RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4515
(149 letters)
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 79.1 bits (195), Expect = 1e-20
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 64 KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
K L W R+ T Y V V N T+SW DGLAF A++H +PDL +
Sbjct: 8 KILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSW 53
Score = 62.9 bits (153), Expect = 2e-14
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T Y V V N T+SW DGLAF A++H +PDL
Sbjct: 17 TTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLF 51
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 78.1 bits (192), Expect = 3e-20
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 64 KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
AL +WC+ T GYP V + N T+SWRDG+AF ALIH RPDLI +
Sbjct: 5 DALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDF 50
Score = 60.7 bits (147), Expect = 1e-13
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T GYP V + N T+SWRDG+AF ALIH RPDL+
Sbjct: 14 KTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLI 48
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 78.4 bits (193), Expect = 4e-20
Identities = 25/49 (51%), Positives = 29/49 (59%)
Query: 64 KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYYAT 112
K L W R+ T YP V V N T+SW DGLA ALIH RPDL + +
Sbjct: 19 KILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSV 67
Score = 62.6 bits (152), Expect = 4e-14
Identities = 21/36 (58%), Positives = 22/36 (61%)
Query: 114 FVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
T YP V V N T+SW DGLA ALIH RPDL
Sbjct: 27 QSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLF 62
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 72.3 bits (177), Expect = 5e-18
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 64 KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
+ L +W +R+ EGY G+R DN T+SWRDG F A+IH +P LI
Sbjct: 9 EKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLI 52
Score = 57.3 bits (138), Expect = 3e-12
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
+ EGY G+R DN T+SWRDG F A+IH +P L+
Sbjct: 18 MVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLI 52
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 73.2 bits (179), Expect = 1e-16
Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 28 DMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRGT---KALEMWCRRVTEGYPGVRVDN 84
D+ + T L + Q TL + + +G G ++ +
Sbjct: 365 DITDGSRTLTLALVWQMMRMNITKTLHSLSRGGKTLSDSDMVAWANSMAAKGGKGSQIRS 424
Query: 85 M-TSSWRDGLAFCALIHHFRPDLIFY 109
S G+ ++H + + + Y
Sbjct: 425 FRDPSISTGVFVLDVLHGIKSEYVDY 450
Score = 61.6 bits (149), Expect = 1e-12
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 64 KALEMWCRRVTEGY-PGVRVDNMTSSWRDGLAFCALIHHFRPDLIFY 109
K L W + V N + DG + L++ P+L
Sbjct: 156 KILLRWFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSR 202
Score = 59.7 bits (144), Expect = 6e-12
Identities = 5/36 (13%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 115 VTEGYPGVRVDNM-TSSWRDGLAFCALIHHFRPDLM 149
+G G ++ + S G+ ++H + + +
Sbjct: 413 AAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYV 448
Score = 47.3 bits (112), Expect = 1e-07
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 115 VTEGY-PGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
+ V N + DG + L++ P+L
Sbjct: 165 HLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELC 200
Score = 25.8 bits (56), Expect = 2.5
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 54 DFDMGERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
FD R + +W + + + ++ RDGL P+ +
Sbjct: 270 PFDAEGEREARVFTLWLNSLD---VTPSIHDFFNNLRDGLILLQAYDKITPNTV 320
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 66.6 bits (162), Expect = 3e-14
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 6/88 (6%)
Query: 28 DMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRG----TKALEMWCRRVTEGY-PGVRV 82
D+ + L + Q L G + W R +++
Sbjct: 354 DIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQI 413
Query: 83 DNMTS-SWRDGLAFCALIHHFRPDLIFY 109
++ S GL F L+ P ++ +
Sbjct: 414 ESFKDKSLSSGLFFLNLLWAVEPRVVNW 441
Score = 63.1 bits (153), Expect = 4e-13
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 64 KALEMWCRRVT-EGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
K L W +G V N ++ +D A+ L++ P+
Sbjct: 149 KVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHC 193
Score = 54.2 bits (130), Expect = 5e-10
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 115 VTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 148
+ +G V N ++ +D A+ L++ P+
Sbjct: 159 LKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEH 192
Score = 53.8 bits (129), Expect = 6e-10
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 115 VTEGYPGVRVDNMTS-SWRDGLAFCALIHHFRPDL 148
V +++++ S GL F L+ P +
Sbjct: 404 VRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRV 438
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 57.7 bits (139), Expect = 2e-12
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 64 KALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYY 110
+ L W E +++N ++ +D A+ L++ P
Sbjct: 12 ELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQKEG 58
Score = 45.8 bits (108), Expect = 8e-08
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 116 TEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
E +++N ++ +D A+ L++ P
Sbjct: 22 LENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQ 55
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 44.2 bits (104), Expect = 3e-07
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 64 KALEMWC-RRVTEGYPGVRVDNMT-SSWRDGLAFCALIHHFRPDLIFYY 110
+ W R ++E + + + LA LI +P I Y
Sbjct: 10 DIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYD 58
Score = 40.0 bits (93), Expect = 1e-05
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 115 VTEGYPGVRVDNMT-SSWRDGLAFCALIHHFRPDLM 149
++E + + + LA LI +P +
Sbjct: 20 LSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCI 55
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 159
Score = 28.8 bits (64), Expect = 0.16
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 69 WCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYY 110
W G S R+G+ L+ F+PD +
Sbjct: 19 WIEECL-GTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKI 59
Score = 25.8 bits (56), Expect = 1.8
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 124 VDNMTSSWRDGLAFCALIHHFRPDLM 149
S R+G+ L+ F+PD +
Sbjct: 31 TSTFEQSLRNGVVLALLVQKFQPDKL 56
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 27.2 bits (60), Expect = 0.39
Identities = 8/49 (16%), Positives = 15/49 (30%)
Query: 59 ERRGTKALEMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLI 107
E K W + ++N+ S +DG L+ +
Sbjct: 6 EDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKL 54
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 27.3 bits (60), Expect = 0.43
Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 4/56 (7%)
Query: 59 ERRGTKALEMWC----RRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDLIFYY 110
+R K W + + ++ RDG +L+ D +
Sbjct: 3 DRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRE 58
Score = 24.6 bits (53), Expect = 3.4
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 120 PGVRVDNMTSSWRDGLAFCALIHHFRPD 147
+ ++ RDG +L+ D
Sbjct: 26 AQRHISDLYEDLRDGHNLISLLEVLSGD 53
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 27.8 bits (61), Expect = 0.47
Identities = 11/105 (10%), Positives = 18/105 (17%), Gaps = 5/105 (4%)
Query: 14 CRRAPDPCFDTLNFDMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRGTKALEMWCRRV 73
R L D+ G + + + F G GT +
Sbjct: 149 ILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGK 208
Query: 74 TEGYPGVRVDNMTSSWRDGLA-----FCALIHHFRPDLIFYYATF 113
Y + F P +
Sbjct: 209 GRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGA 253
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide
pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId:
2261]}
Length = 279
Score = 26.9 bits (59), Expect = 0.90
Identities = 11/93 (11%), Positives = 25/93 (26%), Gaps = 1/93 (1%)
Query: 26 NFDMGERRGTKALEMWCQCNSDPCFDTLDFDMGERRGTKALEMWCRRVTEGYPGVRVDNM 85
+ KA + + + + D M + + VR+D
Sbjct: 69 ALIITVGDQVKAWKYFDEVIEEEVPRIALVDT-FYDEKVEAVMAAEALGKKLFAVRLDTP 127
Query: 86 TSSWRDGLAFCALIHHFRPDLIFYYATFFVTEG 118
+S + + + + FV+ G
Sbjct: 128 SSRRGNFRKIIEEVRWELKVRGYDWVKIFVSGG 160
>d1m9za_ g.7.1.3 (A:) TGF-beta type II receptor extracellular domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 24.8 bits (54), Expect = 2.4
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 29 MGERRGTKALEMWCQCNSDPCFDTLDFD 56
M E++ C C+SD C D + F
Sbjct: 75 MKEKKKPGETFFMCSCSSDECNDNIIFS 102
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 108
Score = 24.5 bits (53), Expect = 3.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 83 DNMTSSWRDGLAFCALIHHFRPDLI 107
DN +DG+ C LI+ +P +
Sbjct: 22 DNFMDGLKDGVILCELINKLQPGSV 46
Score = 23.3 bits (50), Expect = 8.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 125 DNMTSSWRDGLAFCALIHHFRPD 147
DN +DG+ C LI+ +P
Sbjct: 22 DNFMDGLKDGVILCELINKLQPG 44
>d1ks6a_ g.7.1.3 (A:) TGF-beta type II receptor extracellular domain
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 107
Score = 23.7 bits (51), Expect = 6.3
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 29 MGERRGTKALEMWCQCNSDPCFDTLDF 55
M E++ L C C + C D L F
Sbjct: 78 MKEKKDDGGLMFMCSCTGEECNDVLIF 104
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD,
receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Length = 140
Score = 23.8 bits (51), Expect = 7.2
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 67 EMWCRRVTEGYPGVRVDNMTSSWRDGLAFCALIHHFRPDL 106
++ + G+ + ++ DGLA I PDL
Sbjct: 34 TEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDL 73
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 144
Score = 23.8 bits (51), Expect = 7.6
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 64 KALEMWCRRVTE---GYPGVRVDNMTSSWRDGLAFCALIHHFRPD 105
+ L W G P ++G+ L++ P+
Sbjct: 12 ERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPE 56
Score = 23.8 bits (51), Expect = 9.1
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 118 GYPGVRVDNMTSSWRDGLAFCALIHHFRPDLM 149
G P ++G+ L++ P+
Sbjct: 27 GRPDRGRLGFQVWLKNGVILSKLVNSLYPEGS 58
>d2jioa1 b.52.2.2 (A:601-723) Periplasmic nitrate reductase alpha
chain, NapA {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 123
Score = 23.5 bits (50), Expect = 8.5
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 8/81 (9%)
Query: 12 MWCRRAPDPCFDTLNFDMGERRGTKALE-MWCQCNSDPCFDTLDFDMGERRGTKALEMWC 70
++A F +N + R G K + + + D R G A+ +
Sbjct: 32 PELQKANPIAFVEINEEDAARTGIKHGDSVIVETRRDAMELPARVSDVCRPGLIAVPFF- 90
Query: 71 RRVTEGYPGVRVDNMTSSWRD 91
P V+ + D
Sbjct: 91 ------DPKKLVNKLFLDATD 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.142 0.502
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 651,603
Number of extensions: 29232
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 45
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.4 bits)