RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4512
         (101 letters)



>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase
           pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 235

 Score = 30.2 bits (67), Expect = 0.026
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 30/92 (32%)

Query: 6   TSQFQVEDGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLAF 65
            +  +   GD  LL +DG+ D V D      ++ A    +  +    A+ +  +A     
Sbjct: 170 LTMREARAGDRYLLCSDGLSDPVSDE----TILEALQIPEVAE---SAHRLIELAL---- 218

Query: 66  DETYMSPFAIQARANGISTQGGKPDDITVLLA 97
                              +GG PD++TV++A
Sbjct: 219 -------------------RGGGPDNVTVVVA 231


>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase
           2C, catalytic domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 295

 Score = 26.5 bits (57), Expect = 0.52
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 25/85 (29%)

Query: 12  EDGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANTIALMARTLAFDETYMS 71
           ED   I+LA DG++D + +   L + VR++       L+ V N +               
Sbjct: 228 EDDQFIILACDGIWDVMGNE-ELCDFVRSRLEVTD-DLEKVCNEVVDTCL---------- 275

Query: 72  PFAIQARANGISTQGGKPDDITVLL 96
                          G  D+++V+L
Sbjct: 276 -------------YKGSRDNMSVIL 287


>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal
          domain {Escherichia coli [TaxId: 562]}
          Length = 273

 Score = 25.8 bits (56), Expect = 1.1
 Identities = 7/45 (15%), Positives = 19/45 (42%)

Query: 11 VEDGDVILLATDGVFDNVPDSLLLAELVRAQGSKDPMQLQLVANT 55
          + D   + +   G       +L+ A   + + ++ P  L +++ T
Sbjct: 22 IPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPT 66


>d2if6a1 d.3.1.21 (A:19-200) Hypothetical protein YiiX
          {Escherichia coli [TaxId: 562]}
          Length = 182

 Score = 24.7 bits (53), Expect = 2.5
 Identities = 4/20 (20%), Positives = 8/20 (40%)

Query: 9  FQVEDGDVILLATDGVFDNV 28
          +Q + GD+I   +       
Sbjct: 1  WQPQTGDIIFQISRSSQSKA 20


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.371 

Gapped
Lambda     K      H
   0.267   0.0645    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 329,346
Number of extensions: 11876
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 13
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)