus type 3} PDB:
3s6y_A* 3s6z_A* 1kke_A
Length = 325
Score = 27.1 bits (59), Expect = 0.92
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 5 DTSQFQVEDGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLA 64
+T QFQ+ + ++ L T VFD++ + E + P++L + ++ +
Sbjct: 91 NTDQFQIVNNNLTLKTT--VFDSINSRIGAIEQSYVASAVTPLRLNSSTKVLDMLIDSST 148
Query: 65 F 65
Sbjct: 149 L 149
>3f79_A Probable two-component response regulator; adaptor, signaling
protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A
Length = 255
Score = 26.9 bits (60), Expect = 1.3
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 34/98 (34%)
Query: 6 TSQFQVEDGDVILLATDGVFDNVPDSLL------LAELVRAQGSKDPMQLQLVANTIALM 59
++ + L +DG+ D +P + L L E V A G T+ +
Sbjct: 181 DRVMELPPSFSLSLFSDGILDVLPGATLKEKEASLPEQVAAAG-----------GTLDGL 229
Query: 60 ARTLAFDETYMSPFAIQARANGISTQGGKPDDITVLLA 97
+ + PDDI +L+
Sbjct: 230 RQVFGL-----------------ANLAEMPDDIALLVL 250
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation
factor 1; protein transport; HET: GTP; 1.60A {Homo
sapiens} SCOP: a.7.8.1
Length = 45
Score = 24.9 bits (54), Expect = 1.7
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 22 DGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMART 62
+ +F++ S +LA L++ S P L+ I M +
Sbjct: 1 NVIFEDEEKSKMLARLLK---SSHPEDLRAANKLIKEMVQE 38
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein
interaction,; HET: PEG; 1.75A {Moorella thermoacetica}
Length = 193
Score = 26.1 bits (58), Expect = 2.1
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 5 DTSQFQVEDGDVILLATDGVFDNVPDSLLLAEL 37
++ ++GD+ L+ +DG+ + LLA
Sbjct: 133 LIAKGSYQEGDLFLIHSDGIQEGAVPLALLANY 165
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
pathway, cell membr hydrolase, magnesium, manganese,
metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis
thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Length = 316
Score = 25.9 bits (57), Expect = 2.2
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 5 DTSQFQVEDGD-VILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTL 63
+ + + D ++LA+DGV+D + D E+ R + + VA +L+A
Sbjct: 211 EVTAVKRVKEDDCLILASDGVWDVMTDE-EACEMAR-KRILLWHKKNAVAGGASLLADER 268
Query: 64 AFDETYMSPFAIQARANGISTQGGKPDDITVLLAIVAL 101
+ + + + ++ Q G D+I+V+ +V L
Sbjct: 269 RKEGKDPAAMSAAEYLSKLAIQRGSKDNISVV--VVDL 304
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester,
structural genomi montreal-kingston bacterial
structural genomics initiative; 1.90A {Escherichia
coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Length = 531
Score = 25.8 bits (57), Expect = 3.2
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 11 VEDGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANT 55
+ D + + G +L+ A + + ++ P L +++ T
Sbjct: 25 IPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPT 69
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport;
2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Length = 140
Score = 25.2 bits (55), Expect = 3.6
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 22 DGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMAR 61
+ +F++ S +LA L++ S P L+ I M +
Sbjct: 1 NVIFEDEEKSKMLARLLK---SSHPEDLRAANKLIKEMVQ 37
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized,
gamma EAR-; clathrin-adaptor, GAT domain, helical
paper-CLIP, three-helix bundle; 2.80A {Homo sapiens}
SCOP: a.7.8.1
Length = 158
Score = 24.9 bits (54), Expect = 4.4
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 22 DGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMAR 61
+ +F++ S +LA L++ S P L+ I M +
Sbjct: 10 NVIFEDEEKSKMLARLLK---SSHPEDLRAANKLIKEMVQ 46
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain,
PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C
protein phosphatase; HET: A8S; 1.80A {Arabidopsis
thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B*
Length = 337
Score = 25.2 bits (55), Expect = 4.8
Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 11/98 (11%)
Query: 5 DTSQFQVEDGD-VILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTL 63
+ + D ++LA+DG++D + + + E+ R + +
Sbjct: 240 EVTFMPRSREDECLILASDGLWDVMNNQ-EVCEIARRRILMWHKKNGAPPLAERGKGIDP 298
Query: 64 AFDETYMSPFAIQARANGISTQGGKPDDITVLLAIVAL 101
A + ++ A G S D+I+++ ++ L
Sbjct: 299 AC-QAAADYLSMLALQKG-SK-----DNISII--VIDL 327
>1chk_A Chitosanase, endochitosanase; anti-fungal protein, hydrolase,
O-glycosyl, hydrolase (O-Gly; 2.40A {Streptomyces SP}
SCOP: d.2.1.7
Length = 238
Score = 25.0 bits (54), Expect = 5.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 60 ARTLAFDETYMSPFAIQARANGISTQG 86
A+ D Y P QA+A+G+ G
Sbjct: 113 AQNDERDRVYFDPAVSQAKADGLRALG 139
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor
antagonist, phosphatase serine kinase, ATPase, unknown
function; 2.60A {Mycobacterium tuberculosis}
Length = 399
Score = 25.1 bits (55), Expect = 5.7
Identities = 20/95 (21%), Positives = 27/95 (28%), Gaps = 15/95 (15%)
Query: 6 TSQFQVEDGDVILLATDGVFDNVPDSLL---LAELVRAQGSKDPMQLQLVANTIALMART 62
+ GD IL TDG+ + P L AE S V + A
Sbjct: 172 VRSEVLNIGDAILFYTDGLIER-PGRPLEASTAEFADLAASIASGSGGFVLDAPARPIDR 230
Query: 63 LAFDETYMSPFAIQARANGISTQGGKPDDITVLLA 97
L + G DD+T+L
Sbjct: 231 LC-----------SDTLELLLRSTGYNDDVTLLAM 254
>1qgi_A Protein (chitosanase); hydrolase, chitosan degradation; HET: GCS
NAG; 1.60A {Bacillus circulans} SCOP: d.2.1.7 PDB:
2d05_A
Length = 259
Score = 24.7 bits (53), Expect = 5.8
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 65 FDETYMSPFAIQARANGISTQGGK 88
F Y+ QAR G ++
Sbjct: 144 FYNVYIRYSVEQARQRGFTSAVTI 167
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics,
protein structure initiative; 2.04A {Toxoplasma gondii}
Length = 324
Score = 24.6 bits (54), Expect = 6.5
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 5 DTSQFQVEDGD-VILLATDGVFD 26
D +V V++LATDG++D
Sbjct: 248 DVRVVRVTPQHRVMILATDGLWD 270
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 24.6 bits (53), Expect = 6.6
Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 16/92 (17%)
Query: 12 EDGDVILLATDGVFDNVPDSLL-------LAELVRAQGSKDPMQLQLVANTIALMARTLA 64
++L ++G++ + + +A ++ + +K Q L A A++ R
Sbjct: 280 GVTGFLVLMSEGLYKALEAAHGPGQANQEIAAMIDTEFAK---QTSLDAVAQAVVDRVKR 336
Query: 65 FDETYMSPFAIQARANGISTQGGKPDDITVLL 96
+ +AR + +D+T+L+
Sbjct: 337 IHSDTFASGGERAR------FCPRHEDMTLLV 362
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct
genomics, joint center for structural genomics, JCSG;
HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Length = 377
Score = 24.8 bits (55), Expect = 6.8
Identities = 14/50 (28%), Positives = 16/50 (32%), Gaps = 8/50 (16%)
Query: 51 LVAN-TIALMARTLAF-----DETYMSPFAIQARANGISTQGGKPD--DI 92
VAN T+ LMA M F A G +P DI
Sbjct: 58 TVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAIWCGLEPYFIDI 107
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted
catalysis, dehydrogenase phosphatase, hydrolase; 2.38A
{Homo sapiens} PDB: 3qht_A 1l2n_A
Length = 389
Score = 24.5 bits (53), Expect = 7.9
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 5 DTSQFQVEDGDV--ILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMA 60
+T + ++ D ++L TDG+ V + + V DP A+ + A
Sbjct: 308 ETKRIKLHHADDSFLVLTTDGINFMVNSQ-EICDFVNQ--CHDP---NEAAHAVTEQA 359
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate
biosynthesis pathway, isomera; 1.69A {Mytilus edulis}
SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Length = 295
Score = 24.1 bits (53), Expect = 9.9
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 7/34 (20%)
Query: 57 ALMARTLAFDETYMSPFAIQARANGISTQGGKPD 90
A + + F + S +S Q G D
Sbjct: 32 ARIVQEAGFKGIWGSGL-------SVSAQLGVRD 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.371
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,482,059
Number of extensions: 77448
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 49
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)