BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4515
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D89|A Chain A, Solution Structure Of The Ch Domain From Human Eh Domain
Binding Protein 1
Length = 119
Score = 72.4 bits (176), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 61 RGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
+++L +WC+ VT+ Y GV++ N T+SWR+GL+FCA++HHFRPDLI Y
Sbjct: 9 NASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDY 57
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 31/35 (88%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
VT+ Y GV++ N T+SWR+GL+FCA++HHFRPDL+
Sbjct: 21 VTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLI 55
>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin At
1.1 Angstrom Resolution
Length = 109
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 59 ERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
++ AL +WC+ T GYP V + N T+SWRDG+AF ALIH RPDLI
Sbjct: 1 KKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI 49
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T GYP V + N T+SWRDG+AF ALIH RPDL+
Sbjct: 16 TAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI 49
>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin
Length = 108
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 60 RRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
+ AL +WC+ T GYP V + N T+SWRDG+AF ALIH RPDLI
Sbjct: 1 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI 48
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T GYP V + N T+SWRDG+AF ALIH RPDL+
Sbjct: 15 TAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI 48
>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human
Spectrin Beta Chain, Brain 2
Length = 127
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 58 GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
G AL +WC+ T GYP V V N T+SWRDGLAF A++H RPDL+
Sbjct: 4 GSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLL 53
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T GYP V V N T+SWRDGLAF A++H RPDL+
Sbjct: 20 TAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLL 53
>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At
2.2a Resolution
Length = 250
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%)
Query: 50 FDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
F D + E + L +WC+R T Y V V N +SW+DGLA CALIH RPDLI Y
Sbjct: 125 FAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDY 184
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T Y V V N +SW+DGLA CALIH RPDL+
Sbjct: 149 TAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLI 182
>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
pdb|1WKU|B Chain B, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
Length = 254
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%)
Query: 50 FDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
F D + E + L +WC+R T Y V V N +SW+DGLA CALIH RPDLI Y
Sbjct: 129 FAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDY 188
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T Y V V N +SW+DGLA CALIH RPDL+
Sbjct: 153 TAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLI 186
>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3
Protein
Length = 121
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 58 GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
G R +K L WC+R T+GY GV V ++T SW+ GLA CA+IH +RPDLI
Sbjct: 7 GVARSSKLLG-WCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLI 55
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T+GY GV V ++T SW+ GLA CA+IH +RPDL+
Sbjct: 22 TDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLI 55
>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2
Length = 121
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 58 GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
G+ R +K L WC++ TEGY V V ++T+SWR GLA CA+IH FRP+LI +
Sbjct: 7 GDIRPSKLL-TWCQQQTEGYQHVNVTDLTTSWRSGLALCAIIHRFRPELINF 57
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
TEGY V V ++T+SWR GLA CA+IH FRP+L+
Sbjct: 22 TEGYQHVNVTDLTTSWRSGLALCAIIHRFRPELI 55
>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.7 Angstrom Resolution
pdb|2EYN|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.8 Angstrom Resolution
Length = 234
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 34/60 (56%)
Query: 50 FDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
F D + E + L +WC+R T Y V + N SW+DGL FCALIH RP+LI Y
Sbjct: 109 FAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDY 168
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T Y V + N SW+DGL FCALIH RP+L+
Sbjct: 133 TAPYKNVNIQNFHISWKDGLGFCALIHRHRPELI 166
>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
pdb|2R0O|B Chain B, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
Length = 237
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%)
Query: 50 FDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
F D + E + L +WC+R T Y V V N SW+DGLAF ALIH RP+LI Y
Sbjct: 114 FAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIEY 173
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T Y V V N SW+DGLAF ALIH RP+L+
Sbjct: 138 TAPYKNVNVQNFHISWKDGLAFNALIHRHRPELI 171
>pdb|2DK9|A Chain A, Solution Structure Of Calponin Homology Domain Of Human
Mical-1
Length = 118
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 57 MGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
MG + L WC+ T GYPGV V +++SSW DGLA CAL++ +P L+
Sbjct: 9 MGSAGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLL 59
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T GYPGV V +++SSW DGLA CAL++ +P L+
Sbjct: 26 TAGYPGVHVSDLSSSWADGLALCALVYRLQPGLL 59
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 58.2 bits (139), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 33/60 (55%)
Query: 50 FDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
F D + E + L +W +R T Y V + N SW+DGL FCALIH RP+LI Y
Sbjct: 110 FAIQDISVEETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDY 169
Score = 45.4 bits (106), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T Y V + N SW+DGL FCALIH RP+L+
Sbjct: 134 TAPYKNVNIQNFHISWKDGLGFCALIHRHRPELI 167
>pdb|1WYL|A Chain A, Solution Structure Of The Ch Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 116
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 69 WCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
WC+ T GYPGV V +++SSW DGLA CAL++ +P L+
Sbjct: 15 WCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLL 53
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T GYPGV V +++SSW DGLA CAL++ +P L+
Sbjct: 20 TAGYPGVHVSDLSSSWADGLALCALVYRLQPGLL 53
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|B Chain B, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|C Chain C, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|D Chain D, N-Terminal Actin-Binding Domain Of Human Dystrophin
Length = 246
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%)
Query: 57 MGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 106
+ + K L W R+ T YP V V N T+SW DGLA ALIH RPDL
Sbjct: 131 LQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDL 180
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 22/33 (66%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
T YP V V N T+SW DGLA ALIH RPDL
Sbjct: 148 TRNYPQVNVINFTTSWSDGLALNALIHSHRPDL 180
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 62 GTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
+ L +W +R+ EGY G+R DN TSSWRDG F A+IH +P LI
Sbjct: 137 AKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLI 182
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
+ EGY G+R DN TSSWRDG F A+IH +P L+
Sbjct: 148 MVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLI 182
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 62 GTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
+ L +W +R+ EGY G+R DN TSSWRDG F A+IH +P LI
Sbjct: 190 AKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLI 235
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
+ EGY G+R DN TSSWRDG F A+IH +P L+
Sbjct: 201 MVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLI 235
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
Length = 245
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 62 GTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
+ L +W +R+ EGY G+R DN T+SWRDG F A+IH +P LI
Sbjct: 134 AKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLI 179
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
+ EGY G+R DN T+SWRDG F A+IH +P L+
Sbjct: 145 MVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLI 179
>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin
Splice Isoform L2
Length = 128
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 69 WCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
WCR T GY V + N +SSW DG+AFCAL+H+F P+ Y
Sbjct: 15 WCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDY 55
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPD 147
T GY V + N +SSW DG+AFCAL+H+F P+
Sbjct: 20 TRGYEHVDIQNFSSSWSDGMAFCALVHNFFPE 51
>pdb|2JV9|A Chain A, The Solution Structure Of Calponin Homology Domain From
Smoothelin-Like 1
pdb|2K3S|A Chain A, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
Length = 119
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 62 GTKALEM-WCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYATFFVTEGYP 120
G+K + + WCR +T Y V + N +SSW G+AFCALIH F P+ Y E P
Sbjct: 4 GSKNMLLEWCRAMTRNYEHVDIQNFSSSWSSGMAFCALIHKFFPEAFDY------AELDP 57
Query: 121 GVRVDNMTSSWR--DGLAFCALI 141
R N T ++ + LA CA +
Sbjct: 58 AKRRHNFTLAFSTAEKLADCAQL 80
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPD 147
+T Y V + N +SSW G+AFCALIH F P+
Sbjct: 16 MTRNYEHVDIQNFSSSWSSGMAFCALIHKFFPE 48
>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin
pdb|1BHD|B Chain B, Second Calponin Homology Domain From Utrophin
Length = 118
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 56 DMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 106
D+ + K L W R+ T Y V V N T+SW DGLAF A++H +PDL
Sbjct: 3 DLQQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDL 53
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
T Y V V N T+SW DGLAF A++H +PDL
Sbjct: 21 TRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDL 53
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin
pdb|1QAG|B Chain B, Actin Binding Region Of The Dystrophin Homologue Utrophin
Length = 226
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 56 DMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 106
D+ + K L W R+ T Y V V N T+SW DGLAF A++H +PDL
Sbjct: 116 DLQQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDL 166
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
T Y V V N T+SW DGLAF A++H +PDL
Sbjct: 134 TRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDL 166
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 29.6 bits (65), Expect = 0.61, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 28 DMGERRGTKALEMWCQCNSDPCFDTL 53
DM LE++CQ S+PCF+TL
Sbjct: 798 DMQSTSENMFLELFCQIISEPCFNTL 823
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 29.6 bits (65), Expect = 0.61, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 28 DMGERRGTKALEMWCQCNSDPCFDTL 53
DM LE++CQ S+PCF+TL
Sbjct: 798 DMQSTSENMFLELFCQIISEPCFNTL 823
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 29.6 bits (65), Expect = 0.61, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 28 DMGERRGTKALEMWCQCNSDPCFDTL 53
DM LE++CQ S+PCF+TL
Sbjct: 757 DMQSTSENMFLELFCQIISEPCFNTL 782
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 29.6 bits (65), Expect = 0.61, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 28 DMGERRGTKALEMWCQCNSDPCFDTL 53
DM LE++CQ S+PCF+TL
Sbjct: 769 DMQSTSENMFLELFCQIISEPCFNTL 794
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 29.6 bits (65), Expect = 0.61, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 28 DMGERRGTKALEMWCQCNSDPCFDTL 53
DM LE++CQ S+PCF+TL
Sbjct: 769 DMQSTSENMFLELFCQIISEPCFNTL 794
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 146
Score = 29.6 bits (65), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 1 MGERRGTKALEMWCRRAPDPCFDTLNFDMGERRGTKALEMWCQCNSDPCFDTLDFDMGER 60
+G+R E+W DP + +F GT AL++ P D LD+++GER
Sbjct: 48 LGKRARIPLTEVWIPILADPAVEK-DF------GTGALKVT------PAHDPLDYEIGER 94
Query: 61 RGTKALEM 68
G K + +
Sbjct: 95 HGLKPVSV 102
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 147
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 1 MGERRGTKALEMWCRRAPDPCFDTLNFDMGERRGTKALEMWCQCNSDPCFDTLDFDMGER 60
+G+R E+W DP + +F GT AL++ P D LD+++GER
Sbjct: 48 LGKRARIPLTEVWIPILADPAVEK-DF------GTGALKVT------PAHDPLDYEIGER 94
Query: 61 RGTKALEM 68
G K + +
Sbjct: 95 HGLKPVSV 102
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 1 MGERRGTKALEMWCRRAPDPCFDTLNFDMGERRGTKALEMWCQCNSDPCFDTLDFDMGER 60
+G+R E+W DP + +F GT AL++ P D LD+++GER
Sbjct: 239 LGKRARIPLTEVWIPILADPAVEK-DF------GTGALKV------TPAHDPLDYEIGER 285
Query: 61 RGTKALEM 68
G K + +
Sbjct: 286 HGLKPVSV 293
>pdb|2XRY|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei
pdb|2XRZ|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
pdb|2XRZ|B Chain B, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
Length = 482
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 34 GTKAL--EMWCQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVD---NMTSS 88
G KAL E N DP F+ F+ GE+ K +E + + Y +R D NM S+
Sbjct: 225 GVKALLPERALLKNKDPLFEPWHFEPGEKAAKKVMESFIADRLDSYGALRNDPTKNMLSN 284
Query: 89 WRDGLAF 95
L F
Sbjct: 285 LSPYLHF 291
>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin
Length = 108
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 64 KALEMWCRRVTEGYPGVRV-DNMTSSWRDGLAFCALIHHFRP 104
+ L +W EG G R+ DN +DG+ C LI+ +P
Sbjct: 6 RQLRVWI----EGATGRRIGDNFMDGLKDGVILCELINKLQP 43
>pdb|3S9X|A Chain A, High Resolution Crystal Structure Of Asch Domain From
Lactobacillus Crispatus Jv V101
Length = 159
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 22 FDTLNFDMGERRGTKALEMWC--QCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPG 79
+++ ++ E+ + + + +C + N++ C D + GE+R + +LE W + E P
Sbjct: 18 LSSVSREVSEKYTSFSADYFCADEYNANVCADLIL--RGEKRASCSLEYWYSQKGELXPQ 75
Query: 80 VRVDNMTSSWRDGLAFCAL 98
V + ++W DG C +
Sbjct: 76 VGHLQVVTNW-DGKPICII 93
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin
Binding Domain At 1.95 Angstroms Resolution
Length = 245
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 72 RVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 106
R+ P + + N +W+DG A AL+ P L
Sbjct: 151 RIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGL 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.142 0.502
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,266,782
Number of Sequences: 62578
Number of extensions: 210236
Number of successful extensions: 440
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 71
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)