BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4517
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/95 (75%), Positives = 84/95 (88%)
Query: 7 RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
+R +STSG+SLY +L L K AT ++IKK YRK+ALKYHPDKNP+NPEAA+KFKEIN AH+
Sbjct: 9 QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHA 68
Query: 67 TLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFM 101
L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+
Sbjct: 69 ILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFV 103
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAE-KFKEINRAHSTLSDQTKR 74
S Y IL++P++A+ ++IKK YR+ AL++HPDKNP+N E AE KFKE+ A+ LSD+ KR
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 75 NIYDTYGSLGL 85
IYD YG GL
Sbjct: 63 EIYDRYGREGL 73
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAE-KFKEINRAHSTLSDQTKRNI 76
Y +L++P+ A+ E IKK YRK+ALK+HPDKNP N E AE +FK++ A+ LSD KR+I
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71
Query: 77 YDTYGS 82
YD YGS
Sbjct: 72 YDRYGS 77
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%)
Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRN 75
+ Y +L + KTA+ EI++ ++K+ALK HPDKNPNNP A F +INRA+ L D+ R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 76 IYDTYGSLGL 85
YD YG GL
Sbjct: 63 KYDKYGEKGL 72
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTK 73
G Y L L + A+ EEIK+ YR+ AL+YHPDKN P A EKFKEI A+ LSD K
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRK 60
Query: 74 RNIYDTYGSLGL 85
R I+D YG GL
Sbjct: 61 REIFDRYGEEGL 72
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%)
Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRN 75
+ Y +L + KTA+ EI++ ++K+ALK HPDKNPNNP A F +INRA+ L D+ R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 76 IYDTYGSLGL 85
YD YG GL
Sbjct: 82 KYDKYGEKGL 91
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAE-KFKEINRAHSTLSDQTKRNI 76
Y +L + +A+PE+IKK YRK+AL++HPDKNP+N E AE KFK ++ A+ LSD KR++
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 77 YDTYG 81
YD G
Sbjct: 72 YDRAG 76
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSD 70
+SGD Y IL +P+ A+ +EIKK Y ++A KYHPD N ++P+A EKF ++ A+ LSD
Sbjct: 4 GSSGD-YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSD 62
Query: 71 QTKRNIYDTYGS 82
+ KR YD YGS
Sbjct: 63 EVKRKQYDAYGS 74
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL + KTA EI+K Y+++A+KYHPD+N + EA KFKEI A+ L+D KR Y
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 78 DTYG 81
D YG
Sbjct: 66 DQYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL + KTA EI+K Y+++A+KYHPD+N + EA KFKEI A+ L+D KR Y
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 78 DTYG 81
D YG
Sbjct: 66 DQYG 69
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL + KTA EI+K Y+++A+KYHPD+N + EA KFKEI A+ L+D KR Y
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 78 DTYG 81
D YG
Sbjct: 66 DQYG 69
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + AT EE+KK YRK+ALKYHPDKNPN EKFK+I++A+ LSD KR +Y
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKRELY 65
Query: 78 DTYG 81
D G
Sbjct: 66 DKGG 69
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%), Gaps = 3/64 (4%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + A+ E+KK YRKMALK+HPDKNP+ AE+FK+I++A+ LSD+ KR IY
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLSDEKKRQIY 67
Query: 78 DTYG 81
D G
Sbjct: 68 DQGG 71
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL +PK+A+ +IKK + K+A+KYHPDKN +P+A KF+EI A+ TLSD +R Y
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKN-KSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 78 DTYG 81
DT G
Sbjct: 69 DTLG 72
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSD 70
+SGD Y IL + + A+ E++KK YR++ALK+HPDKN + P A E FK I A++ LS+
Sbjct: 4 GSSGD-YYEILGVSRGASDEDLKKAYRRLALKFHPDKN-HAPGATEAFKAIGTAYAVLSN 61
Query: 71 QTKRNIYDTYGS 82
KR YD +GS
Sbjct: 62 PEKRKQYDQFGS 73
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI 76
LY +L + +A +E+KK YRK ALKYHPDK + EKFKEI+ A L+D KR I
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREI 66
Query: 77 YDTYG 81
YD YG
Sbjct: 67 YDQYG 71
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + +TA+ +IKK Y+K+A ++HPDKN +P A ++F +I++A+ LS++ KR Y
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKN-KDPGAEDRFIQISKAYEILSNEEKRTNY 78
Query: 78 DTYGS 82
D YGS
Sbjct: 79 DHYGS 83
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRN 75
+LY +L +P TAT +IK Y + YHPD+N + EAAE+F I++A+ L T R
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77
Query: 76 IYD 78
YD
Sbjct: 78 KYD 80
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + ++ E+I +++ AL+ HPDK+P NP+A E F+++ +A L+++ R Y
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARY 82
Query: 78 DTY 80
D +
Sbjct: 83 DHW 85
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y I+ + T + IK YR++A KYHPD + P+A +FKE+ A LSD+ +R Y
Sbjct: 8 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEPDAEARFKEVAEAWEVLSDEQRRAEY 66
Query: 78 D 78
D
Sbjct: 67 D 67
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL + T + IK YR++A KYHPD + N +A KFK++ A L D+ +R Y
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDEQRRAEY 89
Query: 78 D 78
D
Sbjct: 90 D 90
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNN------PEAAEKFKEINRAHSTLSDQ 71
Y IL +A ++K++Y+K+ L YHPDK + E +KF EI++A L ++
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72
Query: 72 TKRNIYD 78
+ YD
Sbjct: 73 ETKREYD 79
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP---EAAEKFKEINRAHSTLS 69
+G++ + + + TPE++KK YRK L HPDK P A F E+N A S
Sbjct: 47 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 106
Query: 70 DQTKRNIY 77
+Q ++ +Y
Sbjct: 107 NQGQKPLY 114
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 27 ATPEEIKKQYRKMALKYHPDKNPNNP---EAAEKFKEINRAHSTLSDQTKRNIY 77
TPE++KK YRK L HPDK P A F E+N A S +Q ++ +Y
Sbjct: 48 VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWSEFENQGQKPLY 101
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNN------PEAAEKFKEINRAHSTLSDQ 71
Y IL +A ++K++Y+K+ L YHPDK + E +KF EI++A L ++
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 72 TKRNIYD 78
+ YD
Sbjct: 79 ETKKKYD 85
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPN---NPEAAEKFKEINRAHSTLSDQTKR 74
Y IL + + A +EI K YRK+AL++HPD N +A +KF +I A LSD R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444
Query: 75 NIYD 78
+D
Sbjct: 445 KKFD 448
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 15 DSLYVILELPKTA-TPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLSD 70
++ Y +LE+ + +++ K YR +A K+HPD+ N E A E+F+ I A+ TL D
Sbjct: 15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD 74
Query: 71 QTKRNIYDTY 80
+ YD Y
Sbjct: 75 DEAKTNYDYY 84
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPN---NPEAAEKFKEINRAHSTLSDQTKR 74
Y IL + + A +EI K YRK+AL++HPD N +A +KF +I A LSD R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Query: 75 NIYD 78
+D
Sbjct: 445 KKFD 448
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP---EAAEKFKEINRAHSTLS 69
+G++ + + + TPE++KK YRK L HPDK P A F E+N A S
Sbjct: 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 174
Query: 70 DQTKR 74
+Q ++
Sbjct: 175 NQGQK 179
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP---EAAEKFKEINRAHSTLS 69
+G++ + + + TPE++KK YRK L HP K P A F E+N A S
Sbjct: 32 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFE 91
Query: 70 DQ 71
+Q
Sbjct: 92 NQ 93
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP---EAAEKFKEINRAHSTLS 69
+G++ + + + TPE++KK YRK L HP K P A F E+N A S
Sbjct: 31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFE 90
Query: 70 DQ 71
+Q
Sbjct: 91 NQ 92
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 8 RKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHST 67
R++ S DS + +L + A+ +E+ K YRK+A+ HPDK P + + FK + A +
Sbjct: 21 RRIRNSKDS-WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTA 78
Query: 68 L 68
L
Sbjct: 79 L 79
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 5/38 (13%)
Query: 31 EIKKQYRKMALKYHPDKNPNNPEAA-EKFK----EINR 63
E KK R++ LK+HPDKNP N + A E FK EINR
Sbjct: 32 ERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINR 69
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 26 TATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
T ++K+YR++ ++HPD + +E+ +N+A+ TL D +R+ Y
Sbjct: 29 TIDQSRLRKEYRQLQAQHHPDM---AQQGSEQSSTLNQAYHTLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 26 TATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
T ++K+YR++ ++HPD + +E+ +N+A+ TL D +R+ Y
Sbjct: 21 TIDQSRLRKEYRQLQAQHHPDM---AQQGSEQSSTLNQAYHTLKDPLRRSQY 69
>pdb|3F99|A Chain A, W354f Yersinia Enterocolitica Ptpase Apo Form
pdb|3F9A|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Tungstate
pdb|3F9B|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
Divanadate
Length = 306
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 50 NNPEAAEKFKEINRAHSTLSDQT---KRNIYDTYGS 82
N P+ E+ +A ++L DQT KRN+Y++ GS
Sbjct: 191 NFPDQTAVSSEVTKALASLVDQTAETKRNMYESKGS 226
>pdb|1PA9|A Chain A, Yersinia Protein-Tyrosine Phosphatase Complexed With Pncs
(Yop51,Pasteurella X,Ptpase,Yop51delta162) (Catalytic
Domain, Residues 163-468) Mutant With Cys 235 Replaced
By Arg (C235r)
Length = 284
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 50 NNPEAAEKFKEINRAHSTLSDQT---KRNIYDTYGS 82
N P+ E+ +A ++L DQT KRN+Y++ GS
Sbjct: 169 NWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGS 204
>pdb|1YTS|A Chain A, A Ligand-Induced Conformational Change In The Yersinia
Protein Tyrosine Phosphatase
Length = 278
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 50 NNPEAAEKFKEINRAHSTLSDQT---KRNIYDTYGS 82
N P+ E+ +A ++L DQT KRN+Y++ GS
Sbjct: 163 NWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGS 198
>pdb|1LYV|A Chain A, High-Resolution Structure Of The Catalytically Inactive
Yersinia Tyrosine Phosphatase C403a Mutant In Complex
With Phosphate
Length = 306
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 50 NNPEAAEKFKEINRAHSTLSDQT---KRNIYDTYGS 82
N P+ E+ +A ++L DQT KRN+Y++ GS
Sbjct: 191 NWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGS 226
>pdb|1QZ0|A Chain A, Crystal Structure Of The Yersinia Pestis Phosphatase Yoph
In Complex With A Phosphotyrosyl Mimetic-Containing
Hexapeptide
pdb|1QZ0|B Chain B, Crystal Structure Of The Yersinia Pestis Phosphatase Yoph
In Complex With A Phosphotyrosyl Mimetic-Containing
Hexapeptide
pdb|2I42|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
Complexed With Vanadate, A Transition State Analogue
pdb|1YTN|A Chain A, Hydrolase
pdb|1YTW|A Chain A, Yersinia Ptpase Complexed With Tungstate
pdb|2Y2F|A Chain A, Crystal Structure Of Yersinia Pestis Yoph In Complex With
An Aminooxy-Containing Platform Compound For Inhibitor
Design
pdb|2YDU|A Chain A, Crystal Structure Of Yoph In Complex With
3-(1,1-Dioxido-3-Oxoisothiazolidin-5-Yl)benzaldeyde
Length = 306
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 50 NNPEAAEKFKEINRAHSTLSDQT---KRNIYDTYGS 82
N P+ E+ +A ++L DQT KRN+Y++ GS
Sbjct: 191 NWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGS 226
>pdb|1XXV|A Chain A, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
pdb|1XXV|B Chain B, Yersinia Yoph (Residues 163-468) Binds
Phosphonodifluoromethyl-Phe Containing Hexapeptide At
Two Sites
Length = 306
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 50 NNPEAAEKFKEINRAHSTLSDQT---KRNIYDTYGS 82
N P+ E+ +A ++L DQT KRN+Y++ GS
Sbjct: 191 NWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGS 226
>pdb|1XXP|A Chain A, Yersinia Yoph (Residues 163-468) C403s Binds
Phosphotyrosyl Peptide At Two Sites
pdb|1XXP|B Chain B, Yersinia Yoph (Residues 163-468) C403s Binds
Phosphotyrosyl Peptide At Two Sites
Length = 306
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 50 NNPEAAEKFKEINRAHSTLSDQT---KRNIYDTYGS 82
N P+ E+ +A ++L DQT KRN+Y++ GS
Sbjct: 191 NWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGS 226
>pdb|1YPT|A Chain A, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
At 2.5 Angstroms And The Complex With Tungstate
pdb|1YPT|B Chain B, Crystal Structure Of Yersinia Protein Tyrosine Phosphatase
At 2.5 Angstroms And The Complex With Tungstate
pdb|3BLU|A Chain A, Crystal Structure Yoph Complexed With Inhibitor Pvs
pdb|3BLT|A Chain A, Crystal Structures Of Yoph Complexed With Pvsn And Pvs,
Inhibitors Of Yoph Which Co-Valent Bind To Cys Of Active
Site
Length = 305
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 50 NNPEAAEKFKEINRAHSTLSDQT---KRNIYDTYGS 82
N P+ E+ +A ++L DQT KRN+Y++ GS
Sbjct: 190 NWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGS 225
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
Length = 174
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 32 IKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTK 73
++K Y K ++HPDK + EK K++N + + D K
Sbjct: 30 MRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDGVK 67
>pdb|3SC6|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|D Chain D, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|E Chain E, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|F Chain F, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
Length = 287
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 86 YVAEQFGEENVNTYFMVTSTWC 107
Y EQF +E N YF+V ++W
Sbjct: 135 YAGEQFVKELHNKYFIVRTSWL 156
>pdb|3U96|A Chain A, Crystal Structure Of Yophq357f(Catalytic Domain, Residues
163-468) In Complex With Pncs
pdb|3U96|B Chain B, Crystal Structure Of Yophq357f(Catalytic Domain, Residues
163-468) In Complex With Pncs
Length = 306
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 50 NNPEAAEKFKEINRAHSTLSDQT---KRNIYDTYGS 82
N P+ E+ +A ++L DQT KRN+Y++ GS
Sbjct: 191 NWPDFTAVSSEVTKALASLVDQTAETKRNMYESKGS 226
>pdb|2GUZ|A Chain A, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|C Chain C, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|E Chain E, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|G Chain G, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|I Chain I, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|K Chain K, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|M Chain M, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|O Chain O, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
Length = 71
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKE 60
S ++L ++ T T +++K+ +RK+ L HPDK +P A K E
Sbjct: 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG-GSPFLATKINE 59
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 30 EEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAE 89
EE + RK + D +PN+ + +E+ + L+ K+N DT+ ++ +
Sbjct: 357 EEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELT--AKKNTIDTHXNIFAALLS 414
Query: 90 QFGEENVNTYFMV 102
Q ++++T+F V
Sbjct: 415 QLESKSLDTFFEV 427
>pdb|3BM8|A Chain A, Crystal Structure Of Yoph Mutant D356a Complexed With
Irreversible Inhibitor Pvsn
Length = 305
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 50 NNPEAAEKFKEINRAHSTLSDQT---KRNIYDTYGS 82
N P E+ +A ++L DQT KRN+Y++ GS
Sbjct: 190 NWPAQTAVSSEVTKALASLVDQTAETKRNMYESKGS 225
>pdb|1URD|A Chain A, X-Ray Structures Of The Maltose-Maltodextrin Binding
Protein Of The Thermoacidophilic Bacterium
Alicyclobacillus Acidocaldarius Provide Insight Into
Acid Stability Of Proteins
pdb|1URD|B Chain B, X-Ray Structures Of The Maltose-Maltodextrin Binding
Protein Of The Thermoacidophilic Bacterium
Alicyclobacillus Acidocaldarius Provide Insight Into
Acid Stability Of Proteins
Length = 370
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 1 MAAPPPRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKE 60
+ AP P ++T + I + T + + A+ Y+ P P+ +F +
Sbjct: 76 LMAPVPSGVLNTGLYAPNTIDAIKVNGTMYSVPVSVQVAAIYYNKKLVPQPPQTWAEFVK 135
Query: 61 INRAHSTLSDQTKRNIYDTYGSLGLYVAEQFGEEN 95
AH + DQ N+Y Y +G Y F + N
Sbjct: 136 DANAHGFMYDQA--NLYFDYAIIGGYGGYVFKDNN 168
>pdb|1URG|A Chain A, X-Ray Structures From The Maltose-Maltodextrin Binding
Protein Of The Thermoacidophilic Bacterium
Alicyclobacillus Acidocaldarius
pdb|1URS|A Chain A, X-Ray Structures Of The Maltose-Maltodextrin Binding
Protein Of The Thermoacidophilic Bacterium
Alicyclobacillus Acidocaldarius
pdb|1URS|B Chain B, X-Ray Structures Of The Maltose-Maltodextrin Binding
Protein Of The Thermoacidophilic Bacterium
Alicyclobacillus Acidocaldarius
Length = 402
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 1 MAAPPPRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKE 60
+ AP P ++T + I + T + + A+ Y+ P P+ +F +
Sbjct: 105 LMAPVPSGVLNTGLYAPNTIDAIKVNGTMYSVPVSVQVAAIYYNKKLVPQPPQTWAEFVK 164
Query: 61 INRAHSTLSDQTKRNIYDTYGSLGLYVAEQFGEEN 95
AH + DQ N+Y Y +G Y F + N
Sbjct: 165 DANAHGFMYDQA--NLYFDYAIIGGYGGYVFKDNN 197
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 32 IKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTK 73
++K Y K ++HPDK + EK K++N + + D K
Sbjct: 27 MRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDGVK 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,446,266
Number of Sequences: 62578
Number of extensions: 125881
Number of successful extensions: 425
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 54
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)