Query psy4514
Match_columns 64
No_of_seqs 114 out of 1081
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:07:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 99.9 3.6E-26 7.7E-31 158.5 4.8 61 1-62 39-99 (663)
2 PTZ00009 heat shock 70 kDa pro 99.8 2.8E-20 6E-25 133.1 7.0 62 1-63 7-68 (653)
3 PTZ00400 DnaK-type molecular c 99.8 6.3E-20 1.4E-24 131.6 7.0 62 1-63 44-106 (663)
4 PRK13410 molecular chaperone D 99.8 8.4E-20 1.8E-24 131.2 7.0 62 1-63 5-67 (668)
5 PRK13411 molecular chaperone D 99.8 9.8E-20 2.1E-24 130.4 6.9 62 1-63 5-67 (653)
6 PTZ00186 heat shock 70 kDa pre 99.8 9.4E-20 2E-24 130.8 6.3 61 1-62 30-90 (657)
7 PRK00290 dnaK molecular chaper 99.8 1.1E-19 2.4E-24 129.3 6.4 61 1-62 5-66 (627)
8 PLN03184 chloroplast Hsp70; Pr 99.8 1.5E-19 3.2E-24 129.9 6.6 62 1-63 42-104 (673)
9 CHL00094 dnaK heat shock prote 99.8 1.8E-19 3.8E-24 128.3 6.8 62 1-63 5-67 (621)
10 TIGR02350 prok_dnaK chaperone 99.8 1.9E-19 4.2E-24 127.1 6.6 61 1-62 3-64 (595)
11 TIGR01991 HscA Fe-S protein as 99.8 1.7E-19 3.6E-24 128.1 6.3 61 1-62 2-63 (599)
12 PRK05183 hscA chaperone protei 99.8 2.4E-19 5.3E-24 127.7 6.2 61 1-62 22-82 (616)
13 COG0443 DnaK Molecular chapero 99.8 4.6E-19 9.9E-24 125.9 6.8 63 1-63 8-71 (579)
14 PF00012 HSP70: Hsp70 protein; 99.7 2E-18 4.4E-23 120.7 5.6 62 1-63 2-63 (602)
15 KOG0101|consensus 99.7 4.2E-18 9.1E-23 121.7 5.1 61 1-62 10-70 (620)
16 KOG0102|consensus 99.7 6.6E-18 1.4E-22 119.5 5.7 61 1-62 30-91 (640)
17 KOG0104|consensus 99.7 4.8E-17 1E-21 118.1 4.0 63 1-63 25-87 (902)
18 PRK11678 putative chaperone; P 99.7 1.3E-16 2.7E-21 110.9 5.8 60 1-61 3-103 (450)
19 PRK01433 hscA chaperone protei 99.6 3.1E-16 6.8E-21 111.7 6.0 49 1-50 22-70 (595)
20 KOG0103|consensus 99.6 2E-16 4.3E-21 113.9 3.8 63 1-64 4-66 (727)
21 PRK13929 rod-share determining 99.0 8.9E-10 1.9E-14 73.8 5.2 52 1-62 7-61 (335)
22 TIGR00904 mreB cell shape dete 98.8 1.3E-08 2.8E-13 67.8 5.7 50 1-60 5-61 (333)
23 PRK13928 rod shape-determining 98.7 3.4E-08 7.3E-13 66.0 5.5 51 1-61 6-59 (336)
24 PRK13930 rod shape-determining 98.6 1.8E-07 4E-12 61.9 5.7 50 1-60 11-63 (335)
25 PRK13927 rod shape-determining 98.5 2.8E-07 6.2E-12 61.2 5.7 51 1-61 8-61 (334)
26 COG1077 MreB Actin-like ATPase 98.3 1.6E-06 3.5E-11 59.1 5.4 52 1-62 9-65 (342)
27 PF06723 MreB_Mbl: MreB/Mbl pr 98.2 1.4E-06 2.9E-11 59.1 2.8 51 1-61 4-57 (326)
28 PF00370 FGGY_N: FGGY family o 95.3 0.018 4E-07 36.6 2.6 18 1-18 3-20 (245)
29 cd00012 ACTIN Actin; An ubiqui 94.0 0.11 2.3E-06 35.1 4.1 54 1-54 2-56 (371)
30 TIGR00241 CoA_E_activ CoA-subs 93.9 0.059 1.3E-06 34.8 2.6 18 1-18 3-20 (248)
31 PRK10331 L-fuculokinase; Provi 93.2 0.062 1.3E-06 37.5 1.9 18 1-18 5-22 (470)
32 PRK15027 xylulokinase; Provisi 93.2 0.078 1.7E-06 37.2 2.4 18 1-18 3-20 (484)
33 TIGR02628 fuculo_kin_coli L-fu 92.9 0.099 2.1E-06 36.5 2.6 18 1-18 4-21 (465)
34 TIGR01314 gntK_FGGY gluconate 92.8 0.099 2.1E-06 36.9 2.5 18 1-18 3-20 (505)
35 TIGR01315 5C_CHO_kinase FGGY-f 92.3 0.13 2.8E-06 36.8 2.6 18 1-18 3-20 (541)
36 PTZ00294 glycerol kinase-like 92.3 0.1 2.2E-06 36.8 2.1 18 1-18 5-22 (504)
37 PRK10939 autoinducer-2 (AI-2) 92.2 0.11 2.3E-06 36.9 2.1 18 1-18 6-23 (520)
38 COG1070 XylB Sugar (pentulose 92.1 0.18 3.8E-06 35.8 3.1 18 1-18 7-24 (502)
39 PRK04123 ribulokinase; Provisi 92.0 0.13 2.9E-06 36.5 2.4 16 1-16 6-21 (548)
40 TIGR01311 glycerol_kin glycero 92.0 0.14 3.1E-06 35.9 2.5 18 1-18 4-21 (493)
41 TIGR01234 L-ribulokinase L-rib 91.7 0.12 2.7E-06 36.7 2.0 16 1-16 4-19 (536)
42 smart00732 YqgFc Likely ribonu 91.7 0.16 3.6E-06 27.8 2.1 18 1-18 4-21 (99)
43 PRK00047 glpK glycerol kinase; 91.6 0.14 3E-06 36.1 2.0 18 1-18 8-25 (498)
44 TIGR02261 benz_CoA_red_D benzo 91.5 0.27 5.9E-06 32.8 3.3 24 1-24 4-28 (262)
45 PLN02295 glycerol kinase 91.2 0.2 4.3E-06 35.5 2.5 18 1-18 3-20 (512)
46 TIGR01312 XylB D-xylulose kina 90.6 0.28 6.1E-06 34.0 2.8 18 1-18 1-18 (481)
47 TIGR03192 benz_CoA_bzdQ benzoy 90.2 0.23 4.9E-06 33.7 2.0 18 1-18 35-52 (293)
48 TIGR02627 rhamnulo_kin rhamnul 89.9 0.19 4.1E-06 35.0 1.5 17 1-17 1-17 (454)
49 PLN00130 succinate dehydrogena 89.7 0.026 5.7E-07 36.2 -2.6 18 1-18 60-77 (213)
50 smart00268 ACTIN Actin. ACTIN 88.9 0.54 1.2E-05 31.7 3.1 44 1-53 4-56 (373)
51 PLN02669 xylulokinase 88.9 0.39 8.4E-06 34.7 2.5 18 1-18 11-28 (556)
52 PTZ00280 Actin-related protein 88.9 0.56 1.2E-05 32.4 3.2 53 1-53 7-63 (414)
53 PRK13321 pantothenate kinase; 87.7 0.49 1.1E-05 30.8 2.2 18 1-18 3-20 (256)
54 PRK13317 pantothenate kinase; 87.3 0.79 1.7E-05 30.5 3.1 18 1-18 5-22 (277)
55 PRK13318 pantothenate kinase; 87.2 0.56 1.2E-05 30.5 2.3 18 1-18 3-20 (258)
56 PF14450 FtsA: Cell division p 86.1 0.72 1.6E-05 26.7 2.2 18 1-18 2-19 (120)
57 smart00842 FtsA Cell division 85.8 1.2 2.5E-05 27.5 3.1 24 1-25 2-28 (187)
58 PF06277 EutA: Ethanolamine ut 84.4 2.6 5.7E-05 30.5 4.6 14 1-14 6-19 (473)
59 PTZ00452 actin; Provisional 84.2 1.4 2.9E-05 30.3 3.1 52 1-52 8-60 (375)
60 PTZ00281 actin; Provisional 84.1 1.7 3.6E-05 29.8 3.5 52 1-52 9-61 (376)
61 TIGR02259 benz_CoA_red_A benzo 84.0 0.83 1.8E-05 32.6 2.0 18 1-18 5-22 (432)
62 TIGR03286 methan_mark_15 putat 83.9 0.77 1.7E-05 32.5 1.8 18 1-18 147-164 (404)
63 COG1924 Activator of 2-hydroxy 83.6 1.2 2.7E-05 31.4 2.7 18 1-18 138-155 (396)
64 PTZ00004 actin-2; Provisional 81.9 1.6 3.5E-05 29.8 2.8 52 1-52 9-61 (378)
65 PTZ00466 actin-like protein; P 81.7 2.1 4.6E-05 29.4 3.3 53 1-53 15-68 (380)
66 PF00349 Hexokinase_1: Hexokin 81.3 1.3 2.9E-05 28.3 2.1 16 1-16 66-81 (206)
67 PRK10719 eutA reactivating fac 80.9 4.2 9.2E-05 29.4 4.6 14 1-14 9-22 (475)
68 PF01548 DEDD_Tnp_IS110: Trans 80.2 3 6.4E-05 24.3 3.2 18 1-18 2-19 (144)
69 TIGR00671 baf pantothenate kin 79.9 3.4 7.3E-05 26.9 3.6 18 1-18 2-19 (243)
70 PRK00292 glk glucokinase; Prov 78.0 1.9 4.2E-05 28.5 2.1 16 1-16 5-20 (316)
71 PRK13326 pantothenate kinase; 76.8 2.3 5.1E-05 28.1 2.2 18 1-18 9-26 (262)
72 PF14574 DUF4445: Domain of un 76.6 2.9 6.4E-05 29.6 2.8 43 1-54 4-46 (412)
73 KOG2517|consensus 75.5 2.2 4.8E-05 31.2 1.9 16 1-16 9-24 (516)
74 PRK12408 glucokinase; Provisio 74.1 1.7 3.6E-05 29.4 1.0 17 1-17 19-35 (336)
75 PF01869 BcrAD_BadFG: BadF/Bad 74.1 4.5 9.8E-05 26.1 3.0 18 1-18 1-18 (271)
76 PF13941 MutL: MutL protein 73.0 4.1 8.9E-05 29.3 2.8 24 2-26 4-29 (457)
77 TIGR01174 ftsA cell division p 72.4 5.4 0.00012 27.0 3.2 25 1-25 3-29 (371)
78 COG1521 Pantothenate kinase ty 71.0 6.8 0.00015 26.1 3.3 18 1-18 3-20 (251)
79 PRK14101 bifunctional glucokin 68.6 3 6.6E-05 30.5 1.4 18 1-18 21-38 (638)
80 TIGR01175 pilM type IV pilus a 68.6 6.9 0.00015 26.0 3.0 23 1-23 6-29 (348)
81 TIGR00250 RNAse_H_YqgF RNAse H 68.2 5.6 0.00012 23.6 2.3 18 1-18 1-18 (130)
82 PF03652 UPF0081: Uncharacteri 68.1 5.4 0.00012 23.8 2.2 28 1-28 4-35 (135)
83 PRK09472 ftsA cell division pr 66.3 8.1 0.00018 26.9 3.1 24 1-25 11-37 (420)
84 PRK13320 pantothenate kinase; 66.2 5.8 0.00013 25.9 2.2 18 1-18 5-22 (244)
85 PRK15080 ethanolamine utilizat 65.5 5.2 0.00011 26.2 1.9 16 1-16 27-42 (267)
86 PLN02914 hexokinase 64.9 2.7 5.9E-05 30.4 0.6 51 1-51 98-149 (490)
87 PRK13331 pantothenate kinase; 64.4 6.6 0.00014 26.0 2.3 18 1-18 10-27 (251)
88 PRK13311 N-acetyl-D-glucosamin 63.6 6.2 0.00014 25.4 2.0 18 1-18 3-20 (256)
89 cd00529 RuvC_resolvase Hollida 63.5 12 0.00025 22.7 3.1 16 1-16 3-18 (154)
90 PF03309 Pan_kinase: Type III 63.5 6.6 0.00014 24.7 2.1 18 1-18 2-19 (206)
91 PLN02362 hexokinase 63.3 3.3 7.1E-05 30.1 0.7 16 1-16 98-113 (509)
92 TIGR00749 glk glucokinase, pro 63.2 7.3 0.00016 25.9 2.3 18 1-18 1-18 (316)
93 COG5277 Actin and related prot 63.0 9.6 0.00021 27.2 3.0 55 1-55 9-65 (444)
94 PF05378 Hydant_A_N: Hydantoin 62.8 8.2 0.00018 24.0 2.4 18 1-18 2-19 (176)
95 TIGR03739 PRTRC_D PRTRC system 62.1 27 0.00059 23.3 4.9 53 2-54 1-68 (320)
96 COG4820 EutJ Ethanolamine util 61.0 9.3 0.0002 25.5 2.4 17 1-17 32-48 (277)
97 TIGR03123 one_C_unchar_1 proba 60.9 14 0.00029 25.4 3.3 18 1-18 1-18 (318)
98 PRK13324 pantothenate kinase; 59.8 8.8 0.00019 25.4 2.2 18 1-18 3-20 (258)
99 PRK00109 Holliday junction res 59.4 9.1 0.0002 22.9 2.1 27 1-27 7-37 (138)
100 TIGR00555 panK_eukar pantothen 57.7 9.6 0.00021 25.6 2.1 18 1-18 3-20 (279)
101 PRK09557 fructokinase; Reviewe 57.0 9.4 0.0002 25.0 2.0 18 1-18 3-20 (301)
102 TIGR01319 glmL_fam conserved h 56.8 10 0.00022 27.5 2.2 32 3-37 1-32 (463)
103 PLN02405 hexokinase 55.6 4.7 0.0001 29.2 0.4 53 1-53 98-151 (497)
104 PF11104 PilM_2: Type IV pilus 54.9 5.7 0.00012 26.7 0.7 16 2-17 1-16 (340)
105 PTZ00288 glucokinase 1; Provis 54.4 10 0.00022 26.8 1.9 17 1-17 29-45 (405)
106 COG5026 Hexokinase [Carbohydra 54.3 11 0.00024 27.3 2.1 16 1-16 78-93 (466)
107 PTZ00107 hexokinase; Provision 53.9 10 0.00022 27.2 1.9 16 1-16 77-92 (464)
108 TIGR00744 ROK_glcA_fam ROK fam 53.1 14 0.00031 24.2 2.4 17 1-17 1-17 (318)
109 TIGR02529 EutJ ethanolamine ut 53.1 9.9 0.00021 24.5 1.6 15 2-16 1-15 (239)
110 PRK13310 N-acetyl-D-glucosamin 51.8 13 0.00028 24.3 2.0 18 1-18 3-20 (303)
111 COG1940 NagC Transcriptional r 51.5 13 0.00027 24.5 1.9 18 1-18 9-26 (314)
112 PF14097 SpoVAE: Stage V sporu 48.1 19 0.00042 22.9 2.3 30 31-60 51-83 (180)
113 PRK13322 pantothenate kinase; 48.0 17 0.00036 23.8 2.1 16 2-17 4-19 (246)
114 PF06406 StbA: StbA protein; 47.1 21 0.00047 23.9 2.5 18 1-18 3-20 (318)
115 COG0816 Predicted endonuclease 46.6 19 0.0004 22.0 2.0 18 1-18 5-22 (141)
116 PRK09698 D-allose kinase; Prov 46.6 17 0.00037 23.7 1.9 18 1-18 7-24 (302)
117 COG1069 AraB Ribulose kinase [ 46.6 15 0.00033 27.1 1.8 18 1-18 6-23 (544)
118 COG2410 Predicted nuclease (RN 45.6 55 0.0012 20.9 4.0 38 1-40 4-49 (178)
119 PF00022 Actin: Actin; InterP 44.9 22 0.00048 23.9 2.3 43 1-52 7-54 (393)
120 PLN02596 hexokinase-like 44.8 18 0.00038 26.3 1.9 16 1-16 99-114 (490)
121 PF12565 DUF3747: Protein of u 44.2 73 0.0016 20.4 4.5 36 2-38 104-139 (181)
122 COG3251 Uncharacterized protei 43.9 26 0.00055 19.2 2.0 36 20-55 12-48 (71)
123 KOG0676|consensus 43.9 21 0.00046 25.1 2.2 53 1-53 10-63 (372)
124 COG0849 ftsA Cell division ATP 43.7 32 0.0007 24.5 3.1 25 1-25 9-35 (418)
125 PF01968 Hydantoinase_A: Hydan 42.3 24 0.00052 23.5 2.2 20 1-21 80-99 (290)
126 COG0554 GlpK Glycerol kinase [ 42.1 20 0.00044 26.3 1.9 18 1-18 8-25 (499)
127 PF00480 ROK: ROK family; Int 41.7 24 0.00051 21.0 1.9 17 2-18 1-17 (179)
128 COG4020 Uncharacterized protei 41.4 31 0.00067 23.7 2.6 23 1-23 6-28 (332)
129 COG1924 Activator of 2-hydroxy 40.2 42 0.00091 24.0 3.1 26 2-27 233-258 (396)
130 PF01385 OrfB_IS605: Probable 40.1 14 0.00031 22.6 0.8 18 1-18 127-144 (227)
131 TIGR03123 one_C_unchar_1 proba 39.2 31 0.00066 23.7 2.3 22 1-23 131-152 (318)
132 COG0145 HyuA N-methylhydantoin 38.5 34 0.00073 25.9 2.6 25 1-26 281-305 (674)
133 TIGR03286 methan_mark_15 putat 37.5 56 0.0012 23.3 3.5 26 2-27 245-270 (404)
134 TIGR03281 methan_mark_12 putat 36.6 31 0.00068 24.0 2.1 19 1-19 2-20 (326)
135 PRK00976 hypothetical protein; 36.3 52 0.0011 22.8 3.1 18 1-18 4-21 (326)
136 KOG2912|consensus 36.3 11 0.00024 26.6 -0.1 11 2-12 106-116 (419)
137 COG1548 Predicted transcriptio 35.9 22 0.00049 24.4 1.3 17 1-18 6-22 (330)
138 PRK05082 N-acetylmannosamine k 34.5 34 0.00074 22.2 2.0 18 1-18 4-21 (291)
139 COG4819 EutA Ethanolamine util 34.2 31 0.00067 24.7 1.8 14 1-14 8-21 (473)
140 PRK13917 plasmid segregation p 33.6 1.2E+02 0.0026 20.6 4.5 15 1-15 5-19 (344)
141 PRK13329 pantothenate kinase; 32.4 34 0.00073 22.4 1.7 15 2-16 5-19 (249)
142 PF08735 DUF1786: Putative pyr 31.7 94 0.002 20.9 3.7 33 1-34 170-202 (254)
143 cd02964 TryX_like_family Trypa 30.8 88 0.0019 17.7 3.1 33 28-60 95-127 (132)
144 PF04848 Pox_A22: Poxvirus A22 30.4 85 0.0018 19.2 3.1 17 1-17 4-20 (143)
145 PRK13328 pantothenate kinase; 29.9 49 0.0011 21.7 2.1 17 2-18 5-21 (255)
146 PF08787 Alginate_lyase2: Algi 28.9 60 0.0013 21.0 2.4 30 2-32 160-189 (236)
147 KOG1369|consensus 28.9 46 0.001 24.3 2.0 16 1-16 89-104 (474)
148 PF02075 RuvC: Crossover junct 27.7 52 0.0011 19.8 1.8 17 1-17 2-18 (149)
149 TIGR01865 cas_Csn1 CRISPR-asso 27.4 49 0.0011 25.4 2.0 18 1-18 4-21 (805)
150 COG4972 PilM Tfp pilus assembl 27.1 80 0.0017 22.3 2.8 16 1-16 13-28 (354)
151 PF07318 DUF1464: Protein of u 26.6 59 0.0013 22.7 2.1 17 2-18 1-18 (343)
152 PRK00039 ruvC Holliday junctio 26.3 51 0.0011 20.3 1.6 16 1-16 5-20 (164)
153 PF04312 DUF460: Protein of un 24.8 1.2E+02 0.0026 18.6 3.0 20 1-20 35-54 (138)
154 TIGR03285 methan_mark_14 putat 24.7 32 0.00068 24.7 0.5 8 1-8 196-203 (445)
155 COG2143 Thioredoxin-related pr 24.6 60 0.0013 20.7 1.7 21 28-48 111-131 (182)
156 PHA02278 thioredoxin-like prot 24.4 78 0.0017 17.7 2.1 23 27-49 67-92 (103)
157 PF09887 DUF2114: Uncharacteri 23.9 34 0.00073 24.6 0.5 8 1-8 199-206 (448)
158 PF05035 DGOK: 2-keto-3-deoxy- 23.8 98 0.0021 20.9 2.7 29 4-32 1-30 (287)
159 COG3734 DgoK 2-keto-3-deoxy-ga 23.1 1.2E+02 0.0026 21.0 3.0 27 1-29 8-34 (306)
160 PRK13327 pantothenate kinase; 22.9 55 0.0012 21.5 1.4 17 2-18 5-21 (242)
161 PF02685 Glucokinase: Glucokin 22.5 68 0.0015 21.8 1.8 17 2-18 2-18 (316)
162 PRK03011 butyrate kinase; Prov 22.4 68 0.0015 22.2 1.8 17 2-18 6-22 (358)
163 TIGR03706 exo_poly_only exopol 20.8 1.2E+02 0.0027 20.0 2.7 24 2-26 4-29 (300)
164 TIGR01295 PedC_BrcD bacterioci 20.7 1.1E+02 0.0023 17.6 2.2 17 32-48 90-109 (122)
165 PF03237 Terminase_6: Terminas 20.6 1.1E+02 0.0023 19.7 2.4 26 1-26 229-260 (384)
166 KOG2531|consensus 20.3 95 0.0021 23.0 2.2 18 1-18 12-29 (545)
No 1
>KOG0100|consensus
Probab=99.92 E-value=3.6e-26 Score=158.46 Aligned_cols=61 Identities=28% Similarity=0.337 Sum_probs=59.8
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCcc
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQ 62 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~ 62 (64)
||||||||||||+++++| .+||+.|++|+|+|||+|+|++++||+|++||+|+..||+||+
T Consensus 39 igIdLGTTYsCVgV~kNg-rvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTi 99 (663)
T KOG0100|consen 39 IGIDLGTTYSCVGVYKNG-RVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTI 99 (663)
T ss_pred EEEecCCceeeEEEEeCC-eEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccce
Confidence 699999999999999999 9999999999999999999999999999999999999999997
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.82 E-value=2.8e-20 Score=133.10 Aligned_cols=62 Identities=26% Similarity=0.284 Sum_probs=59.4
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCccC
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQG 63 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~~ 63 (64)
|||||||||||||++++| +++||+|++|+|+|||+|+|.+++|++|+.|++++.+||++|+.
T Consensus 7 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~ 68 (653)
T PTZ00009 7 IGIDLGTTYSCVGVWKNE-NVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVF 68 (653)
T ss_pred EEEEeCcccEEEEEEeCC-ceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEh
Confidence 699999999999999999 89999999999999999999988999999999999999999874
No 3
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.81 E-value=6.3e-20 Score=131.56 Aligned_cols=62 Identities=31% Similarity=0.335 Sum_probs=58.3
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec-CCceEEchhHHhhhhcCCCCccC
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGNSGTDICDKLIGCWTPVITQG 63 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~-~~~r~vG~~Ak~~~~~nP~nt~~ 63 (64)
|||||||||||||++++| +++|++|++|+|+|||+|+|. +++++||+.|++++..||++|+.
T Consensus 44 iGIDlGTt~s~va~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~ 106 (663)
T PTZ00400 44 VGIDLGTTNSCVAIMEGS-QPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVF 106 (663)
T ss_pred EEEEECcccEEEEEEeCC-eeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceeh
Confidence 699999999999999988 899999999999999999997 46999999999999999999874
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.80 E-value=8.4e-20 Score=131.18 Aligned_cols=62 Identities=26% Similarity=0.286 Sum_probs=58.2
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec-CCceEEchhHHhhhhcCCCCccC
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGNSGTDICDKLIGCWTPVITQG 63 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~-~~~r~vG~~Ak~~~~~nP~nt~~ 63 (64)
|||||||||||||++++| .+++++|++|+|+|||+|+|. +++++||+.|++++..||++|+.
T Consensus 5 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~ 67 (668)
T PRK13410 5 VGIDLGTTNSVVAVMEGG-KPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFY 67 (668)
T ss_pred EEEEeCCCcEEEEEEECC-eEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceeh
Confidence 699999999999999999 788999999999999999996 57999999999999999999874
No 5
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.80 E-value=9.8e-20 Score=130.36 Aligned_cols=62 Identities=27% Similarity=0.290 Sum_probs=58.0
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC-CceEEchhHHhhhhcCCCCccC
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GNSGTDICDKLIGCWTPVITQG 63 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~-~~r~vG~~Ak~~~~~nP~nt~~ 63 (64)
|||||||||||||++++| .+++|+|++|+|+|||+|+|.+ ++++||+.|++++..||++|+.
T Consensus 5 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~ 67 (653)
T PRK13411 5 IGIDLGTTNSCVAVLEGG-KPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVY 67 (653)
T ss_pred EEEEeCcccEEEEEEECC-EEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchH
Confidence 699999999999999999 7789999999999999999964 6999999999999999999863
No 6
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.80 E-value=9.4e-20 Score=130.82 Aligned_cols=61 Identities=28% Similarity=0.339 Sum_probs=58.6
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCcc
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQ 62 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~ 62 (64)
|||||||||||||++++| ++++++|..|+|+|||+|+|.+++++||+.|++++..||++|+
T Consensus 30 iGIDLGTTnS~vA~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti 90 (657)
T PTZ00186 30 IGVDLGTTYSCVATMDGD-KARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTF 90 (657)
T ss_pred EEEEeCcCeEEEEEEeCC-ceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHH
Confidence 699999999999999998 8899999999999999999999999999999999999999986
No 7
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.80 E-value=1.1e-19 Score=129.26 Aligned_cols=61 Identities=30% Similarity=0.353 Sum_probs=57.8
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec-CCceEEchhHHhhhhcCCCCcc
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGNSGTDICDKLIGCWTPVITQ 62 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~-~~~r~vG~~Ak~~~~~nP~nt~ 62 (64)
|||||||||||||++++| .+++++|++|+|+|||+|+|. ++++++|+.|++++..||++|+
T Consensus 5 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i 66 (627)
T PRK00290 5 IGIDLGTTNSCVAVMEGG-EPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTI 66 (627)
T ss_pred EEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhH
Confidence 699999999999999999 789999999999999999996 6899999999999999999986
No 8
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.79 E-value=1.5e-19 Score=129.93 Aligned_cols=62 Identities=29% Similarity=0.337 Sum_probs=58.0
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec-CCceEEchhHHhhhhcCCCCccC
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGNSGTDICDKLIGCWTPVITQG 63 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~-~~~r~vG~~Ak~~~~~nP~nt~~ 63 (64)
|||||||||||||++++| .+++++|++|+|+|||+|+|. ++++++|+.|++++..||++|+.
T Consensus 42 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~ 104 (673)
T PLN03184 42 VGIDLGTTNSAVAAMEGG-KPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFF 104 (673)
T ss_pred EEEEeCcCcEEEEEEECC-eEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhH
Confidence 699999999999999999 789999999999999999996 46899999999999999999873
No 9
>CHL00094 dnaK heat shock protein 70
Probab=99.79 E-value=1.8e-19 Score=128.28 Aligned_cols=62 Identities=29% Similarity=0.329 Sum_probs=58.1
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC-CceEEchhHHhhhhcCCCCccC
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GNSGTDICDKLIGCWTPVITQG 63 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~-~~r~vG~~Ak~~~~~nP~nt~~ 63 (64)
|||||||||||||++++| .++|++|++|+|+|||+|+|.+ +++++|+.|++++..||++|+.
T Consensus 5 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~ 67 (621)
T CHL00094 5 VGIDLGTTNSVVAVMEGG-KPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFY 67 (621)
T ss_pred EEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceeh
Confidence 699999999999999999 7899999999999999999964 6899999999999999999874
No 10
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.79 E-value=1.9e-19 Score=127.15 Aligned_cols=61 Identities=31% Similarity=0.354 Sum_probs=57.4
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC-CceEEchhHHhhhhcCCCCcc
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GNSGTDICDKLIGCWTPVITQ 62 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~-~~r~vG~~Ak~~~~~nP~nt~ 62 (64)
|||||||||||||++++| .+++++|++|+|+|||+|+|.+ +++++|+.|++++..||++|+
T Consensus 3 iGIDlGtt~s~va~~~~g-~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i 64 (595)
T TIGR02350 3 IGIDLGTTNSCVAVMEGG-EPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTI 64 (595)
T ss_pred EEEEeCcccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhh
Confidence 699999999999999999 7889999999999999999974 599999999999999999986
No 11
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.79 E-value=1.7e-19 Score=128.12 Aligned_cols=61 Identities=25% Similarity=0.260 Sum_probs=57.6
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC-CceEEchhHHhhhhcCCCCcc
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GNSGTDICDKLIGCWTPVITQ 62 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~-~~r~vG~~Ak~~~~~nP~nt~ 62 (64)
|||||||||||||++++| ++++++|+.|+|.|||+|+|.+ ++++||+.|++++..||++|+
T Consensus 2 iGIDlGTtns~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti 63 (599)
T TIGR01991 2 VGIDLGTTNSLVASVRSG-VPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTI 63 (599)
T ss_pred EEEEEccccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhH
Confidence 699999999999999999 8899999999999999999974 589999999999999999986
No 12
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.78 E-value=2.4e-19 Score=127.68 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=58.2
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCcc
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQ 62 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~ 62 (64)
|||||||||||||++++| .+++++|++|+|++||+|+|.++++++|+.|++++..||++|+
T Consensus 22 iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti 82 (616)
T PRK05183 22 VGIDLGTTNSLVATVRSG-QAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTI 82 (616)
T ss_pred EEEEeccccEEEEEEECC-EEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhH
Confidence 699999999999999999 7899999999999999999988889999999999999999986
No 13
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.6e-19 Score=125.93 Aligned_cols=63 Identities=29% Similarity=0.276 Sum_probs=57.6
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCC-ceEEchhHHhhhhcCCCCccC
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-NSGTDICDKLIGCWTPVITQG 63 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~-~r~vG~~Ak~~~~~nP~nt~~ 63 (64)
|||||||||||||+++++..++++.|.+|+|.|||+|+|..+ ++++|+.|++++..||+||+.
T Consensus 8 iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~ 71 (579)
T COG0443 8 IGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIF 71 (579)
T ss_pred EEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEE
Confidence 699999999999999977357999999999999999999754 699999999999999999863
No 14
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.74 E-value=2e-18 Score=120.67 Aligned_cols=62 Identities=35% Similarity=0.392 Sum_probs=54.9
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCccC
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQG 63 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~~ 63 (64)
|||||||+||+||++++| .++++.|+.|+|++||+|+|.++++++|..|+.++..+|++++.
T Consensus 2 iGID~Gt~~~~va~~~~~-~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~ 63 (602)
T PF00012_consen 2 IGIDLGTTNSKVAVFKNG-KPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIY 63 (602)
T ss_dssp EEEEE-SSEEEEEEEETT-EEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEE
T ss_pred EEEEeccCCEEEEEEEec-cccccccccccccccceeeEeeecccCCcchhhhcccccccccc
Confidence 699999999999999998 89999999999999999999988999999999999999998863
No 15
>KOG0101|consensus
Probab=99.73 E-value=4.2e-18 Score=121.68 Aligned_cols=61 Identities=28% Similarity=0.379 Sum_probs=59.0
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCcc
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQ 62 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~ 62 (64)
||||||||+|||+++.++ .++++.|++|+|+|||+|+|.+.++++|.+|+.+..+||.||+
T Consensus 10 iGIdlGtT~s~v~v~~~~-~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv 70 (620)
T KOG0101|consen 10 IGIDLGTTYSCVGVYQSG-KVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTV 70 (620)
T ss_pred eeEeccCccceeeeEcCC-cceeeeccccCccccceeeecccccchhhhhhhhhhcCCccee
Confidence 699999999999999988 8999999999999999999999999999999999999999985
No 16
>KOG0102|consensus
Probab=99.72 E-value=6.6e-18 Score=119.47 Aligned_cols=61 Identities=30% Similarity=0.346 Sum_probs=57.8
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec-CCceEEchhHHhhhhcCCCCcc
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGNSGTDICDKLIGCWTPVITQ 62 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~-~~~r~vG~~Ak~~~~~nP~nt~ 62 (64)
|||||||||||++++.++ .+.++.|.+|.|.|||+|+|. ++++|+|..||+|+..||+||+
T Consensus 30 igidlgttnS~va~meg~-~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntf 91 (640)
T KOG0102|consen 30 IGIDLGTTNSCVAVMEGK-KPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTF 91 (640)
T ss_pred eeEeeeccceeEEEEeCC-CceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceE
Confidence 699999999999999888 678999999999999999995 6799999999999999999997
No 17
>KOG0104|consensus
Probab=99.66 E-value=4.8e-17 Score=118.11 Aligned_cols=63 Identities=56% Similarity=0.810 Sum_probs=60.4
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCccC
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQG 63 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~~ 63 (64)
++||||++|.+||++++|.|++|++|.+++|++|++|+|.+++|++|++|..++.++|.++.+
T Consensus 25 msVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~ 87 (902)
T KOG0104|consen 25 MSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYR 87 (902)
T ss_pred eeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999988754
No 18
>PRK11678 putative chaperone; Provisional
Probab=99.66 E-value=1.3e-16 Score=110.88 Aligned_cols=60 Identities=12% Similarity=0.054 Sum_probs=55.3
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEec----------------------------------------
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH---------------------------------------- 40 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~---------------------------------------- 40 (64)
+|||||||||+||++++| +++++++++|++.+||+|+|.
T Consensus 3 iGID~GTtNs~va~~~~~-~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 3 IGFDYGTANCSVAVMRDG-KPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred EEEecCccceeeEEeeCC-ceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 699999999999999988 789999999999999999993
Q ss_pred -CCceEEchhHHhhhhcCCCCc
Q psy4514 41 -KGNSGTDICDKLIGCWTPVIT 61 (64)
Q Consensus 41 -~~~r~vG~~Ak~~~~~nP~nt 61 (64)
+++.++|..|+++...+|+++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~ 103 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEV 103 (450)
T ss_pred cccccchhHHHHHhhccCCCCc
Confidence 456789999999999999887
No 19
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.64 E-value=3.1e-16 Score=111.72 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=46.3
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhH
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICD 50 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~A 50 (64)
|||||||||||||++.+| +++|++|++|+|+|||+|+|.++++++|+.|
T Consensus 22 iGIDlGTT~S~va~~~~~-~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A 70 (595)
T PRK01433 22 VGIDFGTTNSLIAIATNR-KVKVIKSIDDKELIPTTIDFTSNNFTIGNNK 70 (595)
T ss_pred EEEEcCcccEEEEEEeCC-eeEEEECCCCCeecCeEEEEcCCCEEECchh
Confidence 699999999999999888 8999999999999999999988889999886
No 20
>KOG0103|consensus
Probab=99.63 E-value=2e-16 Score=113.87 Aligned_cols=63 Identities=27% Similarity=0.318 Sum_probs=61.1
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhhhcCCCCccCC
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVITQGQ 64 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~nt~~~ 64 (64)
+|||||..||.+|+.+.+ .+|+|.|+.|+|.||++|+|..+.|++|.+|+++..+|++||+++
T Consensus 4 vG~D~Gn~nc~iavAr~~-gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~ 66 (727)
T KOG0103|consen 4 VGFDLGNENCYIAVARQG-GIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSN 66 (727)
T ss_pred eeeeccccceeeeeeccC-CceeeeeccccccCcceeeeccccceeeeccccceeecccccchh
Confidence 599999999999999999 899999999999999999999999999999999999999999974
No 21
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=98.98 E-value=8.9e-10 Score=73.81 Aligned_cols=52 Identities=27% Similarity=0.254 Sum_probs=41.1
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCC-c--eEEchhHHhhhhcCCCCcc
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-N--SGTDICDKLIGCWTPVITQ 62 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~-~--r~vG~~Ak~~~~~nP~nt~ 62 (64)
+||||||+|+++ +.++++ ++.|+ ||+|+|+.+ . ..||+.|+++..++|.++.
T Consensus 7 ~giDlGt~~~~i--~~~~~~--~~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~ 61 (335)
T PRK13929 7 IGIDLGTANILV--YSKNKG--IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIV 61 (335)
T ss_pred EEEEcccccEEE--EECCCc--EEecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEE
Confidence 699999999985 556633 46663 999999743 2 4799999999999998764
No 22
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=98.80 E-value=1.3e-08 Score=67.85 Aligned_cols=50 Identities=22% Similarity=0.231 Sum_probs=38.0
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCC-----c--eEEchhHHhhhhcCCCC
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----N--SGTDICDKLIGCWTPVI 60 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~-----~--r~vG~~Ak~~~~~nP~n 60 (64)
|||||||+|++++....| .++ ..||+|+|.++ . .++|+.|++++...|.+
T Consensus 5 ~giDlGt~~s~i~~~~~~---~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~ 61 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG---IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGN 61 (333)
T ss_pred eEEecCcceEEEEECCCC---EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCC
Confidence 699999999999885433 243 27999999732 3 56999999987666654
No 23
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=98.71 E-value=3.4e-08 Score=65.98 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=39.5
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC-C-ce-EEchhHHhhhhcCCCCc
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-G-NS-GTDICDKLIGCWTPVIT 61 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~-~-~r-~vG~~Ak~~~~~nP~nt 61 (64)
+||||||+|++++....+ .++. +||+|+|.. + .. .+|+.|++++...|.+.
T Consensus 6 ~gIDlGt~~~~i~~~~~~---~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~ 59 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKG---IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNI 59 (336)
T ss_pred eEEEcccccEEEEECCCC---EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCE
Confidence 699999999999886333 4554 599999974 2 33 69999999987777654
No 24
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=98.56 E-value=1.8e-07 Score=61.94 Aligned_cols=50 Identities=24% Similarity=0.233 Sum_probs=37.7
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC---CceEEchhHHhhhhcCCCC
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK---GNSGTDICDKLIGCWTPVI 60 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~---~~r~vG~~Ak~~~~~nP~n 60 (64)
+||||||+++++++...+ .++ + +||+|+|.+ +..++|++|+++...+|.+
T Consensus 11 vgiDlGt~~t~i~~~~~~---~~~-~------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~ 63 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG---IVL-N------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGN 63 (335)
T ss_pred eEEEcCCCcEEEEECCCC---EEE-e------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCC
Confidence 699999999999986333 233 2 599999964 2458999999988766644
No 25
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=98.52 E-value=2.8e-07 Score=61.19 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=37.6
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCC-c--eEEchhHHhhhhcCCCCc
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-N--SGTDICDKLIGCWTPVIT 61 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~-~--r~vG~~Ak~~~~~nP~nt 61 (64)
|||||||++++++.. |... ++ .+||+|+|... + .++|+.|+++...+|.++
T Consensus 8 igIDlGt~~~~i~~~--~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~ 61 (334)
T PRK13927 8 LGIDLGTANTLVYVK--GKGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNI 61 (334)
T ss_pred eEEEcCcceEEEEEC--CCcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCE
Confidence 699999999998553 3232 33 27999999643 2 389999999987776553
No 26
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=98.31 E-value=1.6e-06 Score=59.06 Aligned_cols=52 Identities=27% Similarity=0.283 Sum_probs=41.4
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC--C--ce-EEchhHHhhhhcCCCCcc
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK--G--NS-GTDICDKLIGCWTPVITQ 62 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~--~--~r-~vG~~Ak~~~~~nP~nt~ 62 (64)
+||||||.|..|.+- + + -|++|+ ||+|++.. + .. .+|..||++.-..|.|-.
T Consensus 9 iGIDLGTanTlV~~k--~-k-gIVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~ 65 (342)
T COG1077 9 IGIDLGTANTLVYVK--G-K-GIVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIV 65 (342)
T ss_pred ceeeecccceEEEEc--C-c-eEEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCce
Confidence 699999999998775 3 2 377776 99999965 3 22 499999999989998754
No 27
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=98.18 E-value=1.4e-06 Score=59.13 Aligned_cols=51 Identities=27% Similarity=0.391 Sum_probs=35.7
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCC--ce-EEchhHHhhhhcCCCCc
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG--NS-GTDICDKLIGCWTPVIT 61 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~--~r-~vG~~Ak~~~~~nP~nt 61 (64)
+||||||.|..|.. .+ + .++.++ ||+|+++.+ +. .+|++|+.+.-.+|.+-
T Consensus 4 igIDLGT~~t~i~~--~~-~-Giv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i 57 (326)
T PF06723_consen 4 IGIDLGTSNTRIYV--KG-K-GIVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI 57 (326)
T ss_dssp EEEEE-SSEEEEEE--TT-T-EEEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE
T ss_pred eEEecCcccEEEEE--CC-C-CEEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc
Confidence 69999999999755 33 2 366665 999999743 33 49999999988888763
No 28
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=95.25 E-value=0.018 Score=36.63 Aligned_cols=18 Identities=17% Similarity=0.492 Sum_probs=16.1
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+|||++++++++..
T Consensus 3 lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 3 LGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEECSSEEEEEEEETT
T ss_pred EEEEEcccceEEEEEeCC
Confidence 599999999999999854
No 29
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=94.04 E-value=0.11 Score=35.07 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=34.2
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEE-ecCCceEEchhHHhhh
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVA-FHKGNSGTDICDKLIG 54 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~-f~~~~r~vG~~Ak~~~ 54 (64)
|.||+||.++++++..+..+.-++++--++...+.... ......++|+.|+...
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~ 56 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKR 56 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCC
Confidence 47999999999998765534456666555543332111 1134667999887654
No 30
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=93.92 E-value=0.059 Score=34.77 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=16.1
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+||++++++++++|
T Consensus 3 lGIDiGtts~K~vl~d~g 20 (248)
T TIGR00241 3 LGIDSGSTTTKMVLMEDG 20 (248)
T ss_pred EEEEcChhheEEEEEcCC
Confidence 599999999999999854
No 31
>PRK10331 L-fuculokinase; Provisional
Probab=93.19 E-value=0.062 Score=37.54 Aligned_cols=18 Identities=17% Similarity=0.291 Sum_probs=15.9
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+||+++++++++..
T Consensus 5 lgID~GTt~~Ka~l~d~~ 22 (470)
T PRK10331 5 LVLDCGATNVRAIAVDRQ 22 (470)
T ss_pred EEEecCCCceEEEEEcCC
Confidence 589999999999999744
No 32
>PRK15027 xylulokinase; Provisional
Probab=93.18 E-value=0.078 Score=37.18 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=16.2
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+||+++++++++..
T Consensus 3 lgID~GTts~Ka~l~d~~ 20 (484)
T PRK15027 3 IGIDLGTSGVKVILLNEQ 20 (484)
T ss_pred EEEEecccceEEEEEcCC
Confidence 599999999999999754
No 33
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=92.92 E-value=0.099 Score=36.54 Aligned_cols=18 Identities=11% Similarity=0.315 Sum_probs=16.1
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+||+++++++++..
T Consensus 4 lgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 4 LVLDCGATNLRAIAINRQ 21 (465)
T ss_pred EEEecCCCcEEEEEEcCC
Confidence 589999999999999754
No 34
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=92.76 E-value=0.099 Score=36.86 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=16.1
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+|||++++++++..
T Consensus 3 lgiDiGtt~~K~~l~d~~ 20 (505)
T TIGR01314 3 IGVDIGTTSTKAVLFEEN 20 (505)
T ss_pred EEEeccccceEEEEEcCC
Confidence 599999999999999755
No 35
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=92.29 E-value=0.13 Score=36.76 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=15.9
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+|||++++++++..
T Consensus 3 lgID~GTts~Ka~l~d~~ 20 (541)
T TIGR01315 3 IGVDVGTGSARACIIDST 20 (541)
T ss_pred EEEEecCcCEEEEEEcCC
Confidence 599999999999999644
No 36
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=92.29 E-value=0.1 Score=36.79 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=16.2
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+||+++++++++..
T Consensus 5 lgiDiGTts~Ka~l~d~~ 22 (504)
T PTZ00294 5 GSIDQGTTSTRFIIFDEK 22 (504)
T ss_pred EEEecCCCceEEEEECCC
Confidence 589999999999999764
No 37
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=92.24 E-value=0.11 Score=36.87 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=16.1
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+||+++++++++..
T Consensus 6 lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 6 MALDAGTGSIRAVIFDLN 23 (520)
T ss_pred EEEecCCCceEEEEECCC
Confidence 589999999999999754
No 38
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=92.15 E-value=0.18 Score=35.78 Aligned_cols=18 Identities=17% Similarity=0.492 Sum_probs=16.2
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+||++.++.+++..
T Consensus 7 lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 7 LGIDIGTTSVKAVLFDED 24 (502)
T ss_pred EEEEcCCCcEEEEEEeCC
Confidence 599999999999999765
No 39
>PRK04123 ribulokinase; Provisional
Probab=92.03 E-value=0.13 Score=36.55 Aligned_cols=16 Identities=19% Similarity=0.600 Sum_probs=15.1
Q ss_pred CeeecCCccEEEEEEc
Q psy4514 1 MSVDLGSEWMKVAIVS 16 (64)
Q Consensus 1 iGIDlGt~~s~va~~~ 16 (64)
+|||+||+++++++++
T Consensus 6 lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 6 IGLDFGTDSVRALLVD 21 (548)
T ss_pred EEEecCCCceEEEEEE
Confidence 5899999999999998
No 40
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=92.02 E-value=0.14 Score=35.92 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=16.0
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+|||++++++++..
T Consensus 4 lgiDiGtt~iKa~l~d~~ 21 (493)
T TIGR01311 4 LAIDQGTTSSRAIVFDKD 21 (493)
T ss_pred EEEecCCCceEEEEECCC
Confidence 599999999999999754
No 41
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=91.73 E-value=0.12 Score=36.70 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=15.2
Q ss_pred CeeecCCccEEEEEEc
Q psy4514 1 MSVDLGSEWMKVAIVS 16 (64)
Q Consensus 1 iGIDlGt~~s~va~~~ 16 (64)
+|||+||+++++++++
T Consensus 4 lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 4 IGVDFGTLSGRALAVD 19 (536)
T ss_pred EEEecCCCceEEEEEE
Confidence 5999999999999998
No 42
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=91.66 E-value=0.16 Score=27.77 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.6
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+|.+.+.+|+++..
T Consensus 4 lgiD~Ggt~i~~a~~d~~ 21 (99)
T smart00732 4 LGLDPGRKGIGVAVVDET 21 (99)
T ss_pred EEEccCCCeEEEEEECCC
Confidence 589999999999998643
No 43
>PRK00047 glpK glycerol kinase; Provisional
Probab=91.56 E-value=0.14 Score=36.07 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=15.8
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+||+++++++++..
T Consensus 8 lgiD~GTts~Ka~l~d~~ 25 (498)
T PRK00047 8 LALDQGTTSSRAIIFDHD 25 (498)
T ss_pred EEEecCCCceEEEEECCC
Confidence 589999999999999643
No 44
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=91.45 E-value=0.27 Score=32.76 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=18.4
Q ss_pred CeeecCCccEEEEEEcC-CCceEEE
Q psy4514 1 MSVDLGSEWMKVAIVSP-GVPMEIA 24 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~-g~~~~iv 24 (64)
+|||+|++.+++.++++ +..++++
T Consensus 4 ~GIDiGStttK~Vlid~~~~~~~~~ 28 (262)
T TIGR02261 4 AGIDIGTGAIKTVLFEVDGDKEECL 28 (262)
T ss_pred EEEEcCcccEEEEEEecCCCeeEEE
Confidence 59999999999999983 4234444
No 45
>PLN02295 glycerol kinase
Probab=91.22 E-value=0.2 Score=35.51 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=15.9
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+||+++++++++..
T Consensus 3 lgID~GTts~Ka~l~d~~ 20 (512)
T PLN02295 3 GAIDQGTTSTRFIIYDRD 20 (512)
T ss_pred EEEecCCCceEEEEECCC
Confidence 589999999999999743
No 46
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=90.60 E-value=0.28 Score=33.99 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=16.1
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
||||+||++.++++++..
T Consensus 1 lgIDiGtt~ik~~l~d~~ 18 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQ 18 (481)
T ss_pred CceeecCcceEEEEECCC
Confidence 699999999999999754
No 47
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=90.19 E-value=0.23 Score=33.68 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=16.4
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+|++.+++.+++++
T Consensus 35 ~GIDiGStt~K~Vlld~~ 52 (293)
T TIGR03192 35 CGIDVGSVSSQAVLVCDG 52 (293)
T ss_pred EEEEeCchhEEEEEEeCC
Confidence 599999999999999865
No 48
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=89.88 E-value=0.19 Score=34.97 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=15.3
Q ss_pred CeeecCCccEEEEEEcC
Q psy4514 1 MSVDLGSEWMKVAIVSP 17 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~ 17 (64)
++||+||+++++++++.
T Consensus 1 ~aiD~Gtt~~k~~l~~~ 17 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY 17 (454)
T ss_pred CcEeccCCchheEEEEE
Confidence 68999999999999864
No 49
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=89.72 E-value=0.026 Score=36.20 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=15.3
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
||+|+||+|+|++.+.+.
T Consensus 60 ~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 60 LGTGLGTNNAIREEREKS 77 (213)
T ss_pred eccCCCcchHHHHHHhcc
Confidence 699999999999887544
No 50
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=88.93 E-value=0.54 Score=31.67 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=28.3
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecC-C--------ceEEchhHHhh
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-G--------NSGTDICDKLI 53 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~-~--------~r~vG~~Ak~~ 53 (64)
|.||+|+.++++++..+..+ .+ ..||+|+... . ..++|+.|...
T Consensus 4 iviD~Gs~~~k~G~~~~~~P-~~--------~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~ 56 (373)
T smart00268 4 IVIDNGSGTIKAGFAGEDEP-QV--------VFPSIVGRPKDGKGMVGDAKDTFVGDEAQEK 56 (373)
T ss_pred EEEECCCCcEEEeeCCCCCC-cE--------EccceeeEecccccccCCCcceEecchhhhc
Confidence 57999999999988644322 22 2466666532 1 34789888543
No 51
>PLN02669 xylulokinase
Probab=88.91 E-value=0.39 Score=34.67 Aligned_cols=18 Identities=11% Similarity=0.355 Sum_probs=16.0
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
||||+||+..++.+++..
T Consensus 11 LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 11 LGFDSSTQSLKATVLDSN 28 (556)
T ss_pred EEEecccCCeEEEEEcCC
Confidence 599999999999999754
No 52
>PTZ00280 Actin-related protein 3; Provisional
Probab=88.86 E-value=0.56 Score=32.37 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=30.5
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccce----EEEecCCceEEchhHHhh
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT----LVAFHKGNSGTDICDKLI 53 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS----~V~f~~~~r~vG~~Ak~~ 53 (64)
|.||+|+.++++++..+..|--++++--++..... ...+...+.++|+.|.+.
T Consensus 7 iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~ 63 (414)
T PTZ00280 7 VVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAA 63 (414)
T ss_pred EEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhC
Confidence 47999999999999754434334444433322210 112223356789988764
No 53
>PRK13321 pantothenate kinase; Reviewed
Probab=87.66 E-value=0.49 Score=30.80 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=16.3
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
++||+|.|+.++|+++++
T Consensus 3 L~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEECCCeEEEEEEECC
Confidence 589999999999999865
No 54
>PRK13317 pantothenate kinase; Provisional
Probab=87.30 E-value=0.79 Score=30.55 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=16.3
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
||||+|.|..++++++++
T Consensus 5 iGIDiGstt~K~v~~~~~ 22 (277)
T PRK13317 5 IGIDAGGTLTKIVYLEEK 22 (277)
T ss_pred EEEEeCcccEEEEEEcCC
Confidence 699999999999998766
No 55
>PRK13318 pantothenate kinase; Reviewed
Probab=87.16 E-value=0.56 Score=30.48 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=16.3
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
++||+|.|+.++++++++
T Consensus 3 L~IDIGnT~iK~al~d~g 20 (258)
T PRK13318 3 LAIDVGNTNTVFGLYEGG 20 (258)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 489999999999999866
No 56
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=86.14 E-value=0.72 Score=26.69 Aligned_cols=18 Identities=44% Similarity=0.654 Sum_probs=15.3
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
++||+|++.+++++++.+
T Consensus 2 ~~iDiGs~~~~~~i~~~~ 19 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDG 19 (120)
T ss_dssp EEEEE-SSSEEEEEEETT
T ss_pred EEEEcCCCcEEEEEEEeC
Confidence 379999999999999887
No 57
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=85.76 E-value=1.2 Score=27.50 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=17.7
Q ss_pred CeeecCCccEEEEEEc---CCCceEEEe
Q psy4514 1 MSVDLGSEWMKVAIVS---PGVPMEIAL 25 (64)
Q Consensus 1 iGIDlGt~~s~va~~~---~g~~~~iv~ 25 (64)
+|||+||++.++.+.+ +| .++|+-
T Consensus 2 ~~lDIGs~~ik~vv~~~~~~~-~~~i~g 28 (187)
T smart00842 2 VGLDIGTSKIKALVAEVDEDG-EINVIG 28 (187)
T ss_pred EEEEeccceEEEEEEEEcCCC-CEEEEE
Confidence 4899999999987763 34 567664
No 58
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=84.37 E-value=2.6 Score=30.47 Aligned_cols=14 Identities=14% Similarity=0.506 Sum_probs=11.8
Q ss_pred CeeecCCccEEEEE
Q psy4514 1 MSVDLGSEWMKVAI 14 (64)
Q Consensus 1 iGIDlGt~~s~va~ 14 (64)
+|||+||+.+.+=+
T Consensus 6 VGIDIGTSTTQlvf 19 (473)
T PF06277_consen 6 VGIDIGTSTTQLVF 19 (473)
T ss_pred EEEeecCCceeEEE
Confidence 69999999888754
No 59
>PTZ00452 actin; Provisional
Probab=84.16 E-value=1.4 Score=30.31 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=31.1
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEE-EecCCceEEchhHHh
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV-AFHKGNSGTDICDKL 52 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V-~f~~~~r~vG~~Ak~ 52 (64)
|-||+|+.++++++..+..|--++++--|+.+.+..+ ...+++.++|+.|..
T Consensus 8 vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~ 60 (375)
T PTZ00452 8 VVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQA 60 (375)
T ss_pred EEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhc
Confidence 4699999999999985553444555554543332111 111235578998754
No 60
>PTZ00281 actin; Provisional
Probab=84.14 E-value=1.7 Score=29.76 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=30.6
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccce-EEEecCCceEEchhHHh
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT-LVAFHKGNSGTDICDKL 52 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS-~V~f~~~~r~vG~~Ak~ 52 (64)
|-||+|+.++++++..+..|--++++--|+.+... .+...+...++|+.|..
T Consensus 9 vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~ 61 (376)
T PTZ00281 9 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQS 61 (376)
T ss_pred EEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhc
Confidence 46999999999999755534445555544422221 11122335578887754
No 61
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=83.98 E-value=0.83 Score=32.59 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=16.6
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+|++.+++.+++++
T Consensus 5 lGIDIGSTsTKaVVmd~~ 22 (432)
T TIGR02259 5 VGIDLGSTTTKAVLMDDK 22 (432)
T ss_pred EEEEcCchhEEEEEEcCC
Confidence 599999999999999877
No 62
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=83.87 E-value=0.77 Score=32.49 Aligned_cols=18 Identities=22% Similarity=0.400 Sum_probs=16.2
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||.|+|.+++.+++++
T Consensus 147 lGIDiGSTttK~Vl~dd~ 164 (404)
T TIGR03286 147 LGIDSGSTTTKAVVMEDN 164 (404)
T ss_pred EEEEcChhheeeEEEcCC
Confidence 599999999999999865
No 63
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=83.63 E-value=1.2 Score=31.39 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=17.1
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||.|+|..++.+++++
T Consensus 138 LGID~GSTtTK~VLm~d~ 155 (396)
T COG1924 138 LGIDSGSTTTKAVLMEDG 155 (396)
T ss_pred EEEecCCcceeEEEEeCC
Confidence 599999999999999998
No 64
>PTZ00004 actin-2; Provisional
Probab=81.85 E-value=1.6 Score=29.79 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=29.0
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccce-EEEecCCceEEchhHHh
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT-LVAFHKGNSGTDICDKL 52 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS-~V~f~~~~r~vG~~Ak~ 52 (64)
|-||+|+.++++++..+..|--++++--++...+. ......+..++|+.|..
T Consensus 9 vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~ 61 (378)
T PTZ00004 9 AVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQD 61 (378)
T ss_pred EEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhc
Confidence 46999999999998755433334444444322211 01111234578887754
No 65
>PTZ00466 actin-like protein; Provisional
Probab=81.67 E-value=2.1 Score=29.43 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=30.8
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccce-EEEecCCceEEchhHHhh
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT-LVAFHKGNSGTDICDKLI 53 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS-~V~f~~~~r~vG~~Ak~~ 53 (64)
|-||+|+.+++++...+..|--++++--|+.+... ......+..++|+.|...
T Consensus 15 iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~ 68 (380)
T PTZ00466 15 IIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEY 68 (380)
T ss_pred EEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhh
Confidence 46999999999999755434334454444432221 111223356789887653
No 66
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=81.26 E-value=1.3 Score=28.26 Aligned_cols=16 Identities=38% Similarity=0.738 Sum_probs=14.1
Q ss_pred CeeecCCccEEEEEEc
Q psy4514 1 MSVDLGSEWMKVAIVS 16 (64)
Q Consensus 1 iGIDlGt~~s~va~~~ 16 (64)
++||||.||..|+.++
T Consensus 66 LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 66 LALDLGGTNLRVALVE 81 (206)
T ss_dssp EEEEESSSSEEEEEEE
T ss_pred EEEeecCcEEEEEEEE
Confidence 4799999999999874
No 67
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=80.94 E-value=4.2 Score=29.44 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=11.8
Q ss_pred CeeecCCccEEEEE
Q psy4514 1 MSVDLGSEWMKVAI 14 (64)
Q Consensus 1 iGIDlGt~~s~va~ 14 (64)
+|||+||+.+.+=+
T Consensus 9 VGIDIGTsTTqlvf 22 (475)
T PRK10719 9 VGIDIGTTTTQVIF 22 (475)
T ss_pred EEEeccCceEEEEE
Confidence 69999999988744
No 68
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=80.21 E-value=3 Score=24.29 Aligned_cols=18 Identities=17% Similarity=0.540 Sum_probs=16.4
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
||||++.....++++.+.
T Consensus 2 vGiDv~k~~~~v~v~~~~ 19 (144)
T PF01548_consen 2 VGIDVSKDTHDVCVIDPN 19 (144)
T ss_pred EEEEcccCeEEEEEEcCC
Confidence 699999999999998777
No 69
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=79.89 E-value=3.4 Score=26.93 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=16.2
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+.||.|+|+.++|+++++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 469999999999999876
No 70
>PRK00292 glk glucokinase; Provisional
Probab=77.98 E-value=1.9 Score=28.52 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=15.0
Q ss_pred CeeecCCccEEEEEEc
Q psy4514 1 MSVDLGSEWMKVAIVS 16 (64)
Q Consensus 1 iGIDlGt~~s~va~~~ 16 (64)
+|||+|.|++++++++
T Consensus 5 lgiDIGgT~i~~~l~~ 20 (316)
T PRK00292 5 LVGDIGGTNARFALCD 20 (316)
T ss_pred EEEEcCccceEEEEEe
Confidence 5899999999999997
No 71
>PRK13326 pantothenate kinase; Reviewed
Probab=76.77 E-value=2.3 Score=28.13 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=16.2
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+.||.|+|+.++++++++
T Consensus 9 L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 9 LIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEeCCCeEEEEEEECC
Confidence 369999999999999876
No 72
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=76.63 E-value=2.9 Score=29.57 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=24.6
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCCceEEchhHHhhh
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIG 54 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~~ 54 (64)
+.||+|||....++++-..+ +++ ...++.+.++.+|.+..++.
T Consensus 4 iAvDiGTTti~~~L~dl~~G-~~l----------~~~s~~NpQ~~~GaDViSRI 46 (412)
T PF14574_consen 4 IAVDIGTTTIAAYLVDLETG-EVL----------ATASFLNPQRAYGADVISRI 46 (412)
T ss_dssp EEEEE-SSEEEEEEEETTT---EE----------EEEEEE-GGGGT-SSHHHHH
T ss_pred EEEEcchhheeeEEEECCCC-CEE----------EeecccCCCCCcchHHHHHH
Confidence 47999999999888853211 222 34555566666776665554
No 73
>KOG2517|consensus
Probab=75.49 E-value=2.2 Score=31.15 Aligned_cols=16 Identities=13% Similarity=0.470 Sum_probs=14.8
Q ss_pred CeeecCCccEEEEEEc
Q psy4514 1 MSVDLGSEWMKVAIVS 16 (64)
Q Consensus 1 iGIDlGt~~s~va~~~ 16 (64)
+|||+||+.+..++++
T Consensus 9 ~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 9 LGIDVGTTSARALVFN 24 (516)
T ss_pred EEEEcCCCceEEEEEe
Confidence 4899999999999987
No 74
>PRK12408 glucokinase; Provisional
Probab=74.12 E-value=1.7 Score=29.39 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=15.4
Q ss_pred CeeecCCccEEEEEEcC
Q psy4514 1 MSVDLGSEWMKVAIVSP 17 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~ 17 (64)
+++|+|.|+++.|+++.
T Consensus 19 L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 19 VAADVGGTHVRVALVCA 35 (336)
T ss_pred EEEEcChhhhheeEEec
Confidence 58999999999999974
No 75
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=74.11 E-value=4.5 Score=26.09 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.9
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
||||-|.|.+.+.+++..
T Consensus 1 lGIDgGgTkt~~vl~d~~ 18 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDEN 18 (271)
T ss_dssp EEEEECSSEEEEEEEETT
T ss_pred CEEeeChheeeeEEEeCC
Confidence 699999999999988765
No 76
>PF13941 MutL: MutL protein
Probab=72.98 E-value=4.1 Score=29.28 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=19.5
Q ss_pred eeecCCccEEEEEEc--CCCceEEEeC
Q psy4514 2 SVDLGSEWMKVAIVS--PGVPMEIALN 26 (64)
Q Consensus 2 GIDlGt~~s~va~~~--~g~~~~iv~n 26 (64)
-+|+|+||.++.+++ .+ ..+++-.
T Consensus 4 ~~DiGST~Tk~~l~d~~~~-~~~~ig~ 29 (457)
T PF13941_consen 4 VVDIGSTYTKVTLFDLVDG-EPRLIGQ 29 (457)
T ss_pred EEEeCCcceEEeEEeccCC-ccEEEEE
Confidence 589999999999998 66 5667643
No 77
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=72.43 E-value=5.4 Score=27.04 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=17.8
Q ss_pred CeeecCCccEEEEEEc--CCCceEEEe
Q psy4514 1 MSVDLGSEWMKVAIVS--PGVPMEIAL 25 (64)
Q Consensus 1 iGIDlGt~~s~va~~~--~g~~~~iv~ 25 (64)
+|||+||++.++.+.+ ++..++++.
T Consensus 3 ~~lDIGs~~ik~vv~~~~~~~~~~i~~ 29 (371)
T TIGR01174 3 VGLDIGTSKICAIVAEVLEDGELNIIG 29 (371)
T ss_pred EEEEeccceEEEEEEEEcCCCCEEEEE
Confidence 4899999999987753 321466654
No 78
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=71.00 E-value=6.8 Score=26.06 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=16.2
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+.||.|+|+.+.|+++++
T Consensus 3 L~iDiGNT~~~~a~~~~~ 20 (251)
T COG1521 3 LLIDIGNTRIVFALYEGG 20 (251)
T ss_pred EEEEeCCCeEEEEEecCC
Confidence 479999999999999866
No 79
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=68.62 E-value=3 Score=30.49 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=15.6
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+|.|++++|+++..
T Consensus 21 L~iDIGGT~ir~al~~~~ 38 (638)
T PRK14101 21 LLADVGGTNARFALETGP 38 (638)
T ss_pred EEEEcCchhheeeeecCC
Confidence 589999999999999543
No 80
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=68.62 E-value=6.9 Score=26.01 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=17.0
Q ss_pred CeeecCCccEEEEEEcC-CCceEE
Q psy4514 1 MSVDLGSEWMKVAIVSP-GVPMEI 23 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~-g~~~~i 23 (64)
+|||+|+...+++..+. +.++.+
T Consensus 6 vgiDIg~~~Ik~v~~~~~~~~~~v 29 (348)
T TIGR01175 6 VGIDIGSTSVKVAQLKRSGDRYKL 29 (348)
T ss_pred EEEEeccCeEEEEEEEecCCceEE
Confidence 59999999999988762 324444
No 81
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=68.16 E-value=5.6 Score=23.59 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.4
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+|+..+=+|+.++.
T Consensus 1 laiD~G~kriGvA~~d~~ 18 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDIT 18 (130)
T ss_pred CeEccCCCeEEEEEECCC
Confidence 699999999999987653
No 82
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=68.06 E-value=5.4 Score=23.84 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=22.0
Q ss_pred CeeecCCccEEEEEEcCCC----ceEEEeCCC
Q psy4514 1 MSVDLGSEWMKVAIVSPGV----PMEIALNKE 28 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~----~~~iv~n~~ 28 (64)
+|||+|+-.+=+|+.++.. +.+++.+..
T Consensus 4 L~lD~G~kriGiAvsd~~~~~a~pl~~i~~~~ 35 (135)
T PF03652_consen 4 LGLDYGTKRIGIAVSDPLGIIASPLETIPRRN 35 (135)
T ss_dssp EEEEECSSEEEEEEEETTTSSEEEEEEEEECC
T ss_pred EEEEeCCCeEEEEEecCCCCeEeeeEEEECCC
Confidence 5899999999999988762 457777553
No 83
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=66.32 E-value=8.1 Score=26.89 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=16.9
Q ss_pred CeeecCCccEEEEEEc---CCCceEEEe
Q psy4514 1 MSVDLGSEWMKVAIVS---PGVPMEIAL 25 (64)
Q Consensus 1 iGIDlGt~~s~va~~~---~g~~~~iv~ 25 (64)
+|||+||+..++.+.+ ++ .++|+-
T Consensus 11 ~~lDIGsskv~~vv~~~~~~~-~~~i~g 37 (420)
T PRK09472 11 VGLEIGTAKVAALVGEVLPDG-MVNIIG 37 (420)
T ss_pred EEEEcccceEEEEEEEEcCCC-CEEEEE
Confidence 4899999999876543 33 566664
No 84
>PRK13320 pantothenate kinase; Reviewed
Probab=66.16 E-value=5.8 Score=25.87 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=16.0
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+.||.|+|+.+.++++++
T Consensus 5 L~iDiGNT~ik~~~~~~~ 22 (244)
T PRK13320 5 LVIDIGNTTTKLAVFEGD 22 (244)
T ss_pred EEEEeCCCcEEEEEEECC
Confidence 369999999999999876
No 85
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=65.49 E-value=5.2 Score=26.20 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.1
Q ss_pred CeeecCCccEEEEEEc
Q psy4514 1 MSVDLGSEWMKVAIVS 16 (64)
Q Consensus 1 iGIDlGt~~s~va~~~ 16 (64)
+|||+||+..++-+.+
T Consensus 27 ~~iDiGSssi~~vv~~ 42 (267)
T PRK15080 27 VGVDLGTANIVLAVLD 42 (267)
T ss_pred EEEEccCceEEEEEEc
Confidence 4899999998877754
No 86
>PLN02914 hexokinase
Probab=64.93 E-value=2.7 Score=30.37 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=27.5
Q ss_pred CeeecCCccEEEEEEcC-CCceEEEeCCCCCCccceEEEecCCceEEchhHH
Q psy4514 1 MSVDLGSEWMKVAIVSP-GVPMEIALNKESKRKTPTLVAFHKGNSGTDICDK 51 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~-g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak 51 (64)
+.||||.||..|+.++= |..-.++...+.+...|.-+.....+.|++.-|.
T Consensus 98 LAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~ 149 (490)
T PLN02914 98 YALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQELMFGTSEELFDFIAS 149 (490)
T ss_pred EEEecCCceEEEEEEEecCCCCceeeeeEEEecCChhhccCCHHHHHHHHHH
Confidence 47999999999999742 2111233333344444544443333345544443
No 87
>PRK13331 pantothenate kinase; Reviewed
Probab=64.40 E-value=6.6 Score=26.00 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=16.0
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+.||.|+|+.++|++++.
T Consensus 10 L~iDiGNT~~~~g~f~~~ 27 (251)
T PRK13331 10 LALMIGNSRLHWGYFSGE 27 (251)
T ss_pred EEEEeCCCcEEEEEEECC
Confidence 369999999999999866
No 88
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=63.55 E-value=6.2 Score=25.35 Aligned_cols=18 Identities=11% Similarity=0.387 Sum_probs=15.7
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+|.|+..+++++-.
T Consensus 3 lgidiggt~i~~~l~d~~ 20 (256)
T PRK13311 3 YGFDMGGTKIELGVFDEN 20 (256)
T ss_pred EEEEECCCcEEEEEECCC
Confidence 589999999999999643
No 89
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=63.51 E-value=12 Score=22.66 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=14.0
Q ss_pred CeeecCCccEEEEEEc
Q psy4514 1 MSVDLGSEWMKVAIVS 16 (64)
Q Consensus 1 iGIDlGt~~s~va~~~ 16 (64)
+|||.|+++.=.|+++
T Consensus 3 LGIDPGl~~~G~av~~ 18 (154)
T cd00529 3 LGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEccCcCceEEEEEE
Confidence 5999999998888874
No 90
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=63.51 E-value=6.6 Score=24.65 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=14.9
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+-||.|+|+.+++++++.
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 359999999999999776
No 91
>PLN02362 hexokinase
Probab=63.33 E-value=3.3 Score=30.11 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=14.1
Q ss_pred CeeecCCccEEEEEEc
Q psy4514 1 MSVDLGSEWMKVAIVS 16 (64)
Q Consensus 1 iGIDlGt~~s~va~~~ 16 (64)
+.||||.||..|+.++
T Consensus 98 LAlDlGGTNfRV~~V~ 113 (509)
T PLN02362 98 YALDLGGTNFRVLRVQ 113 (509)
T ss_pred EEEecCCceEEEEEEE
Confidence 4799999999999874
No 92
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=63.19 E-value=7.3 Score=25.91 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=15.5
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+.+|+|.|++++++++..
T Consensus 1 l~~DIGGT~i~~glvd~~ 18 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIA 18 (316)
T ss_pred CeEecCcceeeEEEEecC
Confidence 469999999999999753
No 93
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=62.97 E-value=9.6 Score=27.20 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=39.4
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCc-cceEEEe-cCCceEEchhHHhhhh
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRK-TPTLVAF-HKGNSGTDICDKLIGC 55 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~-tpS~V~f-~~~~r~vG~~Ak~~~~ 55 (64)
|-||-|+.++++++..+-.+.-|.++..+++. +.++..- ..+.+.+|..+..-..
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~ 65 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRD 65 (444)
T ss_pred EEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccC
Confidence 46999999999999876556677888778775 5555542 2467778887765443
No 94
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=62.75 E-value=8.2 Score=23.96 Aligned_cols=18 Identities=11% Similarity=0.516 Sum_probs=14.9
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
||||.|.||.=+-+++++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 699999999877777665
No 95
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=62.11 E-value=27 Score=23.28 Aligned_cols=53 Identities=13% Similarity=-0.001 Sum_probs=28.9
Q ss_pred eeecCCccEEEEEEcCCCceEE--EeCC-----------CC--CCccceEEEecCCceEEchhHHhhh
Q psy4514 2 SVDLGSEWMKVAIVSPGVPMEI--ALNK-----------ES--KRKTPTLVAFHKGNSGTDICDKLIG 54 (64)
Q Consensus 2 GIDlGt~~s~va~~~~g~~~~i--v~n~-----------~g--~r~tpS~V~f~~~~r~vG~~Ak~~~ 54 (64)
|||+|.-|.+++..+.+..+.. ++.- .+ ....--.|.+.+.+.+||+.|....
T Consensus 1 ~iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~ 68 (320)
T TIGR03739 1 AVDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAA 68 (320)
T ss_pred CccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhcc
Confidence 7999999999887544312211 1111 00 1111123445566778999886544
No 96
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=61.00 E-value=9.3 Score=25.46 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=13.1
Q ss_pred CeeecCCccEEEEEEcC
Q psy4514 1 MSVDLGSEWMKVAIVSP 17 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~ 17 (64)
+|+||||.+...-+.+.
T Consensus 32 vGVDLGT~~iV~~vlD~ 48 (277)
T COG4820 32 VGVDLGTCDIVSMVLDR 48 (277)
T ss_pred EEeecccceEEEEEEcC
Confidence 58999998877666643
No 97
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=60.90 E-value=14 Score=25.40 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.8
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
||+|+|..|.+++.+++.
T Consensus 1 ~G~DiGGA~~K~a~~~~~ 18 (318)
T TIGR03123 1 LGIDIGGANTKAAELDED 18 (318)
T ss_pred CccccccceeeeEEecCC
Confidence 799999999999988733
No 98
>PRK13324 pantothenate kinase; Reviewed
Probab=59.83 E-value=8.8 Score=25.39 Aligned_cols=18 Identities=11% Similarity=0.495 Sum_probs=15.7
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+.||.|+|+.+.++++++
T Consensus 3 L~iDiGNT~ik~gl~~~~ 20 (258)
T PRK13324 3 LVMDMGNSHIHIGVFDGD 20 (258)
T ss_pred EEEEeCCCceEEEEEECC
Confidence 368999999999999865
No 99
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=59.36 E-value=9.1 Score=22.93 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=19.9
Q ss_pred CeeecCCccEEEEEEcCC----CceEEEeCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG----VPMEIALNK 27 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g----~~~~iv~n~ 27 (64)
+|||+|+-.+=+|+.++. .+..++...
T Consensus 7 LalD~G~kriGvAv~d~~~~~a~pl~~i~~~ 37 (138)
T PRK00109 7 LGLDVGTKRIGVAVSDPLGGTAQPLETIKRN 37 (138)
T ss_pred EEEEeCCCEEEEEEecCCCCEEcCEEEEEcC
Confidence 589999999999998763 245555543
No 100
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=57.65 E-value=9.6 Score=25.64 Aligned_cols=18 Identities=28% Similarity=0.612 Sum_probs=15.3
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
||||.|.|-.++++.+.+
T Consensus 3 iGiDiGgT~~Kiv~~~~~ 20 (279)
T TIGR00555 3 IGIDIGGTLIKVVYEEPK 20 (279)
T ss_pred EEEEeCcceEEEEEEcCC
Confidence 699999999999998443
No 101
>PRK09557 fructokinase; Reviewed
Probab=56.97 E-value=9.4 Score=24.98 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=15.7
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+|.++..+++++..
T Consensus 3 lgidig~t~~~~~l~d~~ 20 (301)
T PRK09557 3 IGIDLGGTKIEVIALDDA 20 (301)
T ss_pred EEEEECCCcEEEEEECCC
Confidence 599999999999999743
No 102
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=56.83 E-value=10 Score=27.49 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=20.6
Q ss_pred eecCCccEEEEEEcCCCceEEEeCCCCCCccceEE
Q psy4514 3 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV 37 (64)
Q Consensus 3 IDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V 37 (64)
+|||+||.++..++-. .-+++.-.++ .+|+.+
T Consensus 1 ~DiGST~Tk~~a~~~~-~~~~~~~~~~--~tpTt~ 32 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIE-GDAILATAHD--ITPIES 32 (463)
T ss_pred CCccccceEEEEEecC-CCcEEEEEec--cCccch
Confidence 6999999999999533 2344444333 345555
No 103
>PLN02405 hexokinase
Probab=55.56 E-value=4.7 Score=29.25 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=28.2
Q ss_pred CeeecCCccEEEEEEcC-CCceEEEeCCCCCCccceEEEecCCceEEchhHHhh
Q psy4514 1 MSVDLGSEWMKVAIVSP-GVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLI 53 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~-g~~~~iv~n~~g~r~tpS~V~f~~~~r~vG~~Ak~~ 53 (64)
+.||||.||..|..++= |..-.++.-.+.+...|.-+.-...+.|++.-|...
T Consensus 98 lAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i 151 (497)
T PLN02405 98 YALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAAL 151 (497)
T ss_pred EEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHH
Confidence 47999999999998742 211112222233444555544333344555555443
No 104
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=54.95 E-value=5.7 Score=26.67 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.0
Q ss_pred eeecCCccEEEEEEcC
Q psy4514 2 SVDLGSEWMKVAIVSP 17 (64)
Q Consensus 2 GIDlGt~~s~va~~~~ 17 (64)
|||+|+.+.+++..+.
T Consensus 1 GiDiG~~siK~v~l~~ 16 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSK 16 (340)
T ss_dssp EEEE-SSEEEEEEEET
T ss_pred CeecCCCeEEEEEEEE
Confidence 8999999999987754
No 105
>PTZ00288 glucokinase 1; Provisional
Probab=54.35 E-value=10 Score=26.78 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=15.2
Q ss_pred CeeecCCccEEEEEEcC
Q psy4514 1 MSVDLGSEWMKVAIVSP 17 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~ 17 (64)
+|+|.|.||+.+++++.
T Consensus 29 ~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 29 VGCDVGGTNARVGFARE 45 (405)
T ss_pred EEEEecCCceEEEEEec
Confidence 58999999999999865
No 106
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=54.34 E-value=11 Score=27.28 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=13.7
Q ss_pred CeeecCCccEEEEEEc
Q psy4514 1 MSVDLGSEWMKVAIVS 16 (64)
Q Consensus 1 iGIDlGt~~s~va~~~ 16 (64)
+.||||.||-.++.++
T Consensus 78 LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 78 LAIDLGGTNLRVCLVV 93 (466)
T ss_pred EEEecCCceEEEEEEE
Confidence 4699999999998874
No 107
>PTZ00107 hexokinase; Provisional
Probab=53.90 E-value=10 Score=27.25 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=14.0
Q ss_pred CeeecCCccEEEEEEc
Q psy4514 1 MSVDLGSEWMKVAIVS 16 (64)
Q Consensus 1 iGIDlGt~~s~va~~~ 16 (64)
+.||||.||..|+.++
T Consensus 77 LAlDlGGTN~RV~~V~ 92 (464)
T PTZ00107 77 YAIDFGGTNFRAVRVS 92 (464)
T ss_pred EEEecCCceEEEEEEE
Confidence 4799999999999874
No 108
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=53.11 E-value=14 Score=24.17 Aligned_cols=17 Identities=29% Similarity=0.622 Sum_probs=15.3
Q ss_pred CeeecCCccEEEEEEcC
Q psy4514 1 MSVDLGSEWMKVAIVSP 17 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~ 17 (64)
+|||+|.++..+++++-
T Consensus 1 lgidig~t~~~~~l~d~ 17 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDE 17 (318)
T ss_pred CEEEeCCCEEEEEEECC
Confidence 69999999999999863
No 109
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=53.11 E-value=9.9 Score=24.52 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=12.2
Q ss_pred eeecCCccEEEEEEc
Q psy4514 2 SVDLGSEWMKVAIVS 16 (64)
Q Consensus 2 GIDlGt~~s~va~~~ 16 (64)
|+|+||++.++-+.+
T Consensus 1 g~dig~~~ik~v~~~ 15 (239)
T TIGR02529 1 GVDLGTANIVIVVLD 15 (239)
T ss_pred CCCcccceEEEEEEe
Confidence 799999999876643
No 110
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=51.82 E-value=13 Score=24.35 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=15.8
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+|.|+..+++++..
T Consensus 3 lgidig~t~i~~~l~d~~ 20 (303)
T PRK13310 3 YGFDIGGTKIELGVFNEK 20 (303)
T ss_pred EEEEeCCCcEEEEEECCC
Confidence 589999999999999743
No 111
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=51.54 E-value=13 Score=24.46 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=15.9
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+|.|+..+++.+..
T Consensus 9 lgidIggt~i~~~l~d~~ 26 (314)
T COG1940 9 LGIDIGGTKIKVALVDLD 26 (314)
T ss_pred EEEEecCCEEEEEEECCC
Confidence 599999999999998764
No 112
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=48.08 E-value=19 Score=22.94 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=23.4
Q ss_pred CccceEEEecCC---ceEEchhHHhhhhcCCCC
Q psy4514 31 RKTPTLVAFHKG---NSGTDICDKLIGCWTPVI 60 (64)
Q Consensus 31 r~tpS~V~f~~~---~r~vG~~Ak~~~~~nP~n 60 (64)
..-|-+|+|++. ..--|+.|......||+-
T Consensus 51 ~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~I 83 (180)
T PF14097_consen 51 PHDPVLVMFDDKGFIGEGPGEQALEYVANHPDI 83 (180)
T ss_pred CCCCEEEEEeCCCCCCCCccHHHHHHHHcCCCc
Confidence 345999999864 334899999999999864
No 113
>PRK13322 pantothenate kinase; Reviewed
Probab=48.00 E-value=17 Score=23.75 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=14.8
Q ss_pred eeecCCccEEEEEEcC
Q psy4514 2 SVDLGSEWMKVAIVSP 17 (64)
Q Consensus 2 GIDlGt~~s~va~~~~ 17 (64)
-||.|+|+.+.+++++
T Consensus 4 ~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 4 ELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEeCCCcEEEEEEcC
Confidence 5999999999999986
No 114
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=47.11 E-value=21 Score=23.87 Aligned_cols=18 Identities=33% Similarity=0.459 Sum_probs=14.6
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
|+||-|.++.+++-+.+|
T Consensus 3 i~iDdG~~~~K~~~~~~~ 20 (318)
T PF06406_consen 3 IAIDDGSTNVKLAWYEDG 20 (318)
T ss_dssp EEEEE-SSEEEEEEE-SS
T ss_pred EEEecCCCceeEEEecCC
Confidence 589999999999999877
No 115
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=46.59 E-value=19 Score=21.99 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=15.3
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|+|+|+-.+=||+-+..
T Consensus 5 lalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 5 LALDVGTKRIGVAVSDIL 22 (141)
T ss_pred EEEecCCceEEEEEecCC
Confidence 589999999999997655
No 116
>PRK09698 D-allose kinase; Provisional
Probab=46.59 E-value=17 Score=23.71 Aligned_cols=18 Identities=17% Similarity=0.591 Sum_probs=15.6
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+|.|+..+++++..
T Consensus 7 lgidig~t~i~~~l~d~~ 24 (302)
T PRK09698 7 LGIDMGGTHIRFCLVDAE 24 (302)
T ss_pred EEEEcCCcEEEEEEEcCC
Confidence 589999999999998743
No 117
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=46.56 E-value=15 Score=27.14 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=15.7
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
||+|+||..-.+++++-.
T Consensus 6 iGvDvGTgSaRA~v~D~~ 23 (544)
T COG1069 6 IGVDVGTGSARAGVFDCQ 23 (544)
T ss_pred EEEeecCCceeEEEEEcC
Confidence 699999999999998654
No 118
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=45.62 E-value=55 Score=20.89 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=25.3
Q ss_pred CeeecCCcc-EEEEEEcCCCceEEEeCCCCC-------CccceEEEec
Q psy4514 1 MSVDLGSEW-MKVAIVSPGVPMEIALNKESK-------RKTPTLVAFH 40 (64)
Q Consensus 1 iGIDlGt~~-s~va~~~~g~~~~iv~n~~g~-------r~tpS~V~f~ 40 (64)
.|||+|--. +++|++.++ .++++---... +..+ +|+|+
T Consensus 4 ~GIDla~k~~tavavl~~~-~~~~i~~~s~~eeiv~s~~~a~-vvaiD 49 (178)
T COG2410 4 AGIDLAVKRSTAVAVLIEG-RIEIISAWSSREEIVESCKSAK-VVAID 49 (178)
T ss_pred cccccccCCCceEEEEECC-EEEEEEcccccHHHHHHhhccc-eEEec
Confidence 389998653 489999999 88877643332 3334 66665
No 119
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=44.91 E-value=22 Score=23.94 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=27.1
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEEecCC-----ceEEchhHHh
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----NSGTDICDKL 52 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~f~~~-----~r~vG~~Ak~ 52 (64)
|-||+|+.++++++..+..|- ...|+++..... ..++|+.+..
T Consensus 7 vViD~Gs~~~k~G~age~~P~---------~v~ps~~~~~~~~~~~~~~~~g~~~~~ 54 (393)
T PF00022_consen 7 VVIDNGSSTIKAGFAGEDLPR---------VVIPSVVGRPRDKNSSNDYYVGDEALS 54 (393)
T ss_dssp EEEEECSSEEEEEETTSSS-S---------EEEESEEEEESSSSSSSSCEETHHHHH
T ss_pred EEEECCCceEEEEECCCCCCC---------CcCCCccccccccccceeEEeeccccc
Confidence 359999999999996443222 234667665322 3578887443
No 120
>PLN02596 hexokinase-like
Probab=44.77 E-value=18 Score=26.34 Aligned_cols=16 Identities=6% Similarity=0.040 Sum_probs=14.0
Q ss_pred CeeecCCccEEEEEEc
Q psy4514 1 MSVDLGSEWMKVAIVS 16 (64)
Q Consensus 1 iGIDlGt~~s~va~~~ 16 (64)
+.||||.||..|+.++
T Consensus 99 LAlDlGGTNfRV~~V~ 114 (490)
T PLN02596 99 YGLNLRGSNFLLLRAR 114 (490)
T ss_pred EEEeeCCceEEEEEEE
Confidence 4799999999999874
No 121
>PF12565 DUF3747: Protein of unknown function (DUF3747); InterPro: IPR022222 This family of proteins is found in bacteria. Proteins in this family are typically between 215 and 413 amino acids in length. There is a conserved DSNGYS sequence motif.
Probab=44.22 E-value=73 Score=20.39 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=22.0
Q ss_pred eeecCCccEEEEEEcCCCceEEEeCCCCCCccceEEE
Q psy4514 2 SVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVA 38 (64)
Q Consensus 2 GIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tpS~V~ 38 (64)
|-|||+.|..-=+-++| .+..+..+..++.-|-+|-
T Consensus 104 G~Dlg~~YrLrlv~~~~-el~L~a~~~~~~~~p~ivi 139 (181)
T PF12565_consen 104 GQDLGLRYRLRLVQRNG-ELVLVATPRRDPSAPEIVI 139 (181)
T ss_pred CeecCceEEEEEEEECC-EEEEEecCCCCCCcceEEE
Confidence 67999977654444444 6666666655555554443
No 122
>COG3251 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.94 E-value=26 Score=19.15 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=29.0
Q ss_pred ceEEEeCCCCCCcc-ceEEEecCCceEEchhHHhhhh
Q psy4514 20 PMEIALNKESKRKT-PTLVAFHKGNSGTDICDKLIGC 55 (64)
Q Consensus 20 ~~~iv~n~~g~r~t-pS~V~f~~~~r~vG~~Ak~~~~ 55 (64)
..-|+.|+++.... |.......+-|++|+..-..+.
T Consensus 12 ~f~vlvN~e~QySLWP~~~~iPaGW~~v~~~~sr~aC 48 (71)
T COG3251 12 QFYVLVNDEGQYSLWPVFCAIPAGWRVVHEPGSREAC 48 (71)
T ss_pred eEEEEEcCccccccchhccCCCccceeecccccHHHH
Confidence 67899999998765 8888888889999887766554
No 123
>KOG0676|consensus
Probab=43.92 E-value=21 Score=25.11 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=31.8
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCC-CccceEEEecCCceEEchhHHhh
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESK-RKTPTLVAFHKGNSGTDICDKLI 53 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~-r~tpS~V~f~~~~r~vG~~Ak~~ 53 (64)
+-||.|+..++.+..-...+--++++-.|. |...+.++...+.-++|+.|...
T Consensus 10 vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~ 63 (372)
T KOG0676|consen 10 VVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESK 63 (372)
T ss_pred EEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhcc
Confidence 358999999998886333244566665544 22333344445566778877644
No 124
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=43.66 E-value=32 Score=24.51 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=16.5
Q ss_pred CeeecCCccEEEEE--EcCCCceEEEe
Q psy4514 1 MSVDLGSEWMKVAI--VSPGVPMEIAL 25 (64)
Q Consensus 1 iGIDlGt~~s~va~--~~~g~~~~iv~ 25 (64)
+|+|+||+..|+-+ ++++..++++-
T Consensus 9 v~LDIGTskV~~lVge~~~~g~i~iig 35 (418)
T COG0849 9 VGLDIGTSKVKALVGELRPDGRLNIIG 35 (418)
T ss_pred EEEEccCcEEEEEEEEEcCCCeEEEEe
Confidence 48999999888755 34442355553
No 125
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=42.28 E-value=24 Score=23.48 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=15.4
Q ss_pred CeeecCCccEEEEEEcCCCce
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPM 21 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~ 21 (64)
|.+|.|.|..-|+++.+| .+
T Consensus 80 i~vDmGGTTtDi~~i~~G-~p 99 (290)
T PF01968_consen 80 IVVDMGGTTTDIALIKDG-RP 99 (290)
T ss_dssp EEEEE-SS-EEEEEEETT-EE
T ss_pred EEEeCCCCEEEEEEEECC-ee
Confidence 468999999999999999 44
No 126
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=42.12 E-value=20 Score=26.26 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=15.1
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+.||-|||++.+.+++..
T Consensus 8 lAiDqGTTssRaivfd~~ 25 (499)
T COG0554 8 LAIDQGTTSSRAIVFDED 25 (499)
T ss_pred EEEecCCcceeEEEECCC
Confidence 369999999999998654
No 127
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=41.68 E-value=24 Score=21.00 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=14.8
Q ss_pred eeecCCccEEEEEEcCC
Q psy4514 2 SVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 2 GIDlGt~~s~va~~~~g 18 (64)
|||+|.++..+++++-.
T Consensus 1 gidig~~~i~~~l~d~~ 17 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLD 17 (179)
T ss_dssp EEEEESSEEEEEEEETT
T ss_pred CEEECCCEEEEEEECCC
Confidence 79999999999998744
No 128
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.38 E-value=31 Score=23.71 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=18.3
Q ss_pred CeeecCCccEEEEEEcCCCceEE
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEI 23 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~i 23 (64)
+|||-||+-...+++++.+.++.
T Consensus 6 VGiDHGTsgi~~ai~d~e~~~~F 28 (332)
T COG4020 6 VGIDHGTSGIKFAIYDGEKDPEF 28 (332)
T ss_pred EeecCCCcceEEEEEcCCCCceE
Confidence 59999999999999976534443
No 129
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=40.17 E-value=42 Score=23.98 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.7
Q ss_pred eeecCCccEEEEEEcCCCceEEEeCC
Q psy4514 2 SVDLGSEWMKVAIVSPGVPMEIALNK 27 (64)
Q Consensus 2 GIDlGt~~s~va~~~~g~~~~iv~n~ 27 (64)
-||.|.+-+++-.+++|..-++.+|+
T Consensus 233 IiDIGGQD~K~i~i~dG~v~df~mN~ 258 (396)
T COG1924 233 VIDIGGQDSKVIKLEDGKVDDFTMND 258 (396)
T ss_pred EEEecCcceeEEEEeCCeeeeeEecc
Confidence 48999999999999999777888886
No 130
>PF01385 OrfB_IS605: Probable transposase; InterPro: IPR001959 This entry represents a conserved region of a probable transposase family, which is found in a number of uncharacterised bacterial proteins. A novel insertion sequence (IS)-like element of the Bacillus PS3 (Thermophilic bacterium PS-3) that promotes expression of the alanine carrier protein-encoding gene belongs to this entry, including IS891 [], IS1136 [], and IS1341 []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=40.14 E-value=14 Score=22.58 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=12.8
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||||-.+..++...+|
T Consensus 127 vgVDlGi~~~a~~~~~~~ 144 (227)
T PF01385_consen 127 VGVDLGIKNLATVSSGDG 144 (227)
T ss_pred eeeccccceeeccccccc
Confidence 699999987766554444
No 131
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=39.21 E-value=31 Score=23.71 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.0
Q ss_pred CeeecCCccEEEEEEcCCCceEE
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEI 23 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~i 23 (64)
|-+|.|.|..-|+.+.+| .+.+
T Consensus 131 I~~DmGGTTtDi~~i~~G-~p~~ 152 (318)
T TIGR03123 131 LFVDMGSTTTDIIPIIDG-EVAA 152 (318)
T ss_pred EEEEcCccceeeEEecCC-Eeee
Confidence 468999999999999998 4444
No 132
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.49 E-value=34 Score=25.89 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.6
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeC
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALN 26 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n 26 (64)
|++|.|.|..-++++.+| .+++...
T Consensus 281 i~~DmGGTStDva~i~~G-~pe~~~e 305 (674)
T COG0145 281 IVFDMGGTSTDVALIIDG-EPEISSE 305 (674)
T ss_pred EEEEcCCcceeeeeeecC-cEEeecc
Confidence 578999999999999999 5565544
No 133
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=37.54 E-value=56 Score=23.33 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=19.6
Q ss_pred eeecCCccEEEEEEcCCCceEEEeCC
Q psy4514 2 SVDLGSEWMKVAIVSPGVPMEIALNK 27 (64)
Q Consensus 2 GIDlGt~~s~va~~~~g~~~~iv~n~ 27 (64)
-||+|++.+++-.+++|...+...|+
T Consensus 245 IIDIGGQDsK~I~l~~G~v~dF~MNd 270 (404)
T TIGR03286 245 VIDIGGMDNKAISVWDGIPDNFTMGG 270 (404)
T ss_pred EEEeCCCceEEEEEcCCceeeEEEcC
Confidence 48999999998777777555566665
No 134
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=36.61 E-value=31 Score=23.98 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=16.8
Q ss_pred CeeecCCccEEEEEEcCCC
Q psy4514 1 MSVDLGSEWMKVAIVSPGV 19 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~ 19 (64)
||||=|||-...|++.+++
T Consensus 2 vGiDHGTtgi~f~~~~~~~ 20 (326)
T TIGR03281 2 VGIDHGTTGIRFAIIDGEK 20 (326)
T ss_pred ccccCCCccEEEEEecCCc
Confidence 6999999999999997773
No 135
>PRK00976 hypothetical protein; Provisional
Probab=36.31 E-value=52 Score=22.83 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=15.5
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
||||=|||-...+++.++
T Consensus 4 ~g~dhgt~~~~~~~~~~~ 21 (326)
T PRK00976 4 VGIDHGTTGIRFAIIEGG 21 (326)
T ss_pred EeecCCCccEEEEEEcCC
Confidence 699999999999998554
No 136
>KOG2912|consensus
Probab=36.28 E-value=11 Score=26.64 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=10.4
Q ss_pred eeecCCccEEE
Q psy4514 2 SVDLGSEWMKV 12 (64)
Q Consensus 2 GIDlGt~~s~v 12 (64)
|||.||..||+
T Consensus 106 GiDIgtgasci 116 (419)
T KOG2912|consen 106 GIDIGTGASCI 116 (419)
T ss_pred eeeccCchhhh
Confidence 89999999998
No 137
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=35.90 E-value=22 Score=24.44 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=14.8
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||.|..|.++|.. +|
T Consensus 6 lGiDIGGAntk~a~~-DG 22 (330)
T COG1548 6 LGIDIGGANTKIASS-DG 22 (330)
T ss_pred EEeeccCccchhhhc-cC
Confidence 599999999999994 55
No 138
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=34.52 E-value=34 Score=22.18 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=15.5
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|||+|.++..+++++-.
T Consensus 4 lgvdig~~~i~~~l~dl~ 21 (291)
T PRK05082 4 LAIDIGGTKIAAALVGED 21 (291)
T ss_pred EEEEECCCEEEEEEEcCC
Confidence 589999999999998743
No 139
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=34.22 E-value=31 Score=24.68 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=10.7
Q ss_pred CeeecCCccEEEEE
Q psy4514 1 MSVDLGSEWMKVAI 14 (64)
Q Consensus 1 iGIDlGt~~s~va~ 14 (64)
+|||+||+..-|-+
T Consensus 8 VGIDiGTsTTQvif 21 (473)
T COG4819 8 VGIDIGTSTTQVIF 21 (473)
T ss_pred eeeeccCceeeeee
Confidence 69999998766533
No 140
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=33.61 E-value=1.2e+02 Score=20.62 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=12.9
Q ss_pred CeeecCCccEEEEEE
Q psy4514 1 MSVDLGSEWMKVAIV 15 (64)
Q Consensus 1 iGIDlGt~~s~va~~ 15 (64)
+|||+|.-|.+++.-
T Consensus 5 ~~iDiG~g~tK~~~~ 19 (344)
T PRK13917 5 MALDFGNGFVKGKIN 19 (344)
T ss_pred EEEeccCCeEEEEec
Confidence 489999999999764
No 141
>PRK13329 pantothenate kinase; Reviewed
Probab=32.39 E-value=34 Score=22.44 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=14.0
Q ss_pred eeecCCccEEEEEEc
Q psy4514 2 SVDLGSEWMKVAIVS 16 (64)
Q Consensus 2 GIDlGt~~s~va~~~ 16 (64)
-||.|+|.++.++++
T Consensus 5 liD~GNTriKw~~~~ 19 (249)
T PRK13329 5 AIDVGNTRLKWGLYD 19 (249)
T ss_pred EEEcCcchheeeEec
Confidence 589999999999998
No 142
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=31.67 E-value=94 Score=20.86 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=21.5
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCCCCccc
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTP 34 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g~r~tp 34 (64)
+.||+|+.+...+.++++ .+.=|---.-...+|
T Consensus 170 ~~vniGN~HTlaa~v~~~-rI~GvfEHHT~~l~~ 202 (254)
T PF08735_consen 170 IVVNIGNGHTLAALVKDG-RIYGVFEHHTGMLTP 202 (254)
T ss_pred EEEEeCCccEEEEEEeCC-EEEEEEecccCCCCH
Confidence 468999999999999888 544343333333333
No 143
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=30.81 E-value=88 Score=17.71 Aligned_cols=33 Identities=15% Similarity=-0.031 Sum_probs=27.2
Q ss_pred CCCCccceEEEecCCceEEchhHHhhhhcCCCC
Q psy4514 28 ESKRKTPTLVAFHKGNSGTDICDKLIGCWTPVI 60 (64)
Q Consensus 28 ~g~r~tpS~V~f~~~~r~vG~~Ak~~~~~nP~n 60 (64)
.+-..+|+.+-++.++.++...+......||..
T Consensus 95 ~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~ 127 (132)
T cd02964 95 FKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGA 127 (132)
T ss_pred cCCCCCCEEEEECCCCCEEchhHHHHHHhCccc
Confidence 455778999999877889999999998888753
No 144
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=30.37 E-value=85 Score=19.17 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=14.3
Q ss_pred CeeecCCccEEEEEEcC
Q psy4514 1 MSVDLGSEWMKVAIVSP 17 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~ 17 (64)
++||.|+-|....++..
T Consensus 4 ~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 4 LSIDIGIKNLAYCIIEF 20 (143)
T ss_pred EEEecCCCceeEEEEEc
Confidence 48999999998888763
No 145
>PRK13328 pantothenate kinase; Reviewed
Probab=29.87 E-value=49 Score=21.70 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=14.9
Q ss_pred eeecCCccEEEEEEcCC
Q psy4514 2 SVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 2 GIDlGt~~s~va~~~~g 18 (64)
-||.|+|.++.++++.+
T Consensus 5 liDiGNTriKwa~~~~~ 21 (255)
T PRK13328 5 LIDAGNSRIKWAWADAG 21 (255)
T ss_pred EEEeCccceeEEEEcCC
Confidence 48999999999999754
No 146
>PF08787 Alginate_lyase2: Alginate lyase; InterPro: IPR014895 Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This region forms an all beta fold, which is different to the all alpha fold of IPR008397 from INTERPRO. ; PDB: 1VAV_B 1UAI_A 1J1T_A 2Z42_A 2ZAC_A 2ZAB_A 2ZAA_A 2ZA9_A 2CWS_A.
Probab=28.92 E-value=60 Score=20.95 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=22.1
Q ss_pred eeecCCccEEEEEEcCCCceEEEeCCCCCCc
Q psy4514 2 SVDLGSEWMKVAIVSPGVPMEIALNKESKRK 32 (64)
Q Consensus 2 GIDlGt~~s~va~~~~g~~~~iv~n~~g~r~ 32 (64)
+|+||+.++.-=.+.++ .+.|..|.+++..
T Consensus 160 ~i~LG~~F~y~I~v~~~-~l~V~ing~~~~~ 189 (236)
T PF08787_consen 160 GIPLGEWFSYEIEVSGG-TLTVTINGEGKTT 189 (236)
T ss_dssp EEETT-EEEEEEEEETT-EEEEEETTEEEEE
T ss_pred ceeCCCEEEEEEEEECC-EEEEEEECCcceE
Confidence 68999988877667777 7888888765543
No 147
>KOG1369|consensus
Probab=28.91 E-value=46 Score=24.26 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=13.6
Q ss_pred CeeecCCccEEEEEEc
Q psy4514 1 MSVDLGSEWMKVAIVS 16 (64)
Q Consensus 1 iGIDlGt~~s~va~~~ 16 (64)
+.||||.||-.|..+.
T Consensus 89 lalDLGGTn~Rv~~v~ 104 (474)
T KOG1369|consen 89 LALDLGGTNFRVLLVK 104 (474)
T ss_pred EEEecCCCceEEEEEE
Confidence 3799999999998864
No 148
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=27.70 E-value=52 Score=19.79 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=12.1
Q ss_pred CeeecCCccEEEEEEcC
Q psy4514 1 MSVDLGSEWMKVAIVSP 17 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~ 17 (64)
+|||-|+.++=.|+++.
T Consensus 2 LGIDPgl~~tG~avi~~ 18 (149)
T PF02075_consen 2 LGIDPGLSNTGYAVIEE 18 (149)
T ss_dssp EEEE--SSEEEEEEEEE
T ss_pred EEECCCCCCeeEEEEEe
Confidence 59999999988888743
No 149
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=27.38 E-value=49 Score=25.45 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=14.6
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
||+|+||+++=-||++..
T Consensus 4 LGLDiGt~SvGWAVv~~d 21 (805)
T TIGR01865 4 LGLDIGIASVGWAIVEDD 21 (805)
T ss_pred eEEeecccceeEEEEecc
Confidence 699999988877887644
No 150
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.07 E-value=80 Score=22.28 Aligned_cols=16 Identities=38% Similarity=0.602 Sum_probs=14.2
Q ss_pred CeeecCCccEEEEEEc
Q psy4514 1 MSVDLGSEWMKVAIVS 16 (64)
Q Consensus 1 iGIDlGt~~s~va~~~ 16 (64)
+|||.|++..++...+
T Consensus 13 vGIdI~~~sVKvvqLs 28 (354)
T COG4972 13 VGIDIGSHSVKVVQLS 28 (354)
T ss_pred eeEeeccceEEEEEEc
Confidence 6999999999998876
No 151
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=26.58 E-value=59 Score=22.75 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=15.7
Q ss_pred eeecCCccEEEEEEcC-C
Q psy4514 2 SVDLGSEWMKVAIVSP-G 18 (64)
Q Consensus 2 GIDlGt~~s~va~~~~-g 18 (64)
|||=||....++.+++ |
T Consensus 1 GIDpGT~s~dv~~~dd~g 18 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDDDG 18 (343)
T ss_pred CCCCCCCcEEEEEEccCC
Confidence 7999999999999988 6
No 152
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=26.35 E-value=51 Score=20.31 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=13.6
Q ss_pred CeeecCCccEEEEEEc
Q psy4514 1 MSVDLGSEWMKVAIVS 16 (64)
Q Consensus 1 iGIDlGt~~s~va~~~ 16 (64)
+|||-|++++=.|+++
T Consensus 5 LGIDPgl~~tG~avi~ 20 (164)
T PRK00039 5 LGIDPGLRRTGYGVIE 20 (164)
T ss_pred EEEccccCceeEEEEE
Confidence 5999999998888875
No 153
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=24.81 E-value=1.2e+02 Score=18.61 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=14.5
Q ss_pred CeeecCCccEEEEEEcCCCc
Q psy4514 1 MSVDLGSEWMKVAIVSPGVP 20 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~ 20 (64)
+|||=|+|.-..++--+|..
T Consensus 35 VGiDPG~ttgiAildL~G~~ 54 (138)
T PF04312_consen 35 VGIDPGTTTGIAILDLDGEL 54 (138)
T ss_pred EEECCCceeEEEEEecCCcE
Confidence 59999998766666567733
No 154
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=24.67 E-value=32 Score=24.72 Aligned_cols=8 Identities=38% Similarity=0.937 Sum_probs=5.5
Q ss_pred CeeecCCc
Q psy4514 1 MSVDLGSE 8 (64)
Q Consensus 1 iGIDlGt~ 8 (64)
+.||||||
T Consensus 196 iSiDFGTT 203 (445)
T TIGR03285 196 ISIDFGTT 203 (445)
T ss_pred EEeecccc
Confidence 35778876
No 155
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.61 E-value=60 Score=20.69 Aligned_cols=21 Identities=33% Similarity=0.281 Sum_probs=15.4
Q ss_pred CCCCccceEEEecCCceEEch
Q psy4514 28 ESKRKTPTLVAFHKGNSGTDI 48 (64)
Q Consensus 28 ~g~r~tpS~V~f~~~~r~vG~ 48 (64)
.+-|.||+.|.|+..+..+++
T Consensus 111 f~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 111 FAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred hccccCceEEEEcCCCCEEEe
Confidence 467999999999865445443
No 156
>PHA02278 thioredoxin-like protein
Probab=24.40 E-value=78 Score=17.74 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=16.9
Q ss_pred CCCCCccceEEEecCC---ceEEchh
Q psy4514 27 KESKRKTPTLVAFHKG---NSGTDIC 49 (64)
Q Consensus 27 ~~g~r~tpS~V~f~~~---~r~vG~~ 49 (64)
+..=+..|+.+.|.++ .|+.|..
T Consensus 67 ~~~I~~iPT~i~fk~G~~v~~~~G~~ 92 (103)
T PHA02278 67 LFDIMSTPVLIGYKDGQLVKKYEDQV 92 (103)
T ss_pred HCCCccccEEEEEECCEEEEEEeCCC
Confidence 4566789999999876 4567744
No 157
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=23.85 E-value=34 Score=24.64 Aligned_cols=8 Identities=38% Similarity=0.937 Sum_probs=5.0
Q ss_pred CeeecCCc
Q psy4514 1 MSVDLGSE 8 (64)
Q Consensus 1 iGIDlGt~ 8 (64)
+.||||||
T Consensus 199 iSiDFGTT 206 (448)
T PF09887_consen 199 ISIDFGTT 206 (448)
T ss_pred eEeecccc
Confidence 35677775
No 158
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=23.83 E-value=98 Score=20.88 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=14.7
Q ss_pred ecCCccEEEEEEcC-CCceEEEeCCCCCCc
Q psy4514 4 DLGSEWMKVAIVSP-GVPMEIALNKESKRK 32 (64)
Q Consensus 4 DlGt~~s~va~~~~-g~~~~iv~n~~g~r~ 32 (64)
|-||+|..+-++++ |.-++....+.|-+.
T Consensus 1 DWGTSnlR~~l~~~~g~vl~~~~~~~Gi~~ 30 (287)
T PF05035_consen 1 DWGTSNLRAWLMDEDGQVLAERSSPVGILN 30 (287)
T ss_dssp EE-SS-EEEEEE-CTTEEEEEEEES--CCH
T ss_pred CCchhhhhhheecCCCcEEeeecCCcChhh
Confidence 78999999999954 422333444445443
No 159
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=23.05 E-value=1.2e+02 Score=21.03 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=18.7
Q ss_pred CeeecCCccEEEEEEcCCCceEEEeCCCC
Q psy4514 1 MSVDLGSEWMKVAIVSPGVPMEIALNKES 29 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g~~~~iv~n~~g 29 (64)
|.||.|||+..+=+++.. . .++..+++
T Consensus 8 i~iDWGTT~~R~wL~~~d-g-~~l~~r~~ 34 (306)
T COG3734 8 IAIDWGTTNLRAWLVRGD-G-AVLAERRS 34 (306)
T ss_pred EEEecCCccEEEEEEcCC-c-ceeeeecc
Confidence 469999999999888655 2 34444433
No 160
>PRK13327 pantothenate kinase; Reviewed
Probab=22.93 E-value=55 Score=21.45 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=15.0
Q ss_pred eeecCCccEEEEEEcCC
Q psy4514 2 SVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 2 GIDlGt~~s~va~~~~g 18 (64)
-||.|+|..+-++++++
T Consensus 5 liD~GNSriKwa~~~~~ 21 (242)
T PRK13327 5 LFDLGNSRFKYAPLHGG 21 (242)
T ss_pred eEEcCcchhheEEecCC
Confidence 48999999999999865
No 161
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=22.48 E-value=68 Score=21.78 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=14.7
Q ss_pred eeecCCccEEEEEEcCC
Q psy4514 2 SVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 2 GIDlGt~~s~va~~~~g 18 (64)
.=|+|.||+.+|++...
T Consensus 2 v~DIGGTn~Rlal~~~~ 18 (316)
T PF02685_consen 2 VADIGGTNTRLALAEPD 18 (316)
T ss_dssp EEEEETTEEEEEEEECT
T ss_pred eEEeCcccEEEEEEEcC
Confidence 35999999999999776
No 162
>PRK03011 butyrate kinase; Provisional
Probab=22.44 E-value=68 Score=22.23 Aligned_cols=17 Identities=24% Similarity=0.342 Sum_probs=15.2
Q ss_pred eeecCCccEEEEEEcCC
Q psy4514 2 SVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 2 GIDlGt~~s~va~~~~g 18 (64)
-|.-|+|..++|++++.
T Consensus 6 ~inpgststk~a~~~~~ 22 (358)
T PRK03011 6 VINPGSTSTKIAVFEDE 22 (358)
T ss_pred EEcCCCchheEEEEcCC
Confidence 58899999999999877
No 163
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=20.78 E-value=1.2e+02 Score=20.03 Aligned_cols=24 Identities=25% Similarity=0.652 Sum_probs=17.2
Q ss_pred eeecCCccEEEEEEc--CCCceEEEeC
Q psy4514 2 SVDLGSEWMKVAIVS--PGVPMEIALN 26 (64)
Q Consensus 2 GIDlGt~~s~va~~~--~g~~~~iv~n 26 (64)
.||+|+-.+.+.+++ ++ .++++..
T Consensus 4 vIDiGSNsirl~I~~~~~~-~~~~l~~ 29 (300)
T TIGR03706 4 AIDIGSNSVRLVIARGVEG-SLQVLFN 29 (300)
T ss_pred EEEecCCeeeEEEEEecCC-cEEEhhh
Confidence 699999988888875 34 5555543
No 164
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=20.72 E-value=1.1e+02 Score=17.62 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=13.4
Q ss_pred ccceEEEecCC---ceEEch
Q psy4514 32 KTPTLVAFHKG---NSGTDI 48 (64)
Q Consensus 32 ~tpS~V~f~~~---~r~vG~ 48 (64)
.+|+++.|.++ .+++|.
T Consensus 90 ~~PT~v~~k~Gk~v~~~~G~ 109 (122)
T TIGR01295 90 GTPTFVHITDGKQVSVRCGS 109 (122)
T ss_pred CCCEEEEEeCCeEEEEEeCC
Confidence 49999999875 567784
No 165
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=20.59 E-value=1.1e+02 Score=19.70 Aligned_cols=26 Identities=8% Similarity=0.173 Sum_probs=11.5
Q ss_pred CeeecC----CccEEEEEE--cCCCceEEEeC
Q psy4514 1 MSVDLG----SEWMKVAIV--SPGVPMEIALN 26 (64)
Q Consensus 1 iGIDlG----t~~s~va~~--~~g~~~~iv~n 26 (64)
+|+|+| ..++++.++ ..+....++..
T Consensus 229 ~g~D~a~~~~~d~~~~~~~~~~~~~~~~~~~~ 260 (384)
T PF03237_consen 229 IGVDPAGGKGGDYTAIVVWEIVDDDGFYVVDD 260 (384)
T ss_dssp EEEE--SSCTTB-EEEEEE-E-SSSSEEEEEE
T ss_pred EEEECCCCCccCCEEEEEEccccccceEEeee
Confidence 488999 445555555 22224444443
No 166
>KOG2531|consensus
Probab=20.30 E-value=95 Score=23.04 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=14.2
Q ss_pred CeeecCCccEEEEEEcCC
Q psy4514 1 MSVDLGSEWMKVAIVSPG 18 (64)
Q Consensus 1 iGIDlGt~~s~va~~~~g 18 (64)
+|+||+|+-.++-+.+..
T Consensus 12 LG~DlSTQqlKaviids~ 29 (545)
T KOG2531|consen 12 LGFDLSTQQLKAVIIDSN 29 (545)
T ss_pred eeeecccceeEEEEEcCC
Confidence 599999999887666544
Done!