Your job contains 1 sequence.
>psy4516
MASCDPSNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNR
YRYFKPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4516
(115 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0033961 - symbol:CG12859 species:7227 "Drosophila ... 235 9.2e-20 1
UNIPROTKB|F1NRG2 - symbol:NDUFB4 "NADH dehydrogenase [ubi... 118 2.3e-07 1
UNIPROTKB|G1K1S9 - symbol:NDUFB4 "NADH dehydrogenase [ubi... 116 3.8e-07 1
UNIPROTKB|P48305 - symbol:NDUFB4 "NADH dehydrogenase [ubi... 116 3.8e-07 1
UNIPROTKB|F1PXL3 - symbol:NDUFB4 "Uncharacterized protein... 116 3.8e-07 1
UNIPROTKB|I3LPW0 - symbol:NDUFB4 "Uncharacterized protein... 116 3.8e-07 1
RGD|1596239 - symbol:LOC687864 "similar to NADH dehydroge... 115 4.8e-07 1
ASPGD|ASPL0000060251 - symbol:AN0630 species:162425 "Emer... 111 1.3e-06 1
RGD|1582944 - symbol:LOC688963 "similar to NADH dehydroge... 110 1.6e-06 1
UNIPROTKB|O95168 - symbol:NDUFB4 "NADH dehydrogenase [ubi... 107 3.4e-06 1
UNIPROTKB|F1NRG4 - symbol:NDUFB4 "NADH dehydrogenase [ubi... 106 4.3e-06 1
RGD|2319146 - symbol:LOC100361934 "NADH dehydrogenase (ub... 106 4.3e-06 1
RGD|1560088 - symbol:RGD1560088 "similar to NADH:ubiquino... 104 7.0e-06 1
RGD|1560413 - symbol:Ndufb4l1 "NADH dehydrogenase (ubiqui... 104 7.0e-06 1
UNIPROTKB|D4A1K9 - symbol:D4A1K9 "Uncharacterized protein... 104 7.0e-06 1
WB|WBGene00012166 - symbol:nuo-6 species:6239 "Caenorhabd... 104 7.0e-06 1
UNIPROTKB|E1BMY1 - symbol:E1BMY1 "Uncharacterized protein... 103 9.0e-06 1
UNIPROTKB|P48306 - symbol:NDUFB4 "NADH dehydrogenase [ubi... 102 1.1e-05 1
UNIPROTKB|D4AD47 - symbol:D4AD47 "Uncharacterized protein... 99 2.4e-05 1
ZFIN|ZDB-GENE-040426-1973 - symbol:ndufb4 "NADH dehydroge... 98 3.0e-05 1
RGD|1307072 - symbol:Ndufb4 "NADH dehydrogenase (ubiquino... 94 8.1e-05 1
>FB|FBgn0033961 [details] [associations]
symbol:CG12859 species:7227 "Drosophila melanogaster"
[GO:0003954 "NADH dehydrogenase activity" evidence=ISS] [GO:0006120
"mitochondrial electron transport, NADH to ubiquinone"
evidence=ISS] [GO:0005747 "mitochondrial respiratory chain complex
I" evidence=ISS] [GO:0008137 "NADH dehydrogenase (ubiquinone)
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR009866 Pfam:PF07225 EMBL:AE013599 GO:GO:0005739
GO:GO:0008137 KO:K03960 EMBL:BT014650 RefSeq:NP_610985.1
UniGene:Dm.30920 STRING:Q6IDF5 EnsemblMetazoa:FBtr0087440
GeneID:36640 KEGG:dme:Dmel_CG12859 UCSC:CG12859-RA
FlyBase:FBgn0033961 eggNOG:NOG46063 InParanoid:Q6IDF5 OMA:HATGEGG
OrthoDB:EOG40VT63 GenomeRNAi:36640 NextBio:799642 Uniprot:Q6IDF5
Length = 113
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 45/106 (42%), Positives = 67/106 (63%)
Query: 10 RELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPK 69
+E ++K + + LR+EF+KQ NP+RHATGEGG +FD + R+ M + Y +FKPT K
Sbjct: 8 QEFIKRKHEATLKLRQEFLKQSSNPYRHATGEGGTVFDAGLARFQAMRVSNYEHFKPTGK 67
Query: 70 TSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL 115
+ GL ++ PI ++ +D E + RTGQVAY+DR KF+
Sbjct: 68 SFRTGLFAVVLPIALYAWALKAERDGREEKYRTGQVAYKDRQFKFI 113
>UNIPROTKB|F1NRG2 [details] [associations]
symbol:NDUFB4 "NADH dehydrogenase [ubiquinone] 1 beta
subcomplex subunit 4" species:9031 "Gallus gallus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008137 "NADH dehydrogenase
(ubiquinone) activity" evidence=IEA] InterPro:IPR009866
Pfam:PF07225 GO:GO:0005739 GO:GO:0008137 PANTHER:PTHR15469
OMA:EYDISPE GeneTree:ENSGT00390000007133 EMBL:AADN02037932
IPI:IPI00812364 Ensembl:ENSGALT00000024145 ArrayExpress:F1NRG2
Uniprot:F1NRG2
Length = 130
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 34/105 (32%), Positives = 55/105 (52%)
Query: 2 ASCDPS-NMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMST-N 59
A+ D S R ++ +R L+ +++ Q+ NP A V+ DPA+ R+ T N
Sbjct: 23 ATYDTSLEKRRAEAERLAIRARLKRQYLLQLNNPKPPA-----VIEDPALLRWDYARTHN 77
Query: 60 RYRYFKPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQ 104
Y F+PTPKTS+LG +GPI+ + + +D E +R G+
Sbjct: 78 VYPTFRPTPKTSFLGAVFAIGPILFWIAAFKTERDYKEKLIREGK 122
>UNIPROTKB|G1K1S9 [details] [associations]
symbol:NDUFB4 "NADH dehydrogenase [ubiquinone] 1 beta
subcomplex subunit 4" species:9913 "Bos taurus" [GO:0008137 "NADH
dehydrogenase (ubiquinone) activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR009866 Pfam:PF07225
GO:GO:0005739 GO:GO:0008137 UniGene:Bt.49223 UniGene:Bt.60768
PANTHER:PTHR15469 OMA:EYDISPE GeneTree:ENSGT00390000007133
EMBL:DAAA02001564 Ensembl:ENSBTAT00000021123 Uniprot:G1K1S9
Length = 129
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 7 SNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFK 65
S R+ ++ +R L+ E+ Q Y+P R GV+ DPA+ R+ S N Y F+
Sbjct: 27 SETRKAQAERLAIRSRLKREYQLQYYDPSRR-----GVIEDPALVRWTYARSANIYPNFR 81
Query: 66 PTPKTSWLGLGLILGPIVATMLYIQKT-KDDDEHQLRTGQV 105
P KTS LG +GP+V Y+ KT +D E ++ G++
Sbjct: 82 PNTKTSLLGALFGIGPLVF-WYYVFKTDRDRKEKLIQEGKL 121
>UNIPROTKB|P48305 [details] [associations]
symbol:NDUFB4 "NADH dehydrogenase [ubiquinone] 1 beta
subcomplex subunit 4" species:9913 "Bos taurus" [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0070469
"respiratory chain" evidence=IEA] [GO:0022900 "electron transport
chain" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0008137 "NADH dehydrogenase (ubiquinone)
activity" evidence=IEA] InterPro:IPR009866 Pfam:PF07225
GO:GO:0016021 GO:GO:0006979 GO:GO:0005743 GO:GO:0022900
GO:GO:0070469 TCDB:3.D.1.6.1 GO:GO:0008137 EMBL:X64898
EMBL:AB098753 EMBL:BC103187 IPI:IPI00712677 PIR:S28237
RefSeq:NP_787016.1 UniGene:Bt.49223 UniGene:Bt.60768 IntAct:P48305
STRING:P48305 PRIDE:P48305 GeneID:327706 KEGG:bta:327706 CTD:4710
eggNOG:NOG17910 HOGENOM:HOG000060241 HOVERGEN:HBG001159
InParanoid:P48305 KO:K03960 OrthoDB:EOG49KFRZ NextBio:20810170
PANTHER:PTHR15469 Uniprot:P48305
Length = 129
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 7 SNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFK 65
S R+ ++ +R L+ E+ Q Y+P R GV+ DPA+ R+ S N Y F+
Sbjct: 27 SETRKAQAERLAIRSRLKREYQLQYYDPSRR-----GVIEDPALVRWTYARSANIYPNFR 81
Query: 66 PTPKTSWLGLGLILGPIVATMLYIQKT-KDDDEHQLRTGQV 105
P KTS LG +GP+V Y+ KT +D E ++ G++
Sbjct: 82 PNTKTSLLGALFGIGPLVF-WYYVFKTDRDRKEKLIQEGKL 121
>UNIPROTKB|F1PXL3 [details] [associations]
symbol:NDUFB4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0005747 "mitochondrial respiratory chain complex
I" evidence=IEA] [GO:0008137 "NADH dehydrogenase (ubiquinone)
activity" evidence=IEA] InterPro:IPR009866 Pfam:PF07225
GO:GO:0006979 GO:GO:0005747 GO:GO:0008137 CTD:4710 KO:K03960
PANTHER:PTHR15469 OMA:EYDISPE GeneTree:ENSGT00390000007133
EMBL:AAEX03017020 RefSeq:XP_535753.2 Ensembl:ENSCAFT00000017807
GeneID:478577 KEGG:cfa:478577 Uniprot:F1PXL3
Length = 128
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 15 KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKTSWLG 74
++ +R L+ E++ Q +P R G++ DPA+ R+ +N Y F+PTPKTS LG
Sbjct: 35 ERLAIRSRLKREYLLQYNDPSRR-----GLIEDPALIRWTYARSNIYPNFRPTPKTSLLG 89
Query: 75 LGLILGPIVATMLYIQKT-KDDDEHQLRTGQV 105
+GP+ Y+ KT +D E ++ G++
Sbjct: 90 ALFGIGPLFF-WFYVFKTDRDRKEKLIQEGKL 120
>UNIPROTKB|I3LPW0 [details] [associations]
symbol:NDUFB4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006979 "response to oxidative stress" evidence=IEA]
[GO:0005747 "mitochondrial respiratory chain complex I"
evidence=IEA] [GO:0008137 "NADH dehydrogenase (ubiquinone)
activity" evidence=IEA] InterPro:IPR009866 Pfam:PF07225
GO:GO:0006979 GO:GO:0005747 GO:GO:0008137 KO:K03960
PANTHER:PTHR15469 OMA:EYDISPE GeneTree:ENSGT00390000007133
RefSeq:XP_003361930.1 Ensembl:ENSSSCT00000029549 GeneID:100624335
KEGG:ssc:100624335 Uniprot:I3LPW0
Length = 129
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 33/98 (33%), Positives = 54/98 (55%)
Query: 10 RELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFKPTP 68
R+ ++ +R L+ E++ Q +P+R GV+ DPA+ R+ S N Y F+PTP
Sbjct: 30 RKAQAERLAIRSRLKREYLLQYNDPNRL-----GVIEDPALIRWTYARSANIYPNFRPTP 84
Query: 69 KTSWLGLGLILGPIVATMLYIQKT-KDDDEHQLRTGQV 105
KTS LG +GP+ Y+ KT +D E ++ G++
Sbjct: 85 KTSLLGALFGIGPLFF-WYYVFKTDRDKKEKLIQEGKL 121
>RGD|1596239 [details] [associations]
symbol:LOC687864 "similar to NADH dehydrogenase (ubiquinone) 1
beta subcomplex, 4, 15kDa" species:10116 "Rattus norvegicus"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0008137 "NADH
dehydrogenase (ubiquinone) activity" evidence=IEA]
InterPro:IPR009866 Pfam:PF07225 RGD:1596239 GO:GO:0005739
GO:GO:0008137 PANTHER:PTHR15469 GeneTree:ENSGT00390000007133
IPI:IPI00193082 PRIDE:F1M7Z4 Ensembl:ENSRNOT00000049123
Uniprot:F1M7Z4
Length = 129
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 15 KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFKPTPKTSWL 73
++ +R L+ E++ Q NP R E DPA+ R+ S N Y F+PTPK S L
Sbjct: 35 ERMSIRARLKREYVLQYNNPKRQMHIE-----DPALIRWTYARSANVYPNFRPTPKNSLL 89
Query: 74 GLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
G LGP++ I+ +D E ++ G++
Sbjct: 90 GAVAGLGPLIFWYYVIKTDRDKKERLIQEGKL 121
>ASPGD|ASPL0000060251 [details] [associations]
symbol:AN0630 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR009866 Pfam:PF07225 GO:GO:0005739
EMBL:BN001308 GO:GO:0008137 EnsemblFungi:CADANIAT00002047
OMA:FRWTPRT Uniprot:C8VS25
Length = 74
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 44 VLFDPAMQRYMTMSTNRYRYFKPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLR 101
++ DPA+Q+Y +++NRY+YF+ TP+T+W L L + I A++ Y+ K D ++ R
Sbjct: 8 LILDPALQKYYEVNSNRYKYFRWTPRTAWHSL-LYMVLIPASLGYVAY-KSDGKYDFR 63
>RGD|1582944 [details] [associations]
symbol:LOC688963 "similar to NADH dehydrogenase (ubiquinone) 1
beta subcomplex, 4, 15kDa" species:10116 "Rattus norvegicus"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0008137 "NADH
dehydrogenase (ubiquinone) activity" evidence=IEA]
InterPro:IPR009866 Pfam:PF07225 RGD:1582944 GO:GO:0005739
GO:GO:0008137 CTD:4710 KO:K03960 PANTHER:PTHR15469 OMA:EYDISPE
GeneTree:ENSGT00390000007133 IPI:IPI01016428 RefSeq:NP_001032415.1
UniGene:Rn.98986 PRIDE:F1LPG5 Ensembl:ENSRNOT00000003674
GeneID:288088 KEGG:rno:288088 NextBio:627569 ArrayExpress:F1LPG5
Uniprot:F1LPG5
Length = 129
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 15 KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFKPTPKTSWL 73
++ +R L+ E++ Q +P R E DPA+ R+ S N Y F+PTPK S L
Sbjct: 35 ERMSIRARLKREYLLQYNDPKRQTHIE-----DPALIRWTYARSANVYPNFRPTPKNSLL 89
Query: 74 GLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
G LGP++ I+ +D E ++ G++
Sbjct: 90 GAVAGLGPLIFWYYVIKTDRDKKERLIQEGKL 121
>UNIPROTKB|O95168 [details] [associations]
symbol:NDUFB4 "NADH dehydrogenase [ubiquinone] 1 beta
subcomplex subunit 4" species:9606 "Homo sapiens" [GO:0016021
"integral to membrane" evidence=IEA] [GO:0006120 "mitochondrial
electron transport, NADH to ubiquinone" evidence=NAS] [GO:0008137
"NADH dehydrogenase (ubiquinone) activity" evidence=NAS]
[GO:0005747 "mitochondrial respiratory chain complex I"
evidence=IDA;NAS] [GO:0006979 "response to oxidative stress"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=TAS] [GO:0022904 "respiratory electron transport chain"
evidence=TAS] [GO:0044281 "small molecule metabolic process"
evidence=TAS] Reactome:REACT_111217 InterPro:IPR009866 Pfam:PF07225
GO:GO:0016021 GO:GO:0006979 DrugBank:DB00157 GO:GO:0044281
EMBL:CH471052 GO:GO:0005747 GO:GO:0008137 GO:GO:0006120
EMBL:AC126182 CTD:4710 eggNOG:NOG17910 HOGENOM:HOG000060241
HOVERGEN:HBG001159 KO:K03960 OrthoDB:EOG49KFRZ PANTHER:PTHR15469
EMBL:AF044957 EMBL:BC000855 EMBL:BC070285 EMBL:BC146885
EMBL:BC146887 EMBL:BC146927 EMBL:BC146932 IPI:IPI00220059
IPI:IPI00815735 PIR:JE0383 RefSeq:NP_001161803.1 RefSeq:NP_004538.2
UniGene:Hs.304613 ProteinModelPortal:O95168 IntAct:O95168
STRING:O95168 PhosphoSite:O95168 PaxDb:O95168 PRIDE:O95168
DNASU:4710 Ensembl:ENST00000184266 Ensembl:ENST00000485064
GeneID:4710 KEGG:hsa:4710 UCSC:uc003edu.3 GeneCards:GC03P120315
HGNC:HGNC:7699 HPA:CAB034930 MIM:603840 neXtProt:NX_O95168
PharmGKB:PA31510 InParanoid:O95168 OMA:EYDISPE ChiTaRS:NDUFB4
GenomeRNAi:4710 NextBio:18164 ArrayExpress:O95168 Bgee:O95168
CleanEx:HS_NDUFB4 Genevestigator:O95168 GermOnline:ENSG00000065518
Uniprot:O95168
Length = 129
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 31/96 (32%), Positives = 51/96 (53%)
Query: 6 PSNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMST-NRYRYF 64
P R E+ +R L+ E++ Q +P+R G++ +PA+ R+ T N Y F
Sbjct: 27 PETRRAQAERLA-IRAQLKREYLLQYNDPNRR-----GLIENPALLRWAYARTINVYPNF 80
Query: 65 KPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQL 100
+PTPK S +G GP++ + YI KT+ D + +L
Sbjct: 81 RPTPKNSLMGALCGFGPLIF-IYYIIKTERDRKEKL 115
>UNIPROTKB|F1NRG4 [details] [associations]
symbol:NDUFB4 "NADH dehydrogenase [ubiquinone] 1 beta
subcomplex subunit 4" species:9031 "Gallus gallus" [GO:0008137
"NADH dehydrogenase (ubiquinone) activity" evidence=IEA]
[GO:0005747 "mitochondrial respiratory chain complex I"
evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] InterPro:IPR009866 Pfam:PF07225 GO:GO:0006979
GO:GO:0005747 GO:GO:0008137 PANTHER:PTHR15469
GeneTree:ENSGT00390000007133 EMBL:AADN02037932 IPI:IPI00821530
Ensembl:ENSGALT00000024143 ArrayExpress:F1NRG4 Uniprot:F1NRG4
Length = 133
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 2 ASCDPS-NMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMST-N 59
A+ D S R ++ +R L+ +++ Q+ NP A V+ DPA+ R+ T N
Sbjct: 28 ATYDTSLEKRRAEAERLAIRARLKRQYLLQLNNPKPPA-----VIEDPALLRWDYARTHN 82
Query: 60 RYRYFKPTPKTSWLGLGLILGPIV 83
Y F+PTPKTS+LG +GPI+
Sbjct: 83 VYPTFRPTPKTSFLGAVFAIGPIL 106
>RGD|2319146 [details] [associations]
symbol:LOC100361934 "NADH dehydrogenase (ubiquinone) 1 beta
subcomplex 4" species:10116 "Rattus norvegicus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008137 "NADH dehydrogenase
(ubiquinone) activity" evidence=IEA] InterPro:IPR009866
Pfam:PF07225 RGD:2319146 GO:GO:0005739 GO:GO:0008137
PANTHER:PTHR15469 GeneTree:ENSGT00390000007133 IPI:IPI00204925
RefSeq:XP_002727642.1 RefSeq:XP_002730286.1
Ensembl:ENSRNOT00000045705 GeneID:100361934 KEGG:rno:100361934
ArrayExpress:F1M7T1 Uniprot:F1M7T1
Length = 129
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 19 MRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFKPTPKTSWLGLGL 77
+R L+ E++ Q +P R E DPA+ R+ S N Y F+PTPK S LG
Sbjct: 39 IRAWLKREYLLQYNDPKRQTHIE-----DPALIRWTYARSANVYPNFRPTPKNSLLGAVA 93
Query: 78 ILGPIVATMLYIQKTKDDDEHQLRTGQV 105
LGP++ I+ +D E ++ G++
Sbjct: 94 GLGPLIFWYYVIKTDRDKKERLIQEGKL 121
>RGD|1560088 [details] [associations]
symbol:RGD1560088 "similar to NADH:ubiquinone oxidoreductase B15
subunit" species:10116 "Rattus norvegicus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008137 "NADH dehydrogenase
(ubiquinone) activity" evidence=IEA] InterPro:IPR009866
Pfam:PF07225 RGD:1560088 GO:GO:0005739 GO:GO:0008137 KO:K03960
OrthoDB:EOG49KFRZ PANTHER:PTHR15469 GeneTree:ENSGT00390000007133
IPI:IPI00208987 RefSeq:XP_001079625.1 RefSeq:XP_574423.1
Ensembl:ENSRNOT00000047207 GeneID:499131 KEGG:rno:499131
UCSC:RGD:1560088 CTD:499131 OMA:YARANVY NextBio:701931
Uniprot:D3ZQH7
Length = 129
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 15 KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFKPTPKTSWL 73
++ +R L+ E + Q +P R + DPA+ R+ S N Y F+PTPK S L
Sbjct: 35 ERMSIRAQLKREHLLQYNDPKRQTH-----IKDPALIRWTYARSANVYPNFRPTPKNSLL 89
Query: 74 GLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
G LGP++ I+ +D E ++ G++
Sbjct: 90 GAVAGLGPLIFWYYVIKTDRDKKERLIQEGKL 121
>RGD|1560413 [details] [associations]
symbol:Ndufb4l1 "NADH dehydrogenase (ubiquinone) 1 beta
subcomplex, 4-like 1" species:10116 "Rattus norvegicus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008137 "NADH dehydrogenase
(ubiquinone) activity" evidence=IEA] InterPro:IPR009866
Pfam:PF07225 RGD:1560413 GO:GO:0005739 GO:GO:0008137 KO:K03960
OrthoDB:EOG49KFRZ PANTHER:PTHR15469 GeneTree:ENSGT00390000007133
IPI:IPI00197208 RefSeq:XP_001065938.1 RefSeq:XP_577306.1
PRIDE:D3ZV29 Ensembl:ENSRNOT00000044617 GeneID:501886
KEGG:rno:501886 CTD:501886 NextBio:710114 Uniprot:D3ZV29
Length = 129
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 32/100 (32%), Positives = 49/100 (49%)
Query: 7 SNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFK 65
S R+ K +R L+ E++ Q +P A E DPA+ R S N Y F+
Sbjct: 27 SETRKAQVKHMSIRAWLKREYLLQYNDPKCQAHIE-----DPALIRCTYARSANVYPNFR 81
Query: 66 PTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
PTPK S LG+ LGP++ I+ +D E ++ G++
Sbjct: 82 PTPKNSPLGMVAGLGPLIFWYYVIKTDRDRKERLIQEGKL 121
>UNIPROTKB|D4A1K9 [details] [associations]
symbol:D4A1K9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0008137 "NADH dehydrogenase (ubiquinone) activity"
evidence=IEA] InterPro:IPR009866 Pfam:PF07225 GO:GO:0005739
GO:GO:0008137 OrthoDB:EOG49KFRZ PANTHER:PTHR15469 IPI:IPI00766908
Ensembl:ENSRNOT00000056133 Uniprot:D4A1K9
Length = 120
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 31/86 (36%), Positives = 48/86 (55%)
Query: 15 KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFKPTPKTSWL 73
++ +R L+ E++ Q YN + T + DPA+ R+ S N Y F+PTPK S L
Sbjct: 35 ERMSIRARLKREYLLQ-YNDPKCQTH----IEDPALIRWTYARSANVYPNFRPTPKNSLL 89
Query: 74 GLGLILGPIVATMLYIQKTKDDDEHQ 99
G+ LGP++ Y+ KT D D++Q
Sbjct: 90 GVVAGLGPLIF-WYYVIKT-DRDKNQ 113
>WB|WBGene00012166 [details] [associations]
symbol:nuo-6 species:6239 "Caenorhabditis elegans"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0008137 "NADH
dehydrogenase (ubiquinone) activity" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0043652
"engulfment of apoptotic cell" evidence=IMP] [GO:0044444
"cytoplasmic part" evidence=IDA] [GO:0005747 "mitochondrial
respiratory chain complex I" evidence=ISS] InterPro:IPR009866
Pfam:PF07225 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0002119 GO:GO:0010171 GO:GO:0040035 GO:GO:0005747
GO:GO:0008137 GO:GO:0043652 KO:K03960 PANTHER:PTHR15469
eggNOG:NOG274814 EMBL:Z71267 PIR:T26029 RefSeq:NP_492001.2
STRING:Q23098 PaxDb:Q23098 EnsemblMetazoa:W01A8.4 GeneID:172438
KEGG:cel:CELE_W01A8.4 UCSC:W01A8.4.1 CTD:172438 WormBase:W01A8.4
HOGENOM:HOG000019264 InParanoid:Q23098 OMA:DPAMFRW NextBio:875517
Uniprot:Q23098
Length = 172
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 25/95 (26%), Positives = 53/95 (55%)
Query: 18 KMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKTSWLGLGL 77
+++ L++E++++ Y+PH EG V DPAM R+ + + +F+ TP+T +L +G
Sbjct: 59 RVKEILKKEYLRREYDPHSFKYKEG-VTMDPAMFRWYSADMTQAEFFRFTPRTVFLYVGT 117
Query: 78 I--LGPIVATMLYIQKTKDDDEHQLRTGQVAYRDR 110
+ L I ++++ K ++ G++ + DR
Sbjct: 118 VFALFYIYTRLMFVPMDKSNEA--CLDGKLLWWDR 150
>UNIPROTKB|E1BMY1 [details] [associations]
symbol:E1BMY1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008137 "NADH dehydrogenase (ubiquinone) activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR009866 Pfam:PF07225 GO:GO:0005739 GO:GO:0008137
PANTHER:PTHR15469 EMBL:DAAA02051934 IPI:IPI00728541
Ensembl:ENSBTAT00000047409 GeneTree:ENSGT00390000007133 OMA:KAGTHAP
NextBio:20900796 Uniprot:E1BMY1
Length = 129
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 32/101 (31%), Positives = 51/101 (50%)
Query: 7 SNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFK 65
S R+ K+ +R L+ E+ Q Y+P GV+ DPA+ R+ S N Y F+
Sbjct: 27 SETRKAQAKRLAIRSRLKREYQLQHYDPSCR-----GVIEDPALVRWTYARSANIYPNFR 81
Query: 66 PTPKTSWLGLGLILGPIVATMLYIQKT-KDDDEHQLRTGQV 105
P K S LG +GP++ Y+ KT +D E ++ G++
Sbjct: 82 PNTKISLLGALFGIGPLIF-WCYVFKTDRDRKEKLIQEGKL 121
>UNIPROTKB|P48306 [details] [associations]
symbol:NDUFB4 "NADH dehydrogenase [ubiquinone] 1 beta
subcomplex subunit 4" species:9031 "Gallus gallus" [GO:0008137
"NADH dehydrogenase (ubiquinone) activity" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0022900
"electron transport chain" evidence=IEA] [GO:0070469 "respiratory
chain" evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] InterPro:IPR009866 Pfam:PF07225 GO:GO:0016021
GO:GO:0005743 GO:GO:0022900 GO:GO:0070469 GO:GO:0008137
HOGENOM:HOG000060241 HOVERGEN:HBG001159 PANTHER:PTHR15469
EMBL:X60778 EMBL:M84354 IPI:IPI00596243 PIR:A33164 PIR:JC2003
STRING:P48306 eggNOG:NOG274814 InParanoid:P48306 Uniprot:P48306
Length = 133
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 30/85 (35%), Positives = 44/85 (51%)
Query: 2 ASCDPSNMRELFEKKTKM--RMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMST- 58
A DP+ EK+ R+A+R +K+ Y + V+ DPA+ R+ T
Sbjct: 23 AELDPATYDTPLEKRRAEAERLAIRAR-LKRQYLLQLNTPKPPRVIEDPALLRWDYARTH 81
Query: 59 NRYRYFKPTPKTSWLGLGLILGPIV 83
N Y F+PTPKTS+LG +GPI+
Sbjct: 82 NVYPTFRPTPKTSFLGAVFAIGPIL 106
>UNIPROTKB|D4AD47 [details] [associations]
symbol:D4AD47 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0008137 "NADH dehydrogenase (ubiquinone) activity"
evidence=IEA] InterPro:IPR009866 Pfam:PF07225 GO:GO:0005739
GO:GO:0008137 OrthoDB:EOG49KFRZ PANTHER:PTHR15469 IPI:IPI00762938
Ensembl:ENSRNOT00000055774 Uniprot:D4AD47
Length = 120
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 31/86 (36%), Positives = 42/86 (48%)
Query: 15 KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFKPTPKTSWL 73
++ +R L E++ Q NP R E DPA+ R+ S N Y F+PTPK S L
Sbjct: 35 ERMSIRARLEREYLLQYNNPKRQTHIE-----DPALIRWTYARSANVYPNFRPTPKNSLL 89
Query: 74 GLGLILGPIVATMLYIQKTKDDDEHQ 99
G L P++ Y+ KT D D Q
Sbjct: 90 GAVAGLRPLIF-WYYVIKT-DRDRKQ 113
>ZFIN|ZDB-GENE-040426-1973 [details] [associations]
symbol:ndufb4 "NADH dehydrogenase (ubiquinone) 1
beta subcomplex, 4" species:7955 "Danio rerio" [GO:0008137 "NADH
dehydrogenase (ubiquinone) activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR009866 Pfam:PF07225
ZFIN:ZDB-GENE-040426-1973 GO:GO:0005739 GO:GO:0008137 CTD:4710
eggNOG:NOG17910 HOGENOM:HOG000060241 HOVERGEN:HBG001159 KO:K03960
OrthoDB:EOG49KFRZ PANTHER:PTHR15469 OMA:EYDISPE
GeneTree:ENSGT00390000007133 EMBL:CT574587 EMBL:BC059680
IPI:IPI00509449 RefSeq:NP_998198.1 UniGene:Dr.76125 STRING:Q6PBK0
Ensembl:ENSDART00000080510 GeneID:406306 KEGG:dre:406306
InParanoid:Q6PBK0 NextBio:20817934 Uniprot:Q6PBK0
Length = 130
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 10 RELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPK 69
R E++T +R ++ ++ Q+ NP+R E DPA+ R++ Y +F+P+ K
Sbjct: 32 RRAEEERTALRSQMKRQYQMQLNNPYRKELIE-----DPALTRWLHARNIVYPHFRPSTK 86
Query: 70 TSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTG 103
+S +G+ P+V ++ +D + ++ G
Sbjct: 87 SSLIGVAFGALPLVLLYFVLKTDRDKRDSKIDAG 120
>RGD|1307072 [details] [associations]
symbol:Ndufb4 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex
4" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR009866 Pfam:PF07225 RGD:1307072 GO:GO:0005739
GO:GO:0008137 eggNOG:NOG17910 HOGENOM:HOG000060241
OrthoDB:EOG49KFRZ PANTHER:PTHR15469 IPI:IPI01016428
UniGene:Rn.98986 EMBL:DQ255901 STRING:Q2XTA8 PRIDE:Q2XTA8
UCSC:RGD:1307072 InParanoid:Q2XTA8 ArrayExpress:Q2XTA8
Genevestigator:Q2XTA8 Uniprot:Q2XTA8
Length = 83
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 47 DPAMQRYM-TMSTNRYRYFKPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
DPA+ R+ S N Y F+PTPK S LG LGP++ I+ +D E ++ G++
Sbjct: 16 DPALIRWTYARSANVYPNFRPTPKNSLLGAVAGLGPLIFWYYVIKTDRDKKERLIQEGKL 75
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.136 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 115 115 0.00091 102 3 11 22 0.44 30
29 0.45 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 593 (63 KB)
Total size of DFA: 138 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 12.68u 0.08s 12.76t Elapsed: 00:00:18
Total cpu time: 12.68u 0.08s 12.76t Elapsed: 00:00:19
Start: Thu Aug 15 14:03:35 2013 End: Thu Aug 15 14:03:54 2013