Query psy4516
Match_columns 115
No_of_seqs 105 out of 144
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 19:10:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cxz_B Protein (PKN); protein- 42.0 17 0.00059 24.1 2.5 28 2-29 13-40 (86)
2 1m46_B IQ4, IQ4 motif from MYO 39.8 28 0.00095 18.1 2.6 18 14-31 8-25 (26)
3 3tgu_G UQCRQ, mitochondrial ub 38.5 20 0.00067 23.4 2.3 36 69-104 39-74 (81)
4 1pp9_G Ubiquinol-cytochrome C 32.9 27 0.00093 22.6 2.3 32 71-102 41-72 (81)
5 3cx5_H Cytochrome B-C1 complex 32.8 24 0.00083 23.6 2.1 33 69-101 49-81 (93)
6 3arc_X Photosystem II PSBX pro 32.6 26 0.0009 20.1 1.9 13 66-78 4-16 (39)
7 3bz1_X Photosystem II PSBX pro 27.8 39 0.0013 20.4 2.2 14 65-78 13-26 (50)
8 2hep_A UPF0291 protein YNZC; S 26.2 32 0.0011 22.8 1.8 28 20-48 30-57 (85)
9 1hry_A Human SRY; DNA, DNA-bin 22.1 1.2E+02 0.0041 17.9 3.8 25 5-32 45-70 (76)
10 2jvd_A UPF0291 protein YNZC; s 20.9 46 0.0016 20.3 1.6 18 20-37 30-47 (54)
11 3s8f_C Cytochrome C oxidase po 20.7 1E+02 0.0036 17.0 2.9 23 66-88 3-26 (34)
No 1
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=42.04 E-value=17 Score=24.10 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=22.9
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy4516 2 ASCDPSNMRELFEKKTKMRMALREEFIK 29 (115)
Q Consensus 2 ~~~~~~~e~~~~~~r~~~R~~Lk~eYlk 29 (115)
..||++-+.+....|+.||.++++|..-
T Consensus 13 ~~~d~~~q~~le~~r~~ir~eI~KElKi 40 (86)
T 1cxz_B 13 DLAAPGVQQQLELERERLRREIRKELKL 40 (86)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3588888888889999999988888643
No 2
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=39.84 E-value=28 Score=18.07 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy4516 14 EKKTKMRMALREEFIKQV 31 (115)
Q Consensus 14 ~~r~~~R~~Lk~eYlkq~ 31 (115)
--+.++|.+||+.-+||.
T Consensus 8 nlqkkirkelkqrqlkqe 25 (26)
T 1m46_B 8 NLQKKIRKELKQRQLKQE 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 446679999999888875
No 3
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=38.52 E-value=20 Score=23.42 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=24.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcccchhhhhhhhCc
Q psy4516 69 KTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQ 104 (115)
Q Consensus 69 rta~~~~~~~vvP~~~~~~v~kt~rd~~e~~~r~G~ 104 (115)
|.+.-.+++++.|+++.+++..--.++.|.+.+.--
T Consensus 39 RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKnp 74 (81)
T 3tgu_G 39 RRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNP 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCG
T ss_pred HHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 445566777788877777777766777776665443
No 4
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=32.86 E-value=27 Score=22.65 Aligned_cols=32 Identities=19% Similarity=0.097 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccchhhhhhhh
Q psy4516 71 SWLGLGLILGPIVATMLYIQKTKDDDEHQLRT 102 (115)
Q Consensus 71 a~~~~~~~vvP~~~~~~v~kt~rd~~e~~~r~ 102 (115)
+.-.+++++.|+++.+++..--.+..|.+.+.
T Consensus 41 ~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rK 72 (81)
T 1pp9_G 41 TRACILRVAPPFVAFYLVYTWGTQEFEKSKRK 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHhcceeeehhHHHHHHHHHHHHHHHHHHhCC
Confidence 34455577788777777776556666665543
No 5
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=32.80 E-value=24 Score=23.60 Aligned_cols=33 Identities=9% Similarity=0.015 Sum_probs=20.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcccchhhhhhh
Q psy4516 69 KTSWLGLGLILGPIVATMLYIQKTKDDDEHQLR 101 (115)
Q Consensus 69 rta~~~~~~~vvP~~~~~~v~kt~rd~~e~~~r 101 (115)
|.+.-.+++++.|+++.+++..--.++.|.+.+
T Consensus 49 RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l~~ 81 (93)
T 3cx5_H 49 RRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLYS 81 (93)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhcceEEechHhHHHHHHHHHHHHHHHHhc
Confidence 444445567788877777777655666665543
No 6
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=32.59 E-value=26 Score=20.09 Aligned_cols=13 Identities=31% Similarity=0.312 Sum_probs=9.6
Q ss_pred ecCchhhHHHHHH
Q psy4516 66 PTPKTSWLGLGLI 78 (115)
Q Consensus 66 ~Tprta~~~~~~~ 78 (115)
|+-++.+.+++.+
T Consensus 4 pSL~nFl~Sl~aG 16 (39)
T 3arc_X 4 PSLKGFFIGLLSG 16 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 5567778888877
No 7
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=27.84 E-value=39 Score=20.39 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=10.5
Q ss_pred eecCchhhHHHHHH
Q psy4516 65 KPTPKTSWLGLGLI 78 (115)
Q Consensus 65 R~Tprta~~~~~~~ 78 (115)
-|+-++.+.+++.|
T Consensus 13 TpSL~NFl~SlvaG 26 (50)
T 3bz1_X 13 TPSLKGFFIGLLSG 26 (50)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 46667888888888
No 8
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=26.23 E-value=32 Score=22.77 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCH
Q psy4516 20 RMALREEFIKQVYNPHRHATGEGGVLFDP 48 (115)
Q Consensus 20 R~~Lk~eYlkq~~nP~r~~~~e~~l~~DP 48 (115)
+++||++|+...-.-++.- =++.-+.||
T Consensus 30 Q~~LR~eYl~~fR~~~r~~-L~~ikivD~ 57 (85)
T 2hep_A 30 QQKLRQEYLKGFRSSMKNT-LKSVKIIDP 57 (85)
T ss_dssp HHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHH-hcceeEECC
Confidence 4568999998877777652 333345554
No 9
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=22.08 E-value=1.2e+02 Score=17.95 Aligned_cols=25 Identities=4% Similarity=-0.084 Sum_probs=15.6
Q ss_pred CCChHHHHH-HHHHHHHHHHHHHHHHHhc
Q psy4516 5 DPSNMRELF-EKKTKMRMALREEFIKQVY 32 (115)
Q Consensus 5 ~~~~e~~~~-~~r~~~R~~Lk~eYlkq~~ 32 (115)
++|+|.+.. .+.++ .+|++|.+++-
T Consensus 45 ~ls~~eK~~y~~~A~---~~k~~y~~~~~ 70 (76)
T 1hry_A 45 MLTEAEKWPFFQEAQ---KLQAMHREKYP 70 (76)
T ss_dssp TCCHHHHHHHHHHHH---HHHHHHHHHSS
T ss_pred hCCHHHHHHHHHHHH---HHHHHHHHHCC
Confidence 355555544 66664 57888887653
No 10
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=20.95 E-value=46 Score=20.28 Aligned_cols=18 Identities=22% Similarity=0.432 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhcCCCCC
Q psy4516 20 RMALREEFIKQVYNPHRH 37 (115)
Q Consensus 20 R~~Lk~eYlkq~~nP~r~ 37 (115)
+++||++|+...-.-++.
T Consensus 30 Q~~LR~eYl~~fR~~~r~ 47 (54)
T 2jvd_A 30 QQKLRQEYLKGFRSSMKL 47 (54)
T ss_dssp HHHHHHHHHTTCCCTTTT
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 456999999887777665
No 11
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=20.66 E-value=1e+02 Score=16.95 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=13.1
Q ss_pred ecCchhhHHHHHH-HHHHHHHHHH
Q psy4516 66 PTPKTSWLGLGLI-LGPIVATMLY 88 (115)
Q Consensus 66 ~Tprta~~~~~~~-vvP~~~~~~v 88 (115)
++|+.++.+++.+ +.-+++|..+
T Consensus 3 ~~l~GTl~~V~ilg~~I~i~W~~v 26 (34)
T 3s8f_C 3 EKPKGALAVILVLTLTILVFWLGV 26 (34)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceehHHHHHHHHHHHHHHHH
Confidence 5778887777666 3433444443
Done!