RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4514
         (64 letters)



>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
          fragment {Cow (Bos taurus) [TaxId: 9913]}
          Length = 185

 Score = 42.7 bits (100), Expect = 3e-07
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 3  VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGN 43
          +DLGS +  V +   G   EI  N +  R TP+ VAF    
Sbjct: 6  IDLGSTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTE 45


>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
          fragment {Escherichia coli, gene dnaK [TaxId: 562]}
          Length = 183

 Score = 35.0 bits (80), Expect = 1e-04
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 3  VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGN 43
          +DLG+    VAI+    P  +  N E  R TP+++A+ +  
Sbjct: 5  IDLGTTNSCVAIMDGTTP-RVLENAEGDRTTPSIIAYTQDG 44


>d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme,
          C-terminal donain {Aeropyrum pernix [TaxId: 56636]}
          Length = 260

 Score = 22.9 bits (47), Expect = 4.3
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 19 VPMEIALNKESKRKTPTLVAFHKG 42
          VP  +  +  +    PT+V  H G
Sbjct: 25 VPTYVLESGRAPTPGPTVVLVHGG 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.415 

Gapped
Lambda     K      H
   0.267   0.0354    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 233,423
Number of extensions: 7373
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 3
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.9 bits)