Query psy4517
Match_columns 109
No_of_seqs 170 out of 1097
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 19:11:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 2.5E-29 5.4E-34 187.6 8.4 74 13-86 2-75 (371)
2 KOG0713|consensus 99.9 1.5E-27 3.2E-32 174.9 7.9 76 12-87 13-88 (336)
3 PRK14288 chaperone protein Dna 99.9 3.1E-25 6.7E-30 167.0 7.5 72 14-85 2-73 (369)
4 KOG0716|consensus 99.9 3.2E-25 6.8E-30 158.6 6.1 95 14-108 30-124 (279)
5 KOG0712|consensus 99.9 1.3E-23 2.9E-28 155.2 6.8 71 13-86 2-72 (337)
6 PTZ00037 DnaJ_C chaperone prot 99.9 2.6E-23 5.7E-28 158.7 8.6 75 8-86 21-95 (421)
7 PRK14296 chaperone protein Dna 99.9 2E-23 4.4E-28 157.3 7.6 71 14-85 3-73 (372)
8 KOG0717|consensus 99.9 9.7E-24 2.1E-28 159.7 5.9 97 11-107 4-101 (508)
9 PRK14286 chaperone protein Dna 99.9 2.7E-23 5.7E-28 156.7 8.2 72 14-85 3-74 (372)
10 PRK14279 chaperone protein Dna 99.9 4.1E-23 8.8E-28 156.5 7.8 69 14-82 8-76 (392)
11 PRK14294 chaperone protein Dna 99.9 6.2E-23 1.3E-27 154.4 8.0 72 14-85 3-74 (366)
12 PRK14287 chaperone protein Dna 99.9 8.5E-23 1.8E-27 153.9 8.6 71 14-85 3-73 (371)
13 PRK14281 chaperone protein Dna 99.9 1E-22 2.3E-27 154.5 7.8 71 15-85 3-73 (397)
14 PRK14285 chaperone protein Dna 99.9 1.5E-22 3.2E-27 152.3 8.1 71 15-85 3-73 (365)
15 PRK14298 chaperone protein Dna 99.9 1.3E-22 2.9E-27 153.1 7.7 71 14-85 4-74 (377)
16 PRK14282 chaperone protein Dna 99.9 2.4E-22 5.3E-27 151.3 8.3 72 14-85 3-75 (369)
17 PRK14277 chaperone protein Dna 99.9 3E-22 6.5E-27 151.6 8.3 72 14-85 4-75 (386)
18 PRK14301 chaperone protein Dna 99.9 2.8E-22 6.1E-27 151.1 7.9 72 14-85 3-74 (373)
19 PRK14297 chaperone protein Dna 99.9 2.8E-22 6.2E-27 151.4 7.8 72 14-85 3-74 (380)
20 PRK14276 chaperone protein Dna 99.9 3.9E-22 8.4E-27 150.7 7.6 71 14-85 3-73 (380)
21 PRK14283 chaperone protein Dna 99.9 5.2E-22 1.1E-26 149.9 7.7 71 14-85 4-74 (378)
22 PRK14295 chaperone protein Dna 99.9 7.1E-22 1.5E-26 149.7 8.2 72 14-85 8-83 (389)
23 PRK14284 chaperone protein Dna 99.9 7.3E-22 1.6E-26 149.7 8.1 71 15-85 1-71 (391)
24 PRK10767 chaperone protein Dna 99.9 8.2E-22 1.8E-26 148.5 8.3 72 14-85 3-74 (371)
25 PRK14291 chaperone protein Dna 99.9 8.3E-22 1.8E-26 149.0 7.7 71 14-85 2-72 (382)
26 PRK14299 chaperone protein Dna 99.9 1.2E-21 2.7E-26 143.5 8.3 70 14-84 3-72 (291)
27 PRK14280 chaperone protein Dna 99.9 9.2E-22 2E-26 148.5 7.8 72 14-86 3-74 (376)
28 PF00226 DnaJ: DnaJ domain; I 99.9 1.5E-21 3.3E-26 113.4 6.7 63 16-78 1-64 (64)
29 PRK14278 chaperone protein Dna 99.9 1.2E-21 2.5E-26 148.0 7.4 68 15-83 3-70 (378)
30 KOG0691|consensus 99.8 2E-21 4.4E-26 142.0 7.5 75 14-88 4-78 (296)
31 PTZ00341 Ring-infected erythro 99.8 3.7E-21 8E-26 156.0 9.1 80 6-86 564-643 (1136)
32 TIGR02349 DnaJ_bact chaperone 99.8 2.2E-21 4.8E-26 145.3 7.3 70 16-86 1-70 (354)
33 PRK14289 chaperone protein Dna 99.8 4.9E-21 1.1E-25 144.9 8.3 72 14-85 4-75 (386)
34 PRK14290 chaperone protein Dna 99.8 5.3E-21 1.1E-25 143.9 7.8 71 15-85 3-74 (365)
35 KOG0718|consensus 99.8 4.3E-21 9.4E-26 145.7 6.9 75 12-86 6-83 (546)
36 PRK14300 chaperone protein Dna 99.8 8.6E-21 1.9E-25 143.1 7.0 70 15-85 3-72 (372)
37 KOG0715|consensus 99.8 1.6E-20 3.4E-25 137.5 7.3 70 14-84 42-111 (288)
38 PRK14292 chaperone protein Dna 99.8 2.6E-20 5.7E-25 140.3 7.8 69 15-84 2-70 (371)
39 PRK14293 chaperone protein Dna 99.8 2.9E-20 6.3E-25 140.3 7.3 70 15-85 3-72 (374)
40 PRK10266 curved DNA-binding pr 99.8 3.5E-20 7.7E-25 136.6 7.2 67 15-82 4-70 (306)
41 KOG0719|consensus 99.8 1.1E-19 2.4E-24 128.0 6.5 71 14-84 13-85 (264)
42 smart00271 DnaJ DnaJ molecular 99.8 2.7E-19 5.9E-24 102.4 7.0 58 15-72 1-59 (60)
43 cd06257 DnaJ DnaJ domain or J- 99.8 6.7E-19 1.5E-23 99.0 7.0 55 16-70 1-55 (55)
44 KOG0721|consensus 99.8 1E-18 2.2E-23 121.9 7.5 72 14-85 98-169 (230)
45 PHA03102 Small T antigen; Revi 99.8 6E-19 1.3E-23 118.4 4.9 69 14-86 4-74 (153)
46 TIGR03835 termin_org_DnaJ term 99.8 2.5E-18 5.4E-23 137.2 7.9 71 15-86 2-72 (871)
47 COG2214 CbpA DnaJ-class molecu 99.7 9.4E-18 2E-22 115.7 7.6 69 12-80 3-72 (237)
48 PRK05014 hscB co-chaperone Hsc 99.7 9.2E-17 2E-21 109.9 7.7 66 15-80 1-73 (171)
49 PRK03578 hscB co-chaperone Hsc 99.7 3.2E-16 6.9E-21 107.7 8.2 66 14-79 5-77 (176)
50 PRK01356 hscB co-chaperone Hsc 99.7 2.8E-16 6E-21 107.1 7.5 67 15-81 2-73 (166)
51 PRK00294 hscB co-chaperone Hsc 99.7 4E-16 8.7E-21 106.8 8.0 69 13-81 2-77 (173)
52 KOG0624|consensus 99.6 8.3E-16 1.8E-20 114.6 6.3 70 11-80 390-462 (504)
53 PHA02624 large T antigen; Prov 99.6 1.1E-15 2.4E-20 120.5 6.5 87 13-104 9-97 (647)
54 PTZ00100 DnaJ chaperone protei 99.6 3.8E-15 8.3E-20 95.7 6.0 53 13-69 63-115 (116)
55 KOG0720|consensus 99.6 3E-15 6.5E-20 113.8 6.1 68 14-82 234-301 (490)
56 KOG0722|consensus 99.6 1.3E-15 2.8E-20 108.9 3.9 71 12-83 30-100 (329)
57 KOG0550|consensus 99.5 1.2E-14 2.6E-19 109.8 5.1 69 13-81 371-440 (486)
58 PRK09430 djlA Dna-J like membr 99.5 2.6E-14 5.7E-19 103.8 6.2 59 12-70 197-262 (267)
59 KOG0714|consensus 99.5 2.8E-14 6.1E-19 102.4 4.9 73 14-86 2-75 (306)
60 PRK01773 hscB co-chaperone Hsc 99.5 1.9E-13 4.2E-18 93.6 7.5 65 15-79 2-73 (173)
61 COG5407 SEC63 Preprotein trans 99.4 2.3E-13 5E-18 103.9 5.4 72 14-85 97-173 (610)
62 COG5269 ZUO1 Ribosome-associat 99.4 5.5E-13 1.2E-17 96.4 4.4 92 15-108 43-139 (379)
63 TIGR00714 hscB Fe-S protein as 99.3 1.5E-11 3.2E-16 83.2 6.8 56 27-82 3-63 (157)
64 KOG1150|consensus 99.2 2.4E-11 5.1E-16 84.5 6.4 66 13-78 51-117 (250)
65 KOG0568|consensus 98.9 3.2E-09 7E-14 75.7 4.6 55 15-70 47-102 (342)
66 KOG1789|consensus 98.7 2.8E-08 6.1E-13 82.8 6.0 60 7-69 1273-1336(2235)
67 KOG0723|consensus 98.7 6.9E-08 1.5E-12 60.9 5.4 56 12-71 53-108 (112)
68 KOG3192|consensus 98.2 2.1E-06 4.5E-11 57.7 4.8 66 13-78 6-78 (168)
69 KOG0431|consensus 97.5 0.00014 3.1E-09 56.6 4.1 47 22-68 395-448 (453)
70 COG1076 DjlA DnaJ-domain-conta 97.4 0.00016 3.4E-09 49.6 2.8 67 16-82 2-75 (174)
71 PF03656 Pam16: Pam16; InterP 97.3 0.00096 2.1E-08 43.7 5.4 57 12-72 55-111 (127)
72 COG1076 DjlA DnaJ-domain-conta 97.2 0.00026 5.6E-09 48.5 2.8 54 15-68 113-173 (174)
73 KOG0724|consensus 93.2 0.1 2.2E-06 38.9 3.3 56 26-81 3-62 (335)
74 PF13446 RPT: A repeated domai 92.6 0.29 6.3E-06 27.6 4.0 28 14-41 4-31 (62)
75 PF11833 DUF3353: Protein of u 91.8 0.57 1.2E-05 32.8 5.3 40 24-71 1-40 (194)
76 PF14687 DUF4460: Domain of un 89.8 1.3 2.8E-05 28.3 5.2 48 25-72 4-55 (112)
77 KOG3442|consensus 87.4 1.4 3E-05 28.8 4.1 38 13-50 57-94 (132)
78 COG5552 Uncharacterized conser 79.3 11 0.00024 22.5 5.5 34 16-49 4-37 (88)
79 PF07709 SRR: Seven Residue Re 68.1 3.7 8E-05 16.3 1.0 13 57-69 2-14 (14)
80 cd01388 SOX-TCF_HMG-box SOX-TC 53.8 40 0.00086 19.1 4.3 41 34-79 14-54 (72)
81 PF10041 DUF2277: Uncharacteri 52.9 48 0.001 19.8 6.2 33 17-49 5-37 (78)
82 PF08447 PAS_3: PAS fold; Int 49.8 4.9 0.00011 23.1 -0.2 31 14-48 5-36 (91)
83 COG2879 Uncharacterized small 49.0 44 0.00095 19.3 3.6 29 34-64 26-54 (65)
84 cd00084 HMG-box High Mobility 42.5 55 0.0012 17.5 4.2 42 33-79 12-53 (66)
85 PF07739 TipAS: TipAS antibiot 42.0 80 0.0017 19.2 5.1 51 22-81 51-103 (118)
86 cd01390 HMGB-UBF_HMG-box HMGB- 40.1 63 0.0014 17.5 4.2 40 35-79 14-53 (66)
87 PF12434 Malate_DH: Malate deh 39.8 46 0.001 15.8 2.5 18 28-45 9-26 (28)
88 PF11207 DUF2989: Protein of u 39.8 90 0.002 22.1 4.8 57 20-80 2-58 (203)
89 cd01780 PLC_epsilon_RA Ubiquit 39.0 38 0.00082 21.0 2.5 36 13-48 9-44 (93)
90 cd01389 MATA_HMG-box MATA_HMG- 36.6 85 0.0018 17.9 4.3 41 33-78 13-53 (77)
91 PF14706 Tnp_DNA_bind: Transpo 35.8 50 0.0011 18.5 2.5 41 30-72 15-57 (58)
92 PF12725 DUF3810: Protein of u 35.1 1.2E+02 0.0026 22.8 5.2 56 15-70 82-148 (318)
93 PF03820 Mtc: Tricarboxylate c 35.1 46 0.001 25.0 3.0 50 25-74 46-121 (308)
94 KOG0527|consensus 34.8 63 0.0014 24.6 3.7 42 33-79 74-115 (331)
95 PF15178 TOM_sub5: Mitochondri 33.8 60 0.0013 17.6 2.5 23 18-40 2-24 (51)
96 PF04282 DUF438: Family of unk 32.5 26 0.00056 20.6 1.0 26 20-45 6-31 (71)
97 PF00505 HMG_box: HMG (high mo 31.0 88 0.0019 17.0 3.2 41 33-78 12-52 (69)
98 COG0089 RplW Ribosomal protein 30.5 47 0.001 20.6 2.0 21 20-40 25-45 (94)
99 KOG2320|consensus 30.5 92 0.002 25.8 4.1 38 22-68 396-433 (651)
100 KOG3960|consensus 30.2 43 0.00093 24.7 2.0 14 56-69 128-141 (284)
101 smart00427 H2B Histone H2B. 28.7 1.1E+02 0.0023 18.8 3.3 14 37-50 8-21 (89)
102 PF00076 RRM_1: RNA recognitio 28.0 47 0.001 17.7 1.6 23 20-42 3-25 (70)
103 PF04949 Transcrip_act: Transc 27.9 1E+02 0.0022 20.9 3.3 25 52-76 62-86 (159)
104 CHL00030 rpl23 ribosomal prote 27.6 57 0.0012 20.1 2.0 20 20-39 23-42 (93)
105 PF04967 HTH_10: HTH DNA bindi 27.1 24 0.00052 19.4 0.3 28 13-40 25-52 (53)
106 PRK10613 hypothetical protein; 26.6 26 0.00056 20.7 0.3 11 28-38 64-74 (74)
107 PF10769 DUF2594: Protein of u 26.6 26 0.00056 20.7 0.3 11 28-38 64-74 (74)
108 CHL00185 ycf59 magnesium-proto 25.9 1E+02 0.0022 23.6 3.4 55 14-69 249-305 (351)
109 TIGR03759 conj_TIGR03759 integ 24.9 1.5E+02 0.0033 21.0 3.9 35 7-43 29-63 (200)
110 KOG3767|consensus 24.8 92 0.002 23.7 3.0 28 22-49 61-88 (328)
111 TIGR03636 L23_arch archaeal ri 24.6 73 0.0016 18.9 2.0 20 20-39 18-37 (77)
112 PRK00810 nifW nitrogenase stab 24.5 1.3E+02 0.0029 19.3 3.3 66 13-79 17-90 (113)
113 PF06975 DUF1299: Protein of u 24.3 19 0.00041 19.0 -0.5 11 62-72 10-20 (47)
114 PF14606 Lipase_GDSL_3: GDSL-l 23.3 49 0.0011 22.9 1.3 51 20-70 64-133 (178)
115 cd01047 ACSF Aerobic Cyclase S 22.7 2E+02 0.0043 21.9 4.4 56 14-69 233-289 (323)
116 smart00143 PI3K_p85B PI3-kinas 21.5 1.1E+02 0.0024 18.2 2.4 24 20-43 3-26 (78)
117 PRK10141 DNA-binding transcrip 21.2 1E+02 0.0023 19.6 2.4 22 59-80 4-25 (117)
118 PRK13654 magnesium-protoporphy 21.0 1.5E+02 0.0033 22.8 3.5 55 14-68 253-308 (355)
119 TIGR02029 AcsF magnesium-proto 21.0 1.5E+02 0.0033 22.6 3.5 54 14-68 243-298 (337)
120 PLN00158 histone H2B; Provisio 21.0 1.9E+02 0.0041 18.7 3.5 15 36-50 33-47 (116)
121 smart00360 RRM RNA recognition 20.9 1.1E+02 0.0024 15.6 2.2 20 21-40 2-21 (71)
122 smart00362 RRM_2 RNA recogniti 20.5 1.1E+02 0.0024 15.7 2.2 21 20-40 4-24 (72)
123 cd07356 HN_L-whirlin_R1_like F 20.5 2.1E+02 0.0045 17.1 4.3 40 33-80 21-60 (78)
124 PRK05738 rplW 50S ribosomal pr 20.4 96 0.0021 18.9 2.0 20 20-39 24-43 (92)
125 PF08673 RsbU_N: Phosphoserine 20.2 2E+02 0.0044 16.9 3.3 24 24-47 32-55 (77)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-29 Score=187.58 Aligned_cols=74 Identities=54% Similarity=0.836 Sum_probs=71.1
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY 86 (109)
Q Consensus 13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 86 (109)
..+|||+||||+++||.+|||+|||+|+++||||+++.+++|.++|++|++||+||+||++|+.||+||+....
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 46899999999999999999999999999999999997899999999999999999999999999999998876
No 2
>KOG0713|consensus
Probab=99.94 E-value=1.5e-27 Score=174.93 Aligned_cols=76 Identities=59% Similarity=0.937 Sum_probs=72.5
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchh
Q psy4517 12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYV 87 (109)
Q Consensus 12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 87 (109)
...+|||+||||+++|+..|||+|||+||+++|||||++++.|.+.|+.|+.||+||+||.+|+.||.+|+.++..
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~ 88 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKD 88 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcc
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999888764
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=3.1e-25 Score=166.96 Aligned_cols=72 Identities=57% Similarity=0.856 Sum_probs=67.5
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|||+||||+++||.+|||+|||+|+++||||+++.++++.++|++|++||+||+||.+|..||++|..++
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~ 73 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL 73 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence 379999999999999999999999999999999997667889999999999999999999999999997654
No 4
>KOG0716|consensus
Probab=99.91 E-value=3.2e-25 Score=158.57 Aligned_cols=95 Identities=64% Similarity=1.006 Sum_probs=89.3
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchhhhhhcc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAEQFGE 93 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~~~~ 93 (109)
..++|+||||+++++.++||++||+|++++|||++++++++..+|++|++||+||+||.+|..||.+|..++...+.+++
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e~fg~ 109 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAEQFGE 109 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHHhhcc
Confidence 45799999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhcccccc
Q psy4517 94 ENVNTYFMVTSTWCK 108 (109)
Q Consensus 94 ~~~~~~~~~~~~~~~ 108 (109)
++...+|.+..+|.+
T Consensus 110 d~~~~~~v~~~~~~~ 124 (279)
T KOG0716|consen 110 DSKIIYFVFSSPWIK 124 (279)
T ss_pred cCcceEEEecchhhh
Confidence 998888887777653
No 5
>KOG0712|consensus
Probab=99.89 E-value=1.3e-23 Score=155.18 Aligned_cols=71 Identities=61% Similarity=0.924 Sum_probs=66.5
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY 86 (109)
Q Consensus 13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 86 (109)
.+..||+||||+++||.+|||+|||+|+++|||||+++ +.++|++|.+||+||+||++|.+||++|..++.
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~ 72 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQ 72 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence 35789999999999999999999999999999999975 789999999999999999999999999988774
No 6
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.89 E-value=2.6e-23 Score=158.65 Aligned_cols=75 Identities=55% Similarity=0.827 Sum_probs=66.8
Q ss_pred CCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517 8 RKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY 86 (109)
Q Consensus 8 ~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 86 (109)
+.-.....|||+||||+++||.+|||+|||+|+++||||++++ .++|++|++||++|+||.+|..||.+|..++.
T Consensus 21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~ 95 (421)
T PTZ00037 21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLE 95 (421)
T ss_pred ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcc
Confidence 4444457899999999999999999999999999999999853 48999999999999999999999999876543
No 7
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2e-23 Score=157.31 Aligned_cols=71 Identities=42% Similarity=0.737 Sum_probs=66.2
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|||+||||+++|+.+|||+|||+|+++||||+++ .+.+.++|++|++||+||+||.+|..||.+|..++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~ 73 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence 479999999999999999999999999999999996 47789999999999999999999999999987543
No 8
>KOG0717|consensus
Probab=99.89 E-value=9.7e-24 Score=159.67 Aligned_cols=97 Identities=34% Similarity=0.523 Sum_probs=82.3
Q ss_pred CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchhhh
Q psy4517 11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAE 89 (109)
Q Consensus 11 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~ 89 (109)
+...+.||+||||.++++..+||++||+|+++||||+++.. .+++++|+.|+.||+|||||..|.+||.+....+....
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~~ 83 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGKN 83 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCCC
Confidence 34567899999999999999999999999999999997654 68999999999999999999999999998876555444
Q ss_pred hhccccchhhhhhccccc
Q psy4517 90 QFGEENVNTYFMVTSTWC 107 (109)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~ 107 (109)
.-......+.|.+|.+.|
T Consensus 84 s~~~~~~~dlf~ff~~~~ 101 (508)
T KOG0717|consen 84 SDTGVQIEDLFQFFTSSC 101 (508)
T ss_pred CccccchHHHHHHhhhhh
Confidence 444456677777777665
No 9
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2.7e-23 Score=156.66 Aligned_cols=72 Identities=51% Similarity=0.798 Sum_probs=67.7
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|||+||||+++||.+|||+|||+|+++||||++++++++.++|++|++||+||+||.+|..||++|..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV 74 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence 479999999999999999999999999999999997667899999999999999999999999999987654
No 10
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=4.1e-23 Score=156.54 Aligned_cols=69 Identities=45% Similarity=0.729 Sum_probs=65.9
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGS 82 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 82 (109)
.+|||+||||+++|+.+|||+|||+|+++||||++++++.+.++|++|++||+||+||.+|+.||++|.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 479999999999999999999999999999999998777899999999999999999999999999975
No 11
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=6.2e-23 Score=154.37 Aligned_cols=72 Identities=54% Similarity=0.859 Sum_probs=67.8
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|||+||||+++|+.+|||+|||+|+++||||++++.+++.++|++|++||+||+||.+|..||++|..++
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~ 74 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL 74 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence 479999999999999999999999999999999998767889999999999999999999999999997654
No 12
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=8.5e-23 Score=153.87 Aligned_cols=71 Identities=44% Similarity=0.737 Sum_probs=66.3
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|||+||||+++||.+|||+|||+|+++||||+++. +++.++|++|++||++|+||.+|+.||++|..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~ 73 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDP 73 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccc
Confidence 4699999999999999999999999999999999874 7788999999999999999999999999997654
No 13
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1e-22 Score=154.52 Aligned_cols=71 Identities=52% Similarity=0.888 Sum_probs=67.0
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
.|||+||||+++|+.++||+|||+|+++||||++++...+.++|++|++||++|+|+.+|..||.+|..++
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~ 73 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence 69999999999999999999999999999999998767888999999999999999999999999987654
No 14
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.5e-22 Score=152.33 Aligned_cols=71 Identities=49% Similarity=0.750 Sum_probs=67.2
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
.|||+||||+++||.+|||+|||+|+++||||++++.+++.++|++|++||++|+|+.+|..||.+|..++
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~ 73 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF 73 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence 69999999999999999999999999999999998778889999999999999999999999999987654
No 15
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.3e-22 Score=153.06 Aligned_cols=71 Identities=55% Similarity=0.877 Sum_probs=66.2
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|||+||||+++|+.+|||+|||+|+++||||+++. ..+.++|++|++||++|+||.+|..||++|..++
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI 74 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence 4799999999999999999999999999999999964 7788999999999999999999999999987654
No 16
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.4e-22 Score=151.28 Aligned_cols=72 Identities=44% Similarity=0.796 Sum_probs=66.4
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|||+||||+++||.+|||+|||+|+++||||+++.. ..+.++|++|++||++|+||.+|..||.+|..+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 47999999999999999999999999999999998753 5688999999999999999999999999987654
No 17
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=3e-22 Score=151.57 Aligned_cols=72 Identities=51% Similarity=0.798 Sum_probs=67.5
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|||+||||+++||.++||+|||+|+++||||++++.+.+.++|++|++||++|+|+.+|..||.+|..++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 75 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF 75 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence 369999999999999999999999999999999998767889999999999999999999999999987654
No 18
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.8e-22 Score=151.14 Aligned_cols=72 Identities=49% Similarity=0.857 Sum_probs=67.7
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|||+||||+++||.++||+|||+|+++||||++++++++.++|++|++||+||+||.+|..||.+|..++
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~ 74 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV 74 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence 479999999999999999999999999999999998777889999999999999999999999999987654
No 19
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.8e-22 Score=151.41 Aligned_cols=72 Identities=51% Similarity=0.812 Sum_probs=67.7
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|||+||||+++|+.++||+|||+|+++||||+++..+++.++|++|++||++|+||.+|..||++|..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 369999999999999999999999999999999998767899999999999999999999999999987654
No 20
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=3.9e-22 Score=150.71 Aligned_cols=71 Identities=49% Similarity=0.776 Sum_probs=66.4
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|||+||||+++||.+|||+|||+|+++||||++++ +.+.++|++|++||++|+||.+|..||++|..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~ 73 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA 73 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence 4799999999999999999999999999999999974 6788999999999999999999999999997654
No 21
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=5.2e-22 Score=149.91 Aligned_cols=71 Identities=46% Similarity=0.744 Sum_probs=66.5
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|||+||||+++||.+|||+|||+|+++||||++++ +.+.++|++|++||++|+|+.+|..||.+|..++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 5799999999999999999999999999999999974 7789999999999999999999999999987654
No 22
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=7.1e-22 Score=149.65 Aligned_cols=72 Identities=49% Similarity=0.799 Sum_probs=66.8
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhh----hCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDT----YGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~----~~~~~~ 85 (109)
..|||+||||+++||.+|||+|||+|+++||||+++..+.+.++|++|++||+||+||.+|..||+ +|..++
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 369999999999999999999999999999999997667889999999999999999999999998 876544
No 23
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=7.3e-22 Score=149.69 Aligned_cols=71 Identities=56% Similarity=0.901 Sum_probs=66.7
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
.|||+||||+++||.++||+|||+|+++||||++++.+.+.++|++|++||++|+|+.+|..||++|..++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 38999999999999999999999999999999998778899999999999999999999999999987543
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=8.2e-22 Score=148.47 Aligned_cols=72 Identities=50% Similarity=0.849 Sum_probs=67.5
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|||+||||+++||.++||+|||+|+++||||++++.+.+.++|++|++||++|+|+.+|..||.+|..++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 74 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF 74 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence 479999999999999999999999999999999997667889999999999999999999999999987654
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=8.3e-22 Score=148.98 Aligned_cols=71 Identities=55% Similarity=0.854 Sum_probs=66.3
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|||+||||+++|+.++||+|||+|+++||||++++ +.+.++|++|++||++|+||.+|..||.+|..++
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 4799999999999999999999999999999999974 7788999999999999999999999999987654
No 26
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=1.2e-21 Score=143.49 Aligned_cols=70 Identities=56% Similarity=0.874 Sum_probs=65.6
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCC
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLG 84 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 84 (109)
..|||+||||+++||.++||+|||+|++++|||+++ .+.+.++|++|++||++|+|+.+|..||.+|..+
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 479999999999999999999999999999999996 4778999999999999999999999999998753
No 27
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=9.2e-22 Score=148.48 Aligned_cols=72 Identities=47% Similarity=0.727 Sum_probs=66.6
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY 86 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 86 (109)
..|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|..||.+|..++.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 74 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPN 74 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccc
Confidence 3699999999999999999999999999999999874 67889999999999999999999999999876543
No 28
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.86 E-value=1.5e-21 Score=113.36 Aligned_cols=63 Identities=52% Similarity=0.812 Sum_probs=59.4
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP-EAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 16 ~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
|||+||||+++++.++|+++|+++++.+|||+..+.. .+.+.|..|++||++|++|.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999999999999999999999999987654 58899999999999999999999998
No 29
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.2e-21 Score=148.03 Aligned_cols=68 Identities=47% Similarity=0.676 Sum_probs=64.7
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCC
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSL 83 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 83 (109)
.|||+||||+++|+.++||+|||+|+++||||+++ .+++.++|++|++||+||+||.+|..||.+|..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 68999999999999999999999999999999997 477899999999999999999999999999864
No 30
>KOG0691|consensus
Probab=99.85 E-value=2e-21 Score=142.02 Aligned_cols=75 Identities=47% Similarity=0.734 Sum_probs=71.0
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchhh
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVA 88 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 88 (109)
..|||+||||+.+++..+|+++|+..++++||||++++|.+.++|+.+.+||+||+|+..|..||.++..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~ 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence 579999999999999999999999999999999999999999999999999999999999999999987776544
No 31
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.85 E-value=3.7e-21 Score=156.02 Aligned_cols=80 Identities=31% Similarity=0.482 Sum_probs=71.2
Q ss_pred CCCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 6 PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 6 ~~~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
+.|.......+||+||||+++||..+||+|||+|++++|||++++ ..+.++|+.|++||++|+||.+|..||.+|..+.
T Consensus 564 ~~~t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~-~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl 642 (1136)
T PTZ00341 564 AAPTIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSG-NEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI 642 (1136)
T ss_pred ccccccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence 344444456899999999999999999999999999999999986 4688899999999999999999999999998765
Q ss_pred h
Q psy4517 86 Y 86 (109)
Q Consensus 86 ~ 86 (109)
.
T Consensus 643 ~ 643 (1136)
T PTZ00341 643 K 643 (1136)
T ss_pred C
Confidence 4
No 32
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.85 E-value=2.2e-21 Score=145.32 Aligned_cols=70 Identities=56% Similarity=0.842 Sum_probs=65.2
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY 86 (109)
Q Consensus 16 ~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 86 (109)
|||+||||+++|+.++||+||++++++||||+++ .+.+.++|++|++||++|+|+.+|..||.+|..+..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 70 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN 70 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhccccccc
Confidence 6999999999999999999999999999999996 467889999999999999999999999999876543
No 33
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.9e-21 Score=144.94 Aligned_cols=72 Identities=53% Similarity=0.821 Sum_probs=67.7
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|||+||||+++|+.+|||+|||+|+++||||++++.+++.++|++|++||++|+||.+|..||.+|..++
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~ 75 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV 75 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 479999999999999999999999999999999998778899999999999999999999999999987653
No 34
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.3e-21 Score=143.89 Aligned_cols=71 Identities=46% Similarity=0.754 Sum_probs=66.1
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP-EAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
.|||+||||+++|+.+|||+|||+|++++|||+++... ++.++|++|++||++|+|+.+|..||.+|..++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~ 74 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF 74 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence 69999999999999999999999999999999987543 788999999999999999999999999987654
No 35
>KOG0718|consensus
Probab=99.84 E-value=4.3e-21 Score=145.68 Aligned_cols=75 Identities=51% Similarity=0.795 Sum_probs=69.0
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517 12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN---PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY 86 (109)
Q Consensus 12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 86 (109)
.++.+||.+|||+++||.+||++|||++++.|||||..+. ..|++.|+.|.+||+||+||.+|.+||.+|..|+.
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 4567999999999999999999999999999999998754 35788999999999999999999999999999886
No 36
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=8.6e-21 Score=143.05 Aligned_cols=70 Identities=43% Similarity=0.703 Sum_probs=65.3
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
.|||+||||+++||.+|||+|||+++++||||+++ ...+.++|++|++||++|+|+.+|..||.+|..++
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 69999999999999999999999999999999986 46688899999999999999999999999987654
No 37
>KOG0715|consensus
Probab=99.83 E-value=1.6e-20 Score=137.49 Aligned_cols=70 Identities=47% Similarity=0.722 Sum_probs=65.7
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCC
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLG 84 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 84 (109)
..|||+||||+++|+..|||.||++|+++||||.+.. .++.++|++|.+||+||+|+.+|..||..+..+
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 3499999999999999999999999999999999975 599999999999999999999999999987764
No 38
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.6e-20 Score=140.33 Aligned_cols=69 Identities=49% Similarity=0.783 Sum_probs=65.0
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCC
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLG 84 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 84 (109)
.|||+||||+++|+.++||+||++|++++|||+++ ...+.++|++|++||++|+||.+|..||.+|..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 58999999999999999999999999999999997 4778899999999999999999999999998754
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.9e-20 Score=140.28 Aligned_cols=70 Identities=46% Similarity=0.811 Sum_probs=65.3
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
.|||+||||+++++.++||+|||+|++++|||+++. ..+.++|++|++||++|+||.+|..||.+|..++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~ 72 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence 699999999999999999999999999999999864 6788999999999999999999999999987644
No 40
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.81 E-value=3.5e-20 Score=136.59 Aligned_cols=67 Identities=37% Similarity=0.650 Sum_probs=63.3
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGS 82 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 82 (109)
.|||+||||++++|.++||+|||+|++++|||++.. +.+.++|++|++||++|+|+.+|..||.++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 699999999999999999999999999999999863 6789999999999999999999999999874
No 41
>KOG0719|consensus
Probab=99.80 E-value=1.1e-19 Score=127.99 Aligned_cols=71 Identities=45% Similarity=0.767 Sum_probs=65.6
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCC
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKN--PNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLG 84 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~--~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 84 (109)
..|+|+||||.++|+..+|++||+++++++|||++ ....+++++|+.++.||+||+|..+|..||.-|...
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 34999999999999999999999999999999999 334578999999999999999999999999988776
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.80 E-value=2.7e-19 Score=102.35 Aligned_cols=58 Identities=60% Similarity=0.914 Sum_probs=54.1
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHHhcCch
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPN-NPEAAEKFKEINRAHSTLSDQT 72 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~-~~~~~~~f~~i~~Ay~~L~d~~ 72 (109)
.+||+||||+++++.++||++|+++++.+|||++++ .+.+.+.|.+|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 479999999999999999999999999999999975 4778899999999999999985
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.78 E-value=6.7e-19 Score=99.01 Aligned_cols=55 Identities=67% Similarity=1.023 Sum_probs=51.7
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q psy4517 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSD 70 (109)
Q Consensus 16 ~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d 70 (109)
|||+||||+++++.++||++|+++++++|||+.++...+.+.|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999997556788999999999999986
No 44
>KOG0721|consensus
Probab=99.77 E-value=1e-18 Score=121.90 Aligned_cols=72 Identities=38% Similarity=0.616 Sum_probs=66.1
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
.-|+||||||++++|..|||+|||+|++++||||.+...+..+.|..|.+||+.|+|+..|..|..+|.-..
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 468999999999999999999999999999999987656677889999999999999999999999987654
No 45
>PHA03102 Small T antigen; Reviewed
Probab=99.76 E-value=6e-19 Score=118.40 Aligned_cols=69 Identities=26% Similarity=0.345 Sum_probs=62.9
Q ss_pred ccCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517 14 GDSLYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY 86 (109)
Q Consensus 14 ~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 86 (109)
.+.+|+||||+++| |..+||+|||++++++|||++++ .++|++|++||++|+++..|..||.+|.....
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~ 74 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDSSS 74 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence 35789999999999 99999999999999999999864 47999999999999999999999999876644
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.75 E-value=2.5e-18 Score=137.20 Aligned_cols=71 Identities=46% Similarity=0.764 Sum_probs=66.3
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY 86 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 86 (109)
.|||+||||+++|+..+||++||+|++++|||++++ +.+.++|++|++||++|+||.+|..||.+|..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 689999999999999999999999999999999875 77888999999999999999999999999876654
No 47
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=9.4e-18 Score=115.66 Aligned_cols=69 Identities=55% Similarity=0.836 Sum_probs=64.6
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHHHHhcCchhHHHhhhh
Q psy4517 12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPE-AAEKFKEINRAHSTLSDQTKRNIYDTY 80 (109)
Q Consensus 12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 80 (109)
....+||+||||+++++..+|+++|+++++++|||+++..+. +.+.|..|++||++|+|+..|..||..
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 345789999999999999999999999999999999987775 899999999999999999999999986
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.69 E-value=9.2e-17 Score=109.89 Aligned_cols=66 Identities=27% Similarity=0.432 Sum_probs=57.9
Q ss_pred cCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCHH-----HHHHHHHHHHHHHHhcCchhHHHhhhh
Q psy4517 15 DSLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNPE-----AAEKFKEINRAHSTLSDQTKRNIYDTY 80 (109)
Q Consensus 15 ~~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 80 (109)
.|||+||||++. ++..+|+++|+++++++|||+..+.+. +.+.+..|++||++|+||.+|..|+..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 489999999995 688999999999999999999765432 567899999999999999999999853
No 49
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.67 E-value=3.2e-16 Score=107.66 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=57.7
Q ss_pred ccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCHHH-----HHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517 14 GDSLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNPEA-----AEKFKEINRAHSTLSDQTKRNIYDT 79 (109)
Q Consensus 14 ~~~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~~~-----~~~f~~i~~Ay~~L~d~~~R~~Yd~ 79 (109)
..|||+||||++. ++..+|+++|+++++++|||+..+.+.. .+.+..|++||++|+||.+|..|..
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 3799999999995 6899999999999999999998654433 3456899999999999999999985
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.66 E-value=2.8e-16 Score=107.06 Aligned_cols=67 Identities=36% Similarity=0.451 Sum_probs=57.9
Q ss_pred cCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCHH---HHHHHHHHHHHHHHhcCchhHHHhhhhC
Q psy4517 15 DSLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLSDQTKRNIYDTYG 81 (109)
Q Consensus 15 ~~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 81 (109)
.|||+||||++. ++..+|+++|+++++++|||+..+..+ +.+.+..|++||+||+||.+|..|....
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 589999999996 789999999999999999999864322 3356889999999999999999998544
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.66 E-value=4e-16 Score=106.85 Aligned_cols=69 Identities=25% Similarity=0.420 Sum_probs=60.3
Q ss_pred CccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCHH-----HHHHHHHHHHHHHHhcCchhHHHhhhhC
Q psy4517 13 SGDSLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNPE-----AAEKFKEINRAHSTLSDQTKRNIYDTYG 81 (109)
Q Consensus 13 ~~~~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 81 (109)
...+||++|||++. .+..+|+++|+++++++|||+..+.+. +.+.+..|++||+||+||.+|..|+...
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l 77 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL 77 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 45799999999996 678999999999999999999865433 5677999999999999999999999543
No 52
>KOG0624|consensus
Probab=99.62 E-value=8.3e-16 Score=114.56 Aligned_cols=70 Identities=37% Similarity=0.594 Sum_probs=63.4
Q ss_pred CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH---HHHHHHHHHHHHHHHhcCchhHHHhhhh
Q psy4517 11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP---EAAEKFKEINRAHSTLSDQTKRNIYDTY 80 (109)
Q Consensus 11 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~---~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 80 (109)
.+..+|||.||||.++|+..||.+|||+++.+||||-..+.+ .+..+|.-|..|-+||+||++|+.+|..
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 356789999999999999999999999999999999987543 3678899999999999999999999973
No 53
>PHA02624 large T antigen; Provisional
Probab=99.61 E-value=1.1e-15 Score=120.47 Aligned_cols=87 Identities=23% Similarity=0.380 Sum_probs=69.3
Q ss_pred CccCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchhhhh
Q psy4517 13 SGDSLYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAEQ 90 (109)
Q Consensus 13 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~ 90 (109)
+..++|+||||+++| +..+||+|||++++++|||++++ .++|++|++||++|+|+.+|..|. ++.........
T Consensus 9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~~-fd~~~~~~v~~ 83 (647)
T PHA02624 9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQS-FGTQDSSEIPT 83 (647)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhcc-cccccccCCCC
Confidence 456899999999999 99999999999999999999754 578999999999999999999993 22221111234
Q ss_pred hccccchhhhhhcc
Q psy4517 91 FGEENVNTYFMVTS 104 (109)
Q Consensus 91 ~~~~~~~~~~~~~~ 104 (109)
++...|..||..++
T Consensus 84 ~~~~~w~~ww~~f~ 97 (647)
T PHA02624 84 YGTPEWEQWWEEFN 97 (647)
T ss_pred CccccHHHHHHHhh
Confidence 46667777776655
No 54
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.58 E-value=3.8e-15 Score=95.67 Aligned_cols=53 Identities=28% Similarity=0.442 Sum_probs=48.1
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhc
Q psy4517 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLS 69 (109)
Q Consensus 13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~ 69 (109)
+..++|+||||++++|.++|+++||++++++|||++++ .+.+.+|++||++|.
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence 45799999999999999999999999999999999753 467889999999985
No 55
>KOG0720|consensus
Probab=99.58 E-value=3e-15 Score=113.83 Aligned_cols=68 Identities=38% Similarity=0.536 Sum_probs=64.5
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGS 82 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 82 (109)
..|.|.+|||+.+++.++||+.||+++...||||+- .+.|.|.|+.++.||++|+|+++|..||....
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ 301 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELK 301 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 689999999999999999999999999999999997 69999999999999999999999999997543
No 56
>KOG0722|consensus
Probab=99.58 E-value=1.3e-15 Score=108.93 Aligned_cols=71 Identities=32% Similarity=0.521 Sum_probs=64.4
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCC
Q psy4517 12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSL 83 (109)
Q Consensus 12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 83 (109)
...+|+|+||||++.++..+|.+|||+|++++|||++.+ +++.+.|..|..||++|.|...|..||-..+.
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyaldh 100 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYALDH 100 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHhcC
Confidence 456899999999999999999999999999999999986 66679999999999999999999999965443
No 57
>KOG0550|consensus
Probab=99.52 E-value=1.2e-14 Score=109.84 Aligned_cols=69 Identities=45% Similarity=0.647 Sum_probs=64.5
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhhhhC
Q psy4517 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYDTYG 81 (109)
Q Consensus 13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 81 (109)
...+||.||||...++..+|+++||++++.+|||++.++ .+++.+|++|-+||.+|+||.+|..||+.-
T Consensus 371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 457999999999999999999999999999999999877 788899999999999999999999999743
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.51 E-value=2.6e-14 Score=103.79 Aligned_cols=59 Identities=31% Similarity=0.442 Sum_probs=52.3
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-------HHHHHHHHHHHHHHHHhcC
Q psy4517 12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-------PEAAEKFKEINRAHSTLSD 70 (109)
Q Consensus 12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-------~~~~~~f~~i~~Ay~~L~d 70 (109)
.+..++|+||||++++|.++||++||++++++|||+..+. +.+.++|++|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 4558999999999999999999999999999999996421 3578999999999999975
No 59
>KOG0714|consensus
Probab=99.49 E-value=2.8e-14 Score=102.39 Aligned_cols=73 Identities=56% Similarity=0.889 Sum_probs=64.2
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY 86 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 86 (109)
..++|.||||.+.++.++|++||+.+++.+|||+++.. ..+..+|++|.+||++|+|+.+|..||.++..+..
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~ 75 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLK 75 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccc
Confidence 46899999999999999999999999999999997754 24555899999999999999999999999974443
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.47 E-value=1.9e-13 Score=93.65 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=57.4
Q ss_pred cCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCH-----HHHHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517 15 DSLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNP-----EAAEKFKEINRAHSTLSDQTKRNIYDT 79 (109)
Q Consensus 15 ~~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 79 (109)
.|||++|||++. .+...++++|+++++.+|||+..+.. .+.+....||+||.||+||.+|..|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 589999999995 89999999999999999999986553 245668999999999999999999964
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.42 E-value=2.3e-13 Score=103.87 Aligned_cols=72 Identities=38% Similarity=0.669 Sum_probs=64.5
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----CHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPN-----NPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~-----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
.-|+||||||+.+++..+||++||+|+.++||||.+. .++.++.+.+|++||..|+|...|..|-.+|.-..
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~ 173 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS 173 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence 3589999999999999999999999999999999764 24677889999999999999999999998876543
No 62
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=5.5e-13 Score=96.43 Aligned_cols=92 Identities=32% Similarity=0.387 Sum_probs=73.2
Q ss_pred cCcchhcCCCC---CCCHHHHHHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchhhh
Q psy4517 15 DSLYVILELPK---TATPEEIKKQYRKMALKYHPDKN--PNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAE 89 (109)
Q Consensus 15 ~~~y~iLgv~~---~as~~eIk~ayr~l~~~~hPDk~--~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~ 89 (109)
.|+|.+|||+. -+++.+|.++.++.+.+||||+. +++-.+.+.|..|+.||+||+|+..|..||+..-.....++
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~advppp 122 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADVPPP 122 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccCCCCc
Confidence 68999999997 68899999999999999999996 23456788999999999999999999999975433322222
Q ss_pred hhccccchhhhhhcccccc
Q psy4517 90 QFGEENVNTYFMVTSTWCK 108 (109)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~ 108 (109)
. ....+.||-.+.|+|.
T Consensus 123 ~--~~t~~~Ffe~w~pvFe 139 (379)
T COG5269 123 R--IYTPDEFFEVWEPVFE 139 (379)
T ss_pred c--CCCchhHHHHHHHHHH
Confidence 2 2235788888888875
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.27 E-value=1.5e-11 Score=83.17 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCH-----HHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517 27 ATPEEIKKQYRKMALKYHPDKNPNNP-----EAAEKFKEINRAHSTLSDQTKRNIYDTYGS 82 (109)
Q Consensus 27 as~~eIk~ayr~l~~~~hPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 82 (109)
.+..+|+++|+++++++|||+..+.. .+.+.+..|++||++|+||.+|..|.....
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 47889999999999999999965432 256789999999999999999999996543
No 64
>KOG1150|consensus
Probab=99.24 E-value=2.4e-11 Score=84.50 Aligned_cols=66 Identities=30% Similarity=0.503 Sum_probs=59.8
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
-+-|+|+||.|.+..+.++||+.||+|+...|||+++++ +.|...|-.|.+||..|.|+..|..-+
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 567999999999999999999999999999999999987 678888999999999999998665443
No 65
>KOG0568|consensus
Probab=98.86 E-value=3.2e-09 Score=75.66 Aligned_cols=55 Identities=24% Similarity=0.483 Sum_probs=49.8
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH-HhcC
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS-TLSD 70 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~-~L~d 70 (109)
..||.||||..+++.++++.+|..|++++|||.+. .+...+.|.+|.+||. +|+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs-~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGS-EEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCC-ccccHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999985 4667789999999998 7764
No 66
>KOG1789|consensus
Probab=98.71 E-value=2.8e-08 Score=82.80 Aligned_cols=60 Identities=42% Similarity=0.642 Sum_probs=51.6
Q ss_pred CCCCCCCccCcchhcCCCC----CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhc
Q psy4517 7 RRKMSTSGDSLYVILELPK----TATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLS 69 (109)
Q Consensus 7 ~~~~~~~~~~~y~iLgv~~----~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~ 69 (109)
..++..+..+.|+||.|+- ...++.||++|++|+.+|||||+ ++..+.|..+++||+.|+
T Consensus 1273 kKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN---PEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1273 KKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN---PEGREMFERVNKAYELLS 1336 (2235)
T ss_pred cCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHHHH
Confidence 3456677888999999985 33558899999999999999998 567899999999999997
No 67
>KOG0723|consensus
Probab=98.66 E-value=6.9e-08 Score=60.89 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=47.4
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q psy4517 12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQ 71 (109)
Q Consensus 12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 71 (109)
.+.+..-.||||+++++.+.||+++|++....|||++++ .-.-..|+||+++|...
T Consensus 53 Msr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS----PYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 53 MSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS----PYLASKINEAKDLLEGT 108 (112)
T ss_pred cchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC----HHHHHHHHHHHHHHhcc
Confidence 345667789999999999999999999999999999986 23445699999999754
No 68
>KOG3192|consensus
Probab=98.24 E-value=2.1e-06 Score=57.74 Aligned_cols=66 Identities=29% Similarity=0.478 Sum_probs=55.0
Q ss_pred CccCcchhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCC-----HHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 13 SGDSLYVILELPK--TATPEEIKKQYRKMALKYHPDKNPNN-----PEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 13 ~~~~~y~iLgv~~--~as~~eIk~ayr~l~~~~hPDk~~~~-----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
+..+||.++|... -..++.++.-|....+++|||+.+.. ..+.+...++++||.+|.||-+|+.|=
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4568999998765 45777788899999999999995432 357788999999999999999999995
No 69
>KOG0431|consensus
Probab=97.48 E-value=0.00014 Score=56.65 Aligned_cols=47 Identities=34% Similarity=0.522 Sum_probs=35.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH-------HHHHHHHHHHHHHHHh
Q psy4517 22 ELPKTATPEEIKKQYRKMALKYHPDKNPNNP-------EAAEKFKEINRAHSTL 68 (109)
Q Consensus 22 gv~~~as~~eIk~ayr~l~~~~hPDk~~~~~-------~~~~~f~~i~~Ay~~L 68 (109)
++..-++..+||++||+.++.+||||.+... .+++.|-.+++||...
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 4555689999999999999999999976542 2455566666666543
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00016 Score=49.61 Aligned_cols=67 Identities=31% Similarity=0.447 Sum_probs=52.4
Q ss_pred CcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCHH-----HHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517 16 SLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNPE-----AAEKFKEINRAHSTLSDQTKRNIYDTYGS 82 (109)
Q Consensus 16 ~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 82 (109)
+++.++|..+. ...+.++..|+.+.+.+|||+...... +.+.+..++.||.+|.+|..|..|=....
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 35556666653 355669999999999999999875533 44679999999999999999999975433
No 71
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=97.25 E-value=0.00096 Score=43.69 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=39.8
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy4517 12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQT 72 (109)
Q Consensus 12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~ 72 (109)
.+......||||++..+.++|.+.|.+|-...+|+++++ .-.-..|..|.+.|....
T Consensus 55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHH
Confidence 444567899999999999999999999999999999875 344556777887776443
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00026 Score=48.52 Aligned_cols=54 Identities=31% Similarity=0.489 Sum_probs=45.9
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-------HHHHHHHHHHHHHHHHh
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-------PEAAEKFKEINRAHSTL 68 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-------~~~~~~f~~i~~Ay~~L 68 (109)
.+.|.+||+....+..+|+++|+++....|||+-... ..+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999999999994321 24667889999998753
No 73
>KOG0724|consensus
Probab=93.24 E-value=0.1 Score=38.93 Aligned_cols=56 Identities=36% Similarity=0.570 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC----CHHHHHHHHHHHHHHHHhcCchhHHHhhhhC
Q psy4517 26 TATPEEIKKQYRKMALKYHPDKNPN----NPEAAEKFKEINRAHSTLSDQTKRNIYDTYG 81 (109)
Q Consensus 26 ~as~~eIk~ayr~l~~~~hPDk~~~----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 81 (109)
.++..+|..+|+..+...||++... .....+.++.|.+||.+|++...|...|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 3577889999999999999998741 1245677999999999999866655666544
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=92.63 E-value=0.29 Score=27.63 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=25.4
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHH
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMAL 41 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~ 41 (109)
-.+.|++|||+++.+.+.|-.+|+....
T Consensus 4 ~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 4 VEEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999877
No 75
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=91.79 E-value=0.57 Score=32.79 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q psy4517 24 PKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQ 71 (109)
Q Consensus 24 ~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~ 71 (109)
+++||.+||.+|+.++..+|--| .+.-..|..||+.|.-.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHH
Confidence 47899999999999999999322 24556789999976533
No 76
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=89.77 E-value=1.3 Score=28.32 Aligned_cols=48 Identities=21% Similarity=0.395 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCHHH----HHHHHHHHHHHHHhcCch
Q psy4517 25 KTATPEEIKKQYRKMALKYHPDKNPNNPEA----AEKFKEINRAHSTLSDQT 72 (109)
Q Consensus 25 ~~as~~eIk~ayr~l~~~~hPDk~~~~~~~----~~~f~~i~~Ay~~L~d~~ 72 (109)
+..+..+++.+.|.+.++.|||..+..++. .+-++.++.-.+.|..+.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 345778899999999999999987665542 234666666666666543
No 77
>KOG3442|consensus
Probab=87.42 E-value=1.4 Score=28.85 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=33.1
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q psy4517 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPN 50 (109)
Q Consensus 13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~ 50 (109)
+-..--.||+|++..+.++|.+.|..|-....+.++++
T Consensus 57 TlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 57 TLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred cHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 34456789999999999999999999999998888864
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=79.28 E-value=11 Score=22.51 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=27.9
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q psy4517 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNP 49 (109)
Q Consensus 16 ~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~ 49 (109)
+.-+++|+.+-++..||+.+-++.++++.--..+
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 4557899999999999999999999988554443
No 79
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=68.08 E-value=3.7 Score=16.33 Aligned_cols=13 Identities=38% Similarity=0.600 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhc
Q psy4517 57 KFKEINRAHSTLS 69 (109)
Q Consensus 57 ~f~~i~~Ay~~L~ 69 (109)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 3667777777663
No 80
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=53.83 E-value=40 Score=19.12 Aligned_cols=41 Identities=24% Similarity=0.300 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517 34 KQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDT 79 (109)
Q Consensus 34 ~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 79 (109)
+..+...+.-||+... .+..+.|.+.|..|++.++...++.
T Consensus 14 ~~~r~~~~~~~p~~~~-----~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLKEN-----RAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4456666777897642 5778889999999998776665553
No 81
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=52.86 E-value=48 Score=19.81 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=27.0
Q ss_pred cchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q psy4517 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNP 49 (109)
Q Consensus 17 ~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~ 49 (109)
--.+.|+.+-+|.+||..+-.+.+++..--..+
T Consensus 5 I~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~P 37 (78)
T PF10041_consen 5 IKTLRNFEPPATDEEIRAAALQYVRKVSGFRKP 37 (78)
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCc
Confidence 345678899999999999999999998655544
No 82
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=49.77 E-value=4.9 Score=23.13 Aligned_cols=31 Identities=32% Similarity=0.607 Sum_probs=20.9
Q ss_pred ccCcchhcCCCCCCCHHHH-HHHHHHHHHHhCCCCC
Q psy4517 14 GDSLYVILELPKTATPEEI-KKQYRKMALKYHPDKN 48 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eI-k~ayr~l~~~~hPDk~ 48 (109)
..+++++||+++ +++ ......+....|||-.
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD~ 36 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDDR 36 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTTH
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHHH
Confidence 356899999854 566 5566777888999765
No 83
>COG2879 Uncharacterized small protein [Function unknown]
Probab=48.99 E-value=44 Score=19.25 Aligned_cols=29 Identities=38% Similarity=0.505 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Q psy4517 34 KQYRKMALKYHPDKNPNNPEAAEKFKEINRA 64 (109)
Q Consensus 34 ~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~A 64 (109)
..|-+-.++.|||+.+ -.-.+.|.+-++|
T Consensus 26 dnYVehmr~~hPd~p~--mT~~EFfrec~da 54 (65)
T COG2879 26 DNYVEHMRKKHPDKPP--MTYEEFFRECQDA 54 (65)
T ss_pred HHHHHHHHHhCcCCCc--ccHHHHHHHHHHh
Confidence 3567778889999986 3334555554443
No 84
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=42.47 E-value=55 Score=17.51 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDT 79 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 79 (109)
.+.++..++.-||+.. ..+....+.+.|..|++..+....+.
T Consensus 12 ~~~~~~~~~~~~~~~~-----~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGLS-----VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556666777788844 25778889999999997665555443
No 85
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=42.02 E-value=80 Score=19.25 Aligned_cols=51 Identities=12% Similarity=0.331 Sum_probs=28.6
Q ss_pred CCCCCC-CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh-hhC
Q psy4517 22 ELPKTA-TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD-TYG 81 (109)
Q Consensus 22 gv~~~a-s~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd-~~~ 81 (109)
|+++++ ...+|-+.+..++..+++ . ..+.+..|.+.| +.||.-+..|| .++
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~---~----~~~~~~~l~~~y--~~~~~~~~~~~~~~~ 103 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG---G----DPELLRGLAQMY--VEDPRFAAMYDKKFG 103 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS----------HHHHHHHHHHT--TSTHHHHHHHG-GGS
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC---C----CHHHHHHHHHHH--HcCHHHHhhccccCC
Confidence 445533 333466666666666655 1 135667777777 67788788887 444
No 86
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=40.11 E-value=63 Score=17.45 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517 35 QYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDT 79 (109)
Q Consensus 35 ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 79 (109)
..+...+.-||+.. ..+..+.|.+.|..|++..+....+.
T Consensus 14 ~~r~~~~~~~p~~~-----~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 14 EQRPKLKKENPDAS-----VTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34555566788744 25788999999999997666555443
No 87
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=39.81 E-value=46 Score=15.85 Aligned_cols=18 Identities=39% Similarity=0.658 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHHhCC
Q psy4517 28 TPEEIKKQYRKMALKYHP 45 (109)
Q Consensus 28 s~~eIk~ayr~l~~~~hP 45 (109)
..++.+.+-|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 447788899999999983
No 88
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=39.78 E-value=90 Score=22.11 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=45.7
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhh
Q psy4517 20 ILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTY 80 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 80 (109)
+.|+....+.++|-+..=.++..+|.|-.-. .++-..|..-|+++.+|.-...|...
T Consensus 2 L~GC~~~~~t~~iC~~nP~LC~dLn~Dg~Cr----~eRtdLI~~Ry~~~~~pt~~~ky~~l 58 (203)
T PF11207_consen 2 LSGCFENPNTEQICENNPELCEDLNDDGWCR----YERTDLIWHRYELKKNPTDKNKYQLL 58 (203)
T ss_pred CcCcCCCCCHHHHHccCHHHHHHhCcchhhc----cHhHHHHHHHHHHhcCCchHHHHHHH
Confidence 4577778899999999999999999666543 46677788888888888888888764
No 89
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=38.98 E-value=38 Score=20.99 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=26.9
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q psy4517 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKN 48 (109)
Q Consensus 13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~ 48 (109)
+...+|.||.++..+|..+|-+.--..+++-+||-.
T Consensus 9 s~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 9 SPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 456789999999988888866665555666677664
No 90
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=36.57 E-value=85 Score=17.93 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+.++..++.-+|+... .+..+.|.+.|..|++.++....+
T Consensus 13 ~~~~r~~~~~~~p~~~~-----~eisk~~g~~Wk~ls~eeK~~y~~ 53 (77)
T cd01389 13 RQDKHAQLKTENPGLTN-----NEISRIIGRMWRSESPEVKAYYKE 53 (77)
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHhhCCHHHHHHHHH
Confidence 55667777888898642 577888999999998766554444
No 91
>PF14706 Tnp_DNA_bind: Transposase DNA-binding; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A.
Probab=35.82 E-value=50 Score=18.51 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHHhcCch
Q psy4517 30 EEIKKQYRKMALKY--HPDKNPNNPEAAEKFKEINRAHSTLSDQT 72 (109)
Q Consensus 30 ~eIk~ayr~l~~~~--hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~ 72 (109)
.-+.++..+++..+ +|... -+.+-+....+.-||..|.++.
T Consensus 15 ~Rl~~Rl~~l~~~la~~p~~S--ip~a~~~wa~tkaAYRF~~N~~ 57 (58)
T PF14706_consen 15 KRLTRRLVKLAESLAEKPGAS--IPQACQDWAETKAAYRFFRNPR 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHTTTS---HHHHTT-HHHHHHHHHHHT-TT
T ss_pred chHHHHHHHHHHHHHHCCCCc--cchhccCHHHHHHHHHhhcCCC
Confidence 34667777776644 56554 3677778888999999998863
No 92
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=35.11 E-value=1.2e+02 Score=22.76 Aligned_cols=56 Identities=23% Similarity=0.207 Sum_probs=37.9
Q ss_pred cCcchhcCCCC-CCCHHHHHHHHHHHHHHh-------CCCCCCCC---HHHHHHHHHHHHHHHHhcC
Q psy4517 15 DSLYVILELPK-TATPEEIKKQYRKMALKY-------HPDKNPNN---PEAAEKFKEINRAHSTLSD 70 (109)
Q Consensus 15 ~~~y~iLgv~~-~as~~eIk~ayr~l~~~~-------hPDk~~~~---~~~~~~f~~i~~Ay~~L~d 70 (109)
..+++-||++. ..+.+|+.+--+.++.+. ++|..+.- ....+.+.++.++|+.|++
T Consensus 82 ~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~ 148 (318)
T PF12725_consen 82 PPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAE 148 (318)
T ss_pred cCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 45788899988 788888777666655544 33332111 1246779999999998874
No 93
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=35.09 E-value=46 Score=25.02 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCC--------------------------HHHHHHHHHHHHHHHHhcCchhH
Q psy4517 25 KTATPEEIKKQYRKMALKYHPDKNPNN--------------------------PEAAEKFKEINRAHSTLSDQTKR 74 (109)
Q Consensus 25 ~~as~~eIk~ayr~l~~~~hPDk~~~~--------------------------~~~~~~f~~i~~Ay~~L~d~~~R 74 (109)
++.+.++|-+|.+-.-..+|||.+..- ..+.-..+.+++.|..+=|-..|
T Consensus 46 ~~~~~~~lw~Ak~l~~Sa~HPDTge~i~~~fRmsa~vP~n~~i~~~mL~~~~s~~~~ifwQw~NQS~Na~vNy~Nr 121 (308)
T PF03820_consen 46 PGLTDDELWKAKKLYDSAFHPDTGEKIPLPFRMSAFVPFNMPITGGMLTPYKSTPAVIFWQWVNQSYNAAVNYTNR 121 (308)
T ss_pred CCCCHHHHHHHHHHhhcccCCCCCCccccccccccccccchHHHHHHhccCcchHHHHHHHHHHhHHHHHHhhhcc
Confidence 346999999999999999999985321 11233467788899887654444
No 94
>KOG0527|consensus
Probab=34.77 E-value=63 Score=24.59 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDT 79 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 79 (109)
.+..|+.+.+-.|+.+. .|+.++|-+-|+.|++.++|-.+|.
T Consensus 74 Sq~~RRkma~qnP~mHN-----SEISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 74 SQGQRRKLAKQNPKMHN-----SEISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred hHHHHHHHHHhCcchhh-----HHHHHHHHHHHhhcCHhhhccHHHH
Confidence 34556666666688863 5899999999999999999988874
No 95
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=33.81 E-value=60 Score=17.58 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=18.5
Q ss_pred chhcCCCCCCCHHHHHHHHHHHH
Q psy4517 18 YVILELPKTATPEEIKKQYRKMA 40 (109)
Q Consensus 18 y~iLgv~~~as~~eIk~ayr~l~ 40 (109)
+.+=|+.+-.+++|.|+.-|+-+
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dv 24 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDV 24 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHH
Confidence 45668899999999999888743
No 96
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=32.50 E-value=26 Score=20.59 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=20.4
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHhCC
Q psy4517 20 ILELPKTATPEEIKKQYRKMALKYHP 45 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l~~~~hP 45 (109)
|+.++.+.+.++||+.|.++.....|
T Consensus 6 i~~Lh~G~~~e~vk~~F~~~~~~Vs~ 31 (71)
T PF04282_consen 6 IKRLHEGEDPEEVKEEFKKLFSDVSA 31 (71)
T ss_pred HHHHhCCCCHHHHHHHHHHHHCCCCH
Confidence 34567788999999999998776655
No 97
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=31.00 E-value=88 Score=17.03 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+..+...+.-||+.. ..+..+.|.+.|.-|++.++....+
T Consensus 12 ~~~~~~~~k~~~p~~~-----~~~i~~~~~~~W~~l~~~eK~~y~~ 52 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLS-----NKEISKILAQMWKNLSEEEKAPYKE 52 (69)
T ss_dssp HHHHHHHHHHHSTTST-----HHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc-----cccchhhHHHHHhcCCHHHHHHHHH
Confidence 4555666677789776 3577888999999987655544433
No 98
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=30.52 E-value=47 Score=20.62 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=17.1
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q psy4517 20 ILELPKTATPEEIKKQYRKMA 40 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l~ 40 (109)
+|-|++.|+..+||+|..++-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 466888999999999988763
No 99
>KOG2320|consensus
Probab=30.45 E-value=92 Score=25.80 Aligned_cols=38 Identities=26% Similarity=0.508 Sum_probs=27.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy4517 22 ELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTL 68 (109)
Q Consensus 22 gv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L 68 (109)
-++..+..++||.++.++.+.|||.+ +.+.+.+|.+.|
T Consensus 396 ~~Ps~~~mEqvk~k~~~m~r~YSP~k---------kl~~Llk~ckLl 433 (651)
T KOG2320|consen 396 STPSDVLMEQVKQKFTAMQRRYSPSK---------KLHALLKACKLL 433 (651)
T ss_pred cCCcHHHHHHHHHHHHHHHHhhChHH---------HHHHHHHHHHHH
Confidence 34446778889999999999999944 455555555544
No 100
>KOG3960|consensus
Probab=30.20 E-value=43 Score=24.69 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhc
Q psy4517 56 EKFKEINRAHSTLS 69 (109)
Q Consensus 56 ~~f~~i~~Ay~~L~ 69 (109)
.+++.||||+++|+
T Consensus 128 RRLkKVNEAFE~LK 141 (284)
T KOG3960|consen 128 RRLKKVNEAFETLK 141 (284)
T ss_pred HHHHHHHHHHHHHH
Confidence 55999999999985
No 101
>smart00427 H2B Histone H2B.
Probab=28.73 E-value=1.1e+02 Score=18.82 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=11.1
Q ss_pred HHHHHHhCCCCCCC
Q psy4517 37 RKMALKYHPDKNPN 50 (109)
Q Consensus 37 r~l~~~~hPDk~~~ 50 (109)
.+..++.|||.+-.
T Consensus 8 ~kvLKqVhpd~giS 21 (89)
T smart00427 8 YKVLKQVHPDTGIS 21 (89)
T ss_pred HHHHHHhCCCcccc
Confidence 56778999999754
No 102
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=28.03 E-value=47 Score=17.74 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=18.2
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHH
Q psy4517 20 ILELPKTATPEEIKKQYRKMALK 42 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l~~~ 42 (109)
|=||+++++.++|++.+.+....
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTSTE
T ss_pred EcCCCCcCCHHHHHHHHHHhhhc
Confidence 34788999999999998875443
No 103
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=27.85 E-value=1e+02 Score=20.90 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHH
Q psy4517 52 PEAAEKFKEINRAHSTLSDQTKRNI 76 (109)
Q Consensus 52 ~~~~~~f~~i~~Ay~~L~d~~~R~~ 76 (109)
.+.+.+...|.++.++|.||.++..
T Consensus 62 eEetkrLa~ireeLE~l~dP~RkEv 86 (159)
T PF04949_consen 62 EEETKRLAEIREELEVLADPMRKEV 86 (159)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHH
Confidence 5667889999999999999988654
No 104
>CHL00030 rpl23 ribosomal protein L23
Probab=27.61 E-value=57 Score=20.07 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.9
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q psy4517 20 ILELPKTATPEEIKKQYRKM 39 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l 39 (109)
++-|++.|+..|||+|..++
T Consensus 23 ~F~V~~~anK~eIK~avE~l 42 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELF 42 (93)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 45688899999999998776
No 105
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=27.13 E-value=24 Score=19.41 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=19.7
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHH
Q psy4517 13 SGDSLYVILELPKTATPEEIKKQYRKMA 40 (109)
Q Consensus 13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~ 40 (109)
+-.+.=+.|||++.+-..-|+++-++++
T Consensus 25 tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 25 TLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4456667788887777777777777664
No 106
>PRK10613 hypothetical protein; Provisional
Probab=26.60 E-value=26 Score=20.69 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=8.5
Q ss_pred CHHHHHHHHHH
Q psy4517 28 TPEEIKKQYRK 38 (109)
Q Consensus 28 s~~eIk~ayr~ 38 (109)
+.++||.+||+
T Consensus 64 Tv~QIK~aYRq 74 (74)
T PRK10613 64 TVKQIKQAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 56788888874
No 107
>PF10769 DUF2594: Protein of unknown function (DUF2594); InterPro: IPR019705 This entry represents proteins with unknown function and appear to be restricted to Enterobacteriaceae.
Probab=26.56 E-value=26 Score=20.68 Aligned_cols=11 Identities=45% Similarity=0.724 Sum_probs=8.6
Q ss_pred CHHHHHHHHHH
Q psy4517 28 TPEEIKKQYRK 38 (109)
Q Consensus 28 s~~eIk~ayr~ 38 (109)
+..+||.+||+
T Consensus 64 Ti~QIK~aYRq 74 (74)
T PF10769_consen 64 TIKQIKTAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 56788988874
No 108
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=25.93 E-value=1e+02 Score=23.62 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=34.6
Q ss_pred ccCcchhcCCCCCC-CHHHHHHHHHHHHHHhCCCC-CCCCHHHHHHHHHHHHHHHHhc
Q psy4517 14 GDSLYVILELPKTA-TPEEIKKQYRKMALKYHPDK-NPNNPEAAEKFKEINRAHSTLS 69 (109)
Q Consensus 14 ~~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~hPDk-~~~~~~~~~~f~~i~~Ay~~L~ 69 (109)
..++|+.|||++.. +...|++. .+.+.+.-|-. +..++.-.....++.++...|.
T Consensus 249 R~~Fy~alGld~~~yD~~Vi~~T-n~~a~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 305 (351)
T CHL00185 249 RSDFYAAIGLDARQFDMHVIRKT-NESAARLFPVVLDVDNPKFFKYLDQCACANLKLI 305 (351)
T ss_pred hHHHHHHhCCCHHHhhHHHHHHh-hHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999854 44445544 56666666755 3344655555666666655553
No 109
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=24.87 E-value=1.5e+02 Score=20.97 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=24.3
Q ss_pred CCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHh
Q psy4517 7 RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKY 43 (109)
Q Consensus 7 ~~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~ 43 (109)
+|.+=+.+-|+-.+|||+-..+.+ +++|-++..+.
T Consensus 29 ~rG~~SPgLdPLtaLGIeArsd~E--RrryAEl~vk~ 63 (200)
T TIGR03759 29 PRGVYSPGLDPLTALGIEARSDEE--RRRYAELWVKQ 63 (200)
T ss_pred CccCcCCCCChhhhhccccCCHHH--HHHHHHHHHHH
Confidence 444445557999999998655544 78888776643
No 110
>KOG3767|consensus
Probab=24.80 E-value=92 Score=23.69 Aligned_cols=28 Identities=25% Similarity=0.448 Sum_probs=23.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q psy4517 22 ELPKTATPEEIKKQYRKMALKYHPDKNP 49 (109)
Q Consensus 22 gv~~~as~~eIk~ayr~l~~~~hPDk~~ 49 (109)
.+++..+.+++=+|.+..-..+|||.+.
T Consensus 61 ~~~p~~t~~~lW~Akkl~dS~~HPDTgE 88 (328)
T KOG3767|consen 61 KVPPGLTDDELWKAKKLYDSTFHPDTGE 88 (328)
T ss_pred CcCCCCcHHHHHHHHHHHhcccCCCCCC
Confidence 3566778999999999999999999964
No 111
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=24.61 E-value=73 Score=18.89 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.9
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q psy4517 20 ILELPKTATPEEIKKQYRKM 39 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l 39 (109)
.+-|++.++..|||++..++
T Consensus 18 ~F~V~~~anK~eIK~avE~l 37 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKL 37 (77)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 45688899999999998876
No 112
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=24.53 E-value=1.3e+02 Score=19.25 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=39.5
Q ss_pred CccCcchhcCCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHH--hcCchhHHHhhh
Q psy4517 13 SGDSLYVILELPKT-----ATPEEIKKQYRKMALKYHPDKNPNNPEA-AEKFKEINRAHST--LSDQTKRNIYDT 79 (109)
Q Consensus 13 ~~~~~y~iLgv~~~-----as~~eIk~ayr~l~~~~hPDk~~~~~~~-~~~f~~i~~Ay~~--L~d~~~R~~Yd~ 79 (109)
+-.+|++.|||+-+ .+.--|-++|.+....-..... +..+. ...=..+.+||+. -|+|..-+.+--
T Consensus 17 sAEdff~ff~V~YDp~vvnV~RLHILKrF~~yL~~~~~~~~-~e~~~~~~yr~aL~~AY~dF~~Stp~~ekvFKV 90 (113)
T PRK00810 17 SAEEFFQLLGVPYDPKVVNVARLHILKRMGQYLAQEDFAGL-PEAEARARCRAVLERAYADFVASSPLDQRVFKV 90 (113)
T ss_pred cHHHHHHHhCCCCCHHHHHHhHHHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHHHHHccCCHhHHHHHHH
Confidence 45679999999863 4555588888888775542211 11222 2334456888885 355666665543
No 113
>PF06975 DUF1299: Protein of unknown function (DUF1299); InterPro: IPR010725 This entry represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that many proteins contain multiple copies of this region.
Probab=24.34 E-value=19 Score=19.03 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=9.2
Q ss_pred HHHHHHhcCch
Q psy4517 62 NRAHSTLSDQT 72 (109)
Q Consensus 62 ~~Ay~~L~d~~ 72 (109)
++||-+|||..
T Consensus 10 qeayvilsdde 20 (47)
T PF06975_consen 10 QEAYVILSDDE 20 (47)
T ss_pred hhheeeccccc
Confidence 78999999864
No 114
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=23.31 E-value=49 Score=22.87 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=27.4
Q ss_pred hcCCCCCCCHHHHHHHHHH---HHHHhCCCCC----------------CCCHHHHHHHHHHHHHHHHhcC
Q psy4517 20 ILELPKTATPEEIKKQYRK---MALKYHPDKN----------------PNNPEAAEKFKEINRAHSTLSD 70 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~---l~~~~hPDk~----------------~~~~~~~~~f~~i~~Ay~~L~d 70 (109)
+|.+.++.+.++++++... .++.-||++. .......+.-..+.++++.|..
T Consensus 64 ~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~ 133 (178)
T PF14606_consen 64 VLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRK 133 (178)
T ss_dssp EEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455677777776554 4556699981 0012233445556778877743
No 115
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=22.71 E-value=2e+02 Score=21.88 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=33.5
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCC-CCCCHHHHHHHHHHHHHHHHhc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDK-NPNNPEAAEKFKEINRAHSTLS 69 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk-~~~~~~~~~~f~~i~~Ay~~L~ 69 (109)
..++|+.|||++..-..++-+.-.+.+.+.-|-. +.+++.-.....++.++...|.
T Consensus 233 R~~Fy~alGld~~~yD~~Vi~~Tn~~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 289 (323)
T cd01047 233 RPDFYEALGLDTTEFDMHVIRETNETAARVFPAVLDVDNPEFRRGLDRLVDLNLKLE 289 (323)
T ss_pred hHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChHHHHHHHHHHHHHHHHH
Confidence 4689999999985544444444466666666755 3334554555555555555443
No 116
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=21.50 E-value=1.1e+02 Score=18.22 Aligned_cols=24 Identities=33% Similarity=0.283 Sum_probs=20.0
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHh
Q psy4517 20 ILELPKTATPEEIKKQYRKMALKY 43 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l~~~~ 43 (109)
.|.++..+|..+||..--+.++.+
T Consensus 3 ~l~v~~~aTl~~IK~~lw~~A~~~ 26 (78)
T smart00143 3 TLRVLREATLSTIKHELFKQARKM 26 (78)
T ss_pred eEEccccccHHHHHHHHHHHHHhC
Confidence 467888999999999888887765
No 117
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=21.24 E-value=1e+02 Score=19.64 Aligned_cols=22 Identities=23% Similarity=0.045 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCchhHHHhhhh
Q psy4517 59 KEINRAHSTLSDQTKRNIYDTY 80 (109)
Q Consensus 59 ~~i~~Ay~~L~d~~~R~~Yd~~ 80 (109)
.++.+.+.+|+||.++++...-
T Consensus 4 ~~~~~~fkaLadptRl~IL~~L 25 (117)
T PRK10141 4 LLPLQLFKILSDETRLGIVLLL 25 (117)
T ss_pred hHHHHHHHHhCCHHHHHHHHHH
Confidence 4567889999999999998854
No 118
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=21.05 E-value=1.5e+02 Score=22.80 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=32.8
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHHHHHHh
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKN-PNNPEAAEKFKEINRAHSTL 68 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~-~~~~~~~~~f~~i~~Ay~~L 68 (109)
..++|+.|||++..-..++-+.-.+.+.+.-|-.- .+++.-.....++.++...|
T Consensus 253 R~~Fy~alGlD~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 308 (355)
T PRK13654 253 RPDFYEALGLDAREYDQEVIRKTNETSARVFPVVLDVDDPRFYARLERCVENNEKL 308 (355)
T ss_pred chHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChHHHHHHHHHHHHHHHH
Confidence 46899999999855444444444666667767652 23455444455555544444
No 119
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=21.03 E-value=1.5e+02 Score=22.57 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=32.8
Q ss_pred ccCcchhcCCCCCC-CHHHHHHHHHHHHHHhCCCC-CCCCHHHHHHHHHHHHHHHHh
Q psy4517 14 GDSLYVILELPKTA-TPEEIKKQYRKMALKYHPDK-NPNNPEAAEKFKEINRAHSTL 68 (109)
Q Consensus 14 ~~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~hPDk-~~~~~~~~~~f~~i~~Ay~~L 68 (109)
..++|+.|||++.. +...|++. .+.+.+.-|-. +.+++.-.....++..+...|
T Consensus 243 R~~Fy~alGld~~~yD~~Vi~~T-ne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 298 (337)
T TIGR02029 243 RPGFYEALGLDATDFDLQVFRNT-NETSGRIFPMTLNTEHPRFRRLLDRMAGYSEKI 298 (337)
T ss_pred cHHHHHHhCCCHHHhhHHHHHHh-hHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999854 55545554 55666666755 333455445555555555444
No 120
>PLN00158 histone H2B; Provisional
Probab=20.98 E-value=1.9e+02 Score=18.66 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=11.8
Q ss_pred HHHHHHHhCCCCCCC
Q psy4517 36 YRKMALKYHPDKNPN 50 (109)
Q Consensus 36 yr~l~~~~hPDk~~~ 50 (109)
-.+..++.|||.+-.
T Consensus 33 I~kVLKQVhPd~gIS 47 (116)
T PLN00158 33 IYKVLKQVHPDTGIS 47 (116)
T ss_pred HHHHHHHhCCCCCcc
Confidence 456688999999864
No 121
>smart00360 RRM RNA recognition motif.
Probab=20.94 E-value=1.1e+02 Score=15.60 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=16.0
Q ss_pred cCCCCCCCHHHHHHHHHHHH
Q psy4517 21 LELPKTATPEEIKKQYRKMA 40 (109)
Q Consensus 21 Lgv~~~as~~eIk~ayr~l~ 40 (109)
-||+...+.++|++.+....
T Consensus 2 ~~l~~~~~~~~l~~~f~~~g 21 (71)
T smart00360 2 GNLPPDVTEEELRELFSKFG 21 (71)
T ss_pred CCCCcccCHHHHHHHHHhhC
Confidence 46788889999999887654
No 122
>smart00362 RRM_2 RNA recognition motif.
Probab=20.53 E-value=1.1e+02 Score=15.70 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=16.8
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q psy4517 20 ILELPKTATPEEIKKQYRKMA 40 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l~ 40 (109)
|-||+...+.++|++.+.+..
T Consensus 4 i~~l~~~~~~~~l~~~~~~~g 24 (72)
T smart00362 4 VGNLPPDVTEEDLKELFSKFG 24 (72)
T ss_pred EcCCCCcCCHHHHHHHHHhcC
Confidence 557888899999999887653
No 123
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=20.52 E-value=2.1e+02 Score=17.12 Aligned_cols=40 Identities=15% Similarity=0.352 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTY 80 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 80 (109)
++.|......||-+++ .+..+..---+|-+|++|..+--.
T Consensus 21 r~~f~h~Ln~Y~~~Rn--------V~~Lv~sL~~vLd~P~KrqllplL 60 (78)
T cd07356 21 REEFIHCLNDYHAKRN--------VYDLVQSLKVVLDTPEKRQLLPLL 60 (78)
T ss_pred HHHHHHHHHHHHhccc--------HHHHHHHHHHHhCCHhHhHHHHHH
Confidence 4444555556677666 355555556678889999887643
No 124
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=20.45 E-value=96 Score=18.89 Aligned_cols=20 Identities=35% Similarity=0.492 Sum_probs=16.5
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q psy4517 20 ILELPKTATPEEIKKQYRKM 39 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l 39 (109)
.+-|++.++..|||++...+
T Consensus 24 ~F~V~~~a~K~eIK~aie~l 43 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKL 43 (92)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 45678899999999998776
No 125
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=20.22 E-value=2e+02 Score=16.94 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCC
Q psy4517 24 PKTATPEEIKKQYRKMALKYHPDK 47 (109)
Q Consensus 24 ~~~as~~eIk~ayr~l~~~~hPDk 47 (109)
..+.++++|-.-+++++..+-|+.
T Consensus 32 ~~~I~PEeIv~iH~~~v~~l~~~~ 55 (77)
T PF08673_consen 32 EKDISPEEIVEIHKSAVQELSPSL 55 (77)
T ss_dssp HTT--HHHHHHHHHHHHHHH-TTS
T ss_pred HcCCCHHHHHHHHHHHHHHHcccc
Confidence 357799999999999999999886
Done!