RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4515
(149 letters)
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain. The CH domain is
found in both cytoskeletal proteins and signal
transduction proteins. The CH domain is involved in
actin binding in some members of the family. However in
calponins there is evidence that the CH domain is not
involved in its actin binding activity. Most member
proteins have from two to four copies of the CH domain,
however some proteins such as calponin have only a
single copy.
Length = 104
Score = 65.4 bits (160), Expect = 8e-15
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 64 KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
KAL W V Y G+ V N RDGLA CAL++ RP LI
Sbjct: 2 KALLRWINEVLGEYGGLPVTNFFEDLRDGLALCALLNKLRPGLI 45
Score = 54.6 bits (132), Expect = 1e-10
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
V Y G+ V N RDGLA CAL++ RP L+
Sbjct: 11 VLGEYGGLPVTNFFEDLRDGLALCALLNKLRPGLI 45
>gnl|CDD|214479 smart00033, CH, Calponin homology domain. Actin binding domains
present in duplicate at the N-termini of spectrin-like
proteins (including dystrophin, alpha-actinin). These
domains cross-link actin filaments into bundles and
networks. A calponin homology domain is predicted in
yeasst Cdc24p.
Length = 101
Score = 61.6 bits (150), Expect = 2e-13
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 64 KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
K L W + Y V N +S +DG+A CAL++ P L+
Sbjct: 1 KTLLRWVNSLLAEYDKPPVTNFSSDLKDGVALCALLNSLSPGLV 44
Score = 51.5 bits (124), Expect = 2e-09
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
+ Y V N +S +DG+A CAL++ P L+
Sbjct: 10 LLAEYDKPPVTNFSSDLKDGVALCALLNSLSPGLV 44
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which
may be present as a single copy or in tandem repeats
(which increases binding affinity). The CH domain is
found in cytoskeletal and signal transduction proteins,
including actin-binding proteins like spectrin,
alpha-actinin, dystrophin, utrophin, and fimbrin,
proteins essential for regulation of cell shape
(cortexillins), and signaling proteins (Vav).
Length = 107
Score = 60.0 bits (146), Expect = 1e-12
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 69 WCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYY 110
W +V Y V ++N ++ +DG+A C L++ PDLI
Sbjct: 9 WINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKK 50
Score = 51.2 bits (123), Expect = 3e-09
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
V Y V ++N ++ +DG+A C L++ PDL+
Sbjct: 13 VLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLI 47
>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin
(EF-Hand superfamily) [Cytoskeleton].
Length = 612
Score = 61.1 bits (148), Expect = 1e-11
Identities = 22/43 (51%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 68 MWCRRVTEGY-PGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
+WC T GY P V + SWRDGLAF ALIH RPD +
Sbjct: 132 LWCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTLDP 174
Score = 50.3 bits (120), Expect = 6e-08
Identities = 20/36 (55%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 115 VTEGY-PGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T GY P V + SWRDGLAF ALIH RPD +
Sbjct: 137 DTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTL 172
>gnl|CDD|221350 pfam11971, CAMSAP_CH, CAMSAP CH domain. This domain is the
N-terminal CH domain from the CAMSAP proteins.
Length = 85
Score = 47.7 bits (114), Expect = 4e-08
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 70 CRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
V+N+T + DG A ALIH + P L+
Sbjct: 1 YVSARCTPLSPPVENLTRDFSDGCALAALIHFYCPQLV 38
Score = 45.7 bits (109), Expect = 2e-07
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
V+N+T + DG A ALIH + P L+
Sbjct: 4 ARCTPLSPPVENLTRDFSDGCALAALIHFYCPQLV 38
>gnl|CDD|172917 PRK14441, PRK14441, acylphosphatase; Provisional.
Length = 93
Score = 28.4 bits (63), Expect = 0.52
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 58 GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRD 91
GER AL WC G P RVD + W +
Sbjct: 51 GERAAVGALVRWCHA---GPPAARVDRVEVEWVE 81
>gnl|CDD|150200 pfam09446, VMA21, VMA21-like domain. This presumed short domain
appears to contain two potential transmembrane helices.
VMA21 is localised in the ER where it is needed as an
accessory factor for assembly of the V0 component of the
vacuolar ATPase.
Length = 66
Score = 26.5 bits (59), Expect = 1.6
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 93 LAFCALIHHFRPDLIFYYATFFVTEGYPGV-RVDNMTSSWRDGLAFCALI 141
L F AL+ P L F+ F+V EG+ G+ R+DN S A++
Sbjct: 9 LFFTALMIVL-PVLTFFIFKFYVLEGFFGLSRLDNTIYS-----GILAVV 52
>gnl|CDD|173918 cd02167, NMNAT_NadR, Nicotinamide/nicotinate mononucleotide
adenylyltransferase of bifunctional NadR-like proteins.
NMNAT domain of NadR protein. The NadR protein (NadR) is
a bifunctional enzyme possessing both NMN
adenylytransferase (NMNAT) and ribosylnicotinamide
kinase (RNK) activities. Its function is essential for
the growth and survival of H. influenzae and thus may
present a new highly specific anti-infectious drug
target. The N-terminal domain that hosts the NMNAT
activity is closely related to archaeal NMNAT. The bound
NAD at the active site of the NMNAT domain reveals
several critical interactions between NAD and the
protein.The NMNAT domain of hiNadR defines yet another
member of the pyridine nucleotide adenylyltransferase.
Length = 158
Score = 27.5 bits (61), Expect = 2.2
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 88 SWRDGLA-FCALIHHFRPDLIFYY----ATFFVTEGYPGVRV 124
W + + A RPD++F A F + Y G +V
Sbjct: 84 IWSNRVKTLIAENTRCRPDIVFTAEEYEAAFELVLAYLGAQV 125
>gnl|CDD|222391 pfam13803, DUF4184, Domain of unknown function (DUF4184). This
domain of unknown function contains several highly
conserved histidines.
Length = 246
Score = 27.2 bits (61), Expect = 3.3
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 92 GLAFCALIHHFRPDLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFC--ALI 141
GL + H + + +R++ S + L F ALI
Sbjct: 63 GLLLYLVFHLLIRPPLIDLLPIPLDSRLSYLRLNWARHSIKQWLVFILSALI 114
>gnl|CDD|99723 cd06402, PB1_p62, The PB1 domain is an essential part of p62
scaffold protein (alias sequestosome 1,SQSTM) involved
in cell signaling, receptor internalization, and
protein turnover. The PB1 domain is a modular domain
mediating specific protein-protein interaction which
play roles in many critical cell processes. A canonical
PB1-PB1 interaction, which involves heterodimerization
of two PB1 domains, is required for the formation of
macromolecular signaling complexes ensuring specificity
and fidelity during cellular signaling. The interaction
between two PB1 domain depends on the type of PB1.
There are three types of PB1 domains: type I which
contains an OPCA motif, acidic aminoacid cluster, type
II which contains a basic cluster, and type I/II which
contains both an OPCA motif and a basic cluster.
Interactions of PB1 domains with other protein domains
have been described as noncanonical PB1-interactions.
The PB1 domain module is conserved in amoebas, fungi,
animals, and plants.
Length = 87
Score = 25.8 bits (57), Expect = 4.3
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 62 GTKALEMWCRRVTEGYPGVRVDNMTSSWRD 91
+ + E +V +P +R N W+D
Sbjct: 25 VSTSYEYLVEKVAAVFPSLRGKNFQLFWKD 54
>gnl|CDD|221410 pfam12077, DUF3556, Transmembrane protein of unknown function
(DUF3556). This family of transmembrane proteins is
functionally uncharacterized. This protein is found in
bacteria. Proteins in this family are typically between
576 to 592 amino acids in length.
Length = 574
Score = 26.6 bits (59), Expect = 6.0
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 105 DLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFCALIH-----HFRPDL 148
++ F + F+ G+ GV + +++S W + L + PD
Sbjct: 340 NVFFIFGVLFLFVGHAGVGLADLSSPWLLAVLIAVLAGVPILGNLFPDK 388
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as
histone deacetylase 11. Class IV histone deacetylases
(HDAC11; EC 3.5.1.98) are predicted Zn-dependent
enzymes. This class includes animal HDAC11, plant HDA2
and related bacterial deacetylases. Enzymes in this
subfamily participate in regulation of a number of
different processes through protein modification
(deacetylation). They catalyze hydrolysis of
N(6)-acetyl-lysine of histones (or other proteins) to
yield a deacetylated proteins. Histone deacetylases
often act as members of large multi-protein complexes
such as mSin3A or SMRT/N-CoR. Human HDAC11 does not
associate with them but can interact with HDAC6 in vivo.
It has been suggested that HDAC11 and HDAC6 may use
non-histone proteins as their substrates and play a role
other than to directly modulate chromatin structure. In
normal tissues, expression of HDAC11 is limited to
kidney, heart, brain, skeletal muscle and testis,
suggesting that its function might be tissue-specific.
In mammals, HDAC11 proteins are known to be involved in
progression of various tumors. HDAC11 plays an essential
role in regulating OX40 ligand (OX40L) expression in
Hodgkin lymphoma (HL); selective inhibition of HDAC11
expression significantly up-regulates OX40L and induces
apoptosis in HL cell lines. Thus, inhibition of HDAC11
could be a therapeutic drug option for antitumor immune
response in HL patients.
Length = 275
Score = 26.3 bits (59), Expect = 6.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 98 LIHHFRPDLIFYYA 111
L+ FRPDL+FY A
Sbjct: 201 LLAEFRPDLVFYNA 214
>gnl|CDD|225971 COG3437, COG3437, Response regulator containing a CheY-like
receiver domain and an HD-GYP domain [Transcription /
Signal transduction mechanisms].
Length = 360
Score = 26.6 bits (59), Expect = 6.0
Identities = 4/30 (13%), Positives = 6/30 (20%), Gaps = 2/30 (6%)
Query: 91 DGLAFCALIHHFRPDLIFYYATFFVTEGYP 120
DG + P + Y
Sbjct: 72 DGAEVLNKLKAMSPSTR--RIPVILLTAYA 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.142 0.502
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,777,354
Number of extensions: 680910
Number of successful extensions: 765
Number of sequences better than 10.0: 1
Number of HSP's gapped: 764
Number of HSP's successfully gapped: 25
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.6 bits)