RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4516
         (115 letters)



>d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory
          fumarate reductase) {Shewanella frigidimarina [TaxId:
          56812]}
          Length = 143

 Score = 27.1 bits (59), Expect = 0.44
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 40 GEGGVLFDPAMQRYMTMSTNRYRY 63
          G G +L +   +R++   T R + 
Sbjct: 21 GNGAILVNREGKRFVNEITTRDKA 44


>d2hi6a1 c.8.2.3 (A:1-132) Hypothetical protein AF0055
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 132

 Score = 26.0 bits (57), Expect = 0.84
 Identities = 6/62 (9%), Positives = 16/62 (25%), Gaps = 9/62 (14%)

Query: 46  FDPAMQRYMTMSTNRYRYFKPTPKT---SWLGLGLILGPIVATMLYIQKTKDDDEHQLRT 102
              +                  PK          + +G  +A +  ++   +     ++T
Sbjct: 62  TVGSYVLLNLRKNGV------APKAIINKKTETIIAVGAAMAEIPLVEVRDEKFFEAVKT 115

Query: 103 GQ 104
           G 
Sbjct: 116 GD 117


>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 336

 Score = 26.4 bits (58), Expect = 0.87
 Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 61  YRYFKPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLR 101
            ++F      ++  L   LG +V     ++     D+  LR
Sbjct: 14  RKHFLGKEHFNYYSLDTALGHLV---FSLKYDVIGDQEHLR 51


>d1i78a_ f.4.4.1 (A:) Outer membrane protease OMPT {Escherichia coli
           [TaxId: 562]}
          Length = 297

 Score = 25.6 bits (56), Expect = 1.6
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 7/41 (17%)

Query: 72  WLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWN 112
            LG        V       ++ D+DEH    G++ YR +  
Sbjct: 193 ELGGTFKYSGWV-------ESSDNDEHYDPKGRITYRSKVK 226


>d1d4ca3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory
          fumarate reductase) {Shewanella putrefaciens [TaxId:
          24]}
          Length = 146

 Score = 24.0 bits (51), Expect = 4.9
 Identities = 4/15 (26%), Positives = 8/15 (53%)

Query: 40 GEGGVLFDPAMQRYM 54
          G G ++ +    R+M
Sbjct: 22 GNGAIVVNREGNRFM 36


>d1qo8a3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory
          fumarate reductase) {Shewanella frigidimarina [TaxId:
          56812]}
          Length = 146

 Score = 23.4 bits (49), Expect = 6.9
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 40 GEGGVLFDPAMQRYMTMSTNRYRY 63
          G G V+ +    R+++  T R + 
Sbjct: 18 GVGAVMVNKDGNRFISELTTRDKA 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 462,959
Number of extensions: 19515
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 9
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)