Query psy4517
Match_columns 109
No_of_seqs 170 out of 1097
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 19:11:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctw_A DNAJ homolog subfamily 99.9 1.1E-27 3.9E-32 152.1 8.8 99 6-104 8-106 (109)
2 2dn9_A DNAJ homolog subfamily 99.9 2.1E-25 7.2E-30 133.9 7.8 75 11-85 3-77 (79)
3 2ctp_A DNAJ homolog subfamily 99.9 1.2E-24 4.2E-29 130.3 7.9 74 11-85 3-76 (78)
4 2ej7_A HCG3 gene; HCG3 protein 99.9 1.8E-24 6.2E-29 130.7 8.5 74 12-85 6-80 (82)
5 1hdj_A Human HSP40, HDJ-1; mol 99.9 1.3E-24 4.5E-29 129.9 7.2 71 14-85 2-72 (77)
6 2cug_A Mkiaa0962 protein; DNAJ 99.9 4E-24 1.4E-28 130.9 8.2 77 7-84 9-85 (88)
7 2ctr_A DNAJ homolog subfamily 99.9 5.3E-24 1.8E-28 130.3 8.5 74 11-85 3-76 (88)
8 2ctq_A DNAJ homolog subfamily 99.9 2.1E-24 7.3E-29 137.5 5.7 75 12-86 17-91 (112)
9 2och_A Hypothetical protein DN 99.9 8.7E-24 3E-28 125.2 7.9 67 13-82 6-72 (73)
10 2yua_A Williams-beuren syndrom 99.9 7.9E-24 2.7E-28 132.2 8.0 73 10-82 12-84 (99)
11 2dmx_A DNAJ homolog subfamily 99.9 9.6E-24 3.3E-28 130.1 7.4 76 11-86 5-81 (92)
12 1wjz_A 1700030A21RIK protein; 99.9 2.1E-23 7.2E-28 128.8 8.1 73 11-83 12-90 (94)
13 1bq0_A DNAJ, HSP40; chaperone, 99.9 3.1E-24 1.1E-28 134.8 4.0 73 14-86 2-74 (103)
14 2lgw_A DNAJ homolog subfamily 99.9 1.8E-23 6.1E-28 130.7 6.9 72 15-86 2-74 (99)
15 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 2.1E-23 7.3E-28 132.2 6.1 75 9-83 9-87 (109)
16 3apq_A DNAJ homolog subfamily 99.9 7.4E-23 2.5E-27 141.2 7.6 73 15-87 2-74 (210)
17 2o37_A Protein SIS1; HSP40, J- 99.9 1.2E-22 4.3E-27 125.2 7.5 70 13-85 6-75 (92)
18 2l6l_A DNAJ homolog subfamily 99.8 1.3E-21 4.5E-26 130.7 6.7 70 12-81 7-82 (155)
19 1gh6_A Large T antigen; tumor 99.8 1.1E-22 3.6E-27 130.1 -0.5 83 14-100 7-92 (114)
20 2ys8_A RAB-related GTP-binding 99.8 2.4E-21 8.1E-26 119.1 4.9 62 14-76 26-87 (90)
21 2pf4_E Small T antigen; PP2A, 99.8 2.4E-22 8.3E-27 136.5 -0.7 67 13-83 9-77 (174)
22 3hho_A CO-chaperone protein HS 99.8 9.4E-21 3.2E-25 128.9 6.8 69 13-81 2-77 (174)
23 1faf_A Large T antigen; J doma 99.8 7.1E-21 2.4E-25 114.4 4.2 66 13-83 9-76 (79)
24 3bvo_A CO-chaperone protein HS 99.8 4.1E-20 1.4E-24 128.8 7.6 68 13-80 41-115 (207)
25 1iur_A KIAA0730 protein; DNAJ 99.8 2.6E-20 9E-25 114.0 4.9 66 9-74 10-76 (88)
26 1fpo_A HSC20, chaperone protei 99.8 4.6E-20 1.6E-24 125.2 6.5 67 16-82 2-75 (171)
27 3lz8_A Putative chaperone DNAJ 99.8 3.4E-21 1.2E-25 142.2 0.0 69 13-82 26-94 (329)
28 3apo_A DNAJ homolog subfamily 99.8 3.2E-20 1.1E-24 148.1 1.0 78 10-87 16-93 (780)
29 1n4c_A Auxilin; four helix bun 99.8 6.5E-20 2.2E-24 125.3 2.1 64 14-77 116-182 (182)
30 2guz_A Mitochondrial import in 99.8 2.1E-19 7.2E-24 105.9 3.4 59 12-74 11-70 (71)
31 3uo3_A J-type CO-chaperone JAC 99.7 7.2E-19 2.5E-23 120.2 3.9 66 13-81 9-81 (181)
32 2qwo_B Putative tyrosine-prote 99.7 4.9E-19 1.7E-23 109.1 2.3 56 15-70 33-91 (92)
33 3ag7_A Putative uncharacterize 99.7 1.5E-18 5.1E-23 109.5 2.7 58 14-72 40-104 (106)
34 2guz_B Mitochondrial import in 99.3 4E-12 1.4E-16 73.3 4.4 53 14-70 3-58 (65)
35 2y4t_A DNAJ homolog subfamily 99.3 3.5E-12 1.2E-16 93.3 5.0 65 15-79 382-449 (450)
36 2pzi_A Probable serine/threoni 92.5 0.086 2.9E-06 41.4 3.2 47 13-67 627-675 (681)
37 2crj_A SWI/SNF-related matrix- 73.1 11 0.00038 21.7 5.7 48 15-78 12-59 (92)
38 1hry_A Human SRY; DNA, DNA-bin 71.6 10 0.00036 20.8 5.2 41 33-78 16-56 (76)
39 1hme_A High mobility group pro 71.3 11 0.00037 20.8 6.1 48 15-78 11-58 (77)
40 1wgf_A Upstream binding factor 70.3 11 0.00039 21.6 5.0 41 33-78 32-72 (90)
41 2e6o_A HMG box-containing prot 65.5 15 0.00052 20.9 4.8 41 33-78 29-69 (87)
42 1k99_A Upstream binding factor 61.5 22 0.00075 20.8 6.6 49 15-79 15-63 (99)
43 2co9_A Thymus high mobility gr 60.7 17 0.00059 21.4 4.5 41 33-78 29-69 (102)
44 3f27_D Transcription factor SO 58.1 22 0.00076 19.8 4.7 41 33-78 18-58 (83)
45 1wz6_A HMG-box transcription f 57.1 23 0.00079 19.7 5.7 48 15-78 12-59 (82)
46 1j46_A SRY, sex-determining re 55.4 23 0.00079 19.9 4.3 41 33-78 16-56 (85)
47 4a3n_A Transcription factor SO 52.9 25 0.00084 18.8 4.0 41 33-78 14-54 (71)
48 4euw_A Transcription factor SO 52.9 22 0.00075 21.1 4.1 41 33-78 41-81 (106)
49 2cs1_A PMS1 protein homolog 1; 50.9 33 0.0011 19.6 5.0 49 15-79 12-60 (92)
50 2eqz_A High mobility group pro 50.8 32 0.0011 19.4 4.4 43 33-78 27-69 (86)
51 2d7l_A WD repeat and HMG-box D 48.8 30 0.001 19.6 4.0 43 33-79 17-59 (81)
52 1qqr_A Streptokinase domain B; 48.0 10 0.00034 24.2 2.0 32 16-47 33-64 (138)
53 1ug2_A 2610100B20RIK gene prod 47.1 12 0.0004 22.4 2.0 23 26-48 67-89 (95)
54 1i11_A Transcription factor SO 44.5 37 0.0013 18.8 4.0 42 33-79 16-57 (81)
55 1aab_A High mobility group pro 42.3 34 0.0012 19.0 3.6 43 33-78 19-61 (83)
56 3nm9_A HMG-D, high mobility gr 41.0 43 0.0015 18.1 4.4 38 33-78 15-52 (73)
57 2cqn_A Formin-binding protein 39.8 51 0.0017 18.6 5.2 54 26-80 5-61 (77)
58 2yrq_A High mobility group pro 37.6 78 0.0027 20.1 5.9 41 33-78 113-153 (173)
59 2b7e_A PRE-mRNA processing pro 36.9 51 0.0018 17.8 4.6 51 30-80 3-55 (59)
60 3u2b_C Transcription factor SO 35.2 56 0.0019 17.8 4.0 41 33-78 14-54 (79)
61 1cf7_A Protein (transcription 32.7 69 0.0023 18.0 4.2 43 26-79 9-51 (76)
62 2lr8_A CAsp8-associated protei 38.7 9.4 0.00032 21.5 0.0 22 26-47 47-68 (70)
63 2lxi_A RNA-binding protein 10; 31.8 41 0.0014 18.8 2.8 21 20-40 6-26 (91)
64 1gt0_D Transcription factor SO 30.7 48 0.0016 18.2 2.9 41 33-78 14-54 (80)
65 2gzk_A Sex-determining region 30.3 1E+02 0.0035 19.2 5.4 41 33-78 100-140 (159)
66 1wxl_A Single-strand recogniti 28.8 73 0.0025 17.1 5.1 38 33-78 15-52 (73)
67 2lef_A LEF-1 HMG, protein (lym 28.5 65 0.0022 18.0 3.3 41 33-78 14-54 (86)
68 1ckt_A High mobility group 1 p 28.1 73 0.0025 16.9 4.3 42 34-78 14-55 (71)
69 2lhj_A High mobility group pro 25.9 20 0.00068 20.8 0.6 42 34-78 35-76 (97)
70 1vq8_S 50S ribosomal protein L 25.7 43 0.0015 19.4 2.1 21 20-40 26-46 (85)
71 1iqt_A AUF1, heterogeneous nuc 24.9 67 0.0023 16.7 2.8 19 21-39 5-23 (75)
72 1x4a_A Splicing factor, argini 24.6 93 0.0032 17.6 3.6 20 20-39 27-46 (109)
73 3r8s_T 50S ribosomal protein L 24.2 47 0.0016 19.6 2.1 20 20-39 31-50 (93)
74 3j21_T 50S ribosomal protein L 23.7 49 0.0017 19.2 2.1 20 20-39 27-46 (86)
75 2lv7_A Calcium-binding protein 23.1 1.1E+02 0.0039 17.4 3.8 17 29-49 35-51 (100)
76 2zjr_Q 50S ribosomal protein L 23.0 50 0.0017 19.5 2.1 21 20-40 26-46 (95)
77 3tve_T 50S ribosomal protein L 22.8 52 0.0018 19.3 2.1 20 20-39 25-44 (92)
78 3tq6_A Transcription factor A, 22.2 1.8E+02 0.006 19.3 5.0 41 33-78 21-61 (214)
79 1xou_B Z5138 gene product; coi 21.7 1E+02 0.0035 17.6 3.1 28 51-81 48-75 (95)
80 2gsv_A Hypothetical protein YV 21.6 96 0.0033 17.3 2.9 42 32-73 30-71 (80)
81 3hm5_A DNA methyltransferase 1 21.5 76 0.0026 18.7 2.6 22 26-47 66-87 (93)
82 1cg7_A Protein (NON histone pr 21.0 19 0.00066 20.7 -0.1 38 37-79 36-73 (93)
83 3tmm_A Transcription factor A, 20.0 1.4E+02 0.0048 20.2 4.2 41 33-78 53-93 (238)
No 1
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.95 E-value=1.1e-27 Score=152.06 Aligned_cols=99 Identities=73% Similarity=1.141 Sum_probs=91.4
Q ss_pred CCCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 6 PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 6 ~~~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
..|.++....++|+||||+++++.++||++|+++++++|||++++.+++.+.|++|++||++|+||.+|..||.++..+.
T Consensus 8 ~~r~~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~ 87 (109)
T 2ctw_A 8 RQRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL 87 (109)
T ss_dssp CCCCTTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred CCcccCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence 45667888899999999999999999999999999999999998778899999999999999999999999999999998
Q ss_pred hhhhhhccccchhhhhhcc
Q psy4517 86 YVAEQFGEENVNTYFMVTS 104 (109)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ 104 (109)
.....++.+++..||...+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~ 106 (109)
T 2ctw_A 88 YVAEQFGEENVNTYFVSGP 106 (109)
T ss_dssp HHHHHTCTTHHHHHHHSSS
T ss_pred ccccccCCcchHHHhhcCC
Confidence 8888899999999986544
No 2
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=2.1e-25 Score=133.94 Aligned_cols=75 Identities=47% Similarity=0.744 Sum_probs=69.4
Q ss_pred CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 11 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
+....+||+||||+++++.++||++|+++++++|||++++.+.+.+.|++|++||++|+||.+|..||.+|..+.
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 77 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS 77 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence 456789999999999999999999999999999999998777889999999999999999999999999887653
No 3
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=130.33 Aligned_cols=74 Identities=46% Similarity=0.713 Sum_probs=68.3
Q ss_pred CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 11 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
+.+..+||+||||+++++.++||++|+++++++|||++.. +.+.+.|++|++||++|+||.+|..||.++..+.
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 76 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPS 76 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCSC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 4567899999999999999999999999999999999964 7889999999999999999999999999887653
No 4
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=1.8e-24 Score=130.66 Aligned_cols=74 Identities=50% Similarity=0.817 Sum_probs=67.6
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
+...+||+||||+++++.++||++|+++++++|||+++.. +.+.+.|++|++||++|+||.+|..||.+|..+.
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 4558999999999999999999999999999999999765 3678899999999999999999999999987654
No 5
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.91 E-value=1.3e-24 Score=129.90 Aligned_cols=71 Identities=55% Similarity=0.887 Sum_probs=65.7
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
+.|||+||||+++++.++||++|+++++++|||++++ +.+.+.|+.|++||++|+||.+|..||.+|..+.
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 72 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL 72 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence 3689999999999999999999999999999999974 6788999999999999999999999999886654
No 6
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.91 E-value=4e-24 Score=130.88 Aligned_cols=77 Identities=39% Similarity=0.644 Sum_probs=69.6
Q ss_pred CCCCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCC
Q psy4517 7 RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLG 84 (109)
Q Consensus 7 ~~~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 84 (109)
.+.......|||+||||+++++.++||++|+++++++|||++++ +.+.+.|++|++||++|+||.+|..||.+|..+
T Consensus 9 ~~~~~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 9 LQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp CCCCCSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred hhhhccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 34455667899999999999999999999999999999999975 678899999999999999999999999988654
No 7
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=5.3e-24 Score=130.34 Aligned_cols=74 Identities=50% Similarity=0.793 Sum_probs=67.8
Q ss_pred CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 11 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
+....+||+||||+++++.++||++|+++++++|||+++ .+.+.+.|++|++||++|+||.+|..||.++..++
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 76 (88)
T 2ctr_A 3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAF 76 (88)
T ss_dssp SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence 456689999999999999999999999999999999997 47889999999999999999999999999875443
No 8
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=2.1e-24 Score=137.50 Aligned_cols=75 Identities=28% Similarity=0.568 Sum_probs=69.0
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517 12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY 86 (109)
Q Consensus 12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 86 (109)
....|||+||||+++++.++||++|+++++++|||++++.+.+.+.|++|++||++|+||.+|..||.++..+..
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 456899999999999999999999999999999999986678899999999999999999999999998765543
No 9
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.90 E-value=8.7e-24 Score=125.20 Aligned_cols=67 Identities=51% Similarity=0.822 Sum_probs=61.6
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGS 82 (109)
Q Consensus 13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 82 (109)
...+||+||||+++++.++||++|+++++++|||++++. .+.|++|++||++|+||.+|..||.+|.
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 357999999999999999999999999999999998753 5789999999999999999999999875
No 10
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=7.9e-24 Score=132.17 Aligned_cols=73 Identities=40% Similarity=0.557 Sum_probs=67.4
Q ss_pred CCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517 10 MSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGS 82 (109)
Q Consensus 10 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 82 (109)
......+||+||||+++++.++||++|+++++++|||++++.+.+.+.|++|++||++|+||.+|..||....
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 3456789999999999999999999999999999999998778899999999999999999999999998553
No 11
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=9.6e-24 Score=130.06 Aligned_cols=76 Identities=46% Similarity=0.747 Sum_probs=68.6
Q ss_pred CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517 11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY 86 (109)
Q Consensus 11 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 86 (109)
.....+||+||||+++++.++||++|+++++++|||+++.. +.+.+.|++|++||++|+||.+|..||.++..++.
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (92)
T 2dmx_A 5 SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWR 81 (92)
T ss_dssp CCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSC
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 34567999999999999999999999999999999998754 57889999999999999999999999998876653
No 12
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.89 E-value=2.1e-23 Score=128.81 Aligned_cols=73 Identities=33% Similarity=0.526 Sum_probs=65.8
Q ss_pred CCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCC
Q psy4517 11 STSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN------PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSL 83 (109)
Q Consensus 11 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 83 (109)
.....+||+||||+++++.++||++|+++++++|||+++.. ..+.+.|++|++||++|+||.+|..||.....
T Consensus 12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 34568999999999999999999999999999999998642 56789999999999999999999999987654
No 13
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.89 E-value=3.1e-24 Score=134.83 Aligned_cols=73 Identities=45% Similarity=0.761 Sum_probs=68.0
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY 86 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 86 (109)
..+||+||||+++++.++||++|+++++++|||+++..+.+.+.|++|++||++|+||.+|..||.++..+..
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 74 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE 74 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence 3689999999999999999999999999999999986677889999999999999999999999999887654
No 14
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.89 E-value=1.8e-23 Score=130.68 Aligned_cols=72 Identities=53% Similarity=0.896 Sum_probs=64.4
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY 86 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 86 (109)
.|||+||||+++++.++||++|+++++++|||+++.. +.+.+.|++|++||++|+||.+|..||.+|..+..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~ 74 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT 74 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 5899999999999999999999999999999998754 46889999999999999999999999998766554
No 15
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.88 E-value=2.1e-23 Score=132.16 Aligned_cols=75 Identities=31% Similarity=0.469 Sum_probs=67.2
Q ss_pred CCCCCccCcchhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---CHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCC
Q psy4517 9 KMSTSGDSLYVILELPKTA-TPEEIKKQYRKMALKYHPDKNPN---NPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSL 83 (109)
Q Consensus 9 ~~~~~~~~~y~iLgv~~~a-s~~eIk~ayr~l~~~~hPDk~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 83 (109)
.......+||+||||++++ +.++||++|+++++++|||++++ .+.+.+.|++|++||++|+||.+|..||.++..
T Consensus 9 ~~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 9 ELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TSTTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred HHHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 3445678999999999999 99999999999999999999875 356789999999999999999999999997744
No 16
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.88 E-value=7.4e-23 Score=141.16 Aligned_cols=73 Identities=48% Similarity=0.801 Sum_probs=68.3
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchh
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYV 87 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 87 (109)
.|||+||||+++++.++||++||++++++|||++++.+++.++|++|++||++|+||.+|..||.+|..+...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~ 74 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED 74 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccc
Confidence 5899999999999999999999999999999999877889999999999999999999999999999776543
No 17
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.2e-22 Score=125.18 Aligned_cols=70 Identities=49% Similarity=0.766 Sum_probs=63.3
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCc
Q psy4517 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGL 85 (109)
Q Consensus 13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 85 (109)
...+||+||||+++++.++||++|+++++++|||+++.. .+.|++|++||++|+||.+|..||.++..+.
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 75 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEAA 75 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHh
Confidence 357899999999999999999999999999999998654 4689999999999999999999999875544
No 18
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=130.65 Aligned_cols=70 Identities=31% Similarity=0.554 Sum_probs=63.3
Q ss_pred CCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH------HHHHHHHHHHHHHHHhcCchhHHHhhhhC
Q psy4517 12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP------EAAEKFKEINRAHSTLSDQTKRNIYDTYG 81 (109)
Q Consensus 12 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 81 (109)
....|||+||||+++++.++||++|+++++++|||+++... .+.+.|++|++||++|+||.+|..||..+
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~ 82 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR 82 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34579999999999999999999999999999999987642 36789999999999999999999999754
No 19
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.84 E-value=1.1e-22 Score=130.09 Aligned_cols=83 Identities=23% Similarity=0.358 Sum_probs=69.8
Q ss_pred ccCcchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCch-hhhh
Q psy4517 14 GDSLYVILELPKTATP--EEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLY-VAEQ 90 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~--~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~-~~~~ 90 (109)
..++|+||||+++++. ++||++||++++++|||++++ .++|++|++||++|+||.+|..||.++..... ....
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~~w~~~~~~~ 82 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEIPT 82 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSCCCCCCCCCC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhcccccccccCCC
Confidence 4689999999999998 999999999999999999875 47899999999999999999999987754322 3344
Q ss_pred hccccchhhh
Q psy4517 91 FGEENVNTYF 100 (109)
Q Consensus 91 ~~~~~~~~~~ 100 (109)
++...+..||
T Consensus 83 ~g~p~w~~w~ 92 (114)
T 1gh6_A 83 YGTDEWEQWW 92 (114)
T ss_dssp CSSSCHHHHH
T ss_pred CCCchHHHHH
Confidence 5566666665
No 20
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.4e-21 Score=119.06 Aligned_cols=62 Identities=29% Similarity=0.485 Sum_probs=57.5
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHH
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI 76 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 76 (109)
..+||+||||+++++.++||++|+++++++|||++.. +.+.+.|++|++||++|+|+.+|..
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccC
Confidence 4799999999999999999999999999999999974 6788999999999999999988764
No 21
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.83 E-value=2.4e-22 Score=136.53 Aligned_cols=67 Identities=27% Similarity=0.400 Sum_probs=59.0
Q ss_pred CccCcchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCC
Q psy4517 13 SGDSLYVILELPKTAT--PEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSL 83 (109)
Q Consensus 13 ~~~~~y~iLgv~~~as--~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 83 (109)
...++|+||||+++++ .++||+|||++++++|||++++ .++|++|++||++|+||.+|..||.+|..
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~~ 77 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGGF 77 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGGC
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCCc
Confidence 3479999999999998 6999999999999999999875 47899999999999999999999999863
No 22
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.83 E-value=9.4e-21 Score=128.88 Aligned_cols=69 Identities=25% Similarity=0.370 Sum_probs=61.3
Q ss_pred CccCcchhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCCHH-----HHHHHHHHHHHHHHhcCchhHHHhhhhC
Q psy4517 13 SGDSLYVILELPKTAT--PEEIKKQYRKMALKYHPDKNPNNPE-----AAEKFKEINRAHSTLSDQTKRNIYDTYG 81 (109)
Q Consensus 13 ~~~~~y~iLgv~~~as--~~eIk~ayr~l~~~~hPDk~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 81 (109)
...|||+||||+++++ ..+||++||++++++|||++++... +.+.|..|++||+||+||.+|..||...
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 77 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSL 77 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHc
Confidence 3579999999999887 9999999999999999999876543 6689999999999999999999999644
No 23
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.82 E-value=7.1e-21 Score=114.38 Aligned_cols=66 Identities=21% Similarity=0.375 Sum_probs=58.4
Q ss_pred CccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCC
Q psy4517 13 SGDSLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSL 83 (109)
Q Consensus 13 ~~~~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 83 (109)
+..++|+||||+++ ++.++||++||++++++|||++++ .+.|++|++||++|+++..|.. +.+|..
T Consensus 9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~-~~~g~~ 76 (79)
T 1faf_A 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLR-MNLGGT 76 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHT-TCCSSC
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHH-HhcCCc
Confidence 34689999999999 999999999999999999999865 5789999999999999999988 445543
No 24
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.81 E-value=4.1e-20 Score=128.78 Aligned_cols=68 Identities=15% Similarity=0.269 Sum_probs=60.3
Q ss_pred CccCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCH-----HHHHHHHHHHHHHHHhcCchhHHHhhhh
Q psy4517 13 SGDSLYVILELPKT--ATPEEIKKQYRKMALKYHPDKNPNNP-----EAAEKFKEINRAHSTLSDQTKRNIYDTY 80 (109)
Q Consensus 13 ~~~~~y~iLgv~~~--as~~eIk~ayr~l~~~~hPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 80 (109)
...|||+||||++. ++..+||++||+|++++|||++++.. .+.+.|++|++||+||+||.+|..||..
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~ 115 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK 115 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 35799999999986 79999999999999999999987543 2567899999999999999999999953
No 25
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.80 E-value=2.6e-20 Score=114.00 Aligned_cols=66 Identities=30% Similarity=0.372 Sum_probs=59.3
Q ss_pred CCCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCchhH
Q psy4517 9 KMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKR 74 (109)
Q Consensus 9 ~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~-~~~~~~f~~i~~Ay~~L~d~~~R 74 (109)
+.+.+..++|+||||+++++.++||++|+++++++|||++++. +.+.+.|++|++||++|++...|
T Consensus 10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 3455668999999999999999999999999999999999865 45889999999999999988766
No 26
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.80 E-value=4.6e-20 Score=125.18 Aligned_cols=67 Identities=22% Similarity=0.373 Sum_probs=60.9
Q ss_pred CcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCH-----HHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517 16 SLYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNP-----EAAEKFKEINRAHSTLSDQTKRNIYDTYGS 82 (109)
Q Consensus 16 ~~y~iLgv~~~a--s~~eIk~ayr~l~~~~hPDk~~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 82 (109)
|||+||||++++ +..+||++|+++++++|||++++.+ .+.+.|..|++||+||+||.+|..||....
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 799999999998 9999999999999999999987653 256789999999999999999999997654
No 27
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.80 E-value=3.4e-21 Score=142.18 Aligned_cols=69 Identities=35% Similarity=0.564 Sum_probs=0.0
Q ss_pred CccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCC
Q psy4517 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGS 82 (109)
Q Consensus 13 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 82 (109)
+..|||+||||+++|+.++||+|||+|+++||||++++ +.+.++|++|++||++|+||.+|..||.++.
T Consensus 26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 45799999999999999999999999999999999874 5788999999999999999999999999743
No 28
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.77 E-value=3.2e-20 Score=148.07 Aligned_cols=78 Identities=45% Similarity=0.741 Sum_probs=40.8
Q ss_pred CCCCccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhCCCCchh
Q psy4517 10 MSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYV 87 (109)
Q Consensus 10 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 87 (109)
......|||+||||+++|+.++||+|||++++++|||++++.+.+.++|++|++||++|+||.+|..||.+|..+...
T Consensus 16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~ 93 (780)
T 3apo_A 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED 93 (780)
T ss_dssp -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-------
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccccc
Confidence 445568999999999999999999999999999999999767888999999999999999999999999999776543
No 29
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.77 E-value=6.5e-20 Score=125.29 Aligned_cols=64 Identities=36% Similarity=0.604 Sum_probs=58.7
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHH---HHHHHHHHHHHHHHhcCchhHHHh
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLSDQTKRNIY 77 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~---~~~~f~~i~~Ay~~L~d~~~R~~Y 77 (109)
..++|+||||++.++.++||++||++++++|||++++... +.+.|++|++||++|+|+.+|..|
T Consensus 116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 3689999999999999999999999999999999875432 789999999999999999999876
No 30
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.1e-19 Score=105.88 Aligned_cols=59 Identities=29% Similarity=0.344 Sum_probs=52.6
Q ss_pred CCccCcchhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhH
Q psy4517 12 TSGDSLYVILELPK-TATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKR 74 (109)
Q Consensus 12 ~~~~~~y~iLgv~~-~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R 74 (109)
.+..++|+||||++ +++.++||++||++++++|||++++ .+.|++|++||++|+++..|
T Consensus 11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhhhhc
Confidence 35578999999999 7999999999999999999999754 46899999999999987655
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.74 E-value=7.2e-19 Score=120.25 Aligned_cols=66 Identities=27% Similarity=0.461 Sum_probs=59.2
Q ss_pred CccCcchhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhhhC
Q psy4517 13 SGDSLYVIL------ELPK-TATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYG 81 (109)
Q Consensus 13 ~~~~~y~iL------gv~~-~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 81 (109)
...|||+|| |+++ +++..+||++||++++++|||++++ +.+.|..|++||+||+||.+|..||...
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 447999999 4665 8999999999999999999999875 5688999999999999999999999743
No 32
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.74 E-value=4.9e-19 Score=109.05 Aligned_cols=56 Identities=34% Similarity=0.512 Sum_probs=51.1
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH---HHHHHHHHHHHHHHHhcC
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP---EAAEKFKEINRAHSTLSD 70 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~---~~~~~f~~i~~Ay~~L~d 70 (109)
.++|++|||++.+|.++||+|||++++++|||++++.+ .+.++|++|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999987643 478899999999999974
No 33
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.72 E-value=1.5e-18 Score=109.51 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=51.3
Q ss_pred ccCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CH----HHHHHHHHHHHHHHHhcCch
Q psy4517 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPN---NP----EAAEKFKEINRAHSTLSDQT 72 (109)
Q Consensus 14 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~---~~----~~~~~f~~i~~Ay~~L~d~~ 72 (109)
..+||+|||++. +|.++||++||++++++|||++++ .+ .+.++|++|++||++|+|+.
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 479999999996 999999999999999999999752 11 46889999999999999985
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.27 E-value=4e-12 Score=73.35 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=47.0
Q ss_pred ccCcchhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q psy4517 14 GDSLYVILELPKT---ATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSD 70 (109)
Q Consensus 14 ~~~~y~iLgv~~~---as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d 70 (109)
..+.|.||||++. ++.++|+++||+|...+|||++++ ......|++|+++|..
T Consensus 3 ~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 3 LDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHHH
Confidence 3567899999998 999999999999999999999876 5667889999998864
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.27 E-value=3.5e-12 Score=93.32 Aligned_cols=65 Identities=40% Similarity=0.640 Sum_probs=55.3
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---HHHHHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN---PEAAEKFKEINRAHSTLSDQTKRNIYDT 79 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 79 (109)
.++|.+||+...++.++|+++|+++++++|||+.+.. ..+.+.|+.|.+||++|+|+.+|..||.
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 4899999999999999999999999999999998753 2478899999999999999999999996
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=92.45 E-value=0.086 Score=41.38 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=35.6
Q ss_pred CccCcchhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Q psy4517 13 SGDSLYVILELPKTATP--EEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHST 67 (109)
Q Consensus 13 ~~~~~y~iLgv~~~as~--~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~ 67 (109)
...+||.+||++-.... .+|+++||++++..+++ .+++..|..|..|
T Consensus 627 ~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 627 NKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp CCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred cCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 34569999999665544 66999999999966543 3678888888765
No 37
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=73.08 E-value=11 Score=21.74 Aligned_cols=48 Identities=25% Similarity=0.227 Sum_probs=34.9
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+.|-++ .+..|..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 12 ~~af~lF-----------~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~eeK~~Y~~ 59 (92)
T 2crj_A 12 VTGYVRF-----------LNERREQIRTRHPDLPF-----PEITKMLGAEWSKLQPAEKQRYLD 59 (92)
T ss_dssp CCHHHHH-----------HHHHHHHHHHHCTTCCH-----HHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred CCHHHHH-----------HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5677666 45566677778898652 577888999999999877655544
No 38
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=71.64 E-value=10 Score=20.83 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+.++..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 16 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~~ 56 (76)
T 1hry_A 16 SRDQRRKMALENPRMRN-----SEISKQLGYQWKMLTEAEKWPFFQ 56 (76)
T ss_dssp HHHHHHHHHHHCSCCSS-----SHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCH-----HHHHHHHHhHHHhCCHHHHHHHHH
Confidence 45566667777898764 356788999999998665544433
No 39
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=71.31 E-value=11 Score=20.83 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=33.5
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+.|-++ ....+..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 11 ~saf~lf-----------~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (77)
T 1hme_A 11 PSAFFLF-----------CSEYRPKIKGEHPGLS-----IGDVAKKLGEMWNNTAADDKQPYEK 58 (77)
T ss_dssp CCTTHHH-----------HHHHHHHHHHHCTTCC-----HHHHHHHHHHHHHHSCGGGSHHHHH
T ss_pred CCHHHHH-----------HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5666666 4455666667788764 2578889999999999766554444
No 40
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=70.34 E-value=11 Score=21.63 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+.+|..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 32 ~~~~r~~~k~~~P~~~~-----~eisk~lg~~Wk~ls~eeK~~Y~~ 72 (90)
T 1wgf_A 32 SEEKRRQLQEERPELSE-----SELTRLLARMWNDLSEKKKAKYKA 72 (90)
T ss_dssp HHHTHHHHHHHCTTSCH-----HHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45566777778898652 577889999999999766555544
No 41
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=65.53 E-value=15 Score=20.90 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+.++..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 29 ~~~~r~~~~~~~P~~~~-----~eisk~lg~~Wk~ls~eeK~~y~~ 69 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKDN-----RAISVILGDRWKKMKNEERRMYTL 69 (87)
T ss_dssp HHHTHHHHHHHCTTSCH-----HHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHhhCCHHHHHHHHH
Confidence 45566777778898642 467788999999998666544443
No 42
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=61.52 E-value=22 Score=20.83 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=35.4
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDT 79 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 79 (109)
.+.|-++ .+..+..++.-+|+... .+..+.|.+.|..|++.++....+.
T Consensus 15 ~saf~lF-----------~~~~r~~ik~~~P~~~~-----~eisk~lg~~Wk~ls~eeK~~Y~~~ 63 (99)
T 1k99_A 15 LTPYFRF-----------FMEKRAKYAKLHPEMSN-----LDLTKILSKKYKELPEKKKMKYIQD 63 (99)
T ss_dssp CCHHHHH-----------HHHHHHHHHTTCTTSCS-----HHHHHHHHHHHHHSCSTTHHHHHHH
T ss_pred CCHHHHH-----------HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5666666 45556667777888763 5788899999999998776655543
No 43
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=60.71 E-value=17 Score=21.38 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
...++..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 29 ~~~~r~~i~~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~ 69 (102)
T 2co9_A 29 FRDTQAAIKGQNPNAT-----FGEVSKIVASMWDGLGEEQKQVYKK 69 (102)
T ss_dssp HHHHHHHHHHHCTTSC-----HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHH
Confidence 4555666777789864 2577888999999998665554444
No 44
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=58.07 E-value=22 Score=19.78 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+.++..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 18 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~~ 58 (83)
T 3f27_D 18 AKDERKRLAQQNPDLHN-----AELSKMLGKSWKALTLAEKRPFVE 58 (83)
T ss_dssp HHHHHHHHHHHCSSSCH-----HHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55667777888998763 578888999999998665554443
No 45
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=57.12 E-value=23 Score=19.71 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=33.8
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+.|-++ .+.++..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 12 ~~af~lf-----------~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~~ 59 (82)
T 1wz6_A 12 MNAFLLF-----------CKRHRSLVRQEHPRLDN-----RGATKILADWWAVLDPKEKQKYTD 59 (82)
T ss_dssp CCHHHHH-----------HHHHHHHHHHHCSSSCT-----THHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHH-----------HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHhhCCHHHHHHHHH
Confidence 5667666 45667777778898764 367788999999998665544433
No 46
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=55.42 E-value=23 Score=19.94 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
...++..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 16 ~~~~r~~~~~~~P~~~~-----~eisk~lg~~Wk~ls~eeK~~y~~ 56 (85)
T 1j46_A 16 SRDQRRKMALENPRMRN-----SEISKQLGYQWKMLTEAEKWPFFQ 56 (85)
T ss_dssp HHHHHHHHHHHSTTSCH-----HHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHHCCHHHHHHHHH
Confidence 45566667777887652 467788999999998655544433
No 47
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=52.85 E-value=25 Score=18.81 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+.++..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLHN-----AELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSCH-----HHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55667777888888763 577888999999998665554443
No 48
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=52.85 E-value=22 Score=21.13 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+.+|..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 41 ~~~~r~~~k~~~P~~~~-----~eisk~lg~~Wk~ls~eeK~~Y~~ 81 (106)
T 4euw_A 41 AQAARRKLADQYPHLHN-----AELSKTLGKLWRLLNESEKRPFVE 81 (106)
T ss_dssp HHHHHHHHHHHCTTSCH-----HHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56677777888897653 477888999999998666554444
No 49
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.92 E-value=33 Score=19.61 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=34.5
Q ss_pred cCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDT 79 (109)
Q Consensus 15 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 79 (109)
.+.|-++ .+..|..++.-||+... .+..+.|.+.|..|++.++....+.
T Consensus 12 ~say~lF-----------~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~eeK~~y~~~ 60 (92)
T 2cs1_A 12 MSASALF-----------VQDHRPQFLIENPKTSL-----EDATLQIEELWKTLSEEEKLKYEEK 60 (92)
T ss_dssp CCHHHHH-----------HHHHHHHHHHHCCSSCH-----HHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCHHHHH-----------HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5666665 45556667777898752 5788899999999987666555443
No 50
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.77 E-value=32 Score=19.38 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+..|..++.-||+...+ ..+..+.|.+.|..|++.++....+
T Consensus 27 ~~~~r~~~k~~~p~~~~~---~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPVN---FAEFSKKCSERWKTMSGKEKSKFDE 69 (86)
T ss_dssp HHHHHHHHHHHCTTSCCC---HHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCc---HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 445566667778987531 2467888999999998665544443
No 51
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.82 E-value=30 Score=19.59 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDT 79 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 79 (109)
-..+|..++.-||+.. + ..+..+.|.+.|..|++.++....+.
T Consensus 17 ~~e~R~~ik~~~P~~~-~---~~eisK~lge~Wk~ls~eeK~~y~~~ 59 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS-D---EADIIKEGMIRFRVLSTEERKVWANK 59 (81)
T ss_dssp HHHHHHHHHHHCTTCC-S---HHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCc-h---hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566777888899875 1 25788899999999997666555553
No 52
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=48.02 E-value=10 Score=24.25 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=27.8
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCC
Q psy4517 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDK 47 (109)
Q Consensus 16 ~~y~iLgv~~~as~~eIk~ayr~l~~~~hPDk 47 (109)
-.+..|.|....+.+|++++-..+..++||+=
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 34777888888999999999999999999974
No 53
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=47.06 E-value=12 Score=22.37 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCC
Q psy4517 26 TATPEEIKKQYRKMALKYHPDKN 48 (109)
Q Consensus 26 ~as~~eIk~ayr~l~~~~hPDk~ 48 (109)
+-++.+|+.+|++|++.+|-...
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~~ 89 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCSS
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc
Confidence 45889999999999998875543
No 54
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=44.48 E-value=37 Score=18.75 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDT 79 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 79 (109)
.+.++..++.-||+... .+..+.|.+.|..|++.++...++.
T Consensus 16 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 16 AKDERRKILQAFPDMHN-----SNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHHTTCSSCCH-----HHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 45566677777887652 5778899999999998776655553
No 55
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=42.27 E-value=34 Score=19.03 Aligned_cols=43 Identities=28% Similarity=0.267 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
....|..++.-||+...+. .+..+.|.+.|..|++.++....+
T Consensus 19 ~~~~r~~~~~~~p~~~~~~---~eisk~lg~~Wk~ls~~eK~~y~~ 61 (83)
T 1aab_A 19 VQTSREEHKKKHPDASVNF---SEFSKKCSERWKTMSAKEKGKFED 61 (83)
T ss_dssp HHHHHHHHTTSCTTTCCCS---SSSHHHHHHHHTTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcH---HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4455666677788864210 246778999999998776555444
No 56
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=40.98 E-value=43 Score=18.10 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+.+|..++.-||+... .+..+.|.+.|..|++ |..|.
T Consensus 15 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~---K~~y~ 52 (73)
T 3nm9_A 15 LNSARESIKRENPGIKV-----TEVAKRGGELWRAMKD---KSEWE 52 (73)
T ss_dssp HHHHHHHHHHHSSSCCH-----HHHHHHHHHHHHHCSC---CHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHcCCc---hHHHH
Confidence 45566777778898753 5788899999999987 66664
No 57
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=39.84 E-value=51 Score=18.60 Aligned_cols=54 Identities=11% Similarity=0.284 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhcC-chhHHHhhhh
Q psy4517 26 TATPEEIKKQYRKMALKYHPDKNPNN--PEAAEKFKEINRAHSTLSD-QTKRNIYDTY 80 (109)
Q Consensus 26 ~as~~eIk~ayr~l~~~~hPDk~~~~--~~~~~~f~~i~~Ay~~L~d-~~~R~~Yd~~ 80 (109)
..-...++..|+.+.+...|...... .++...|.... +|..+.+ ..++.+|+.|
T Consensus 5 ~~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeY 61 (77)
T 2cqn_A 5 SSGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDF 61 (77)
T ss_dssp CCSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHH
Confidence 34456788999999998877555433 34445454444 7998876 4666677764
No 58
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.59 E-value=78 Score=20.12 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
...++..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 113 ~~~~r~~~~~~~p~~~~-----~ei~k~lg~~Wk~ls~~eK~~y~~ 153 (173)
T 2yrq_A 113 CSEYRPKIKGEHPGLSI-----GDVAKKLGEMWNNTAADDKQPYEK 153 (173)
T ss_dssp HHHHHHHHHHHCSSSCH-----HHHHHHHHHHHHHSCGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45556666777888652 577889999999999766655444
No 59
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=36.90 E-value=51 Score=17.81 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcC-ch-hHHHhhhh
Q psy4517 30 EEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSD-QT-KRNIYDTY 80 (109)
Q Consensus 30 ~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d-~~-~R~~Yd~~ 80 (109)
+|..++|.+|.+...=|..-+=+.+...+-.-..-|.+|.| |. ++..|+.|
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 56788999998887655544312222222122457899996 65 55677754
No 60
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=35.22 E-value=56 Score=17.76 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+.++..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~~eK~~y~~ 54 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMHN-----AEISKRLGKRWKLLKDSDKIPFIQ 54 (79)
T ss_dssp HHHHHHHHHTTSTTSCH-----HHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCH-----HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45666777777887653 478888999999998665544433
No 61
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=32.66 E-value=69 Score=18.01 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517 26 TATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDT 79 (109)
Q Consensus 26 ~as~~eIk~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 79 (109)
+.|...+-+.|-++... +|+..-+ |++|-+.|.=..+|+.||-
T Consensus 9 ~~SL~~lt~kFi~l~~~-~~~~~i~----------l~~aa~~L~v~~kRRiYDI 51 (76)
T 1cf7_A 9 EKSLGLLTTKFVSLLQE-AKDGVLD----------LKLAADTLAVRQKRRIYDI 51 (76)
T ss_dssp TTCHHHHHHHHHHHHHH-SSTTEEE----------HHHHHHHTTTCCTHHHHHH
T ss_pred cCcHHHHHHHHHHHHHh-CCCCcCc----------HHHHHHHhCCccceehhhH
Confidence 55788888888888765 3544322 6777777764479999995
No 62
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=38.68 E-value=9.4 Score=21.55 Aligned_cols=22 Identities=9% Similarity=0.468 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q psy4517 26 TATPEEIKKQYRKMALKYHPDK 47 (109)
Q Consensus 26 ~as~~eIk~ayr~l~~~~hPDk 47 (109)
+-|+++|+.+|++|++.+|-.+
T Consensus 47 nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 47 DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 4577888888888888776543
No 63
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=31.80 E-value=41 Score=18.83 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.0
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q psy4517 20 ILELPKTATPEEIKKQYRKMA 40 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l~ 40 (109)
|=||+.+++.++|++.|.+..
T Consensus 6 v~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp EETCCSSCCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhC
Confidence 348999999999999998874
No 64
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=30.75 E-value=48 Score=18.17 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+.++..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~eeK~~y~~ 54 (80)
T 1gt0_D 14 SRGQRRKMAQENPKMHN-----SEISKRLGAEWKLLSETEKRPFID 54 (80)
T ss_dssp HHHHHHHHHTTSTTSCH-----HHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44556667777887542 567888999999998665554444
No 65
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=30.30 E-value=1e+02 Score=19.20 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
...++..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 100 ~~~~r~~~~~~~p~~~~-----~ei~k~lg~~Wk~ls~~eK~~y~~ 140 (159)
T 2gzk_A 100 CSEYRPKIKGEHPGLSI-----GDVAKKLGEMWNNTAADDKQPYEK 140 (159)
T ss_dssp HHHHHHHHHHHCSCCCH-----HHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hHhhHHHHHHhCCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45566666777897642 577889999999998665544433
No 66
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=28.79 E-value=73 Score=17.10 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
.+..|..++.-||+... .+..+.|.+.|..| ..|..|.
T Consensus 15 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~l---~eK~~y~ 52 (73)
T 1wxl_A 15 LNDTRESIKRENPGIKV-----TEIAKKGGEMWKEL---KDKSKWE 52 (73)
T ss_dssp HHHHHHHHHHHSTTCCH-----HHHHHHHHHHHHTC---TTHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHhh---HhhHHHH
Confidence 44556667777898652 57788899999999 3445553
No 67
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=28.54 E-value=65 Score=17.96 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
...++..++.-||+... .+..+.|.+.|..|++.++....+
T Consensus 14 ~~~~r~~~~~~~P~~~~-----~eisk~lg~~Wk~ls~eeK~~y~~ 54 (86)
T 2lef_A 14 MKEMRANVVAESTLKES-----AAINQILGRRWHALSREEQAKYYE 54 (86)
T ss_dssp HHHHHHHHHHHSSCCCH-----HHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44556667777888642 567888999999998655544433
No 68
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=28.13 E-value=73 Score=16.86 Aligned_cols=42 Identities=29% Similarity=0.304 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 34 KQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 34 ~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
+..|..++.-||+...+ ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~r~~~~~~~p~~~~~---~~eisk~lg~~Wk~ls~~eK~~y~~ 55 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVN---FSEFSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHHCTTCCCC---HHHHHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHHCCCCCCc---HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 34455566778986531 2467888999999999776655444
No 69
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=25.92 E-value=20 Score=20.83 Aligned_cols=42 Identities=26% Similarity=0.226 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 34 KQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 34 ~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
..++..++.-||+...+. .+..+.|.+.|..|++.++....+
T Consensus 35 ~~~r~~~k~~~p~~~~~~---~eisk~lg~~Wk~ls~eeK~~Y~~ 76 (97)
T 2lhj_A 35 KEKRVEIIAENPEIAKDV---AAIGKMIGAAWNALSDEEKKPYER 76 (97)
T ss_dssp HGGGGGHHHHCTTSTTCS---SHHHHHHHHTSSSSCSTTTSSSSH
T ss_pred HHHHHHHHHHCCCCCccH---HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 334455555688865111 367788899999998766544333
No 70
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=25.70 E-value=43 Score=19.39 Aligned_cols=21 Identities=10% Similarity=0.127 Sum_probs=17.5
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q psy4517 20 ILELPKTATPEEIKKQYRKMA 40 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l~ 40 (109)
++-|++.|+..|||+|-.++-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 567889999999999988763
No 71
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=24.90 E-value=67 Score=16.67 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=16.4
Q ss_pred cCCCCCCCHHHHHHHHHHH
Q psy4517 21 LELPKTATPEEIKKQYRKM 39 (109)
Q Consensus 21 Lgv~~~as~~eIk~ayr~l 39 (109)
=||+.+++.++|++.+.+.
T Consensus 5 ~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 4788899999999999876
No 72
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.60 E-value=93 Score=17.60 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=17.6
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q psy4517 20 ILELPKTATPEEIKKQYRKM 39 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l 39 (109)
|=+|+.+++.++|+..|.+.
T Consensus 27 V~nLp~~~t~~~l~~~F~~~ 46 (109)
T 1x4a_A 27 VGNLPPDIRTKDIEDVFYKY 46 (109)
T ss_dssp EESCCTTCCHHHHHHHHGGG
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 66899999999999988875
No 73
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=24.22 E-value=47 Score=19.56 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=15.8
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q psy4517 20 ILELPKTATPEEIKKQYRKM 39 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l 39 (109)
++-|++.|+..|||+|-.++
T Consensus 31 ~F~V~~~AnK~eIK~AVE~l 50 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKL 50 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 35678888999998887765
No 74
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.75 E-value=49 Score=19.19 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.6
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q psy4517 20 ILELPKTATPEEIKKQYRKM 39 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l 39 (109)
++-|++.|+..|||+|-.++
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~l 46 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEI 46 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHH
Confidence 36688899999999998776
No 75
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=23.06 E-value=1.1e+02 Score=17.35 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCC
Q psy4517 29 PEEIKKQYRKMALKYHPDKNP 49 (109)
Q Consensus 29 ~~eIk~ayr~l~~~~hPDk~~ 49 (109)
..+|+++|+. +..|..+
T Consensus 35 ~~el~~~F~~----~D~d~~G 51 (100)
T 2lv7_A 35 LEEIREAFKV----FDRDGNG 51 (100)
T ss_dssp HHHHHHHHHH----TCSSCSS
T ss_pred HHHHHHHHHH----HcCCCCC
Confidence 3456666665 4555543
No 76
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=23.03 E-value=50 Score=19.50 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=17.8
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q psy4517 20 ILELPKTATPEEIKKQYRKMA 40 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l~ 40 (109)
++-|++.|+..|||+|-.++-
T Consensus 26 ~F~V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHh
Confidence 677889999999999987763
No 77
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=22.76 E-value=52 Score=19.30 Aligned_cols=20 Identities=25% Similarity=0.195 Sum_probs=16.8
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q psy4517 20 ILELPKTATPEEIKKQYRKM 39 (109)
Q Consensus 20 iLgv~~~as~~eIk~ayr~l 39 (109)
++-|++.|+..|||+|-.++
T Consensus 25 ~F~V~~~AnK~qIK~aVe~l 44 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETA 44 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46788899999999998776
No 78
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=22.17 E-value=1.8e+02 Score=19.33 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
-+..+..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 21 ~~~~r~~~k~~~P~~~-----~~eisk~lge~Wk~Ls~~EK~~y~~ 61 (214)
T 3tq6_A 21 SKEQLPIFKAQNPDAK-----TTELIRRIAQRWRELPDSKKKIYQD 61 (214)
T ss_dssp HHHHHHHHHHHCTTSC-----HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC-----HHHHHHHHHHHHHccCHHhhhHHHH
Confidence 4455666777789876 3677888899999998766655444
No 79
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=21.68 E-value=1e+02 Score=17.62 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCchhHHHhhhhC
Q psy4517 51 NPEAAEKFKEINRAHSTLSDQTKRNIYDTYG 81 (109)
Q Consensus 51 ~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 81 (109)
++++.+....+.+.|. ..+.|..||+..
T Consensus 48 ~pqaae~ln~liegyt---~geerklydsal 75 (95)
T 1xou_B 48 DPQAAEKLNKLIEGYT---YGEERKLYDSAL 75 (95)
T ss_dssp CHHHHHHHHHHHHHHH---HSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhc---chhHHHHHHHHH
Confidence 3677788888888876 467899999743
No 80
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=21.62 E-value=96 Score=17.33 Aligned_cols=42 Identities=12% Similarity=0.248 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchh
Q psy4517 32 IKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTK 73 (109)
Q Consensus 32 Ik~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~ 73 (109)
+..-||..+...-.|+...+.....+.+-+.+||+-+.....
T Consensus 30 mNaYYrsVvstlvqDqltKNAvvlkRiqHLdEAY~KVk~e~s 71 (80)
T 2gsv_A 30 MNSYYRSVVSTLVQDQLTKNAVVLKRIQHLDEAYNKVKRGES 71 (80)
T ss_dssp HHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 556677777777788877666777889999999987654433
No 81
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=21.49 E-value=76 Score=18.70 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q psy4517 26 TATPEEIKKQYRKMALKYHPDK 47 (109)
Q Consensus 26 ~as~~eIk~ayr~l~~~~hPDk 47 (109)
.=|.++||.+|..++++..-.+
T Consensus 66 ~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 66 KRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 4599999999999988764333
No 82
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=20.99 E-value=19 Score=20.74 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=24.0
Q ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhhh
Q psy4517 37 RKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDT 79 (109)
Q Consensus 37 r~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 79 (109)
+..++.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 36 r~~~~~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~y~~~ 73 (93)
T 1cg7_A 36 RDIVRSENPDIT-----FGQVGKKLGEKWKALTPEEKQPYEAK 73 (93)
T ss_dssp TSTTTTTCTTSC-----HHHHTTTHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 333344456543 35778889999999986665554443
No 83
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=20.02 E-value=1.4e+02 Score=20.19 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCchhHHHhh
Q psy4517 33 KKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYD 78 (109)
Q Consensus 33 k~ayr~l~~~~hPDk~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 78 (109)
-+..|..++.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 53 ~~e~r~~~k~~~P~~~-----~~eisk~lge~Wk~Ls~~EK~~y~~ 93 (238)
T 3tmm_A 53 SKEQLPIFKAQNPDAK-----TTELIRRIAQRWRELPDSKKKIYQD 93 (238)
T ss_dssp HHHHHHHHHHHSTTSC-----HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4455666677789776 3677888999999998766655444
Done!