RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4517
(109 letters)
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 154 bits (392), Expect = 8e-51
Identities = 72/96 (75%), Positives = 84/96 (87%)
Query: 6 PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAH 65
+R +STSG+SLY +L L K AT ++IKK YRK+ALKYHPDKNP+NPEAA+KFKEIN AH
Sbjct: 8 RQRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAH 67
Query: 66 STLSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYFM 101
+ L+D TKRNIYD YGSLGLYVAEQFGEENVNTYF+
Sbjct: 68 AILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFV 103
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 113 bits (283), Expect = 5e-33
Identities = 37/84 (44%), Positives = 51/84 (60%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + KTA+ EI++ ++K+ALK HPDKNPNNP A F +INRA+ L D+ R Y
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
Query: 78 DTYGSLGLYVAEQFGEENVNTYFM 101
D YG GL + E+ + Y
Sbjct: 65 DKYGEKGLEDNQGGQYESWSYYRY 88
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 112
Score = 109 bits (273), Expect = 2e-32
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 9 KMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTL 68
+ + D Y +L + ++ E+I +++ AL+ HPDK+P NP+A E F+++ +A L
Sbjct: 15 RSEDTED-YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEIL 73
Query: 69 SDQTKRNIYDTYGSLGLYVAEQFGEE 94
+++ R YD + + + Q E
Sbjct: 74 TNEESRARYDHWRRSQMSMPFQQWEA 99
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 106 bits (268), Expect = 3e-32
Identities = 38/68 (55%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y L L + A+ EEIK+ YR+ AL+YHPDKN P A EKFKEI A+ LSD KR I+
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIF 64
Query: 78 DTYGSLGL 85
D YG GL
Sbjct: 65 DRYGEEGL 72
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 107 bits (269), Expect = 3e-32
Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAE-KFKEINRAHSTLSDQTKRNI 76
Y IL++P++A+ ++IKK YR+ AL++HPDKNP+N E AE KFKE+ A+ LSD+ KR I
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 77 YDTYGSLGL 85
YD YG GL
Sbjct: 65 YDRYGREGL 73
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 107 bits (269), Expect = 4e-32
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI 76
LY +L +P TAT +IK Y + YHPD+N + EAAE+F I++A+ L T R
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78
Query: 77 YDTYG 81
YD
Sbjct: 79 YDRGL 83
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 106 bits (267), Expect = 5e-32
Identities = 38/69 (55%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAE-KFKEINRAHSTLSDQTKRNI 76
Y +L++P+ A+ E IKK YRK+ALK+HPDKNP N E AE +FK++ A+ LSD KR+I
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71
Query: 77 YDTYGSLGL 85
YD YGS
Sbjct: 72 YDRYGSGPS 80
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 106 bits (268), Expect = 7e-32
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL + KTA EI+K Y+++A+KYHPD+N + EA KFKEI A+ L+D KR Y
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 78 DTYG 81
D YG
Sbjct: 66 DQYG 69
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 105 bits (264), Expect = 2e-31
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAE-KFKEINRAHSTLSDQTKRNI 76
Y +L + +A+PE+IKK YRK+AL++HPDKNP+N E AE KFK ++ A+ LSD KR++
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 77 YDTYGSLGL 85
YD G
Sbjct: 72 YDRAGCDSW 80
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 111 bits (279), Expect = 4e-31
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL + T + IK YR++A KYHPD + +A KFK++ A L D+ +R Y
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSK-ENDAEAKFKDLAEAWEVLKDEQRRAEY 89
Query: 78 DTYGSLG 84
D
Sbjct: 90 DQLWQHR 96
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 104 bits (261), Expect = 5e-31
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL +P+ A+ +EIKK Y ++A KYHPD N ++P+A EKF ++ A+ LSD+ KR Y
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQY 69
Query: 78 DTYGSLG 84
D YGS
Sbjct: 70 DAYGSGP 76
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 102 bits (257), Expect = 2e-30
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 8 RKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHST 67
+ +S Y +L + +TA+ +IKK Y+K+A ++HPDKN +P A ++F +I++A+
Sbjct: 10 QSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEI 68
Query: 68 LSDQTKRNIYDTYGSLGL 85
LS++ KR YD YGS
Sbjct: 69 LSNEEKRTNYDHYGSGPS 86
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 103 bits (259), Expect = 5e-30
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP------EAAEKFKEINRAHSTLSDQ 71
Y IL +A ++K++Y+K+ L YHPDK + E +KF EI++A L ++
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72
Query: 72 TKRNIYDTYGSLGLYVAEQFGEENVNTYFM 101
+ YD + V M
Sbjct: 73 ETKREYDLQRCEDDLRNVGPVDAQVYLEEM 102
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 100 bits (250), Expect = 2e-29
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL + + A+ E++KK YR++ALK+HPDKN P A E FK I A++ LS+ KR Y
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRKQY 68
Query: 78 DTYGSLGL 85
D +GS
Sbjct: 69 DQFGSGPS 76
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 98.8 bits (247), Expect = 4e-29
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 8 RKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHST 67
M Y +L + A+ E+KK YRKMALK+HPDKNP+ AE+FK+I++A+
Sbjct: 2 NAMVKETG-YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEV 57
Query: 68 LSDQTKRNIYDTYG 81
LSD+ KR IYD G
Sbjct: 58 LSDEKKRQIYDQGG 71
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 98.6 bits (246), Expect = 1e-28
Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI 76
LY +L + +A +E+KK YRK ALKYHPDK + EKFKEI+ A L+D KR I
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAFEILNDPQKREI 66
Query: 77 YDTYGSLGL 85
YD YG
Sbjct: 67 YDQYGLEAA 75
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 98.7 bits (246), Expect = 1e-28
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNP------EAAEKFKEINRAHSTLSDQ 71
Y IL +A ++K++Y+K+ L YHPDK + E +KF EI++A L ++
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 72 TKRNIYDTYGSLG 84
+ YD S
Sbjct: 79 ETKKKYDLQRSGP 91
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 97.4 bits (243), Expect = 3e-28
Identities = 34/64 (53%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y IL +PK+A+ +IKK + K+A+KYHPDKN +P+A KF+EI A+ TLSD +R Y
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 78 DTYG 81
DT G
Sbjct: 69 DTLG 72
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 92.9 bits (231), Expect = 3e-26
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 18 YVILELPKTA-TPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLSDQTK 73
Y +LE+ + +++ K YR +A K+HPD+ N E A E+F+ I A+ TL D
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 74 RNIYDTYG 81
+ YD Y
Sbjct: 78 KTNYDYYL 85
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 94.2 bits (234), Expect = 4e-26
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 17 LYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKR 74
L +L L ++A ++K Y K ++HPDK + EK K++N + + D K
Sbjct: 13 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKY 68
Query: 75 NIYDTYGSLG 84
+G
Sbjct: 69 AHQPDFGGFW 78
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 90.9 bits (226), Expect = 1e-25
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAE-KFKEINRAHSTLSDQTKRNI 76
++E E KK R++ LK+HPDKNP N + A FK + + L K+
Sbjct: 19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQAF 75
Query: 77 YDTYGSLGL 85
D
Sbjct: 76 LDQNADRAS 84
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 90.2 bits (224), Expect = 2e-25
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
+ +L + A+ +E+ K YRK+A+ HPDK P + + FK + A + L K
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLKNIKSGPS 88
Query: 78 D 78
Sbjct: 89 S 89
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor
protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 88.3 bits (219), Expect = 2e-24
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 9 KMSTSGDSLYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHS 66
M L +L L ++A ++K Y K ++HPDK + EK K++N +
Sbjct: 2 HMREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYK 57
Query: 67 TLSDQTKRNIYDTYGS 82
+ D K +G
Sbjct: 58 KMEDGVKYAHQPDFGG 73
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 91.7 bits (227), Expect = 3e-23
Identities = 37/90 (41%), Positives = 52/90 (57%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIY 77
Y +L + KTA+ EI++ ++K+ALK HPDKNPNNP A F +INRA+ L D+ R Y
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83
Query: 78 DTYGSLGLYVAEQFGEENVNTYFMVTSTWC 107
D YG GL + E+ + Y +
Sbjct: 84 DKYGEKGLEDNQGGQYESWSYYRYDFGIYD 113
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 73.2 bits (180), Expect = 9e-17
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLSDQTKR 74
Y IL + + A +EI K YRK+AL++HPD N E A +KF +I A LSD R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Query: 75 NIYD 78
+D
Sbjct: 445 KKFD 448
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 69.5 bits (169), Expect = 3e-16
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLS 69
+G++ + + + TPE++KK YRK L HPDK P A F E+N A S
Sbjct: 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 174
Query: 70 DQTKRNIY 77
+Q ++ +Y
Sbjct: 175 NQGQKPLY 182
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 68.0 bits (166), Expect = 9e-16
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 18 YVILELPKTAT--PEEIKKQYRKMALKYHPDKNPNNPE-----AAEKFKEINRAHSTLSD 70
+ + LP + Q+R + ++HPD E A ++ +IN A+ TL D
Sbjct: 7 FELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKD 66
Query: 71 QTKRNIYD 78
+R Y
Sbjct: 67 PLRRAEYL 74
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 67.7 bits (165), Expect = 1e-15
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 18 YVILELPKTAT--PEEIKKQYRKMALKYHPDKNPNNPE-----AAEKFKEINRAHSTLSD 70
+ + LP + + +++ + +YHPDK + + A ++ IN+A TL
Sbjct: 4 FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63
Query: 71 QTKRNIYD 78
R Y
Sbjct: 64 PLMRAEYL 71
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 64.2 bits (156), Expect = 2e-15
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 17 LYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKR 74
L +L+LP+ +++ Y++ +L HPDK + +E+N T +
Sbjct: 13 LLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYN 68
Query: 75 NIYDTYGS 82
+ G+
Sbjct: 69 LRMNLGGT 76
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 63.1 bits (153), Expect = 6e-14
Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 29 PEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNIYDTYGSLGLYVA 88
++K+YR++ ++HPD +E+ +N+A+ TL D +R+ Y + +
Sbjct: 32 QSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLT 88
Query: 89 EQFGEEN 95
++
Sbjct: 89 QEQTSNE 95
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 59.6 bits (144), Expect = 2e-13
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLS 69
+G++ + + + TPE++KK YRK L HP K P A F E+N A S
Sbjct: 31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFE 90
Query: 70 DQ 71
+Q
Sbjct: 91 NQ 92
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 55.1 bits (133), Expect = 9e-12
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 18 YVILEL-PKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKR 74
IL L T T +++K+ +RK+ L HPDK + +IN A L +
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP----FLATKINEAKDFLEKRGIS 70
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 56.7 bits (136), Expect = 2e-11
Identities = 10/68 (14%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 18 YVILELPKTAT--PEEIKKQYRKMALKYHPDKNPNNPE-----AAEKFKEINRAHSTLSD 70
+ +++ ++ +++ +Y+++ HPD + + + +N A+ TL
Sbjct: 46 FSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA 105
Query: 71 QTKRNIYD 78
R +Y
Sbjct: 106 PLSRGLYL 113
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 52.7 bits (126), Expect = 1e-10
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 15 DSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPE-------AAEKFKEINRAHST 67
S + + L ++K Y++ L HPDK A + F+ + A
Sbjct: 40 GSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDH 99
Query: 68 LSDQ 71
+
Sbjct: 100 FNTL 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 7e-04
Identities = 12/92 (13%), Positives = 24/92 (26%), Gaps = 39/92 (42%)
Query: 19 VILELPKTATPEEIKKQ------YRKMALKYHPDKNPNNP---EAAEK------------ 57
+ +L + +K + + P +N A +
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 58 ------FKEINRAHSTLSDQTKRNIYDTYGSL 83
F+E+ R++Y TY L
Sbjct: 164 GNTDDYFEEL------------RDLYQTYHVL 183
Score = 35.8 bits (82), Expect = 0.001
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 43/119 (36%)
Query: 10 MSTSGDSLY-VILELPKTATP-------EEIKKQYRKMALKYHPDKNPNNPEAAEKFKEI 61
T G S+ +++ P T + I++ Y M + D + + FKEI
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD---GKLKTEKIFKEI 1710
Query: 62 NRAHSTLS--------DQT-------------------KRNIYDTY----G-SLGLYVA 88
N ++ + T + + G SLG Y A
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA 1769
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.002
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
Query: 33 KKQYRKM--ALK-YHPDKNP 49
K+ +K+ +LK Y D P
Sbjct: 19 KQALKKLQASLKLYADDSAP 38
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 32.4 bits (74), Expect = 0.019
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 11/83 (13%)
Query: 9 KMSTSGDSLYVILELPKTATPEEIKKQYRKMAL------KYHPDKNPNNPEAAEKFKEIN 62
KMS S + L T +PE+++K+ K L + PE F +
Sbjct: 253 KMSASKPETAIYL----TDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVF-KWL 307
Query: 63 RAHSTLSDQTKRNIYDTYGSLGL 85
D+ + Y + L
Sbjct: 308 EIFFEEDDKKLKERYYACKNGEL 330
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 30.9 bits (71), Expect = 0.050
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 6 PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAH 65
KMS S + I + + +KKQ + ++P + E FK I +
Sbjct: 189 DGAKMSKSYQNTIDIFS-----SEKTLKKQISSIVTDSTALEDPKDHENCNIFK-IAKLF 242
Query: 66 STLSDQTKRNIYDTYGSLG 84
S Q + I G G
Sbjct: 243 LDESGQKELQIRYEKGGEG 261
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 30.4 bits (68), Expect = 0.098
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 6 PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMAL------KYHPDKNPNNPE 53
KMS S D+ + + T TP++I+K+ K A + NP+
Sbjct: 292 STTKMSASDDTTAIFM----TDTPKQIQKKINKYAFSGGQVSADLHRELGGNPD 341
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.14
Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 26/118 (22%)
Query: 9 KMSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKN-P--------NNPEAAEKFK 59
K++T +S +LE P E +K + ++++ + P + P + ++
Sbjct: 354 KLTTIIESSLNVLE------PAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 60 EINRAHSTLSDQTKRNIYDTYGSLGLYVAEQFGEEN--------VNTYFMVTSTWCKN 109
+N+ H S K+ T +Y+ + EN V+ Y + T+ +
Sbjct: 407 VVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSD 462
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 29.1 bits (65), Expect = 0.22
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 6 PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMAL------KYHPDKNPNNPEAAEKFK 59
+ KMS S + + + E I+ + K A + + N + ++
Sbjct: 263 SQTKMSASVQNSSIFV----NDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQ 318
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 28.7 bits (65), Expect = 0.31
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 17/73 (23%)
Query: 6 PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKM-----ALKYHPDKNPNNPEAAEKFKE 60
+ KMS S + +LE E I ++ + + ++ P +PE F
Sbjct: 192 GKAKMSKSLGNTIGLLE-----PEESIWQKIQHLPDDPQRIRLSD---PGDPERTILFT- 242
Query: 61 INRAHSTLSDQTK 73
S + +
Sbjct: 243 ---YLSYFAPKDL 252
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 28.8 bits (64), Expect = 0.34
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 12/86 (13%)
Query: 6 PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMAL------KYHPDKNPNNPEAAEKFK 59
+ KMS S + + L T T ++IK + K A + N + F
Sbjct: 299 AQTKMSASDPNSSIFL----TDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 354
Query: 60 EINRAHSTLSDQTKRNIYDTYGSLGL 85
+ D I Y S +
Sbjct: 355 YLTFFLED--DDKLEQIRKDYTSGAM 378
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 65
Score = 26.7 bits (59), Expect = 0.63
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 20 ILELPKTATPEEIKKQYRKMALKYHPDK 47
I E ++I ++ + +K
Sbjct: 12 IEESKGDLNMDKINNRFNYLFEVNDKEK 39
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 88
Score = 26.8 bits (59), Expect = 0.74
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 12 TSGDSLYVILELPKTATPEEIKKQYRKMALKYHPD 46
+ + L + ++ AT EIK + K +++P
Sbjct: 19 KTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPA 53
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 1.3
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 25 KTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAH 65
A + +++++R+ A K + N E EK K NR
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 26.9 bits (59), Expect = 1.7
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 10/60 (16%)
Query: 6 PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMAL------KYHPDKNPNNPEAAEKFK 59
+ KMS S + + L T T ++IK + K A + N + F
Sbjct: 346 AQTKMSASDPNSSIFL----TDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 401
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule
biogenesis/degradation, manganese, hydrolase,
exopolysaccharide synthesis; 1.90A {Streptococcus
pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Length = 247
Score = 26.5 bits (58), Expect = 1.8
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 12 TSGDSLYVILELPKTATPEEIKKQYRKMALK------YHPDKNP---NNPEAAEKFKEIN 62
T DS Y ++E +I K+ + H ++ NN + + ++
Sbjct: 102 TLNDSRYALIEFSMNTPYRDIHSALSKILMLGITPVIAHIERYDALENNEKRVRELIDMG 161
Query: 63 -RAHSTLSDQTKRNIYDTYGSLGLYVAEQFGEENV 96
S K ++ A+ F E+++
Sbjct: 162 CYTQVNSSHVLKPKLFGERYKFMKKRAQYFLEQDL 196
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 26.4 bits (59), Expect = 2.1
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 6 PRRKMSTSGDSLYVILELPKTATPEEIKKQYRKM 39
+ KMS S + + + + +E+ ++ M
Sbjct: 212 GQAKMSKSLGNAIALGD-----SADEVARKVMGM 240
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 26.2 bits (57), Expect = 2.2
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 20 ILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEIN 62
I + K A + + + +++H K +P +++N
Sbjct: 11 IDAVMKAAQINDTN-NFVQALMRWHFSKETGSPFWLGMREQLN 52
>1h16_A Formate acetyltransferase 1; lyase, glycyl radical enzyme,
acyltransferase, acetylation; HET: COA PG4; 1.53A
{Escherichia coli} SCOP: c.7.1.1 PDB: 1h17_A* 1h18_A*
1mzo_A* 2pfl_A 3pfl_A 1cm5_A 1qhm_A
Length = 759
Score = 25.7 bits (56), Expect = 4.1
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 12/96 (12%)
Query: 10 MSTSGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEA-------AEKFKEIN 62
+S + DSL I +E +P N+P E+F +
Sbjct: 529 LSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKI 588
Query: 63 RAHSTLSDQTKRNIYDTYGSLGLYVAEQFGEENVNT 98
+ T R+ T L + +G++ NT
Sbjct: 589 QKLH-----TYRDAIPTQSVLTITSNVVYGKKTGNT 619
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 25.4 bits (55), Expect = 4.8
Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 12/80 (15%)
Query: 9 KMSTSGDSLYVILELPKTATPEEIKKQYRKMAL------KYHPDKNPNNPEAAEKFKEIN 62
K D ++L + ++++++ K+A K + F+ +N
Sbjct: 269 KFDIPSDHNSILL----SDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLN 324
Query: 63 RAHSTLSDQTKRNIYDTYGS 82
S + +++ + Y
Sbjct: 325 IFSSD--NAQVKDVEEKYSK 342
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
alpha isoform; PI3KCA, PI3K, PIK3R1,
phosphatidilynositol 3,4,5- triphosphate, wortmannin,
H1047R, ATP-binding, disease mutation, kinase; HET:
KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A*
2enq_A
Length = 1091
Score = 25.2 bits (54), Expect = 6.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 16 SLYVILELPKTATPEEIKKQYRKMALKY 43
+ V LE + AT IK + K A KY
Sbjct: 52 GMIVTLECLREATLITIKHELFKEARKY 79
>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to
L conversion; HET: FOC; 2.50A {Escherichia coli} SCOP:
b.43.2.1 c.85.1.1
Length = 591
Score = 25.2 bits (54), Expect = 6.2
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 87 VAEQFGEENVNTYFMVTSTWC 107
E+F +NV VT WC
Sbjct: 71 CEEKFSSQNVGLTITVTPCWC 91
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase;
1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Length = 273
Score = 24.7 bits (53), Expect = 7.0
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 22 ELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEI 61
T EE+K+ + L Y P + AE + +
Sbjct: 136 ATLTFLTLEELKEANFNVDLDYRPALPRCSLMPAESYDQY 175
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacteroides fragilis}
Length = 491
Score = 25.0 bits (55), Expect = 7.0
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 24 PKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAH 65
P+ K+ Y+ + ++ P+ P + + R +
Sbjct: 234 GYELVPDRYKEIYKDLDVEALCKGRPDIPAKGTEMGDYFRNN 275
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer,
THDP cofactor, oxidoreductase; HET: TDP; 2.40A
{Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Length = 407
Score = 25.0 bits (55), Expect = 7.2
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 3 APPPRRKMSTSGDSLYVILELPKTATPEEIKKQYRKMAL 41
+ R + GD + P+ +++ R M
Sbjct: 50 SYSLVRVLDEQGD---AQGPWAEDIDPQILRQGMRAMLK 85
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 24.4 bits (54), Expect = 8.6
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 8 RKMSTS-GDSLYVILELPKTATPEEIKKQYRKM 39
RKMS S G+ + + + +E+++ +M
Sbjct: 204 RKMSKSYGNIINL------EISEKELEQTILRM 230
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 24.5 bits (54), Expect = 9.8
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 86 YVAEQFGEENVNTYFMVTST 105
+ E + + +F+ T
Sbjct: 57 LIGELLERPDADVHFISGGT 76
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate
metabolism, cytoplasm, fucose metabolism, manganese,
metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A
3a9t_A*
Length = 595
Score = 24.4 bits (52), Expect = 10.0
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 87 VAEQFGEENVNTYFMVTSTWC 107
AE+F E V VT WC
Sbjct: 76 AAEKFAREGVGVSITVTPCWC 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.373
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,695,151
Number of extensions: 88474
Number of successful extensions: 382
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 87
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.7 bits)