BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4516
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48305|NDUB4_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 OS=Bos
taurus GN=NDUFB4 PE=1 SV=2
Length = 129
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 7 SNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFK 65
S R+ ++ +R L+ E+ Q Y+P R GV+ DPA+ R+ S N Y F+
Sbjct: 27 SETRKAQAERLAIRSRLKREYQLQYYDPSRR-----GVIEDPALVRWTYARSANIYPNFR 81
Query: 66 PTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
P KTS LG +GP+V + +D E ++ G++
Sbjct: 82 PNTKTSLLGALFGIGPLVFWYYVFKTDRDRKEKLIQEGKL 121
>sp|P0CB71|NDUB4_PONPY NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
OS=Pongo pygmaeus GN=NDUFB4 PE=2 SV=1
Length = 129
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 14/101 (13%)
Query: 15 KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFKPTPKTSWL 73
++ +R L+ E++ Q +P+R G++ +PA+ R+ +TN Y F+PTPK S +
Sbjct: 35 ERLAIRAQLKREYLLQYNDPNRR-----GLIENPALLRWAYARTTNVYPNFRPTPKNSLM 89
Query: 74 GLGLILGPIVATMLYIQKTKDDDEHQL-------RTGQVAY 107
G GP++ + YI KT+ D + +L RT Q++Y
Sbjct: 90 GALYGFGPLI-FIYYIIKTERDRKEKLIQEGKLDRTFQLSY 129
>sp|P0CB72|NDUB4_PONAB NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
OS=Pongo abelii GN=NDUFB4 PE=2 SV=1
Length = 129
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 15 KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFKPTPKTSWL 73
++ +R L+ E++ Q +P+R G++ +PA+ R+ +TN Y F+PTPK S +
Sbjct: 35 ERLAIRAQLKREYLLQYNDPNRR-----GLIENPALLRWAYARTTNVYPNFRPTPKNSLM 89
Query: 74 GLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
G GP++ I+ +D E ++ G++
Sbjct: 90 GALYGFGPLIFIYYIIKTERDRKEKLIQEGKL 121
>sp|Q0MQD5|NDUB4_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 OS=Pan
troglodytes GN=NDUFB4 PE=2 SV=3
Length = 129
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 15 KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMST-NRYRYFKPTPKTSWL 73
++ +R L+ E++ Q +P+R G++ +PA+ R+ T N Y F+PTPK S +
Sbjct: 35 ERLAIRAQLKREYLLQYNDPNRR-----GLIENPALLRWAYARTINVYPNFRPTPKNSLM 89
Query: 74 GLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
G GP++ I+ +D E ++ G++
Sbjct: 90 GALCGFGPLIFIYYIIKTERDRKEKLIQEGKL 121
>sp|O95168|NDUB4_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 OS=Homo
sapiens GN=NDUFB4 PE=1 SV=3
Length = 129
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 15 KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMST-NRYRYFKPTPKTSWL 73
++ +R L+ E++ Q +P+R G++ +PA+ R+ T N Y F+PTPK S +
Sbjct: 35 ERLAIRAQLKREYLLQYNDPNRR-----GLIENPALLRWAYARTINVYPNFRPTPKNSLM 89
Query: 74 GLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
G GP++ I+ +D E ++ G++
Sbjct: 90 GALCGFGPLIFIYYIIKTERDRKEKLIQEGKL 121
>sp|Q0MQD4|NDUB4_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
OS=Gorilla gorilla gorilla GN=NDUFB4 PE=2 SV=3
Length = 129
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 15 KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMST-NRYRYFKPTPKTSWL 73
++ +R L+ E++ Q +P+R G++ +PA+ R+ T N Y F+PTPK S +
Sbjct: 35 ERLAIRAQLKREYLLQYNDPNRR-----GLIENPALLRWAYARTINVYPNFRPTPKNSLM 89
Query: 74 GLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
G GP++ I+ +D E ++ G++
Sbjct: 90 GALCGFGPLIFIYYIIKTERDRKEKLIQEGKL 121
>sp|Q9CQC7|NDUB4_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 OS=Mus
musculus GN=Ndufb4 PE=1 SV=3
Length = 129
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 4 CDPSNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYR 62
P R E+ + +R L+ E++ Q +P R + E DPA+ R+ S N Y
Sbjct: 25 VSPETRRAQVERLS-IRARLKREYLLQYNDPKRVSHIE-----DPALIRWTYARSANIYP 78
Query: 63 YFKPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
F+PTPK S LG GP++ + +D E ++ G++
Sbjct: 79 NFRPTPKNSLLGAVAGFGPLIFWYYVFKTDRDRKERLIQEGKL 121
>sp|P48306|NDUB4_CHICK NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
OS=Gallus gallus GN=NDUFB4 PE=3 SV=2
Length = 133
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 2 ASCDPSNMRELFEKK------TKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMT 55
A DP+ EK+ +R L+ +++ Q+ P V+ DPA+ R+
Sbjct: 23 AELDPATYDTPLEKRRAEAERLAIRARLKRQYLLQLNTPK-----PPRVIEDPALLRWDY 77
Query: 56 MST-NRYRYFKPTPKTSWLGLGLILGPIV 83
T N Y F+PTPKTS+LG +GPI+
Sbjct: 78 ARTHNVYPTFRPTPKTSFLGAVFAIGPIL 106
>sp|Q9Z6M6|AAXA_CHLPN Porin AaxA OS=Chlamydia pneumoniae GN=aaxA PE=1 SV=1
Length = 438
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 7 SNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKP 66
SN+ EK T +++L + Q + PH+ A G+ L P+ Q Y + ST Y P
Sbjct: 80 SNLLTSVEKATNTQISLDFSILPQWFYPHK-ALGQTQALEIPSWQFYFSPSTTWTLYDSP 138
Query: 67 T 67
T
Sbjct: 139 T 139
>sp|Q9CQY9|NDUC1_MOUSE NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial OS=Mus
musculus GN=Ndufc1 PE=3 SV=1
Length = 76
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 45 LFDPAMQRYMTMSTNRYRYFKPTP---KTSWLGLGLILGPIVATMLYIQKTKDDD--EHQ 99
L PA R + S+ R +++ P K +WL +GL +G V +Y+ +T ++D E++
Sbjct: 13 LLAPA--RLPSCSSTRSKFYVREPVNAKPNWLAVGLSVGASVFMWIYLIQTHNEDVLEYK 70
Query: 100 LRTG 103
R G
Sbjct: 71 RRNG 74
>sp|Q02376|NDUC1_BOVIN NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial OS=Bos
taurus GN=NDUFC1 PE=1 SV=1
Length = 76
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 45 LFDPAMQRYMTMSTNRYRYF---KPTPKTSWLGLGLILGPIVATMLYIQKTKDDD--EHQ 99
L PA R+ ++S++R +++ P +WL +GL LG V +Y+ K ++D E++
Sbjct: 13 LLAPA--RFPSVSSSRSKFYIQEPPHGSPNWLKVGLTLGTSVFLWIYLIKQHNEDVLEYK 70
Query: 100 LRTG 103
R G
Sbjct: 71 RRNG 74
>sp|Q6AL81|DAPAT_DESPS LL-diaminopimelate aminotransferase OS=Desulfotalea psychrophila
(strain LSv54 / DSM 12343) GN=dapL PE=3 SV=2
Length = 408
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 2 ASCDPSNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRY 61
A CD SN++E+F +TK+ + + + VY G G+ D Q + + + +
Sbjct: 108 AKCDTSNIQEIFSAETKIAIP---DPVYPVYLDTNVMAGRTGLFADGRYQNIVYLDSTKE 164
Query: 62 RYFKPTPKTSWLGL 75
F P T + L
Sbjct: 165 NNFVPELPTEKVDL 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,840,061
Number of Sequences: 539616
Number of extensions: 1781854
Number of successful extensions: 3243
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3233
Number of HSP's gapped (non-prelim): 14
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)