BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4516
         (115 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
          ANTIPORTER
 pdb|3ND0|B Chain B, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
          ANTIPORTER
 pdb|3Q17|A Chain A, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
          CYANOBACTERIUM IN Bromide
 pdb|3Q17|B Chain B, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
          CYANOBACTERIUM IN Bromide
          Length = 466

 Score = 28.1 bits (61), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 39 TGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKTSWLGLGLILGPIVATMLYIQK 91
          TG  G  F  A+   +   +   +   P P  +WL   LI G +VA   ++ K
Sbjct: 42 TGVLGAGFKSAVNNMLQWRSQLAQILAPIPPLAWLVTALISGGMVALSFWLMK 94


>pdb|2C6J|A Chain A, Structure Of P. Knowlesi Dbl Domain Capable Of Binding
           Human Duffy Antigen
          Length = 338

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 44  VLFDPAMQRYMTMSTNRYRYFKPTPKTSWLGLG----LILGPIVATMLYIQKTKDDDEHQ 99
           +++D A++  + +  N Y+Y K   K    GLG    +I+G  +  + Y Q  +++    
Sbjct: 75  LMYDAAVEGDLLLKKNNYQYNKEFCKDIRWGLGDFGDIIMGTNMEGIGYSQVVENNLRSI 134

Query: 100 LRTGQVAYRDR---WNK 113
             T + A +DR   WN+
Sbjct: 135 FGTDEKAKQDRKQWWNE 151


>pdb|4B63|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida) Bound To Nadp
           And Ornithine
 pdb|4B64|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida) Bound To Nadp
           And Lysine
 pdb|4B65|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Reduced State
           Bound To Nadp(H)
 pdb|4B66|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Reduced State
           Bound To Nadp And Arg
 pdb|4B67|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Re-Oxidised
           State Bound To Nadp And Ornithine
 pdb|4B68|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida), Re-Oxidised
           State Bound To Nadp And Arg
 pdb|4B69|A Chain A, A. Fumigatus Ornithine Hydroxylase (Sida) Bound To
           Ornithine
          Length = 501

 Score = 26.2 bits (56), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 12/94 (12%)

Query: 6   PSNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFK 65
           P++   L  + + MR +    F+ +++NP R              + Y   +  R R   
Sbjct: 270 PNSRTTLIMRDSAMRPSDDSPFVNEIFNPER------------VDKFYSQSAAERQRSLL 317

Query: 66  PTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQ 99
               T++  + L L   +   +Y+Q+ K+ DE Q
Sbjct: 318 ADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQ 351


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,687,301
Number of Sequences: 62578
Number of extensions: 140396
Number of successful extensions: 288
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 3
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)