RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4517
(109 letters)
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 71.1 bits (174), Expect = 3e-18
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 13 SGDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPE---AAEKFKEINRAHSTLS 69
+G++ + + + TPE++KK YRK L HPDK P A F E+N A S
Sbjct: 31 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 90
Query: 70 DQTKRNIY 77
+Q ++ +Y
Sbjct: 91 NQGQKPLY 98
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 69.7 bits (170), Expect = 7e-18
Identities = 33/69 (47%), Positives = 43/69 (62%)
Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTKRNI 76
Y IL + KTA EI+K Y+++A+KYHPD+N + EA KFKEI A+ L+D KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 77 YDTYGSLGL 85
YD YG
Sbjct: 65 YDQYGHAAF 73
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 68.6 bits (167), Expect = 2e-17
Identities = 39/72 (54%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 14 GDSLYVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTK 73
G Y L L + A+ EEIK+ YR+ AL+YHPDKN P A EKFKEI A+ LSD K
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRK 60
Query: 74 RNIYDTYGSLGL 85
R I+D YG GL
Sbjct: 61 REIFDRYGEEGL 72
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 66.6 bits (162), Expect = 2e-16
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 18 YVILELPKTATPEEIKKQYRKMALKYHPDKNPNNPEAAEK------FKEINRAHSTLSDQ 71
Y IL +A ++K++Y+K+ L YHPDK + A F EI++A L ++
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 72 TKRNIYDTYGS 82
+ YD S
Sbjct: 79 ETKKKYDLQRS 89
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 61.2 bits (148), Expect = 1e-14
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 18 YVILELPKTAT--PEEIKKQYRKMALKYHPDKNPNNPEAA-----EKFKEINRAHSTLSD 70
+ + LP + + +++ + +YHPDK + +A ++ IN+A TL
Sbjct: 4 FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63
Query: 71 QTKRNIYD 78
R Y
Sbjct: 64 PLMRAEYL 71
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 61.2 bits (148), Expect = 1e-14
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 16 SLYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHSTLSDQTK 73
L +L+LP+ +++ Y++ +L HPDK ++ +E+N T +
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA----LMQELNSLWGTFKTEVY 67
Query: 74 RNIYDTYGS 82
+ G+
Sbjct: 68 NLRMNLGGT 76
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 54.3 bits (130), Expect = 9e-12
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 17 LYVILELPKTATPEEIKKQYRKMALKYHPDKNPNN-PEAAEKFKEINRAHSTLSDQTKRN 75
+ ++E E KK R++ LK+HPDKNP N A E FK + + L K+
Sbjct: 18 VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQA 74
Query: 76 IYDTYG 81
D
Sbjct: 75 FLDQNA 80
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 51.3 bits (122), Expect = 2e-10
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Query: 10 MSTSGDSLYVILELPKTA--TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRAHST 67
M L +L L ++A ++K Y K ++HPDK + K K++N +
Sbjct: 3 MREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYKK 58
Query: 68 LSDQTKRNIYDTYGSLGLYVAEQFGEENVNTYF 100
+ D K +G + +
Sbjct: 59 MEDGVKYAHQPDFGGFWDATEIPTYGTDEWEQW 91
>d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and
second domains {Escherichia coli [TaxId: 562]}
Length = 355
Score = 25.2 bits (55), Expect = 1.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 87 VAEQFGEENVNTYFMVTSTWC 107
E+F +NV VT WC
Sbjct: 71 CEEKFSSQNVGLTITVTPCWC 91
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
dehydrogenase, PP module {Thermus thermophilus [TaxId:
274]}
Length = 362
Score = 24.1 bits (51), Expect = 5.4
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 19 VILELPKTATPEEIKKQYRKMAL 41
+ + P E++++ YR M
Sbjct: 20 WLGDFPLDLEGEKLRRLYRDMLA 42
>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA,
peptide-binding domain {Escherichia coli [TaxId: 562]}
Length = 173
Score = 23.1 bits (49), Expect = 7.6
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 28 TPEEIKKQYRKMALKYHPDKNPNNPEAAEKFKEINRA 64
P+E++ +++ Y N E A + + RA
Sbjct: 129 LPQEVESLAQQVDRAYRMLMNRKFSEEAASWMQEQRA 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.128 0.373
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 419,543
Number of extensions: 17754
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 22
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.0 bits)