RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4515
(149 letters)
>1bhd_A Utrophin; calponin homology, actin binding, structural protein;
2.00A {Homo sapiens} SCOP: a.40.1.1
Length = 118
Score = 99.3 bits (248), Expect = 4e-28
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 56 DMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
D+ + K L W R+ T Y V V N T+SW DGLAF A++H +PDL
Sbjct: 3 DLQQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLF 54
Score = 79.2 bits (196), Expect = 3e-20
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
T Y V V N T+SW DGLAF A++H +PDL
Sbjct: 20 TTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDL 53
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Homo sapiens}
Length = 127
Score = 99.7 bits (249), Expect = 5e-28
Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 58 GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
G AL +WC+ T GYP V V N T+SWRDGLAF A++H RPDL+
Sbjct: 4 GSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLL 53
Score = 80.1 bits (198), Expect = 2e-20
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
T GYP V V N T+SWRDGLAF A++H RPDL
Sbjct: 19 KTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDL 52
>1bkr_A Spectrin beta chain; filamentous actin-binding domain,
cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB:
1aa2_A
Length = 109
Score = 98.5 bits (246), Expect = 9e-28
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 59 ERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
++ AL +WC+ T GYP V + N T+SWRDG+AF ALIH RPDLI
Sbjct: 1 KKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI 49
Score = 78.4 bits (194), Expect = 4e-20
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
T GYP V + N T+SWRDG+AF ALIH RPDL
Sbjct: 15 KTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDL 48
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 98.2 bits (245), Expect = 1e-27
Identities = 26/50 (52%), Positives = 39/50 (78%)
Query: 58 GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
+++L +WC+ VT+ Y GV++ N T+SWR+GL+FCA++HHFRPDLI
Sbjct: 6 SGPNASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLI 55
Score = 80.1 bits (198), Expect = 2e-20
Identities = 22/34 (64%), Positives = 30/34 (88%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
VT+ Y GV++ N T+SWR+GL+FCA++HHFRPDL
Sbjct: 21 VTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDL 54
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain,
actin binding, structural genomics, NPPSFA; NMR {Homo
sapiens} PDB: 2jv9_A 2k3s_A
Length = 128
Score = 98.6 bits (246), Expect = 1e-27
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 64 KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
+ L WCR T GY V + N +SSW DG+AFCAL+H+F P+
Sbjct: 10 QMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAF 53
Score = 80.5 bits (199), Expect = 1e-20
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
T GY V + N +SSW DG+AFCAL+H+F P+
Sbjct: 19 KTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEA 52
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Length = 121
Score = 98.1 bits (245), Expect = 1e-27
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 64 KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
L WC+R T+GY GV V ++T SW+ GLA CA+IH +RPDLI
Sbjct: 12 SKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLI 55
Score = 80.4 bits (199), Expect = 1e-20
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
T+GY GV V ++T SW+ GLA CA+IH +RPDL
Sbjct: 21 QTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDL 54
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains;
CH domain, mical, structural genomics; NMR {Homo
sapiens} PDB: 2dk9_A
Length = 116
Score = 97.4 bits (243), Expect = 2e-27
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 64 KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
+ L WC+ T GYPGV V +++SSW DGLA CAL++ +P L+
Sbjct: 10 EELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLL 53
Score = 79.6 bits (197), Expect = 2e-20
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
T GYPGV V +++SSW DGLA CAL++ +P L
Sbjct: 19 QTAGYPGVHVSDLSSSWADGLALCALVYRLQPGL 52
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 80.0 bits (197), Expect = 3e-19
Identities = 28/58 (48%), Positives = 34/58 (58%)
Query: 50 FDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
F D + E + L +WC+R T Y V V N +SW+DGLA CALIH RPDLI
Sbjct: 129 FAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLI 186
Score = 63.8 bits (155), Expect = 3e-13
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T Y V V N +SW+DGLA CALIH RPDL+
Sbjct: 153 TAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLI 186
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 78.4 bits (192), Expect = 6e-18
Identities = 26/60 (43%), Positives = 33/60 (55%)
Query: 50 FDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
F D + E + L +W +R T Y V + N SW+DGL FCALIH RP+LI Y
Sbjct: 110 FAIQDISVEETSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDY 169
Score = 60.7 bits (146), Expect = 1e-11
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
T Y V + N SW+DGL FCALIH RP+L
Sbjct: 134 TAPYKNVNIQNFHISWKDGLGFCALIHRHRPEL 166
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology
domain, structural protein; 2.00A {Mus musculus} SCOP:
a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Length = 245
Score = 75.0 bits (184), Expect = 2e-17
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 58 GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
+ + L +W +R+ EGY G+R DN T+SWRDG F A+IH +P LI
Sbjct: 130 EDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDM 181
Score = 60.4 bits (146), Expect = 6e-12
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
+ EGY G+R DN T+SWRDG F A+IH +P L
Sbjct: 145 MVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPML 178
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 75.0 bits (184), Expect = 3e-17
Identities = 8/55 (14%), Positives = 21/55 (38%)
Query: 56 DMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYY 110
++ + + L W E +++N ++ +D A+ L++ P
Sbjct: 163 ELMKLSPEELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEG 217
Score = 62.3 bits (151), Expect = 1e-12
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 114 FVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
F E +++N ++ +D A+ L++ P
Sbjct: 179 FHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQ 214
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis
bullosa, actin-binding, alternative splicing, coiled
coil, cytoplasm; 2.75A {Homo sapiens}
Length = 296
Score = 74.8 bits (183), Expect = 4e-17
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 58 GERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
+ + L +W +R+ EGY G+R DN TSSWRDG F A+IH +P LI
Sbjct: 186 EDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDM 237
Score = 60.1 bits (145), Expect = 1e-11
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
+ EGY G+R DN TSSWRDG F A+IH +P L
Sbjct: 201 MVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLL 234
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 70.4 bits (172), Expect = 1e-15
Identities = 25/57 (43%), Positives = 31/57 (54%)
Query: 53 LDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
+ + + K L W R+ T YP V V N T+SW DGLA ALIH RPDL +
Sbjct: 127 IMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDW 183
Score = 55.7 bits (134), Expect = 2e-10
Identities = 21/34 (61%), Positives = 22/34 (64%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
T YP V V N T+SW DGLA ALIH RPDL
Sbjct: 147 STRNYPQVNVINFTTSWSDGLALNALIHSHRPDL 180
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 70.1 bits (171), Expect = 2e-15
Identities = 11/72 (15%), Positives = 24/72 (33%)
Query: 42 CQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHH 101
S + + E + + + P + + N + W+ G A AL+
Sbjct: 148 ILHYSISMPMWDEEEDEEAKKQTPKQRLLGWIQNKLPQLPITNFSRDWQSGRALGALVDS 207
Query: 102 FRPDLIFYYATF 113
P L + ++
Sbjct: 208 CAPGLCPDWDSW 219
Score = 59.3 bits (143), Expect = 2e-11
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
+ P + + N + W+ G A AL+ P L
Sbjct: 179 IQNKLPQLPITNFSRDWQSGRALGALVDSCAPGL 212
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 68.1 bits (166), Expect = 9e-15
Identities = 12/69 (17%), Positives = 22/69 (31%)
Query: 42 CQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHH 101
S D + + + + P + + N +W+DG A AL+
Sbjct: 121 ILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDS 180
Query: 102 FRPDLIFYY 110
P L +
Sbjct: 181 CAPGLCPDW 189
Score = 60.0 bits (145), Expect = 8e-12
Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 11/102 (10%)
Query: 55 FDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYATFF 114
+ +R K + + + + +G + W L + + + +
Sbjct: 87 LEFLDRESIKLVSIDSKAIVDGNL---KLILGLVWTLILHYSISMPVWEDEGDDDAKKQT 143
Query: 115 --------VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
+ P + + N +W+DG A AL+ P L
Sbjct: 144 PKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGL 185
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 65.5 bits (159), Expect = 2e-13
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 63 TKALEMWCRR-VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
K L W + +G V N ++ +D A+ L++ P+
Sbjct: 154 EKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHC 199
Score = 58.6 bits (141), Expect = 4e-11
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 104 PDLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
++ + F + +G V N ++ +D A+ L++ P+
Sbjct: 154 EKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEH 198
Score = 57.4 bits (138), Expect = 9e-11
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 6/88 (6%)
Query: 28 DMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRGT----KALEMWCRR-VTEGYPGVRV 82
D+ + L + Q L G + W R V +++
Sbjct: 360 DIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQI 419
Query: 83 DNMT-SSWRDGLAFCALIHHFRPDLIFY 109
++ S GL F L+ P ++ +
Sbjct: 420 ESFKDKSLSSGLFFLNLLWAVEPRVVNW 447
Score = 47.0 bits (111), Expect = 4e-07
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 115 VTEGYPGVRVDNMT-SSWRDGLAFCALIHHFRPDL 148
V +++++ S GL F L+ P +
Sbjct: 410 VRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRV 444
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 64.0 bits (155), Expect = 5e-13
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 30 GERRGTKALEMWCQCNSDPCFDTLDFDMGERRGTK--ALEMWCRRVTEGYPGVRVDNMTS 87
G R T AL +W + G + + + +G G ++ +
Sbjct: 377 GSRTLTLAL-VWQMMRMNITKTLHSLSRGGKTLSDSDMVAWANSMAAKGGKGSQIRSFRD 435
Query: 88 -SWRDGLAFCALIHHFRPDLI 107
S G+ ++H + + +
Sbjct: 436 PSISTGVFVLDVLHGIKSEYV 456
Score = 60.5 bits (146), Expect = 1e-11
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 46 SDPCFDTLDFDMGERRGTK-ALEMWCRRVTEGY-PGVRVDNMTSSWRDGLAFCALIHHFR 103
+ D R + L W + V N + DG + L++
Sbjct: 145 YRLLEEDETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLA 204
Query: 104 PDLI 107
P+L
Sbjct: 205 PELC 208
Score = 54.7 bits (131), Expect = 1e-09
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 115 VTEGYPGVRVDNMTS-SWRDGLAFCALIHHFRPDL 148
+G G ++ + S G+ ++H + +
Sbjct: 421 AAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEY 455
Score = 49.0 bits (116), Expect = 9e-08
Identities = 7/46 (15%), Positives = 17/46 (36%)
Query: 103 RPDLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
++ + + + V N + DG + L++ P+L
Sbjct: 162 PEKILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPEL 207
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.050
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 10/30 (33%)
Query: 3 ERRGTKALE----MWCRRAPD--PCFDTLN 26
E++ K L+ ++ A D P +
Sbjct: 18 EKQALKKLQASLKLY---ADDSAPAL-AIK 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.34
Identities = 18/153 (11%), Positives = 47/153 (30%), Gaps = 27/153 (17%)
Query: 7 TKALEM-WCRRAPDPCFDTLNFDMGERRGTKALEMWCQCNSDPCFDT-----LDFDM-GE 59
T L + W +N +L P T + ++ +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLH-----KYSL-----VEKQPKESTISIPSIYLELKVK 438
Query: 60 RRGTKALEMWCRRVTEGYPGVRV---DNMTSSWRDGLAFCALIHHF----RPDLIFYYAT 112
AL R + + Y + D++ + D + + HH P+ + +
Sbjct: 439 LENEYALH---RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 113 FFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFR 145
F+ + ++ + +++W + + +
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Length = 144
Score = 28.4 bits (63), Expect = 0.56
Identities = 6/62 (9%), Positives = 16/62 (25%), Gaps = 3/62 (4%)
Query: 69 WCRRVTE---GYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYATFFVTEGYPGVRVD 125
W G P ++G+ L++ P+ +++
Sbjct: 17 WIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQME 76
Query: 126 NM 127
+
Sbjct: 77 QV 78
Score = 25.7 bits (56), Expect = 5.7
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 118 GYPGVRVDNMTSSWRDGLAFCALIHHFRPD 147
G P ++G+ L++ P+
Sbjct: 27 GRPDRGRLGFQVWLKNGVILSKLVNSLYPE 56
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Length = 155
Score = 27.7 bits (61), Expect = 1.3
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 69 WCRRVTE---GYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
W G P +N + +DG C LI+ P+
Sbjct: 25 WITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQ 66
Score = 26.9 bits (59), Expect = 2.1
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 118 GYPGVRVDNMTSSWRDGLAFCALIHHFRPD 147
G P +N + +DG C LI+ P+
Sbjct: 35 GRPQPGRENFQNWLKDGTVLCELINALYPE 64
>3kfd_E TGF-beta receptor type-2; TGF-beta recepto tbrii, TBRI, growth
factor, serine/threonine-PROT kinase, cytokine-cytokine
receptor complex; 3.00A {Homo sapiens}
Length = 116
Score = 26.2 bits (57), Expect = 3.2
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 29 MGERRGTKALEMWCQCNSDPCFDTLDFD 56
M E++ C C+SD C D + F
Sbjct: 86 MKEKKKPGETFFMCSCSSDECNDNIIFS 113
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 203
Score = 26.5 bits (58), Expect = 3.8
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 82 VDNMTSSWRDGLAFCALIHHFRPDLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFCALI 141
S R+G+ L+ F+PD + F + DN+ + + D + L
Sbjct: 75 TSTFEQSLRNGVVLALLVQKFQPDKLI---KIFYSNELQFRHSDNI-NKFLDFIHGIGLP 130
Query: 142 HHFRPDL 148
F +L
Sbjct: 131 EIFHFEL 137
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 26.5 bits (58), Expect = 4.2
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 71 RRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
RVT + G +V + + RDG+ C L+++ P I
Sbjct: 24 HRVT--WEGAQVCELAQALRDGVLLCQLLNNLLPHAI 58
>1m9z_A TGF-beta receptor type II; three finger toxin fold, hormone-growth
factor complex; 1.05A {Homo sapiens} SCOP: g.7.1.3 PDB:
1plo_A 1ktz_B 2pjy_B
Length = 111
Score = 25.8 bits (56), Expect = 4.4
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 29 MGERRGTKALEMWCQCNSDPCFDTLDFD 56
M E++ C C+SD C D + F
Sbjct: 75 MKEKKKPGETFFMCSCSSDECNDNIIFS 102
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 25.4 bits (56), Expect = 4.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 83 DNMTSSWRDGLAFCALIHHFRPDLI 107
DN +DG+ C LI+ +P +
Sbjct: 22 DNFMDGLKDGVILCELINKLQPGSV 46
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B*
3blv_B
Length = 354
Score = 26.0 bits (58), Expect = 5.8
Identities = 2/17 (11%), Positives = 9/17 (52%)
Query: 69 WCRRVTEGYPGVRVDNM 85
+ +++ YP + ++
Sbjct: 203 VAKELSKEYPDLTLETE 219
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair,
exonuclease, hydrolase, nuclease, nucleus,
phosphoprotein, polymorphism, cytoplasm; HET: SUC;
2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Length = 281
Score = 25.7 bits (56), Expect = 7.2
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 23 DTLNFDMGERRGTKALEMWCQCNSDPCFDT 52
D LNF + ++ + MWC+ + F+
Sbjct: 38 DKLNFILCDKLANGGVSMWCELEQENFFNE 67
>1f45_B Interleukin-12 alpha chain; cytokine, cytokine-cytokine complex;
HET: NAG MAN; 2.80A {Homo sapiens} SCOP: a.26.1.1 PDB:
3hmx_B*
Length = 197
Score = 25.4 bits (54), Expect = 7.3
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 111 ATFFVTEGYPGVRVDNMTSSWRDGLAFCALIHHFR 145
A F +E P ++ + C L+H FR
Sbjct: 147 ALNFNSETVPQKSSLEEPDFYKTKIKLCILLHAFR 181
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Length = 121
Score = 24.9 bits (54), Expect = 7.3
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 83 DNMTSSWRDGLAFCALIHHFRPDLI 107
+ + SS ++G+ C LI+ P +
Sbjct: 33 EFLKSSLKNGVVLCKLINRLMPGSV 57
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Length = 135
Score = 24.9 bits (54), Expect = 9.3
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 6 GTKALEMWCRRAPDPCFDTLNFDMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRGTKA 65
+ALE + M R + ++W + D + G +
Sbjct: 33 ALQALEPA--WITSRQIEAGRRAMT-RNARRGGKIWVRIFPDKPVTVRPAETRMGSGKGS 89
Query: 66 LEMWCRRVTEG 76
E W V G
Sbjct: 90 PEYWVAVVKPG 100
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle,
protein binding; 2.21A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 159
Score = 24.8 bits (54), Expect = 9.5
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 82 VDNMTSSWRDGLAFCALIHHFRPDLIFYYATFFVTEGYPGVRVDNMTSSWRDGLAFCALI 141
S R+G+ L+ F+PD + F + DN+ + + D + L
Sbjct: 31 TSTFEQSLRNGVVLALLVQKFQPDKLI---KIFYSNELQFRHSDNI-NKFLDFIHGIGLP 86
Query: 142 HHFRPD 147
F +
Sbjct: 87 EIFHFE 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.142 0.502
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,574,376
Number of extensions: 144699
Number of successful extensions: 458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 70
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.4 bits)