RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4516
         (115 letters)



>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
           {Sulfolobus tokodaii}
          Length = 472

 Score = 27.1 bits (61), Expect = 1.2
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 19/52 (36%)

Query: 21  MALRE-------EFIKQ----VYNPHRHAT-------GEGGVLFDPAMQRYM 54
           +A +        EF+ Q    V +             GEG  + +   +R++
Sbjct: 195 IAFKAGTILADMEFV-QFHPTVTSLDGEVFLLTETLRGEGAQIINENGERFL 245


>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
           oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
           c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
          Length = 540

 Score = 26.8 bits (60), Expect = 1.6
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 40  GEGGVLFDPAMQRYM 54
           GEG  L  P   R+M
Sbjct: 264 GEGAYLKRPDGTRFM 278


>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA,
          national project on protein structural and functional
          analyses; NMR {Homo sapiens}
          Length = 123

 Score = 26.4 bits (58), Expect = 1.7
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 3  SCDPSNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNR 60
          +     +   F +   +     +E I  V  P    TG+  VLF         +  ++
Sbjct: 34 TATAEEVVAFFGQHCPITGG--KEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHK 89


>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
          transport protein; 3.20A {Synechocystis} PDB: 3q17_A
          Length = 466

 Score = 26.2 bits (58), Expect = 3.0
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 38 ATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKTSWLGLGLILGPIVATMLYI 89
           TG  G  F  A+   +   +   +   P P  +WL   LI G +VA   ++
Sbjct: 41 ITGVLGAGFKSAVNNMLQWRSQLAQILAPIPPLAWLVTALISGGMVALSFWL 92


>1vk5_A Expressed protein; structural genomics, unknown function, protein
          structur initiative, center for eukaryotic structural
          genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana}
          SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
          Length = 157

 Score = 25.9 bits (56), Expect = 3.2
 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 33 NPHRHATGEGGVLFDPAM-QRYMTMSTNRYRYFKPTPKTSWLGLG 76
            HR    EG +L    M Q YM             P TSW+GL 
Sbjct: 27 TSHRDVADEGSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLS 71


>2jln_A MHP1; hydantoin, transporter, membrane protein,
           nucleobase-cation-symport-1 family; 2.85A
           {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
          Length = 501

 Score = 25.9 bits (57), Expect = 3.6
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 70  TSWL-GLGLILGPIVATML---YIQKTKDDDEHQLRT--GQVAYRDRWN 112
            ++L  L   LGP+   M+   ++ + +    H L    G   Y    N
Sbjct: 360 NTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYRTKGIYTYWRGVN 408


>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national
           project on protein structural and functional analyses;
           NMR {Homo sapiens} SCOP: d.58.7.1
          Length = 124

 Score = 24.4 bits (53), Expect = 8.5
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 3   SCDPSNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLF------DPAMQRYMTM 56
             +  ++ + F+K     + + E+ I   Y P+  ATGEG V F        A+ R+   
Sbjct: 36  EAENKHVIDFFKK-----LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQY 90

Query: 57  STNRY-RYFKPTPK 69
             NR+ +    T K
Sbjct: 91  MGNRFIQVHPITKK 104


>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu
           initiative, PSI, midwest center for structural genomics;
           1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24
          Length = 332

 Score = 24.7 bits (53), Expect = 8.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 5   DPSNMRELFEKKTKMRMALREE 26
           + S+  E+ EK  +MR+ LR  
Sbjct: 304 ENSDFGEVLEKSKRMRVRLRGL 325


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,894,514
Number of extensions: 101133
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 12
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)