Query psy4516
Match_columns 115
No_of_seqs 105 out of 144
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 19:10:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4516.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4516hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cxzb_ a.2.6.1 (B:) Protein k 49.7 9.4 0.00068 23.9 3.8 27 2-28 10-39 (86)
2 d2axtm1 f.23.35.1 (M:1-36) Pho 29.3 20 0.0015 18.8 2.4 16 72-87 9-24 (36)
3 d2hepa1 a.2.21.1 (A:1-42) Hypo 23.5 20 0.0014 19.5 1.7 10 21-30 31-40 (42)
4 d3cx5h1 f.23.13.1 (H:2-94) Ubi 22.3 23 0.0017 22.2 2.1 33 66-98 46-78 (93)
5 d2lefa_ a.21.1.1 (A:) Lymphoid 21.6 54 0.004 18.9 3.8 26 5-33 43-69 (86)
6 d2cuqa2 g.39.1.3 (A:8-42) Four 20.7 10 0.00073 20.1 0.0 15 98-112 16-30 (35)
7 d1ivsa1 a.2.7.3 (A:797-862) Va 19.1 62 0.0045 17.9 3.5 30 5-35 1-31 (66)
8 d2d8za1 g.39.1.3 (A:8-32) Four 18.9 9.9 0.00072 18.8 -0.2 15 98-112 6-20 (26)
9 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 18.3 70 0.0051 18.3 3.7 26 5-33 43-69 (80)
10 d1i11a_ a.21.1.1 (A:) Sox-5 {M 17.7 28 0.002 19.5 1.6 24 5-31 43-67 (70)
No 1
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.72 E-value=9.4 Score=23.88 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=18.6
Q ss_pred CCCCCCh---HHHHHHHHHHHHHHHHHHHH
Q psy4516 2 ASCDPSN---MRELFEKKTKMRMALREEFI 28 (115)
Q Consensus 2 ~~~~~~~---e~~~~~~r~~~R~~Lk~eYl 28 (115)
+.||+++ .++....|+.||.++++|..
T Consensus 10 ~~~d~~~~~~q~~le~~r~~lr~eI~KELK 39 (86)
T d1cxzb_ 10 AGADLAAPGVQQQLELERERLRREIRKELK 39 (86)
T ss_dssp TTSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788776 34555777877777777754
No 2
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=29.25 E-value=20 Score=18.84 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHH
Q psy4516 72 WLGLGLILGPIVATML 87 (115)
Q Consensus 72 ~~~~~~~vvP~~~~~~ 87 (115)
.-+++|+++|-.++..
T Consensus 9 iAt~LFilvPt~FLli 24 (36)
T d2axtm1 9 IATALFVLVPSVFLII 24 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456677888544443
No 3
>d2hepa1 a.2.21.1 (A:1-42) Hypothetical protein YnzC {Bacillus subtilis [TaxId: 1423]}
Probab=23.51 E-value=20 Score=19.53 Aligned_cols=10 Identities=40% Similarity=0.757 Sum_probs=7.9
Q ss_pred HHHHHHHHHH
Q psy4516 21 MALREEFIKQ 30 (115)
Q Consensus 21 ~~Lk~eYlkq 30 (115)
+.||+||++.
T Consensus 31 ~~LR~eYl~~ 40 (42)
T d2hepa1 31 QKLRQEYLKG 40 (42)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3589999975
No 4
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.29 E-value=23 Score=22.21 Aligned_cols=33 Identities=9% Similarity=0.001 Sum_probs=19.4
Q ss_pred ecCchhhHHHHHHHHHHHHHHHHHhcccchhhh
Q psy4516 66 PTPKTSWLGLGLILGPIVATMLYIQKTKDDDEH 98 (115)
Q Consensus 66 ~Tprta~~~~~~~vvP~~~~~~v~kt~rd~~e~ 98 (115)
=|-|...-.+++++.|+++.+++..--+++.|.
T Consensus 46 N~~RR~r~q~lyv~PPfi~~Y~iy~Wa~~~ne~ 78 (93)
T d3cx5h1 46 NSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEF 78 (93)
T ss_dssp SCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhceEEcchHHHHHHHHHHHHHHHHH
Confidence 345566667777777766666665433444443
No 5
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.55 E-value=54 Score=18.92 Aligned_cols=26 Identities=8% Similarity=-0.073 Sum_probs=18.0
Q ss_pred CCChHHHHH-HHHHHHHHHHHHHHHHHhcC
Q psy4516 5 DPSNMRELF-EKKTKMRMALREEFIKQVYN 33 (115)
Q Consensus 5 ~~~~e~~~~-~~r~~~R~~Lk~eYlkq~~n 33 (115)
++|+|.+.. .+.++ ++|++|.++.-+
T Consensus 43 ~ls~~eK~~y~~~A~---~~k~~~~~~~p~ 69 (86)
T d2lefa_ 43 ALSREEQAKYYELAR---KERQLHMQLYPG 69 (86)
T ss_dssp TSCHHHHHHHHHHHH---HHHHHHHHHSTT
T ss_pred hCCHHHHHHHHHHHH---HHHHHHHHHCcC
Confidence 466666666 66664 688999888544
No 6
>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.69 E-value=10 Score=20.08 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=12.2
Q ss_pred hhhhhCccccccccc
Q psy4516 98 HQLRTGQVAYRDRWN 112 (115)
Q Consensus 98 ~~~r~G~i~y~dR~f 112 (115)
+-|.+|-|+|+|.+.
T Consensus 16 k~It~GGvtY~dqpW 30 (35)
T d2cuqa2 16 KTLTQGGVTYRDQPW 30 (35)
T ss_dssp CCCCSCCEESSSSEE
T ss_pred CccccCceeecCCcc
Confidence 357899999999864
No 7
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=19.12 E-value=62 Score=17.90 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=18.1
Q ss_pred CCChHHHHH-HHHHHHHHHHHHHHHHHhcCCC
Q psy4516 5 DPSNMRELF-EKKTKMRMALREEFIKQVYNPH 35 (115)
Q Consensus 5 ~~~~e~~~~-~~r~~~R~~Lk~eYlkq~~nP~ 35 (115)
|++.|..+. .+...+...+ .-..+.++||-
T Consensus 1 D~~~E~~RL~K~l~kl~~~i-~~~~~kL~N~~ 31 (66)
T d1ivsa1 1 DVEEWRRRQEKRLKELLALA-ERSQRKLASPG 31 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHTSTT
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHCChH
Confidence 667777776 4444444444 44667777775
No 8
>d2d8za1 g.39.1.3 (A:8-32) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.89 E-value=9.9 Score=18.79 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=12.2
Q ss_pred hhhhhCccccccccc
Q psy4516 98 HQLRTGQVAYRDRWN 112 (115)
Q Consensus 98 ~~~r~G~i~y~dR~f 112 (115)
+-|-+|-|.|+|.+.
T Consensus 6 K~ItsGGvtY~~~PW 20 (26)
T d2d8za1 6 KPITTGGVTYREQPW 20 (26)
T ss_dssp CBCCSSEEESSSSEE
T ss_pred cceecCceeecCCcc
Confidence 357899999999864
No 9
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.28 E-value=70 Score=18.29 Aligned_cols=26 Identities=19% Similarity=0.057 Sum_probs=18.0
Q ss_pred CCChHHHHH-HHHHHHHHHHHHHHHHHhcC
Q psy4516 5 DPSNMRELF-EKKTKMRMALREEFIKQVYN 33 (115)
Q Consensus 5 ~~~~e~~~~-~~r~~~R~~Lk~eYlkq~~n 33 (115)
++|+|.+.. +++++ .+|++|.++.-+
T Consensus 43 ~l~~eeK~~y~~~A~---~~k~~y~~~~p~ 69 (80)
T d1gt0d_ 43 LLSETEKRPFIDEAK---RLRALHMKEHPD 69 (80)
T ss_dssp TSCHHHHHHHHHHHH---HHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHH---HHHHHHHHHCcc
Confidence 456666666 77765 688899888543
No 10
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.66 E-value=28 Score=19.52 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=15.1
Q ss_pred CCChHHHHH-HHHHHHHHHHHHHHHHHh
Q psy4516 5 DPSNMRELF-EKKTKMRMALREEFIKQV 31 (115)
Q Consensus 5 ~~~~e~~~~-~~r~~~R~~Lk~eYlkq~ 31 (115)
++|+|.+.. .++++ .+|.+|.++.
T Consensus 43 ~ls~~eK~~y~~~A~---~~k~~~~~~~ 67 (70)
T d1i11a_ 43 AMTNLEKQPYYEEQA---RLSKQHLEKY 67 (70)
T ss_dssp TSCSGGGHHHHHHHH---HHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHH---HHHHHHHHHC
Confidence 456666555 77664 5778886543
Done!