RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4517
(109 letters)
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 121 bits (305), Expect = 2e-34
Identities = 40/70 (57%), Positives = 47/70 (67%)
Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRN 75
Y IL + K A+ EEIKK YRK+A KYHPD+NP + EA EKFKEIN A+ LSD KR
Sbjct: 5 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64
Query: 76 IYDTYGSLGL 85
YD +G G
Sbjct: 65 AYDQFGHAGF 74
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 113 bits (285), Expect = 1e-31
Identities = 36/64 (56%), Positives = 46/64 (71%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + + A+ +EIKK YRK+A+KYHPD+NP + EA EKFKEI A+ LSD KR Y
Sbjct: 7 YEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAY 66
Query: 78 DTYG 81
D YG
Sbjct: 67 DQYG 70
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in
Prosite are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 104 bits (262), Expect = 4e-31
Identities = 41/62 (66%), Positives = 47/62 (75%)
Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI 76
Y IL +P+ A+ EEIKK YRK+ALKYHPDKNP +P A EKFKEIN A+ LSD KR I
Sbjct: 2 YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRAI 61
Query: 77 YD 78
YD
Sbjct: 62 YD 63
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included
by this family. Eukaryotic (mitochondrial and
chloroplast) forms are not included in the scope of
this family.
Length = 354
Score = 110 bits (278), Expect = 1e-30
Identities = 39/68 (57%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL + K A+ EEIKK YRK+A KYHPD+N + EA EKFKEIN A+ LSD KR Y
Sbjct: 3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQY 61
Query: 78 DTYGSLGL 85
D +G G
Sbjct: 62 DQFGHAGF 69
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 102 bits (255), Expect = 4e-27
Identities = 40/69 (57%), Positives = 51/69 (73%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL + KTA+PEEIKK YRK+A+KYHPDKNP + EA ++FKE++ A+ LSD KR Y
Sbjct: 4 YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESY 63
Query: 78 DTYGSLGLY 86
D YG G +
Sbjct: 64 DRYGKDGPF 72
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 100 bits (251), Expect = 9e-27
Identities = 39/68 (57%), Positives = 47/68 (69%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL + + A+ EEIKK YRK+A+KYHPD+NP + EA E FKE A+ LSD KR IY
Sbjct: 7 YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIY 66
Query: 78 DTYGSLGL 85
D YG GL
Sbjct: 67 DQYGHEGL 74
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 93.0 bits (232), Expect = 1e-26
Identities = 37/53 (69%), Positives = 43/53 (81%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSD 70
Y IL +P A+ EEIKK YRK+ALKYHPDKNP++PEA EKFKEIN A+ LSD
Sbjct: 3 YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 99.5 bits (248), Expect = 3e-26
Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL + + AT EEIKK YR++A KYHPD N NPEA EKFKEIN A+ LSD KR +Y
Sbjct: 6 YEILGVSRNATQEEIKKAYRRLARKYHPDFNK-NPEAEEKFKEINEAYQVLSDPEKRKLY 64
Query: 78 DTYGSLGLYVA--EQFGEE 94
D +G + +Q G+E
Sbjct: 65 DQFGHAAFSGSGQQQQGQE 83
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 94.9 bits (236), Expect = 2e-24
Identities = 37/68 (54%), Positives = 49/68 (72%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + ++A +EIKK YRK+ALKYHPDKNP+N EA E FKE+N A+ LS+ KR Y
Sbjct: 6 YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRY 65
Query: 78 DTYGSLGL 85
D +G G+
Sbjct: 66 DQFGHAGV 73
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 94.5 bits (235), Expect = 2e-24
Identities = 37/65 (56%), Positives = 47/65 (72%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L L K A+ +EIKK +RK+A+KYHPDKN N EA EKFKEIN A+ LSD K+ Y
Sbjct: 7 YEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQY 66
Query: 78 DTYGS 82
D +G+
Sbjct: 67 DQFGT 71
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 86.9 bits (216), Expect = 3e-24
Identities = 36/59 (61%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP-EAAEKFKEINRAHSTLSDQTK 73
Y IL +P+ A+ +EIKK YRK+ALKYHPDKNP + EA EKFKEIN A+ LSD K
Sbjct: 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 92.6 bits (230), Expect = 1e-23
Identities = 37/65 (56%), Positives = 45/65 (69%)
Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI 76
Y IL + + AT EEIKK YR++A KYHPD NP + EA +KFKEIN A+ LSD KR
Sbjct: 7 YYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQ 66
Query: 77 YDTYG 81
YD +G
Sbjct: 67 YDQFG 71
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 90.7 bits (225), Expect = 5e-23
Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 10 MSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLS 69
M+T+ D Y IL L K A+ E+IKK YRK+A+KYHPDKN P+A EKFKEI+ A++ LS
Sbjct: 1 MATTRD-YYEILGLSKDASVEDIKKAYRKLAMKYHPDKN-KEPDAEEKFKEISEAYAVLS 58
Query: 70 DQTKRNIYDTYGSLGLYVAEQFGEENV 96
D KR YD +G G + Q+ E++
Sbjct: 59 DAEKRAQYDRFGHAG--IDNQYSAEDI 83
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 90.2 bits (224), Expect = 8e-23
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + + A+ +EIKK YRK+AL+YHPD+NP+NPEA +KFKE A+ L D KR Y
Sbjct: 7 YEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARY 66
Query: 78 DTYGSLGL 85
D +G G+
Sbjct: 67 DRFGHAGV 74
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 90.3 bits (224), Expect = 9e-23
Identities = 40/75 (53%), Positives = 50/75 (66%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + KTAT +EIKK YRK A++YHPDKNP + EA EKFKE A+ LSD KR+ Y
Sbjct: 8 YEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRY 67
Query: 78 DTYGSLGLYVAEQFG 92
D +G G+ A G
Sbjct: 68 DQFGHAGVGGAAGGG 82
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 88.1 bits (218), Expect = 2e-22
Identities = 39/65 (60%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL +PK A+ +EIKK ++K+A KYHPD N +P A EKFKEIN A++ LSD KR IY
Sbjct: 7 YAILGVPKNASQDEIKKAFKKLARKYHPDVN-KSPGAEEKFKEINEAYTVLSDPEKRRIY 65
Query: 78 DTYGS 82
DTYG+
Sbjct: 66 DTYGT 70
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 87.0 bits (216), Expect = 1e-21
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + + A+ EIK+ YRK+A + HPD NP + EA EKFKEI+ A+ LSD KR I
Sbjct: 6 YGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIV 64
Query: 78 DTYG 81
D G
Sbjct: 65 DLGG 68
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 87.2 bits (216), Expect = 1e-21
Identities = 42/82 (51%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 4 PPPRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINR 63
RRK + LY +L L K T EIKK YRK+A+K+HPDK + EKFKEI+R
Sbjct: 17 DGGRRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISR 72
Query: 64 AHSTLSDQTKRNIYDTYGSLGL 85
A+ LSD KR IYD YG GL
Sbjct: 73 AYEVLSDPEKRKIYDEYGEEGL 94
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 86.3 bits (214), Expect = 2e-21
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI 76
Y L + K A+ +EIKK YRK++ KYHPD N P A EK+KE+ A+ TLSD KR
Sbjct: 6 YYDRLGVSKDASQDEIKKAYRKLSKKYHPDIN-KEPGAEEKYKEVQEAYETLSDPQKRAA 64
Query: 77 YDTYGSLG 84
YD YG+ G
Sbjct: 65 YDQYGAAG 72
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 84.9 bits (210), Expect = 8e-21
Identities = 35/66 (53%), Positives = 45/66 (68%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L +PK AT EIKK YRK+A +YHPD N + +A E+FKEI+ A+ LSD+ KR Y
Sbjct: 12 YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEY 71
Query: 78 DTYGSL 83
D SL
Sbjct: 72 DEARSL 77
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 83.6 bits (207), Expect = 2e-20
Identities = 31/61 (50%), Positives = 39/61 (63%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y L + A+ EEIKK YRK+A + HPD NP +P A E+FK ++ AH LSD KR Y
Sbjct: 12 YKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEY 71
Query: 78 D 78
D
Sbjct: 72 D 72
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 83.6 bits (206), Expect = 2e-20
Identities = 41/70 (58%), Positives = 49/70 (70%)
Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRN 75
S Y ILE+ K + E IKK YRK+ALKYHPD+N + EA EKFK IN A+ LSD+ KR
Sbjct: 4 SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63
Query: 76 IYDTYGSLGL 85
+YD YG GL
Sbjct: 64 LYDRYGKKGL 73
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 83.4 bits (206), Expect = 2e-20
Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + +TA+ +EIK YRK+ALKYHPD+N AAEKF +IN A++ LSD KR Y
Sbjct: 5 YELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHY 63
Query: 78 DTYGS 82
D +G+
Sbjct: 64 DRFGT 68
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 82.0 bits (203), Expect = 8e-20
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL + + A +E+K+ YR++A KYHPD N P A ++FKEINRA+ LSD R Y
Sbjct: 6 YEILGVSRDADKDELKRAYRRLARKYHPDVN-KEPGAEDRFKEINRAYEVLSDPETRARY 64
Query: 78 DTYGSLGL 85
D +G G+
Sbjct: 65 DQFGEAGV 72
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 79.8 bits (197), Expect = 5e-19
Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + K+A+ +EIKK YRK++ KYHPD N A EKFKEI+ A+ LSD KR Y
Sbjct: 7 YEVLGVSKSASKDEIKKAYRKLSKKYHPDIN-KEEGADEKFKEISEAYEVLSDDQKRAQY 65
Query: 78 DTYGSLG 84
D +G G
Sbjct: 66 DQFGHAG 72
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 79.9 bits (197), Expect = 5e-19
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + + A +EIKK YRK+A KYHPD + A EKFKEI+ A++ LSD KR Y
Sbjct: 8 YEVLGVDRNADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVLSDDEKRQRY 66
Query: 78 DTYGSLGLYVAEQFGEE----NVN 97
D +G G+ + F +E N+N
Sbjct: 67 DQFGHAGM---DGFSQEDIFNNIN 87
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 79.6 bits (196), Expect = 6e-19
Identities = 38/73 (52%), Positives = 46/73 (63%)
Query: 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQT 72
S S Y IL + K+A EEIK YRK+A+KYHPDKN N E+ EKFKE A+ L D
Sbjct: 2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPK 61
Query: 73 KRNIYDTYGSLGL 85
KR YD +G G+
Sbjct: 62 KRQAYDQFGKAGV 74
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 78.7 bits (194), Expect = 1e-18
Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNI 76
Y IL + + AT EEIK+ Y+++ ++HPD++P N EA +KFKEI A+ LSD KR +
Sbjct: 7 YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAM 66
Query: 77 YDTYGSLGLYVAEQ 90
YD +G YV EQ
Sbjct: 67 YDRFG----YVGEQ 76
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 76.8 bits (188), Expect = 2e-18
Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 16 SLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP-EAAEKFKEINRAHSTLSDQTKR 74
Y IL +P A+ EEIKK YRK+ALKYHPD+NP +P A EKFKEIN A+ LSD +R
Sbjct: 7 DYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERR 66
Query: 75 NIYDTYGSLGLYVAEQFGEE 94
YD G+ + + + E
Sbjct: 67 AEYDKIGADNYFPGKSYRES 86
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 76.5 bits (188), Expect = 8e-18
Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRNI 76
Y IL + + A+ E+IKK +R++A K+HPD +P N EA EKFKEI+ A+ LSD KR
Sbjct: 6 YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQ 65
Query: 77 YDTYGS 82
YD G+
Sbjct: 66 YDQTGT 71
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 76.6 bits (188), Expect = 8e-18
Identities = 35/64 (54%), Positives = 41/64 (64%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL L K A+ +EIKK YRK+A+KYHPDKN N EA FKE A+ L D KR Y
Sbjct: 6 YEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQY 65
Query: 78 DTYG 81
D +G
Sbjct: 66 DRFG 69
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 70.7 bits (173), Expect = 9e-16
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + KTA+ +EI++ YRK+A +YHPD N +P+A +K EIN A L D+ KR Y
Sbjct: 7 YEVLGVSKTASEQEIRQAYRKLAKQYHPDLN-KSPDAHDKMVEINEAADVLLDKDKRKQY 65
Query: 78 DTYG 81
D +G
Sbjct: 66 DQFG 69
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 67.3 bits (164), Expect = 1e-14
Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + + A+ +E+KK YRK+A KYHPD N P+A +KFKE+ A+ TLSD K+ Y
Sbjct: 7 YEVLGVDRNASVDEVKKAYRKLARKYHPDVN-KAPDAEDKFKEVKEAYDTLSDPQKKAHY 65
Query: 78 DTYG 81
D +G
Sbjct: 66 DQFG 69
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 65.0 bits (158), Expect = 9e-14
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL + KTA+ ++KK Y K+A +YHPD + +A +KFKEIN A+ L D+ KR Y
Sbjct: 6 YQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRAAY 64
Query: 78 DTYG 81
D +G
Sbjct: 65 DRFG 68
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 64.5 bits (156), Expect = 2e-13
Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + + A +EIKK +RK+A KYHPD+N P+AA F EIN A+ LS+ KR Y
Sbjct: 5 YEVLGIDRDADEQEIKKAFRKLAKKYHPDRN-KAPDAASIFAEINEANDVLSNPKKRANY 63
Query: 78 DTYGSLGL 85
D YG G+
Sbjct: 64 DKYGHDGV 71
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 57.1 bits (138), Expect = 5e-11
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y I+ + T + IK YR++A KYHPD + P+A +FKE+ A LSD+ +R Y
Sbjct: 7 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEPDAEARFKEVAEAWEVLSDEQRRAEY 65
Query: 78 D 78
D
Sbjct: 66 D 66
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 54.6 bits (131), Expect = 6e-10
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPN-----NPEAAEKFKEINRAHSTLSDQT 72
Y IL + + + +IKK+YR +++K+HPDK P E EK+K I +A+ L+D+
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160
Query: 73 KRNIYDTYGS 82
+R Y YG+
Sbjct: 161 RRENYLNYGT 170
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 45.4 bits (107), Expect = 9e-07
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 17 LYVILELPK---TATPEEIKKQYRKMALKYHPDKNP--NNPEAAEKFKEINRAHSTLSDQ 71
LY +L L K A P +I K ++K KYHPDK N E FK I +A L D+
Sbjct: 45 LYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDR 104
Query: 72 TKRNIYDT 79
R YD+
Sbjct: 105 KLRLQYDS 112
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 40.4 bits (95), Expect = 3e-05
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 21 LELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINR 63
L LP++A ++K Y + L++HPDK + EK KE+N
Sbjct: 11 LGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDE----EKMKELNT 51
>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional.
Length = 166
Score = 39.9 bits (93), Expect = 4e-05
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 20 ILELPKTATP--EEIKKQYRKMALKYHPDKNPNNPEAAEKF---KEINRAHSTLSDQTKR 74
+L LP+ + ++KQY M +KYHPDK E + E+N A+STL D KR
Sbjct: 7 LLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKR 66
Query: 75 NIY 77
Y
Sbjct: 67 AEY 69
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 40.2 bits (95), Expect = 5e-05
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 11 STSGDSL---YVILELPKTATPEEIKKQYRKMALKYHPDK 47
+ G +L Y +L + ++ +EIK+ YRK+ ++HPDK
Sbjct: 193 AQRGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDK 232
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 40.2 bits (93), Expect = 6e-05
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL + A +EI ++Y K+A Y+P K N E KFK+IN A+ L D K+ +Y
Sbjct: 576 YDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMY 634
Query: 78 DTYGSLGLYVAEQFGEENVNTYFMVTS 104
+ +G G+ + + + ++++ S
Sbjct: 635 NKFGYDGI---KGVNFIHPSIFYLLAS 658
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 39.2 bits (92), Expect = 1e-04
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 21 LELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINR 63
L LP A ++K Y + +YHPDK + EK K +N
Sbjct: 17 LGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDE----EKMKRLNS 57
>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This
model describes the small subunit, Hsc20 (20K heat
shock cognate protein) of a pair of proteins
Hsc66-Hsc20, related to the DnaK-DnaJ heat shock
proteins, which also serve as molecular chaperones.
Hsc20, unlike DnaJ, appears not to have chaperone
activity on its own, but to act solely as a regulatory
subunit for Hsc66 (i.e., to be a co-chaperone). The
gene for Hsc20 in E. coli, hscB, is not induced by heat
shock [Protein fate, Protein folding and
stabilization].
Length = 155
Score = 37.9 bits (88), Expect = 2e-04
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 32 IKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLSDQTKRNIY 77
++K+YR++ +YHPD + E A+++ +N+A+ TL D +R Y
Sbjct: 8 LRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56
>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 174
Score = 36.6 bits (85), Expect = 8e-04
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 19 VILELPKTATP--EEIKKQYRKMALKYHPDKNPNNPEAA-----EKFKEINRAHSTLSDQ 71
V+ LP+ + +K QYR++ YHPD+ EA ++ E+N A+ TL D
Sbjct: 5 VLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDP 64
Query: 72 TKRNIY 77
R Y
Sbjct: 65 LLRAEY 70
Score = 35.8 bits (83), Expect = 0.001
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 7 RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDK---NPNNPE----AAEKFK 59
+ + +L + A + IKK YRK+ + HPDK E EK +
Sbjct: 105 EAREQLDREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQ 164
Query: 60 EINRA 64
EI A
Sbjct: 165 EIQEA 169
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
Length = 116
Score = 33.7 bits (77), Expect = 0.005
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 8 RKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPD 46
MS S Y IL + TA+ E I++ ++++ L+ HPD
Sbjct: 60 NPMSKS--EAYKILNISPTASKERIREAHKQLMLRNHPD 96
>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional.
Length = 173
Score = 32.9 bits (75), Expect = 0.013
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 30 EEIKKQYRKMALKYHPDKNPNNPE-----AAEKFKEINRAHSTLSDQTKRNIY 77
+++ +YR++A + HPD+ + PE A E+ +N A+ TL +R Y
Sbjct: 21 DQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARY 73
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 32.2 bits (74), Expect = 0.028
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 8 RKMSTSGDSLYVILELPKTATPEEIKKQYRKMA-----LKYHPDKNPNNPEAAEKFKEIN 62
KMS S + + L P+ I+K+ +K A L + PE F EI
Sbjct: 197 GKMSKSDPNSAIFL----LDDPKTIRKKIKKAATDGPTLIEYRK--GGKPEVCNLF-EIY 249
Query: 63 RAHSTLSDQTKRNIYDTYGSLGL 85
A D + I Y L
Sbjct: 250 SAFF--EDDSILEIEAEYRGGEL 270
>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
Length = 171
Score = 31.0 bits (71), Expect = 0.060
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 35 QYRKMALKYHPDKNPNNPE-----AAEKFKEINRAHSTLSDQTKR 74
+Y+++ ++HPDK N E A ++ IN A+ TL KR
Sbjct: 23 RYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKR 67
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.
Length = 333
Score = 31.2 bits (72), Expect = 0.072
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 6 PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKM------ALKYHPDKNPNNPEAAEKFK 59
P +KMS S + + L P+ I K+ +K + D PN PE +
Sbjct: 190 PTKKMSKSDPNDNNTINL--LDDPKTIAKKIKKAVTDSERLREIRYD-LPNKPEVSNLL- 245
Query: 60 EINRAHSTLSDQTKRNIYDTYGSLGL 85
I +S LS ++ + Y + G
Sbjct: 246 TI---YSALSGESIEELEAEYEAGGK 268
>gnl|CDD|176072 cd08690, C2_Freud-1, C2 domain found in 5' repressor element
under dual repression binding protein-1 (Freud-1).
Freud-1 is a novel calcium-regulated repressor that
negatively regulates basal 5-HT1A receptor expression
in neurons. It may also play a role in the altered
regulation of 5-HT1A receptors associated with anxiety
or major depression. Freud-1 contains two DM-14 basic
repeats, a helix-loop-helix DNA binding domain, and a
C2 domain. The Freud-1 C2 domain is thought to be
calcium insensitive and it lacks several acidic
residues that mediate calcium binding of the PKC C2
domain. In addition, it contains a poly-basic insert
that is not present in calcium-dependent C2 domains and
may function as a nuclear localization signal. C2
domains fold into an 8-standed beta-sandwich that can
adopt 2 structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind
phospholipids, inositol polyphosphates, and
intracellular proteins. Most C2 domain proteins are
either signal transduction enzymes that contain a
single C2 domain, such as protein kinase C, or membrane
trafficking proteins which contain at least two C2
domains, such as synaptotagmin 1. However, there are a
few exceptions to this including RIM isoforms and some
splice variants of piccolo/aczonin and intersectin
which only have a single C2 domain. C2 domains with a
calcium binding region have negatively charged
residues, primarily aspartates, that serve as ligands
for calcium ions. This cd contains the first C2
repeat, C2A, and has a type-II topology.
Length = 155
Score = 29.6 bits (67), Expect = 0.22
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 47 KNPNNPEAAEKFK-EINRAHSTLSDQTKRN 75
K+ N+PE E FK INR H + KR+
Sbjct: 49 KDTNSPEYNESFKLNINRKHRSFQRVFKRH 78
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model [Protein synthesis, tRNA
aminoacylation].
Length = 327
Score = 29.2 bits (66), Expect = 0.30
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 7 RRKMSTSGDSLYVILELPKTATPEEIKKQYRKMAL------KYHPDKNPNNPE 53
+KMS S + + L T TP++IKK+ RK A + + P P
Sbjct: 189 GKKMSKSDPNSAIFL----TDTPKQIKKKIRKAATDGGRVTLFEHREKPGVPN 237
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA
synthetase. Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. TrpRS is a homodimer which
attaches Tyr to the appropriate tRNA. TrpRS is a class I
tRNA synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains class I characteristic
HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 280
Score = 29.1 bits (66), Expect = 0.38
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 6 PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMAL----KYHPDKNPNNPE 53
P +KMS S + + L T +P+EIKK+ K A H
Sbjct: 188 PSKKMSKSDPNNAIFL----TDSPKEIKKKIMKAATDGGRTEHRRDGGGPGV 235
>gnl|CDD|178174 PLN02560, PLN02560, enoyl-CoA reductase.
Length = 308
Score = 27.4 bits (61), Expect = 1.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 21 LELPKTATPEEIKKQYRKMALKYHPDK 47
LE+P +AT ++KK K KY+P +
Sbjct: 18 LEVPDSATVADLKKAIHKRKKKYYPSR 44
>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional.
Length = 176
Score = 27.3 bits (61), Expect = 1.4
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 36 YRKMALKYHPDKNPNNPEAAEKFK-----EINRAHSTLSDQTKRNIY 77
YR + + HPD+ +A ++ N A+ TL D KR Y
Sbjct: 29 YRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARY 75
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 27.3 bits (61), Expect = 1.9
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 20 ILELPKTATPE-EIKKQYRKMALKYHPDK-NPNNPEAAEKFK------EINRAHSTLSDQ 71
IL+L K E ++ Y+ K +P E A + L +
Sbjct: 65 ILDLIKELGLEDKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLSSEAGLARA-LQEF 123
Query: 72 TKRNIYDTYG--SLGLYVAEQFGEENVNTYFM 101
+ ++ S+G ++ +FGEE V +
Sbjct: 124 IRPKSWEPKQDISVGEFIRRRFGEEVVERFIE 155
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional.
Length = 332
Score = 27.0 bits (60), Expect = 2.4
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 8 RKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKF 58
RKMS S ++ +P A E+++K K+ P +PE + F
Sbjct: 201 RKMSKSYGNV-----IPLFAEQEKLRKLIFKIKTDSSLPNEPKDPETSALF 246
>gnl|CDD|235828 PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase;
Validated.
Length = 953
Score = 26.9 bits (60), Expect = 2.6
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 23 LPKTATPEEIKKQYR---KMALK 42
+P+ AT E+I++ Y K+ LK
Sbjct: 662 MPEDATVEDIEEVYLEGWKLGLK 684
>gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase;
Validated.
Length = 388
Score = 26.6 bits (59), Expect = 2.7
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 23 LPK-TATPEEIKKQYRKMALKYHPDKNPNNPEAA 55
LP P E+ Q R M L Y P+NP A
Sbjct: 152 LPVFADIPTEVLAQARLMVLSY-----PHNPTTA 180
>gnl|CDD|182885 PRK10991, fucI, L-fucose isomerase; Provisional.
Length = 588
Score = 26.5 bits (59), Expect = 3.1
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 88 AEQFGEENVNTYFMVTSTWC 107
E+F ENV VT WC
Sbjct: 70 EEKFSSENVGLTITVTPCWC 89
>gnl|CDD|130161 TIGR01089, fucI, L-fucose isomerase. This enzyme catalyzes the
first step in fucose metabolism, and has been
characterized in Escherichia coli and Bacteroides
thetaiotaomicron [Energy metabolism, Sugars].
Length = 587
Score = 26.4 bits (58), Expect = 3.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 88 AEQFGEENVNTYFMVTSTWC 107
AE+F ENV VT WC
Sbjct: 69 AEKFSRENVGLTITVTPCWC 88
>gnl|CDD|218845 pfam05991, NYN_YacP, YacP-like NYN domain. This family consists of
bacterial proteins related to YacP. This family is
uncharacterized functionally, but it has been suggested
that these proteins are nucleases due to them containing
a NYN domain. NYN (for N4BP1, YacP-like Nuclease)
domains were discovered by Anantharaman and Aravind.
Based on gene neighborhoods it was suggested that the
bacterial YacP proteins interact with the Ribonuclease
III and TrmH methylase in a processome complex that
catalyzes the maturation of rRNA and tRNA.
Length = 165
Score = 25.6 bits (57), Expect = 4.6
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 27 ATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINR 63
++I+K+ K + + E EK +++ R
Sbjct: 129 RAEKKIRKKAEKRRKSRKKYLDRLSDEVLEKLEKLRR 165
>gnl|CDD|200494 cd11359, AmyAc_SLC3A1, Alpha amylase catalytic domain found in
Solute Carrier family 3 member 1 proteins. SLC3A1, also
called Neutral and basic amino acid transport protein
rBAT or NBAT, plays a role in amino acid and cystine
absorption. Mutations in the gene encoding SLC3A1 causes
cystinuria, an autosomal recessive disorder
characterized by the failure of proximal tubules to
reabsorb filtered cystine and dibasic amino acids. The
Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 456
Score = 25.8 bits (57), Expect = 5.1
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 30 EEIKKQ-YRKMALKYHPDKNPNNPEAAEKFKEI 61
+E + Q Y LK PD N NP+ ++ ++
Sbjct: 151 DEKRNQCYLHQFLKEQPDLNFRNPDVQQEMDDV 183
>gnl|CDD|219722 pfam08124, Lyase_8_N, Polysaccharide lyase family 8, N terminal
alpha-helical domain. This family consists of a group
of secreted bacterial lyase enzymes EC:4.2.2.1 capable
of acting on hyaluronan and chondroitin in the
extracellular matrix of host tissues, contributing to
the invasive capacity of the pathogen.
Length = 319
Score = 25.7 bits (57), Expect = 5.2
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 9 KMSTSGDSLYVILELPKTATPEEIKKQYR---KMALKYHPDKNPNN 51
++ S + Y+ +LP + YR MAL Y P +
Sbjct: 35 TLNKSANRTYLWEDLPSDTNSANLTTTYRRLETMALAY---TTPGS 77
>gnl|CDD|188634 cd00945, Aldolase_Class_I, Class I aldolases. Class I aldolases.
The class I aldolases use an active-site lysine which
stabilizes a reaction intermediates via Schiff base
formation, and have TIM beta/alpha barrel fold. The
members of this family include
2-keto-3-deoxy-6-phosphogluconate (KDPG) and
2-keto-4-hydroxyglutarate (KHG) aldolases,
transaldolase, dihydrodipicolinate synthase sub-family,
Type I 3-dehydroquinate dehydratase, DeoC and DhnA
proteins, and metal-independent
fructose-1,6-bisphosphate aldolase. Although
structurally similar, the class II aldolases use a
different mechanism and are believed to have an
independent evolutionary origin.
Length = 201
Score = 25.8 bits (57), Expect = 5.6
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 17 LYVILELPKTATPEEIKKQYRKMA 40
L VILE T +EI K R A
Sbjct: 116 LKVILETRGLKTADEIAKAARIAA 139
>gnl|CDD|153089 cd02888, RNR_II_dimer, Class II ribonucleotide reductase, dimeric
form. Ribonucleotide reductase (RNR) catalyzes the
reductive synthesis of deoxyribonucleotides from their
corresponding ribonucleotides. It provides the
precursors necessary for DNA synthesis. RNRs are
separated into three classes based on their
metallocofactor usage. Class I RNRs, found in
eukaryotes, bacteria, and bacteriophage, use a
diiron-tyrosyl radical. Class II RNRs, found in
bacteria, bacteriophage, algae and archaea, use coenzyme
B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found
in anaerobic bacteria, bacteriophage, and archaea, use
an FeS cluster and S-adenosylmethionine to generate a
glycyl radical. Many organisms have more than one class
of RNR present in their genomes. All three RNRs have a
ten-stranded alpha-beta barrel domain that is
structurally similar to the domain of PFL (pyruvate
formate lyase). Class II RNRs are found in bacteria that
can live under both aerobic and anaerobic conditions.
Many, but not all members of this class are found to be
homodimers. Adenosylcobalamin interacts directly with an
active site cysteine to form the reactive cysteine
radical.
Length = 464
Score = 25.7 bits (57), Expect = 6.1
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 23 LPKTATPEEIKKQYR---KMALK 42
LP AT E+++ Y K+ LK
Sbjct: 434 LPNDATVEDVEAVYLLAWKLGLK 456
>gnl|CDD|239618 cd03556, L-fucose_isomerase, L-fucose isomerase (FucIase); FucIase
converts L-fucose, an aldohexose, to its ketose form,
which prepares it for aldol cleavage (similar to the
isomerization of glucose during glycolysis). L-fucose
(or 6-deoxy-L-galactose) is found in blood group
determinants as well as in various oligo- and
polysaccharides, and glycosides in mammals, bacteria and
plants.
Length = 584
Score = 25.6 bits (56), Expect = 6.4
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 87 VAEQFGEENVNTYFMVTSTWC 107
AE+F ENV VT WC
Sbjct: 65 CAEKFTRENVGATITVTPCWC 85
>gnl|CDD|240359 PTZ00324, PTZ00324, glutamate dehydrogenase 2; Provisional.
Length = 1002
Score = 25.5 bits (56), Expect = 6.6
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 29 PEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
PE +K Y L + P++ +K +E R + ++ R I+
Sbjct: 389 PEFVKLLYEDFRLGHTPERRAAI---TQKIEETARLKEDIRNELDRTIF 434
>gnl|CDD|189013 cd09606, M3B_PepF_1, Peptidase family M3B Oligopeptidase F (PepF).
Peptidase family M3B Oligopeptidase F (PepF;
Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and
includes oligoendopeptidase F from Lactococcus lactis.
This enzyme hydrolyzes peptides containing between 7 and
17 amino acids with fairly broad specificity. The PepF
gene is duplicated in L. lactis on the plasmid that
bears it, while a shortened second copy is found in
Bacillus subtilis. Most bacterial PepFs are cytoplasmic
endopeptidases; however, the PepF Bacillus
amyloliquefaciens oligopeptidase is a secreted protein
and may facilitate the process of sporulation.
Specifically, the yjbG gene encoding the homolog of the
PepF1 and PepF2 oligoendopeptidases of Lactococcus
lactis has been identified in Bacillus subtilis as an
inhibitor of sporulation initiation when over expressed
from a multicopy plasmid.
Length = 546
Score = 25.6 bits (57), Expect = 6.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 27 ATPEEIKKQYRKMALKYHPDKN 48
TPEE K+++R++ +Y P +
Sbjct: 433 HTPEERKEKWRELEKRYLPWVD 454
>gnl|CDD|240761 cd12315, RRM1_RBM19_MRD1, RNA recognition motif 1 in RNA-binding
protein 19 (RBM19), yeast multiple RNA-binding
domain-containing protein 1 (MRD1) and similar
proteins. This subfamily corresponds to the RRM1 of
RBM19 and MRD1. RBM19, also termed RNA-binding domain-1
(RBD-1), is a nucleolar protein conserved in
eukaryotes. It is involved in ribosome biogenesis by
processing rRNA and is essential for preimplantation
development. It has a unique domain organization
containing 6 conserved RNA recognition motifs (RRMs),
also termed RBDs (RNA binding domains) or RNPs
(ribonucleoprotein domains). MRD1 is encoded by a novel
yeast gene MRD1 (multiple RNA-binding domain). It is
well-conserved in yeast and its homologs exist in all
eukaryotes. MRD1 is present in the nucleolus and the
nucleoplasm. It interacts with the 35 S precursor rRNA
(pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). It is
essential for the initial processing at the A0-A2
cleavage sites in the 35 S pre-rRNA. MRD1 contains 5
conserved RRMs, which may play an important structural
role in organizing specific rRNA processing events. .
Length = 77
Score = 24.5 bits (54), Expect = 6.9
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 19 VILELPKTATPEEIKKQYRKMALK 42
++ LP + T E+K+ + K +
Sbjct: 4 IVKNLPASLTEAELKEHFSKHGGE 27
>gnl|CDD|201432 pfam00764, Arginosuc_synth, Arginosuccinate synthase. This family
contains a PP-loop motif.
Length = 387
Score = 25.4 bits (56), Expect = 7.2
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 20 ILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAE 56
ILE P A PE+I P K P+ PE E
Sbjct: 183 ILEDPWNAPPEDI------YEWTKDPAKAPDEPEVVE 213
>gnl|CDD|173004 PRK14538, PRK14538, putative bifunctional signaling protein/50S
ribosomal protein L9; Provisional.
Length = 838
Score = 25.6 bits (56), Expect = 7.3
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 55 AEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFMV 102
E+F +I H+ D+ K ++ + S+G+Y + F + + F +
Sbjct: 786 VEEFHKI---HNITIDRKKISLENEIISVGIYPVDVFLTDQIKATFFL 830
>gnl|CDD|225382 COG2826, Tra8, Transposase and inactivated derivatives, IS30
family [DNA replication, recombination, and repair].
Length = 318
Score = 25.4 bits (56), Expect = 7.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 59 KEINRAHSTLSDQTKRN 75
K++NR HST+S + KRN
Sbjct: 31 KQLNRHHSTISRELKRN 47
>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated.
Length = 404
Score = 25.2 bits (56), Expect = 8.0
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 13/40 (32%)
Query: 48 NPNNPEAA-------EKFKEINRAHS--TLSDQTKRNIYD 78
NPNNP A E+ EI R H+ +D+ IYD
Sbjct: 176 NPNNPTGAVYSKELLEEIVEIARQHNLIIFADE----IYD 211
>gnl|CDD|145379 pfam02192, PI3K_p85B, PI3-kinase family, p85-binding domain.
Length = 78
Score = 24.2 bits (53), Expect = 8.4
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRA--HSTLSDQTKR 74
+ LE+P+ AT +IK++ K A Y P ++ F IN+ L D+T+R
Sbjct: 1 LLNLEVPREATLSDIKQELWKEAKNY-PLGYLLKDPSSYVFVCINQFAEREELEDETRR 58
>gnl|CDD|188697 cd08743, RGS_RGS14, Regulator of G protein signaling (RGS) domain
found in the RGS14 protein. RGS (Regulator of
G-protein Signaling) domain is an essential part of the
RGS14 protein. RGS14 is a member of the RA/RGS
subfamily of RGS proteins family, a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS14 belong to
the R12 RGS subfamily, which includes RGS10 and RGS12,
all of which are highly selective for G-alpha-i1 over
G-alpha-q. RGS14 binds and regulates the subcellular
localization and activities of H-Ras and Raf kinases
in cells and thereby integrates G protein and Ras/Raf
signaling pathways.
Length = 129
Score = 25.0 bits (54), Expect = 8.8
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 42 KYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGS 82
K +N N +A E+F++I + + Q R IY+ + S
Sbjct: 30 KEFSAENVNFWKACERFQQIPASDTQQLAQEARKIYNEFLS 70
>gnl|CDD|223526 COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains
amidotransferase and phosphosugar isomerase domains
[Cell envelope biogenesis, outer membrane].
Length = 597
Score = 25.2 bits (56), Expect = 9.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 53 EAAEKFKEINRAHS 66
E A K KEI+ H+
Sbjct: 472 EGALKLKEISYIHA 485
>gnl|CDD|112109 pfam03279, Lip_A_acyltrans, Bacterial lipid A biosynthesis
acyltransferase.
Length = 295
Score = 25.0 bits (55), Expect = 9.8
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 32 IKKQYRKMALKYHPDKNP 49
+ + Y MA + KNP
Sbjct: 140 LAQYYPGMATMFPNLKNP 157
>gnl|CDD|116493 pfam07881, Fucose_iso_N1, L-fucose isomerase, first N-terminal
domain. The members of this family are similar to
L-fucose isomerase expressed by E. coli (EC:5.3.1.3).
This enzyme corresponds to glucose-6-phosphate isomerase
in glycolysis, and converts an aldo-hexose to a ketose
to prepare it for aldol cleavage. The enzyme is a
hexamer, with each subunit being wedge-shaped and
composed of three domains. Both domains 1 and 2 contain
central parallel beta-sheets with surrounding alpha
helices. Domain 1 demonstrates the
beta-alpha-beta-alpha- beta Rossman fold. The active
centre is shared between pairs of subunits related along
the molecular three-fold axis, with domains 2 and 3 from
one subunit providing most of the substrate-contacting
residues, and domain 1 from the adjacent subunit
contributing some other residues.
Length = 171
Score = 24.6 bits (54), Expect = 10.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 88 AEQFGEENVNTYFMVTSTWC 107
AE+F +ENV VT WC
Sbjct: 69 AEKFKKENVGVTITVTPCWC 88
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.128 0.373
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,566,950
Number of extensions: 461361
Number of successful extensions: 607
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 114
Length of query: 109
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 35
Effective length of database: 7,655,406
Effective search space: 267939210
Effective search space used: 267939210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.1 bits)