RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4514
(64 letters)
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 31.9 bits (73), Expect = 0.005
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 3 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF 39
+DLG+ +A+ +I +N+ S R TP++V F
Sbjct: 7 LDLGNNNSVLAVARNRGI-DIVVNEVSNRSTPSVVGF 42
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus
kaustophilus HTA426}
Length = 509
Score = 30.3 bits (69), Expect = 0.022
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 3 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG 42
+DLG+ VA++ G I N E R TP++VAF G
Sbjct: 7 IDLGTTNSCVAVLEGGEVKVIP-NPEGNRTTPSVVAFKNG 45
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide
binding, protein folding, acetylation, ATP-binding,
cell inner membrane; NMR {Escherichia coli}
Length = 605
Score = 29.9 bits (68), Expect = 0.029
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 3 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGN 43
+DLG+ VAI+ P + N E R TP+++A+ +
Sbjct: 7 IDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDG 46
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 29.8 bits (68), Expect = 0.036
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 3 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGN 43
+DLG+ VAI+ P + N E R TP+++A+ +
Sbjct: 7 IDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDG 46
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.4 bits (55), Expect = 1.1
Identities = 5/7 (71%), Positives = 5/7 (71%)
Query: 3 VDLGSEW 9
VD SEW
Sbjct: 57 VDTRSEW 63
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 24.8 bits (55), Expect = 2.0
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 4 DLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIG 54
DLG+ + VA++ G EI N++ R TP+ VAF TD ++LIG
Sbjct: 24 DLGTTYSCVAVMKNGKT-EILANEQGNRITPSYVAF------TD-DERLIG 66
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 24.4 bits (54), Expect = 2.6
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 4 DLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIG 54
DLG+ + V + G EI N + R TP+ VAF TD ++LIG
Sbjct: 10 DLGTTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAF------TD-TERLIG 52
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 24.2 bits (53), Expect = 3.2
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 1 MSVDLGSEWMKVAIVSPG 18
++VDL + + V PG
Sbjct: 186 LAVDLKDDNVLVVNFCPG 203
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 24.0 bits (53), Expect = 3.4
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 4 DLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGNSGTDICDKLIG 54
DLG+ + V + G EI N + R TP+ VAF TD ++LIG
Sbjct: 29 DLGTTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAF------TD-TERLIG 71
>2bf1_A SIV GP120, exterior membrane glycoprotein GP120; virus protein,
envelope glycoprotein, AIDS, coat protein; HET: NAG BMA
NDG FUC MAN; 4.0A {Simian immunodeficiency virus} PDB:
3fus_A*
Length = 316
Score = 23.7 bits (52), Expect = 4.8
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 43 NSGTDICDKLIGCWTPVITQ 62
+ +C C T +I +
Sbjct: 39 VKLSPLCIGAGHCNTSIIQE 58
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 23.5 bits (51), Expect = 6.7
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 1 MSVDLGSEWMKVAIVSPG 18
+SVDL + + + PG
Sbjct: 203 LSVDLYPQRIMCVSLHPG 220
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.415
Gapped
Lambda K H
0.267 0.0835 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 937,806
Number of extensions: 38474
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 12
Length of query: 64
Length of database: 6,701,793
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,724,558
Effective search space: 166012182
Effective search space used: 166012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.2 bits)