Query psy4515
Match_columns 149
No_of_seqs 154 out of 772
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 19:08:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 99.9 2.2E-27 4.9E-32 225.8 4.8 135 7-144 110-266 (2473)
2 KOG0035|consensus 99.7 1.4E-17 3.1E-22 153.4 2.4 135 6-145 89-244 (890)
3 COG5069 SAC6 Ca2+-binding acti 99.3 4.4E-13 9.5E-18 117.2 -0.3 102 6-111 72-176 (612)
4 KOG0517|consensus 99.3 2.6E-12 5.5E-17 124.4 3.0 88 61-149 48-213 (2473)
5 smart00033 CH Calponin homolog 98.8 2.6E-09 5.6E-14 73.9 1.6 48 63-110 2-49 (103)
6 cd00014 CH Calponin homology d 98.6 2.4E-08 5.3E-13 69.7 1.6 50 62-111 2-51 (107)
7 PF00307 CH: Calponin homology 98.5 1.2E-07 2.5E-12 66.2 4.2 50 63-112 1-51 (108)
8 PF11971 CAMSAP_CH: CAMSAP CH 98.3 1.3E-07 2.9E-12 65.7 -0.6 42 69-111 1-42 (85)
9 KOG0035|consensus 98.2 3.5E-07 7.7E-12 85.4 1.6 38 112-149 151-188 (890)
10 COG5069 SAC6 Ca2+-binding acti 97.7 1.3E-05 2.8E-10 71.0 0.8 37 113-149 135-172 (612)
11 PF11971 CAMSAP_CH: CAMSAP CH 97.2 0.00018 3.8E-09 50.0 1.6 32 118-149 7-38 (85)
12 smart00033 CH Calponin homolog 96.0 0.0021 4.6E-08 44.0 0.6 34 116-149 13-46 (103)
13 cd00014 CH Calponin homology d 95.1 0.0064 1.4E-07 42.0 0.1 32 118-149 16-47 (107)
14 PF00307 CH: Calponin homology 94.7 0.031 6.7E-07 38.5 2.8 30 120-149 17-46 (108)
15 KOG0046|consensus 94.5 0.063 1.4E-06 48.5 4.8 89 59-148 262-368 (627)
16 PF06294 DUF1042: Domain of Un 92.0 0.057 1.2E-06 41.4 0.6 43 66-111 1-43 (158)
17 KOG0046|consensus 62.2 8.8 0.00019 35.2 3.4 49 63-111 511-561 (627)
18 KOG2046|consensus 57.0 8.2 0.00018 30.8 2.0 44 63-107 27-70 (193)
19 KOG3631|consensus 47.3 16 0.00035 31.0 2.4 33 63-96 259-291 (365)
20 COG5199 SCP1 Calponin [Cytoske 28.3 35 0.00076 26.5 1.4 49 62-112 14-63 (178)
21 KOG0518|consensus 26.5 42 0.00092 33.2 1.9 30 78-107 160-189 (1113)
22 PF06842 DUF1242: Protein of u 23.9 46 0.00099 19.5 1.0 12 138-149 12-23 (36)
No 1
>KOG0517|consensus
Probab=99.93 E-value=2.2e-27 Score=225.82 Aligned_cols=135 Identities=30% Similarity=0.454 Sum_probs=112.9
Q ss_pred chhhhhhhccCCCcccccccccccccccccee--eehh----hccCCCccccccccccccchHHHHHHHHHHhhCCCCCe
Q psy4515 7 TKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWC----QCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGV 80 (149)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~----~~~~~~~~~~~~~~~~~~~~k~~LL~W~q~~~~~y~~v 80 (149)
+|||-|+.-..+-.-.+.+ .+|+++|--.+ +||+ +.|++|+++++|.. .++++|++||+|||++|+|||||
T Consensus 110 dKaLqFLkeqkVhLEniGs--hDIVDGN~rL~LGLIWTIILRFQIq~I~ie~edn~-E~rSAKDALLLWCQmKTAGYpnV 186 (2473)
T KOG0517|consen 110 DKALQFLKEQKVHLENIGS--HDIVDGNHRLILGLIWTIILRFQIQDISIETEDNR-ETRSAKDALLLWCQMKTAGYPNV 186 (2473)
T ss_pred HHHHHHHHhcccccccCCc--ccccCCcchhhHHHHHHHHHheeeeeeEeecccch-hhhhHHHHHHHHHHhhccCCCCc
Confidence 6888888776666666655 45999998544 9999 67889999987776 77889999999999999999999
Q ss_pred eecCCCcccccchhhhhhhhccCCCccCccc------------hhcccc---CCC-ccccCCCCCcchhhhHHHHHHhhh
Q psy4515 81 RVDNMTSSWRDGLAFCALIHHFRPDLIFYYA------------TFFVTE---GYP-GVRVDNMTSSWRDGLAFCALIHHF 144 (149)
Q Consensus 81 ~v~nf~~sw~dG~a~~Alih~~rP~lid~~~------------~~~vte---g~p-~V~v~nfs~sw~dgla~~ali~~~ 144 (149)
+|+|||+|||||+||+||||++||||+||++ +|.+++ |++ -++.+|....-+|..++++|+..|
T Consensus 187 NI~nFTtSWRdGLaFNALIHkHRPDLvDf~~L~k~na~~NL~~AFdvAE~~LGia~LLDpEDV~v~~PDEKSIITYV~~Y 266 (2473)
T KOG0517|consen 187 NITNFTTSWRDGLAFNALIHKHRPDLVDFDKLKKSNALYNLQHAFDVAEQELGIAKLLDPEDVNVEQPDEKSIITYVVTY 266 (2473)
T ss_pred ccccCccchhcchhHHHHHHhcCcchhhhcccCCCchhhHHHHHHHHHHHHcCchhcCCHhhcCccCCCcchHHHHHHHH
Confidence 9999999999999999999999999999997 577777 443 347888877778888877777544
No 2
>KOG0035|consensus
Probab=99.67 E-value=1.4e-17 Score=153.35 Aligned_cols=135 Identities=30% Similarity=0.484 Sum_probs=111.5
Q ss_pred cchhhhhhhccCCCcccccccccccccccccee--eehhhccCCCcccccccccc-ccchHHHHHHHHHHhhCCCCCeee
Q psy4515 6 GTKALEMWCRRAPDPCFDTLNFDMGERRGTKAL--EMWCQCNSDPCFDTLDFDMG-ERRGTKALEMWCRRVTEGYPGVRV 82 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~-~~~~k~~LL~W~q~~~~~y~~v~v 82 (149)
..+||++....+.+.+.+.+.. +.++|+++. .+|+++.. +.++++... +.++++.||+|||++|++|.+++|
T Consensus 89 ~~~~l~~~~sk~v~~~~iga~e--ivd~n~~~~l~~i~tlilr---~~i~~is~~~e~~a~egllLwcq~~Ta~y~~v~v 163 (890)
T KOG0035|consen 89 VNKALVFIESKGVKLVSIGAEE--IVDGNLKLTLGLIWTLILR---FAIQDISVECELSAKEGLLLWCQRKTAPYSNVNV 163 (890)
T ss_pred ccceEEEeccccccccccchhh--hcCcchhhhhHHHHHhhcc---ccccchhhhcchhhhhhhhhheecccCCcccccc
Confidence 4689999999999999999888 888888666 78876665 345666665 778899999999999999999999
Q ss_pred cCCCcccccchhhhhhhhccCCCccC-ccc------------hhccccCC---C-ccccCCCCC-cchhhhHHHHHHhhh
Q psy4515 83 DNMTSSWRDGLAFCALIHHFRPDLIF-YYA------------TFFVTEGY---P-GVRVDNMTS-SWRDGLAFCALIHHF 144 (149)
Q Consensus 83 ~nf~~sw~dG~a~~Alih~~rP~lid-~~~------------~~~vteg~---p-~V~v~nfs~-sw~dgla~~ali~~~ 144 (149)
.||+.||+||++|||+||++||+++| |+. ++.+++.+ | -++.+|+.. +-+|.++.++|+..+
T Consensus 164 ~nF~~sw~~gl~f~A~ih~~Rpdli~~y~~lt~~~~~~n~~~A~~iAek~l~i~r~ld~ed~~~~~~pde~aimtyv~~~ 243 (890)
T KOG0035|consen 164 QNFHTSWKDGLAFCALIHRHRPDLIDQYDKLTKQDPVENLNLAFDIAEKFLGIPRLLDAEDIVEAAIPDEKAIMTYVSSY 243 (890)
T ss_pred ccceecccchHHHHHHHHhcChhhhhhhhhcCccchhHHhhhhhhhhhhcCCcccccCccccccCCCCchhhhhhhhhhc
Confidence 99999999999999999999999999 876 56677643 2 236666554 478999999998766
Q ss_pred C
Q psy4515 145 R 145 (149)
Q Consensus 145 r 145 (149)
+
T Consensus 244 ~ 244 (890)
T KOG0035|consen 244 Y 244 (890)
T ss_pred c
Confidence 5
No 3
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=99.28 E-value=4.4e-13 Score=117.21 Aligned_cols=102 Identities=30% Similarity=0.397 Sum_probs=76.0
Q ss_pred cchhhhhhhccCCCccccccccccccccccce-e-eehhhccCCCccccccccccccchHHHHHHHHHHhhCCC-CCeee
Q psy4515 6 GTKALEMWCRRAPDPCFDTLNFDMGERRGTKA-L-EMWCQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGY-PGVRV 82 (149)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~w~~~~~~~~~~~~~~~~~~~~~k~~LL~W~q~~~~~y-~~v~v 82 (149)
-|++||+....+.+.. -...-+ +++++.+. + +||+.+.+...-++.. +++-+.+..+++||++.+++| |.+.+
T Consensus 72 vs~~le~ik~kg~~l~-Nigp~d-ivdGn~klilGliw~lisr~tia~inE--egelt~~~~lllwc~~~t~~y~p~vd~ 147 (612)
T COG5069 72 VSGRLEFIKGKGVKLF-NIGPQD-IVDGNPKLILGLIWSLISRLTIATINE--EGELTKHINLLLWCDEDTGGYKPEVDT 147 (612)
T ss_pred cccceeeeccCCceee-eeCccc-cccCchhhhheeeeeeeehhhhhcccc--hhhHHhhhhhheeccccccCcCCCccH
Confidence 3688999998885443 333333 67777755 3 7777665533323322 234667788999999999998 55999
Q ss_pred cCCCcccccchhhhhhhhccCCCccCccc
Q psy4515 83 DNMTSSWRDGLAFCALIHHFRPDLIFYYA 111 (149)
Q Consensus 83 ~nf~~sw~dG~a~~Alih~~rP~lid~~~ 111 (149)
.+|+.|||||+|||||||.+|||.+|+.-
T Consensus 148 ~df~rswrdGLaf~aLIh~~rPDtld~n~ 176 (612)
T COG5069 148 FDFFRSWRDGLAFSALIHDSRPDTLDPNV 176 (612)
T ss_pred HHHHHHhhhhHHHHHHHhhcCCcccCccc
Confidence 99999999999999999999999998653
No 4
>KOG0517|consensus
Probab=99.25 E-value=2.6e-12 Score=124.41 Aligned_cols=88 Identities=34% Similarity=0.619 Sum_probs=69.8
Q ss_pred chHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCcc--------------Cccc---------------
Q psy4515 61 RGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI--------------FYYA--------------- 111 (149)
Q Consensus 61 ~~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~li--------------d~~~--------------- 111 (149)
-+||+..+||+....+ .++.|.|+=++-+||+.+.-|+.-..-+.+ |.++
T Consensus 48 vQKKTFTKWvNShL~r-v~c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRMRIH~LENvdKaLqFLkeqkVhLEni 126 (2473)
T KOG0517|consen 48 VQKKTFTKWVNSHLAR-VSCRIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRMRIHCLENVDKALQFLKEQKVHLENI 126 (2473)
T ss_pred HHHHhHHHHHHHHHHH-hcchhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCceeehhHhhhHHHHHHHHhcccccccC
Confidence 3589999999999977 489999999999999986655532111111 1110
Q ss_pred -------------------------------------------------hhccccCCCccccCCCCCcchhhhHHHHHHh
Q psy4515 112 -------------------------------------------------TFFVTEGYPGVRVDNMTSSWRDGLAFCALIH 142 (149)
Q Consensus 112 -------------------------------------------------~~~vteg~p~V~v~nfs~sw~dgla~~ali~ 142 (149)
|+..|.|||+|+|+||++||+|||||.|+||
T Consensus 127 GshDIVDGN~rL~LGLIWTIILRFQIq~I~ie~edn~E~rSAKDALLLWCQmKTAGYpnVNI~nFTtSWRdGLaFNALIH 206 (2473)
T KOG0517|consen 127 GSHDIVDGNHRLILGLIWTIILRFQIQDISIETEDNRETRSAKDALLLWCQMKTAGYPNVNITNFTTSWRDGLAFNALIH 206 (2473)
T ss_pred CcccccCCcchhhHHHHHHHHHheeeeeeEeecccchhhhhHHHHHHHHHHhhccCCCCcccccCccchhcchhHHHHHH
Confidence 3467889999999999999999999999999
Q ss_pred hhCCCCC
Q psy4515 143 HFRPDLM 149 (149)
Q Consensus 143 ~~rP~Li 149 (149)
++|||||
T Consensus 207 kHRPDLv 213 (2473)
T KOG0517|consen 207 KHRPDLV 213 (2473)
T ss_pred hcCcchh
Confidence 9999996
No 5
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=98.77 E-value=2.6e-09 Score=73.94 Aligned_cols=48 Identities=27% Similarity=0.486 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCcc
Q psy4515 63 TKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYY 110 (149)
Q Consensus 63 k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~ 110 (149)
++.++.||+..+..+.+..++||..+|+||.++|+|++.+.|+.++..
T Consensus 2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~ 49 (103)
T smart00033 2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKK 49 (103)
T ss_pred hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChh
Confidence 578999999999998778999999999999999999999999998764
No 6
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=98.56 E-value=2.4e-08 Score=69.69 Aligned_cols=50 Identities=30% Similarity=0.606 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc
Q psy4515 62 GTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA 111 (149)
Q Consensus 62 ~k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~ 111 (149)
.++.++.||+..+..+....++||..+|+||.++|+|++.+.|+.+++..
T Consensus 2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~ 51 (107)
T cd00014 2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKK 51 (107)
T ss_pred hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCcccccccc
Confidence 46889999999999987668999999999999999999999999986653
No 7
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=98.52 E-value=1.2e-07 Score=66.23 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhCCC-CCeeecCCCcccccchhhhhhhhccCCCccCccch
Q psy4515 63 TKALEMWCRRVTEGY-PGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYAT 112 (149)
Q Consensus 63 k~~LL~W~q~~~~~y-~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~~ 112 (149)
++.|+.|++..+..+ ++..|+||..+|+||.++|.||+.+.|+.+++...
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~ 51 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKI 51 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGS
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhc
Confidence 468999999999886 36789999999999999999999999998876653
No 8
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=98.26 E-value=1.3e-07 Score=65.70 Aligned_cols=42 Identities=31% Similarity=0.516 Sum_probs=35.5
Q ss_pred HHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc
Q psy4515 69 WCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA 111 (149)
Q Consensus 69 W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~ 111 (149)
|.+.+... .+..|.||+.|++||.++|+|||+|.|++++++.
T Consensus 1 ~~~~~~~~-~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~ 42 (85)
T PF11971_consen 1 WVNARCAP-YFPPVEDLTQDLSDGRALCALIHFYCPQLLPLED 42 (85)
T ss_pred CCCcccCC-CCcchhhhhhhhccHHHHHHHHHHhCcceecHhH
Confidence 44444444 4789999999999999999999999999999876
No 9
>KOG0035|consensus
Probab=98.24 E-value=3.5e-07 Score=85.38 Aligned_cols=38 Identities=55% Similarity=0.980 Sum_probs=35.6
Q ss_pred hhccccCCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515 112 TFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149 (149)
Q Consensus 112 ~~~vteg~p~V~v~nfs~sw~dgla~~ali~~~rP~Li 149 (149)
++++|..|.+|+|.||+.+|++|++|||++|++||+||
T Consensus 151 cq~~Ta~y~~v~v~nF~~sw~~gl~f~A~ih~~Rpdli 188 (890)
T KOG0035|consen 151 CQRKTAPYSNVNVQNFHTSWKDGLAFCALIHRHRPDLI 188 (890)
T ss_pred eecccCCccccccccceecccchHHHHHHHHhcChhhh
Confidence 35788899999999999999999999999999999986
No 10
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=97.67 E-value=1.3e-05 Score=71.02 Aligned_cols=37 Identities=54% Similarity=0.811 Sum_probs=31.9
Q ss_pred hccccCC-CccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515 113 FFVTEGY-PGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149 (149)
Q Consensus 113 ~~vteg~-p~V~v~nfs~sw~dgla~~ali~~~rP~Li 149 (149)
.+.+.+| |.+++-+|..+|+||++||++||.+|||++
T Consensus 135 ~~~t~~y~p~vd~~df~rswrdGLaf~aLIh~~rPDtl 172 (612)
T COG5069 135 DEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTL 172 (612)
T ss_pred cccccCcCCCccHHHHHHHhhhhHHHHHHHhhcCCccc
Confidence 3555666 569999999999999999999999999964
No 11
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.19 E-value=0.00018 Score=50.01 Aligned_cols=32 Identities=38% Similarity=0.618 Sum_probs=28.7
Q ss_pred CCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515 118 GYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149 (149)
Q Consensus 118 g~p~V~v~nfs~sw~dgla~~ali~~~rP~Li 149 (149)
......|+||..++.||.++|++||+|+|++|
T Consensus 7 ~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l 38 (85)
T PF11971_consen 7 APYFPPVEDLTQDLSDGRALCALIHFYCPQLL 38 (85)
T ss_pred CCCCcchhhhhhhhccHHHHHHHHHHhCccee
Confidence 44567899999999999999999999999975
No 12
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=96.05 E-value=0.0021 Score=43.98 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=28.7
Q ss_pred ccCCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149 (149)
Q Consensus 116 teg~p~V~v~nfs~sw~dgla~~ali~~~rP~Li 149 (149)
.+.+.+..++||..+|+||.++|++++.+.|+.+
T Consensus 13 l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i 46 (103)
T smart00033 13 LAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSV 46 (103)
T ss_pred cccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcC
Confidence 3444467889999999999999999999999864
No 13
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=95.07 E-value=0.0064 Score=42.00 Aligned_cols=32 Identities=34% Similarity=0.845 Sum_probs=27.2
Q ss_pred CCCccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515 118 GYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149 (149)
Q Consensus 118 g~p~V~v~nfs~sw~dgla~~ali~~~rP~Li 149 (149)
.+..+.++||..+|+||..+|.+++.+.|+.+
T Consensus 16 ~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~ 47 (107)
T cd00014 16 EYGPVTINNFSTDLKDGIALCKLLNSLSPDLI 47 (107)
T ss_pred cCCCccHHHHHHHHhchHHHHHHHHHHCcccc
Confidence 33335789999999999999999999999864
No 14
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=94.70 E-value=0.031 Score=38.48 Aligned_cols=30 Identities=37% Similarity=0.750 Sum_probs=26.7
Q ss_pred CccccCCCCCcchhhhHHHHHHhhhCCCCC
Q psy4515 120 PGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149 (149)
Q Consensus 120 p~V~v~nfs~sw~dgla~~ali~~~rP~Li 149 (149)
++..++||..+|+||..+|.+++.+.|+.+
T Consensus 17 ~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i 46 (108)
T PF00307_consen 17 KGRRVTNFSEDLRDGVVLCKLINKLFPGTI 46 (108)
T ss_dssp TTSTCSSTSGGGTTSHHHHHHHHHHSTTSS
T ss_pred CCCCcCcHHHHhcCHHHHHHHHHHHhhccc
Confidence 367888999999999999999999999854
No 15
>KOG0046|consensus
Probab=94.45 E-value=0.063 Score=48.54 Aligned_cols=89 Identities=20% Similarity=0.252 Sum_probs=57.7
Q ss_pred ccchHHHHHHHHHHhhC--CCCCeeecCCCcccccchhhhhhhhccCCCccCccch------------hccccC---CCc
Q psy4515 59 ERRGTKALEMWCRRVTE--GYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYAT------------FFVTEG---YPG 121 (149)
Q Consensus 59 ~~~~k~~LL~W~q~~~~--~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~~------------~~vteg---~p~ 121 (149)
+-++.+.||+|.+.+.+ +| .-.++||+++..||-+..-+++...|+..+-... .+.++. -+.
T Consensus 262 ~L~PEkiLLrW~N~HL~kag~-~k~~~nFs~DikD~eaY~~LLnqlap~~~~~~~l~~~d~l~RA~~vLq~Aekl~Cr~~ 340 (627)
T KOG0046|consen 262 RLPPEKILLRWMNYHLKKAGW-KKTVTNFSSDIKDSEAYTHLLNQLAPEHCSPAPLQETDDLERAELVLQQAEKLDCRRY 340 (627)
T ss_pred cCCHHHHHHHHHHHHHHhccc-ceehhhhhhhhccHHHHHHHHHHhccccCCccccccCChHhHHHHHHHHHHhcCCccc
Confidence 45778999999998885 44 3467999999999999888998888877754321 112221 111
Q ss_pred cccCCCCC-cchhhhHHHHHHhhhCCCC
Q psy4515 122 VRVDNMTS-SWRDGLAFCALIHHFRPDL 148 (149)
Q Consensus 122 V~v~nfs~-sw~dgla~~ali~~~rP~L 148 (149)
+..++... +-+=-+||+|-+-+.||.|
T Consensus 341 ltp~dvV~G~~kLNLAFVA~lFn~~pgL 368 (627)
T KOG0046|consen 341 LTPTDVVAGNPKLNLAFVANLFNTHPGL 368 (627)
T ss_pred cCHHHHhcCCchhhHHHHHHhcccCCCC
Confidence 22222111 1122378888888888875
No 16
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=92.05 E-value=0.057 Score=41.41 Aligned_cols=43 Identities=16% Similarity=0.366 Sum_probs=29.2
Q ss_pred HHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCccCccc
Q psy4515 66 LEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYA 111 (149)
Q Consensus 66 LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~lid~~~ 111 (149)
|+.|.+...- ...+.|+..+|.||+.+..|+++|.|.++|+..
T Consensus 1 l~~WL~~l~l---s~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~ 43 (158)
T PF06294_consen 1 LLKWLQSLDL---SRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHN 43 (158)
T ss_dssp HHHHHHHS-----S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS
T ss_pred ChHHHhcCCC---CCCCCchHHHcccccHHHHHHHHHCCCCccccc
Confidence 6789998331 345678888999999999999999999987754
No 17
>KOG0046|consensus
Probab=62.21 E-value=8.8 Score=35.19 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhCC-CCCeeecCCCc-ccccchhhhhhhhccCCCccCccc
Q psy4515 63 TKALEMWCRRVTEG-YPGVRVDNMTS-SWRDGLAFCALIHHFRPDLIFYYA 111 (149)
Q Consensus 63 k~~LL~W~q~~~~~-y~~v~v~nf~~-sw~dG~a~~Alih~~rP~lid~~~ 111 (149)
-+-++.|++++.+. -..-.+..|.. +-.||+.+.-||+...|..|||+-
T Consensus 511 D~dIv~WaN~klk~~Gk~s~IrSFkD~siS~g~~vLDLidaI~P~~Vn~~L 561 (627)
T KOG0046|consen 511 DSDIVNWANRKLKKAGKKSQIRSFKDKSISDGLFVLDLLDAIKPGVVNYSL 561 (627)
T ss_pred HHHHHHHHHHHHHhcCCccccccccCcccccCcchHHHHhhcCcCccchhh
Confidence 45689999988854 23557888886 899999999999999999999975
No 18
>KOG2046|consensus
Probab=57.02 E-value=8.2 Score=30.77 Aligned_cols=44 Identities=23% Similarity=0.470 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhCCCCCeeecCCCcccccchhhhhhhhccCCCcc
Q psy4515 63 TKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107 (149)
Q Consensus 63 k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~Alih~~rP~li 107 (149)
.+.|+.|+......-.. .-.||..-..||..+|-|+....|...
T Consensus 27 ~~el~~WI~~~~~~~~~-~~~~f~~~LKDG~iLCkl~N~l~p~~~ 70 (193)
T KOG2046|consen 27 EKELREWIENVVLTELP-ARGDFQDLLKDGVILCKLINKLYPGVV 70 (193)
T ss_pred HHHHHHHHHHhhccCCC-cccCHHHHHcchHHHHHHHHHhCcCcc
Confidence 35699999985211111 247888899999999999999999544
No 19
>KOG3631|consensus
Probab=47.29 E-value=16 Score=31.02 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhCCCCCeeecCCCcccccchhhh
Q psy4515 63 TKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFC 96 (149)
Q Consensus 63 k~~LL~W~q~~~~~y~~v~v~nf~~sw~dG~a~~ 96 (149)
|++|...|+.+..+. |+.|+++.++|.||..+.
T Consensus 259 K~sli~FvNkhLnkl-nLeVt~LdtQFaDGV~Lv 291 (365)
T KOG3631|consen 259 KKSLITFVNKHLNKL-NLEVTELDTQFADGVYLV 291 (365)
T ss_pred HHHHHHHHHHHhhhc-cceeehhhhhhccchHHH
Confidence 788999999999885 999999999999998644
No 20
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=28.30 E-value=35 Score=26.47 Aligned_cols=49 Identities=20% Similarity=0.420 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhhCCCCCeee-cCCCcccccchhhhhhhhccCCCccCccch
Q psy4515 62 GTKALEMWCRRVTEGYPGVRV-DNMTSSWRDGLAFCALIHHFRPDLIFYYAT 112 (149)
Q Consensus 62 ~k~~LL~W~q~~~~~y~~v~v-~nf~~sw~dG~a~~Alih~~rP~lid~~~~ 112 (149)
+.+....|+...... .++. -+|.....||..||-++..-.|.-|.|.++
T Consensus 14 ~~kev~~Wie~~l~~--k~~ppgdll~~lkdGv~lCril~ea~~~~I~yKeS 63 (178)
T COG5199 14 QQKEVTLWIETVLGE--KFEPPGDLLSLLKDGVRLCRILNEASPLDIKYKES 63 (178)
T ss_pred HHHHHHHHHHHHHHh--hhCCcccHHHHHhcchHHHHHHhhcCcccceeccc
Confidence 456788999877743 2222 567788999999999999888888888763
No 21
>KOG0518|consensus
Probab=26.52 E-value=42 Score=33.15 Aligned_cols=30 Identities=23% Similarity=0.152 Sum_probs=27.2
Q ss_pred CCeeecCCCcccccchhhhhhhhccCCCcc
Q psy4515 78 PGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107 (149)
Q Consensus 78 ~~v~v~nf~~sw~dG~a~~Alih~~rP~li 107 (149)
|.+.+.|+..+|++|.|+.+++...+|+..
T Consensus 160 P~~~~v~~~td~n~~~Alg~~le~~~vg~p 189 (1113)
T KOG0518|consen 160 PFVVKVNEGTDWNDVQALGPGLESARVGKP 189 (1113)
T ss_pred CceeccccccCcccceEeccchhhcccCCC
Confidence 778899999999999999999999887665
No 22
>PF06842 DUF1242: Protein of unknown function (DUF1242); InterPro: IPR009653 This family consists of a number of eukaryotic proteins of around 72 residues in length. The function of this family is unknown.
Probab=23.94 E-value=46 Score=19.46 Aligned_cols=12 Identities=33% Similarity=0.811 Sum_probs=10.0
Q ss_pred HHHHhhhCCCCC
Q psy4515 138 CALIHHFRPDLM 149 (149)
Q Consensus 138 ~ali~~~rP~Li 149 (149)
|+|++...|.++
T Consensus 12 CtYir~~~P~l~ 23 (36)
T PF06842_consen 12 CTYIRSIFPSLL 23 (36)
T ss_pred hHhHHhHCcccc
Confidence 789999999764
Done!