Query psy4518
Match_columns 376
No_of_seqs 254 out of 1270
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 19:12:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z0k_B FYVE-finger-containing 99.9 2.7E-22 9.1E-27 150.6 6.7 64 302-365 3-68 (69)
2 1x4u_A Zinc finger, FYVE domai 99.8 3.7E-20 1.3E-24 146.8 5.7 73 52-129 5-78 (84)
3 3v1a_A Computational design, M 99.8 7.2E-20 2.5E-24 127.8 5.1 44 319-362 3-46 (48)
4 1yzm_A FYVE-finger-containing 99.8 1.6E-19 5.5E-24 127.8 5.8 47 319-365 4-50 (51)
5 1z2q_A LM5-1; membrane protein 99.8 8.9E-20 3.1E-24 144.6 4.1 68 51-129 11-79 (84)
6 2yw8_A RUN and FYVE domain-con 99.8 7.2E-20 2.5E-24 144.5 2.6 66 53-131 11-77 (82)
7 3t7l_A Zinc finger FYVE domain 99.7 3.6E-19 1.2E-23 142.9 3.2 72 49-133 8-80 (90)
8 1z0j_B FYVE-finger-containing 99.7 1.5E-18 5.1E-23 126.0 5.3 48 318-365 10-57 (59)
9 1joc_A EEA1, early endosomal a 99.7 4.3E-19 1.5E-23 150.8 2.8 65 51-128 59-124 (125)
10 1vfy_A Phosphatidylinositol-3- 99.7 1.7E-18 5.9E-23 133.6 3.5 64 52-129 5-69 (73)
11 1y02_A CARP2, FYVE-ring finger 99.7 1.1E-17 3.6E-22 140.7 2.4 80 54-151 12-91 (120)
12 1wfk_A Zinc finger, FYVE domai 99.7 1.6E-17 5.4E-22 132.7 1.5 63 58-132 6-69 (88)
13 1dvp_A HRS, hepatocyte growth 99.6 6.1E-17 2.1E-21 150.0 3.4 65 51-129 154-219 (220)
14 3zyq_A Hepatocyte growth facto 99.6 7.4E-17 2.5E-21 150.2 2.0 68 50-131 156-224 (226)
15 3mpx_A FYVE, rhogef and PH dom 99.5 8.3E-16 2.8E-20 154.8 1.5 68 50-129 364-432 (434)
16 2vrw_B P95VAV, VAV1, proto-onc 98.3 2.8E-07 9.5E-12 91.8 3.8 72 22-96 321-393 (406)
17 3ky9_A Proto-oncogene VAV; cal 96.9 0.0005 1.7E-08 71.7 3.8 72 22-96 493-565 (587)
18 2zet_C Melanophilin; complex, 96.5 0.0019 6.7E-08 56.0 4.5 50 61-127 68-118 (153)
19 1zbd_B Rabphilin-3A; G protein 96.4 0.0029 9.8E-08 53.8 4.6 55 60-128 54-109 (134)
20 1wfp_A Zinc finger (AN1-like) 92.6 0.089 3E-06 39.8 3.4 39 49-90 12-51 (74)
21 2e72_A POGO transposable eleme 92.4 0.024 8.1E-07 39.2 0.0 34 53-87 5-40 (49)
22 1wfl_A Zinc finger protein 216 92.2 0.11 3.8E-06 39.3 3.4 30 58-90 22-51 (74)
23 1z60_A TFIIH basal transcripti 91.7 0.019 6.5E-07 41.8 -1.3 40 55-95 9-48 (59)
24 1wff_A Riken cDNA 2810002D23 p 91.6 0.15 5E-06 39.7 3.6 34 54-89 17-51 (85)
25 1wfh_A Zinc finger (AN1-like) 91.5 0.1 3.5E-06 38.4 2.5 28 60-90 14-41 (64)
26 1wg2_A Zinc finger (AN1-like) 89.2 0.3 1E-05 36.0 3.3 29 59-90 13-41 (64)
27 1x4w_A Hypothetical protein FL 86.2 0.31 1.1E-05 36.2 1.9 37 53-90 6-44 (67)
28 2csz_A Synaptotagmin-like prot 86.1 0.38 1.3E-05 36.6 2.3 34 61-94 25-59 (76)
29 2fiy_A Protein FDHE homolog; F 83.8 1 3.4E-05 43.2 4.7 64 61-127 182-263 (309)
30 2ct7_A Ring finger protein 31; 82.7 0.55 1.9E-05 36.2 2.0 37 58-94 22-60 (86)
31 3l11_A E3 ubiquitin-protein li 81.9 1.4 4.9E-05 35.1 4.3 46 63-129 17-62 (115)
32 2a20_A Regulating synaptic mem 79.7 1.1 3.6E-05 32.4 2.4 51 60-125 8-59 (62)
33 1twf_L ABC10-alpha, DNA-direct 79.1 0.8 2.7E-05 34.3 1.7 28 60-87 27-56 (70)
34 3cc2_Z 50S ribosomal protein L 78.4 0.54 1.8E-05 38.6 0.6 29 62-90 61-91 (116)
35 2jrp_A Putative cytoplasmic pr 76.9 1 3.5E-05 34.7 1.7 32 63-94 4-40 (81)
36 2ecm_A Ring finger and CHY zin 76.6 1.2 4.3E-05 30.2 2.1 35 61-95 5-39 (55)
37 2ckl_B Ubiquitin ligase protei 75.0 0.064 2.2E-06 46.2 -6.2 46 63-128 56-101 (165)
38 2jne_A Hypothetical protein YF 73.0 1.1 3.8E-05 35.6 1.1 33 62-94 33-70 (101)
39 2ecl_A Ring-box protein 2; RNF 72.9 1.6 5.5E-05 32.8 2.0 45 51-95 5-60 (81)
40 1vd4_A Transcription initiatio 72.8 1 3.6E-05 31.5 0.9 26 62-87 15-49 (62)
41 1iym_A EL5; ring-H2 finger, ub 72.2 2.1 7.1E-05 29.1 2.3 34 62-95 6-39 (55)
42 2lv2_A Insulinoma-associated p 71.8 2 6.9E-05 32.8 2.3 17 56-72 23-39 (85)
43 1vq8_Z 50S ribosomal protein L 71.2 1.1 3.7E-05 34.7 0.6 28 63-90 29-58 (83)
44 2lce_A B-cell lymphoma 6 prote 70.9 2.5 8.7E-05 30.1 2.6 18 55-72 11-28 (74)
45 2ct2_A Tripartite motif protei 69.0 1.8 6.3E-05 32.4 1.5 34 62-95 16-49 (88)
46 4gzn_C ZFP-57, zinc finger pro 68.4 1.9 6.3E-05 30.7 1.4 26 63-88 6-43 (60)
47 3lrq_A E3 ubiquitin-protein li 67.6 1.3 4.5E-05 34.6 0.5 29 63-94 24-52 (100)
48 2egp_A Tripartite motif-contai 65.9 3.2 0.00011 30.3 2.3 30 62-95 13-42 (79)
49 3j20_Y 30S ribosomal protein S 65.9 2 6.8E-05 29.9 1.0 26 62-87 20-47 (50)
50 3k7a_M Transcription initiatio 65.8 3 0.0001 40.2 2.7 42 47-88 6-53 (345)
51 3jyw_9 60S ribosomal protein L 64.7 3.1 0.0001 31.3 1.9 26 62-89 27-56 (72)
52 1x4v_A Hypothetical protein LO 63.1 3.9 0.00013 29.8 2.2 26 61-89 12-39 (63)
53 3uk3_C Zinc finger protein 217 62.6 3.4 0.00012 27.5 1.8 11 62-72 5-15 (57)
54 2ecv_A Tripartite motif-contai 62.4 4.6 0.00016 29.6 2.7 30 61-94 19-48 (85)
55 2gqj_A Zinc finger protein KIA 62.4 1.8 6.1E-05 33.1 0.3 28 61-88 24-65 (98)
56 1bor_A Transcription factor PM 61.3 6.1 0.00021 27.3 3.0 32 59-94 4-35 (56)
57 3iz5_m 60S ribosomal protein L 61.1 2.7 9.3E-05 33.0 1.1 27 62-90 37-67 (92)
58 3j21_i 50S ribosomal protein L 61.0 2.4 8.2E-05 32.7 0.8 26 62-89 36-65 (83)
59 2lcq_A Putative toxin VAPC6; P 60.9 2.8 9.5E-05 35.9 1.3 25 62-86 133-157 (165)
60 2ysl_A Tripartite motif-contai 60.4 2.9 9.8E-05 30.1 1.1 31 61-95 20-50 (73)
61 1pft_A TFIIB, PFTFIIBN; N-term 60.1 4.2 0.00014 27.7 1.9 26 62-87 6-34 (50)
62 2ysj_A Tripartite motif-contai 59.6 3.5 0.00012 28.9 1.5 31 61-95 20-50 (63)
63 1bbo_A Human enhancer-binding 59.1 4.2 0.00015 27.0 1.8 10 63-72 3-12 (57)
64 3na7_A HP0958; flagellar bioge 58.7 7.2 0.00025 35.8 3.8 63 23-88 158-233 (256)
65 2adr_A ADR1; transcription reg 58.1 4.4 0.00015 27.3 1.7 10 63-72 4-13 (60)
66 2ep4_A Ring finger protein 24; 58.0 3.6 0.00012 29.8 1.3 33 61-94 15-47 (74)
67 3izc_m 60S ribosomal protein R 57.9 3.3 0.00011 32.5 1.1 26 62-89 37-66 (92)
68 2jmo_A Parkin; IBR, E3 ligase, 57.6 8.1 0.00028 29.1 3.3 37 58-94 22-67 (80)
69 3fl2_A E3 ubiquitin-protein li 57.1 2.5 8.5E-05 34.2 0.3 28 63-94 54-81 (124)
70 2ea6_A Ring finger protein 4; 57.1 3.4 0.00011 29.2 1.0 36 60-95 14-52 (69)
71 2ect_A Ring finger protein 126 56.5 6.2 0.00021 28.8 2.4 35 60-95 14-48 (78)
72 4ayc_A E3 ubiquitin-protein li 56.5 2.1 7.1E-05 35.5 -0.3 28 63-94 55-82 (138)
73 2kiz_A E3 ubiquitin-protein li 55.6 6.3 0.00022 28.0 2.3 35 60-95 13-47 (69)
74 1ffk_W Ribosomal protein L37AE 55.1 3.4 0.00011 31.1 0.7 28 62-89 28-57 (73)
75 2rkl_A Vacuolar protein sortin 54.9 16 0.00054 25.7 4.1 36 319-354 10-45 (53)
76 2ctd_A Zinc finger protein 512 54.8 4 0.00014 31.4 1.1 11 62-72 35-46 (96)
77 1t1h_A Gspef-atpub14, armadill 54.7 2.5 8.6E-05 31.0 -0.1 29 62-94 9-37 (78)
78 4a17_Y RPL37A, 60S ribosomal p 54.1 3 0.0001 33.4 0.3 28 62-90 37-67 (103)
79 1wd2_A Ariadne-1 protein homol 54.0 13 0.00043 26.6 3.6 35 61-95 6-44 (60)
80 2kdx_A HYPA, hydrogenase/ureas 53.9 4.7 0.00016 32.7 1.5 26 61-86 73-99 (119)
81 1x4j_A Ring finger protein 38; 53.3 3.9 0.00013 29.8 0.8 35 60-95 22-56 (75)
82 1jm7_A BRCA1, breast cancer ty 52.6 5 0.00017 31.4 1.4 28 63-94 23-50 (112)
83 1gh9_A 8.3 kDa protein (gene M 52.5 2.8 9.4E-05 31.4 -0.2 24 62-87 5-30 (71)
84 2eps_A POZ-, at HOOK-, and zin 52.5 6.3 0.00021 26.3 1.7 11 62-72 13-23 (54)
85 1chc_A Equine herpes virus-1 r 52.2 6.4 0.00022 27.8 1.8 30 62-94 6-35 (68)
86 2d9h_A Zinc finger protein 692 51.6 4.8 0.00016 28.8 1.1 11 62-72 8-18 (78)
87 1x5w_A Zinc finger protein 64, 51.4 5.7 0.0002 27.8 1.4 11 62-72 10-20 (70)
88 2d8t_A Dactylidin, ring finger 51.4 4.1 0.00014 29.4 0.6 30 61-94 15-44 (71)
89 2ecj_A Tripartite motif-contai 51.4 7 0.00024 26.5 1.9 31 61-95 15-45 (58)
90 3ng2_A RNF4, snurf, ring finge 51.3 3.6 0.00012 29.4 0.3 35 61-95 10-47 (71)
91 1x6e_A Zinc finger protein 24; 51.2 5.7 0.0002 28.0 1.4 12 61-72 14-25 (72)
92 2djb_A Polycomb group ring fin 50.8 6.1 0.00021 28.5 1.5 31 61-94 15-45 (72)
93 2csy_A Zinc finger protein 183 50.6 5.4 0.00018 29.5 1.2 31 61-95 15-45 (81)
94 1vq8_1 50S ribosomal protein L 50.6 4.8 0.00017 28.7 0.9 17 70-86 8-26 (57)
95 2ecy_A TNF receptor-associated 50.5 4.4 0.00015 28.7 0.7 30 62-95 16-45 (66)
96 2ctu_A Zinc finger protein 483 50.3 3.3 0.00011 28.9 -0.0 29 61-89 18-51 (73)
97 2k4x_A 30S ribosomal protein S 49.6 5.9 0.0002 28.0 1.2 26 61-86 18-45 (55)
98 1jm7_B BARD1, BRCA1-associated 49.6 7.8 0.00027 30.9 2.2 30 62-94 23-52 (117)
99 2y43_A E3 ubiquitin-protein li 49.4 4.2 0.00014 31.3 0.5 30 62-94 23-52 (99)
100 2yur_A Retinoblastoma-binding 49.3 6.1 0.00021 28.8 1.3 30 62-94 16-45 (74)
101 3j21_g 50S ribosomal protein L 48.3 7.2 0.00025 27.2 1.5 23 62-86 15-37 (51)
102 1e4u_A Transcriptional repress 48.3 9.1 0.00031 28.6 2.2 34 60-94 10-44 (78)
103 2ecn_A Ring finger protein 141 48.2 5.9 0.0002 28.3 1.1 30 61-95 15-44 (70)
104 2jrp_A Putative cytoplasmic pr 47.7 7.1 0.00024 29.9 1.5 29 53-86 12-40 (81)
105 4a0k_B E3 ubiquitin-protein li 47.7 4.3 0.00015 33.2 0.3 45 51-95 38-96 (117)
106 2cot_A Zinc finger protein 435 47.6 12 0.00041 26.6 2.7 14 59-72 16-29 (77)
107 2drp_A Protein (tramtrack DNA- 47.5 3.7 0.00013 28.4 -0.2 11 62-72 11-21 (66)
108 2xeu_A Ring finger protein 4; 46.8 4.5 0.00015 28.1 0.2 34 62-95 4-40 (64)
109 2l0b_A E3 ubiquitin-protein li 46.6 4.4 0.00015 31.0 0.2 34 61-95 40-73 (91)
110 2epr_A POZ-, at HOOK-, and zin 46.4 7.2 0.00025 25.1 1.2 11 62-72 13-23 (48)
111 1dl6_A Transcription factor II 46.0 9.4 0.00032 27.1 1.8 9 61-69 11-19 (58)
112 2ckl_A Polycomb group ring fin 45.9 4.8 0.00016 31.6 0.3 30 62-94 16-45 (108)
113 1gp8_A Protein (scaffolding pr 45.8 15 0.00052 24.1 2.6 31 325-355 9-39 (40)
114 2ct1_A Transcriptional repress 45.1 8.1 0.00028 27.5 1.4 12 61-72 15-26 (77)
115 3a43_A HYPD, hydrogenase nicke 43.9 7.1 0.00024 32.8 1.1 15 61-75 70-84 (139)
116 2pjw_H Uncharacterized protein 43.7 67 0.0023 24.8 6.5 53 138-202 32-84 (88)
117 3k1f_M Transcription initiatio 43.1 12 0.0004 33.0 2.3 17 53-69 12-29 (197)
118 3ztg_A E3 ubiquitin-protein li 42.3 5.6 0.00019 30.1 0.2 30 62-94 14-43 (92)
119 1qxf_A GR2, 30S ribosomal prot 42.3 8.9 0.00031 28.2 1.2 27 63-89 9-38 (66)
120 2ecw_A Tripartite motif-contai 42.2 13 0.00044 27.1 2.2 30 61-94 19-48 (85)
121 1g25_A CDK-activating kinase a 42.1 6.1 0.00021 27.8 0.3 33 63-95 5-38 (65)
122 4ayb_P DNA-directed RNA polyme 41.1 13 0.00045 25.5 1.8 24 63-86 5-32 (48)
123 2dnx_A Syntaxin-12; snare, HAB 40.8 1.5E+02 0.005 24.1 12.2 71 138-208 7-78 (130)
124 3j20_W 30S ribosomal protein S 40.1 10 0.00035 27.6 1.2 27 63-89 17-46 (63)
125 1wys_A Riken cDNA 2310008M20 p 39.8 13 0.00045 28.0 1.9 26 61-89 14-41 (75)
126 2wbt_A B-129; zinc finger; 2.7 39.8 9.3 0.00032 30.1 1.1 11 62-72 75-85 (129)
127 1v87_A Deltex protein 2; ring- 39.4 8.6 0.00029 30.2 0.9 33 63-95 27-73 (114)
128 2dmd_A Zinc finger protein 64, 38.9 13 0.00044 27.4 1.7 11 62-72 9-19 (96)
129 3h0g_L DNA-directed RNA polyme 38.3 15 0.00051 26.7 1.9 26 60-85 20-46 (63)
130 3iz6_X 40S ribosomal protein S 38.3 14 0.00047 28.6 1.8 27 63-89 38-67 (86)
131 2c2l_A CHIP, carboxy terminus 38.0 43 0.0015 30.0 5.5 30 61-94 208-237 (281)
132 1llm_C Chimera of ZIF23-GCN4; 38.0 12 0.0004 27.4 1.4 10 63-72 5-14 (88)
133 1z6u_A NP95-like ring finger p 37.8 7.4 0.00025 32.8 0.2 29 62-94 79-107 (150)
134 2dmi_A Teashirt homolog 3; zin 37.5 15 0.00052 28.1 2.1 9 63-71 21-29 (115)
135 2epq_A POZ-, at HOOK-, and zin 37.0 17 0.00059 22.7 1.9 11 62-72 11-21 (45)
136 1wil_A KIAA1045 protein; ring 36.9 12 0.00043 28.8 1.3 31 63-95 17-47 (89)
137 2dlq_A GLI-kruppel family memb 36.6 22 0.00075 27.2 2.9 11 62-72 8-18 (124)
138 1a1h_A QGSR zinc finger peptid 36.4 13 0.00044 26.9 1.4 7 66-72 11-17 (90)
139 2yt9_A Zinc finger-containing 36.0 12 0.00041 27.5 1.1 11 62-72 8-18 (95)
140 3vk6_A E3 ubiquitin-protein li 35.8 8.3 0.00028 30.8 0.2 30 61-93 1-30 (101)
141 2lt7_A Transcriptional regulat 35.6 12 0.00041 30.5 1.2 10 63-72 24-33 (133)
142 2xzm_6 RPS27E; ribosome, trans 35.5 14 0.00047 28.3 1.4 27 63-89 34-63 (81)
143 2ee8_A Protein ODD-skipped-rel 35.3 25 0.00086 26.3 3.0 12 61-72 17-28 (106)
144 2kmk_A Zinc finger protein GFI 35.0 14 0.00049 26.1 1.4 9 64-72 4-12 (82)
145 2akf_A Coronin-1A; coiled coil 35.0 47 0.0016 20.3 3.4 23 343-365 6-28 (32)
146 1f2i_G Fusion of N-terminal 17 35.0 14 0.0005 25.7 1.4 12 61-72 19-32 (73)
147 1wfe_A Riken cDNA 2310008M20 p 33.8 14 0.00048 28.5 1.2 26 61-89 25-52 (86)
148 2kwq_A Protein MCM10 homolog; 33.3 14 0.00049 28.9 1.2 37 50-87 36-75 (92)
149 3u5c_b RP61, YS20, 40S ribosom 33.2 18 0.00061 27.7 1.7 26 63-88 36-64 (82)
150 3dpl_R Ring-box protein 1; ubi 33.0 8.6 0.00029 30.6 -0.1 45 51-95 27-85 (106)
151 3hct_A TNF receptor-associated 32.8 10 0.00035 30.2 0.3 29 62-94 19-47 (118)
152 2yu4_A E3 SUMO-protein ligase 32.4 10 0.00035 29.1 0.2 29 62-94 8-37 (94)
153 1ard_A Yeast transcription fac 31.5 15 0.00052 20.0 0.8 10 63-72 4-13 (29)
154 2lvu_A Zinc finger and BTB dom 37.7 10 0.00034 20.5 0.0 10 63-72 4-13 (26)
155 3pfq_A PKC-B, PKC-beta, protei 31.2 34 0.0012 35.5 4.1 46 51-96 101-149 (674)
156 1dip_A Delta-sleep-inducing pe 31.1 30 0.001 25.9 2.5 24 343-366 15-38 (78)
157 2kvh_A Zinc finger and BTB dom 30.9 14 0.00046 20.1 0.5 10 63-72 5-14 (27)
158 3htk_C E3 SUMO-protein ligase 30.9 11 0.00038 35.2 0.2 29 62-93 182-210 (267)
159 1znf_A 31ST zinc finger from X 30.8 16 0.00056 19.6 0.9 10 63-72 3-12 (27)
160 4ap4_A E3 ubiquitin ligase RNF 30.7 10 0.00035 30.2 -0.1 35 60-94 71-108 (133)
161 1x6h_A Transcriptional repress 30.7 19 0.00064 25.7 1.4 11 62-72 16-26 (86)
162 2m0e_A Zinc finger and BTB dom 30.7 16 0.00055 19.7 0.9 10 63-72 4-13 (29)
163 2ghf_A ZHX1, zinc fingers and 30.5 8.8 0.0003 30.1 -0.5 12 61-72 18-29 (102)
164 4bbr_M Transcription initiatio 30.5 15 0.00052 35.3 1.1 37 53-89 12-54 (345)
165 2gmg_A Hypothetical protein PF 30.3 24 0.00083 28.3 2.1 23 62-84 68-91 (105)
166 2kvf_A Zinc finger and BTB dom 30.3 14 0.00048 20.1 0.5 10 63-72 5-14 (28)
167 1avy_A Fibritin, gpwac M; bact 30.1 49 0.0017 24.5 3.5 26 344-369 23-48 (74)
168 2apo_B Ribosome biogenesis pro 30.0 20 0.00068 25.8 1.4 25 61-89 6-30 (60)
169 3u5e_g 60S ribosomal protein L 29.8 26 0.00089 28.8 2.2 17 118-134 79-95 (121)
170 1tot_A CREB-binding protein; z 29.6 10 0.00036 26.3 -0.2 27 62-91 7-34 (52)
171 4a18_A RPL37, ribosomal protei 29.2 17 0.00057 28.4 0.9 16 71-86 8-25 (94)
172 1rmd_A RAG1; V(D)J recombinati 29.2 12 0.00043 29.5 0.2 29 62-94 24-52 (116)
173 1wim_A KIAA0161 protein; ring 28.9 16 0.00056 27.7 0.8 32 61-93 5-36 (94)
174 2dlk_A Novel protein; ZF-C2H2 28.9 24 0.00082 24.8 1.7 10 63-72 40-51 (79)
175 1paa_A Yeast transcription fac 28.9 18 0.00061 19.9 0.8 10 63-72 4-13 (30)
176 2y1n_A E3 ubiquitin-protein li 28.6 16 0.00055 35.9 0.9 30 62-95 333-362 (389)
177 2csh_A Zinc finger protein 297 28.5 21 0.00071 27.1 1.4 10 62-72 11-20 (110)
178 1wjp_A Zinc finger protein 295 28.0 19 0.00066 27.2 1.1 27 61-87 16-52 (107)
179 1rik_A E6APC1 peptide; E6-bind 27.9 16 0.00056 19.9 0.5 10 63-72 4-13 (29)
180 1e52_A Excinuclease ABC subuni 27.8 85 0.0029 22.6 4.5 39 321-359 21-59 (63)
181 2kvg_A Zinc finger and BTB dom 27.2 14 0.00048 20.3 0.1 10 63-72 5-14 (27)
182 2fc7_A ZZZ3 protein; structure 27.2 21 0.00071 27.2 1.1 30 63-93 23-56 (82)
183 4dac_A Computationally designe 27.0 80 0.0027 18.5 3.3 23 344-366 2-24 (28)
184 3j21_d 50S ribosomal protein L 26.9 25 0.00084 27.4 1.5 13 60-72 32-44 (89)
185 2d8v_A Zinc finger FYVE domain 26.9 30 0.001 25.4 1.9 31 58-93 5-36 (67)
186 1p7a_A BF3, BKLF, kruppel-like 26.8 20 0.00069 21.1 0.8 11 62-72 12-22 (37)
187 1klr_A Zinc finger Y-chromosom 26.7 21 0.00071 19.4 0.9 10 63-72 4-13 (30)
188 2kfq_A FP1; protein, de novo p 26.7 17 0.00059 20.9 0.5 10 63-72 4-13 (32)
189 3knv_A TNF receptor-associated 26.6 15 0.00052 30.5 0.3 29 62-94 32-60 (141)
190 2lvr_A Zinc finger and BTB dom 32.3 14 0.00048 20.4 0.0 10 63-72 5-14 (30)
191 2elu_A Zinc finger protein 406 26.2 16 0.00055 23.0 0.3 13 75-87 7-19 (37)
192 3iz5_l 60S ribosomal protein L 26.2 16 0.00055 28.6 0.3 7 80-86 19-25 (94)
193 2lvt_A Zinc finger and BTB dom 32.1 14 0.00048 20.3 0.0 10 63-72 4-13 (29)
194 3h0g_I DNA-directed RNA polyme 25.6 30 0.001 27.8 1.9 28 61-88 4-37 (113)
195 2m0d_A Zinc finger and BTB dom 25.3 19 0.00065 19.6 0.5 10 63-72 5-14 (30)
196 1rim_A E6APC2 peptide; E6-bind 25.1 23 0.00079 20.6 0.9 10 63-72 4-13 (33)
197 1nui_A DNA primase/helicase; z 24.9 21 0.00072 32.3 1.0 23 63-85 16-41 (255)
198 2m0f_A Zinc finger and BTB dom 24.9 20 0.00067 19.4 0.5 10 63-72 4-13 (29)
199 2lk0_A RNA-binding protein 5; 24.9 27 0.00092 21.6 1.1 21 63-85 7-27 (32)
200 3mq7_A Bone marrow stromal ant 24.7 65 0.0022 26.2 3.7 25 343-367 78-102 (121)
201 2eod_A TNF receptor-associated 24.6 19 0.00065 24.8 0.5 10 63-72 12-21 (66)
202 2elx_A Zinc finger protein 406 24.2 21 0.00071 20.5 0.5 11 62-72 8-18 (35)
203 2hf1_A Tetraacyldisaccharide-1 23.7 23 0.0008 26.0 0.8 29 62-96 9-37 (68)
204 2jr6_A UPF0434 protein NMA0874 23.6 24 0.00082 25.9 0.8 30 62-97 9-38 (68)
205 1yop_A KTI11P; zinc finger, me 23.5 21 0.00071 27.4 0.5 30 62-95 24-55 (83)
206 1pzw_A Transcription factor gr 23.5 1.5E+02 0.0051 21.1 5.4 21 114-134 46-66 (80)
207 2f42_A STIP1 homology and U-bo 23.4 18 0.00063 31.6 0.2 29 62-94 107-135 (179)
208 2elr_A Zinc finger protein 406 23.0 38 0.0013 19.5 1.6 11 62-72 10-20 (36)
209 2pk7_A Uncharacterized protein 22.3 28 0.00094 25.7 1.0 29 62-96 9-37 (69)
210 2xzm_9 RPS31E; ribosome, trans 22.1 29 0.001 30.6 1.3 26 62-87 114-141 (189)
211 2jsp_A Transcriptional regulat 22.1 17 0.00059 28.1 -0.2 17 62-79 22-38 (87)
212 2elt_A Zinc finger protein 406 21.9 24 0.00084 20.4 0.5 11 62-72 10-20 (36)
213 2zjr_Z 50S ribosomal protein L 21.9 32 0.0011 24.6 1.2 24 58-84 27-50 (60)
214 2l6l_A DNAJ homolog subfamily 21.8 21 0.00071 30.0 0.2 31 62-95 113-143 (155)
215 2jny_A Uncharacterized BCR; st 21.5 27 0.00094 25.6 0.8 29 62-96 11-39 (67)
216 3t6p_A Baculoviral IAP repeat- 21.2 34 0.0012 32.9 1.7 28 62-93 296-324 (345)
217 2rpc_A Zinc finger protein ZIC 21.1 38 0.0013 27.2 1.7 22 51-72 14-36 (155)
218 2els_A Zinc finger protein 406 21.1 26 0.00088 20.4 0.5 11 62-72 10-20 (36)
219 3iz5_i 60S ribosomal protein L 20.6 37 0.0013 27.8 1.5 12 60-71 40-51 (119)
220 1srk_A Zinc finger protein ZFP 20.4 27 0.00094 20.1 0.5 11 62-72 8-18 (35)
221 3hcs_A TNF receptor-associated 20.3 24 0.00082 29.8 0.3 29 62-94 19-47 (170)
222 3cng_A Nudix hydrolase; struct 20.3 30 0.001 29.5 0.9 24 62-85 4-33 (189)
223 2js4_A UPF0434 protein BB2007; 20.2 32 0.0011 25.3 1.0 29 62-96 9-37 (70)
224 2elp_A Zinc finger protein 406 20.2 28 0.00096 20.4 0.5 12 62-73 10-21 (37)
225 2elm_A Zinc finger protein 406 20.2 26 0.0009 20.8 0.4 11 62-72 10-20 (37)
226 2dip_A Zinc finger SWIM domain 20.1 39 0.0013 26.5 1.5 30 62-92 32-62 (98)
227 2elo_A Zinc finger protein 406 20.1 25 0.00085 20.6 0.3 11 62-72 10-20 (37)
228 2dkt_A Ring finger and CHY zin 20.1 34 0.0012 28.9 1.2 26 63-91 60-89 (143)
No 1
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=99.86 E-value=2.7e-22 Score=150.63 Aligned_cols=64 Identities=41% Similarity=0.689 Sum_probs=55.1
Q ss_pred cccccCCCccccc--cccccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHhh
Q psy4518 302 VSLLEAWSPAGTK--SVSSQDPLVQQITNIKQFIKEARMAHRYNEVASLENHLKELQEEYFRRQQE 365 (376)
Q Consensus 302 ~~~~~~~s~~~~~--~~e~~~~L~EQ~~~v~~~I~~A~~~rrfdEV~~L~~NL~EL~~ei~~~~~~ 365 (376)
+++.+||+|.++. ..+..|||+||||+|++||++|+++||||||.+|++||+||+.||+++++.
T Consensus 3 ~~~~~gW~~~~~~~~~~~~~dPL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q~~ 68 (69)
T 1z0k_B 3 LGSAEGWLPLSGGQGQSEDSDPLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQTE 68 (69)
T ss_dssp ----CCBCCCSSTTCSCCCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CccCCCCCcccccccccccCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566899998865 466678999999999999999999999999999999999999999999864
No 2
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.7e-20 Score=146.83 Aligned_cols=73 Identities=21% Similarity=0.400 Sum_probs=60.2
Q ss_pred CCCcccCCCCCcccccccccccccccccccccCccccccccCC-cccccccccccCCCcCCCCCCCcccccchHHHHHH
Q psy4518 52 IVPWLDGKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF-LPLNKARQILVEPELGESQLSASANSDLNLRLLES 129 (376)
Q Consensus 52 ~~~W~~d~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~-~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~~l~~ 129 (376)
.+.|++|.++..|+.|+++|++++||||||.||.|||+.||.+ ++++..+.. .|.....++|||..||..|..
T Consensus 5 ~~~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~-----~p~~~~~~~RVC~~C~~~l~~ 78 (84)
T 1x4u_A 5 SSGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGAT-----APEAQRETVFVCASCNQTLSK 78 (84)
T ss_dssp CCCSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCC-----CSSCSSCCEEECHHHHHHHHS
T ss_pred CCccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCceeccccccc-----CccccCCccEECHHHHHHHhc
Confidence 5689999999999999999999999999999999999999986 666654321 111124789999999998864
No 3
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=99.79 E-value=7.2e-20 Score=127.81 Aligned_cols=44 Identities=45% Similarity=0.769 Sum_probs=42.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH
Q psy4518 319 QDPLVQQITNIKQFIKEARMAHRYNEVASLENHLKELQEEYFRR 362 (376)
Q Consensus 319 ~~~L~EQ~~~v~~~I~~A~~~rrfdEV~~L~~NL~EL~~ei~~~ 362 (376)
.|||+||+|+|++||++|+++||||||.+|++||+||+.||+++
T Consensus 3 ~dPL~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~~ 46 (48)
T 3v1a_A 3 GSPLAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQQ 46 (48)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhh
Confidence 58999999999999999999999999999999999999999986
No 4
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=99.78 E-value=1.6e-19 Score=127.78 Aligned_cols=47 Identities=47% Similarity=0.761 Sum_probs=44.6
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHhh
Q psy4518 319 QDPLVQQITNIKQFIKEARMAHRYNEVASLENHLKELQEEYFRRQQE 365 (376)
Q Consensus 319 ~~~L~EQ~~~v~~~I~~A~~~rrfdEV~~L~~NL~EL~~ei~~~~~~ 365 (376)
.|||+||+|+|++||++|+++||||||.+|++||+||+.||++++++
T Consensus 4 ~dPL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~~~ 50 (51)
T 1yzm_A 4 GSPLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQTE 50 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47999999999999999999999999999999999999999999864
No 5
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.77 E-value=8.9e-20 Score=144.61 Aligned_cols=68 Identities=29% Similarity=0.602 Sum_probs=58.8
Q ss_pred cCCCcccCCCCCcccccccccccccccccccccCccccccccCC-cccccccccccCCCcCCCCCCCcccccchHHHHHH
Q psy4518 51 AIVPWLDGKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF-LPLNKARQILVEPELGESQLSASANSDLNLRLLES 129 (376)
Q Consensus 51 ~~~~W~~d~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~-~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~~l~~ 129 (376)
+.+.|++|.++..|+.|+++|++++||||||.||.|||+.||.+ ++++..+. ..++|||..||..|..
T Consensus 11 ~~~~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~-----------~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 11 SKGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGI-----------TEPERVCDACYLALRS 79 (84)
T ss_dssp CCSCCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTE-----------EEEEECCHHHHHHHHT
T ss_pred CCCccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCC-----------CCCCEECHHHHHHHhh
Confidence 46799999999999999999999999999999999999999997 45554321 2589999999998864
No 6
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.77 E-value=7.2e-20 Score=144.51 Aligned_cols=66 Identities=33% Similarity=0.705 Sum_probs=53.8
Q ss_pred CCcccCCCCCcccccccccccccccccccccCccccccccCC-cccccccccccCCCcCCCCCCCcccccchHHHHHHHH
Q psy4518 53 VPWLDGKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF-LPLNKARQILVEPELGESQLSASANSDLNLRLLESRE 131 (376)
Q Consensus 53 ~~W~~d~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~-~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~~l~~r~ 131 (376)
+.|++|.++..|+.|+++|++++||||||.||.|||+.||.. ++++.. ..++|||..||..|..+.
T Consensus 11 ~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~-------------~~~~RVC~~C~~~l~~~~ 77 (82)
T 2yw8_A 11 HAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSY-------------PKPVRVCDSCHTLLLQRC 77 (82)
T ss_dssp ----CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTC-------------SSCEEECHHHHHHTTC--
T ss_pred CccccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCC-------------CCcCEECHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999986 455432 368999999999987543
No 7
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.74 E-value=3.6e-19 Score=142.88 Aligned_cols=72 Identities=26% Similarity=0.594 Sum_probs=60.2
Q ss_pred cccCCCcccCCCCCcccccccccccccccccccccCccccccccCC-cccccccccccCCCcCCCCCCCcccccchHHHH
Q psy4518 49 EQAIVPWLDGKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF-LPLNKARQILVEPELGESQLSASANSDLNLRLL 127 (376)
Q Consensus 49 Eq~~~~W~~d~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~-~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~~l 127 (376)
....|.|++|.++..|+.|+++|++++||||||.||.|||+.||.+ ++++.. +.++|||..||..|
T Consensus 8 ~~~~p~W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~-------------~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 8 GQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL-------------EKEARVCVVCYETI 74 (90)
T ss_dssp TTSCCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTT-------------TEEEEECHHHHHHH
T ss_pred CCCCCcCcccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCC-------------CCCCeECHHHHHHH
Confidence 3456799999999999999999999999999999999999999996 444432 25899999999999
Q ss_pred HHHHHH
Q psy4518 128 ESREVL 133 (376)
Q Consensus 128 ~~r~~~ 133 (376)
.....+
T Consensus 75 ~~~~~~ 80 (90)
T 3t7l_A 75 SKAQAF 80 (90)
T ss_dssp HHHC--
T ss_pred HHHhhh
Confidence 765443
No 8
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=99.74 E-value=1.5e-18 Score=125.97 Aligned_cols=48 Identities=33% Similarity=0.533 Sum_probs=45.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHhh
Q psy4518 318 SQDPLVQQITNIKQFIKEARMAHRYNEVASLENHLKELQEEYFRRQQE 365 (376)
Q Consensus 318 ~~~~L~EQ~~~v~~~I~~A~~~rrfdEV~~L~~NL~EL~~ei~~~~~~ 365 (376)
..|||+||||+|++||++|+++||||||.+|++||+||+.||++++.+
T Consensus 10 ~~dpL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~~~~ 57 (59)
T 1z0j_B 10 EEELLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQKGG 57 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccchHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367999999999999999999999999999999999999999999873
No 9
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.74 E-value=4.3e-19 Score=150.80 Aligned_cols=65 Identities=28% Similarity=0.610 Sum_probs=56.7
Q ss_pred cCCCcccCCCCCcccccccccccccccccccccCccccccccCC-cccccccccccCCCcCCCCCCCcccccchHHHHH
Q psy4518 51 AIVPWLDGKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF-LPLNKARQILVEPELGESQLSASANSDLNLRLLE 128 (376)
Q Consensus 51 ~~~~W~~d~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~-~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~~l~ 128 (376)
..+.|++|.++..|+.|+++|++++||||||.||.|||+.||.+ ++++.. ..++|||..||..|.
T Consensus 59 ~~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~-------------~~p~RVC~~C~~~l~ 124 (125)
T 1joc_A 59 LNRKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSS-------------KKPVRVCDACFNDLQ 124 (125)
T ss_dssp HHCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTC-------------SSCEEECHHHHHHTT
T ss_pred CCCccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCCC-------------CCCCEeCHHHHHHhc
Confidence 46789999999999999999999999999999999999999996 344321 369999999998763
No 10
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.72 E-value=1.7e-18 Score=133.64 Aligned_cols=64 Identities=30% Similarity=0.632 Sum_probs=53.4
Q ss_pred CCCcccCCCCCcccccccccccccccccccccCccccccccCC-cccccccccccCCCcCCCCCCCcccccchHHHHHH
Q psy4518 52 IVPWLDGKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF-LPLNKARQILVEPELGESQLSASANSDLNLRLLES 129 (376)
Q Consensus 52 ~~~W~~d~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~-~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~~l~~ 129 (376)
.+.|++|. .|+.|+++|++++||||||.||.|||+.||.. ++++..+. ..++|||..||..+..
T Consensus 5 ~p~W~~~~---~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~-----------~~~~RVC~~C~~~l~~ 69 (73)
T 1vfy_A 5 PADWIDSD---ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGI-----------YEPVRVCDSCFEDYEF 69 (73)
T ss_dssp --CCCCCS---BCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTE-----------EEEEEECHHHHHHHHH
T ss_pred CCcCccCC---cccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCC-----------CCCCEECHHHHHHHHH
Confidence 56899985 89999999999999999999999999999985 66665432 2489999999998754
No 11
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=99.67 E-value=1.1e-17 Score=140.75 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=53.7
Q ss_pred CcccCCCCCcccccccccccccccccccccCccccccccCCcccccccccccCCCcCCCCCCCcccccchHHHHHHHHHH
Q psy4518 54 PWLDGKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFLPLNKARQILVEPELGESQLSASANSDLNLRLLESREVL 133 (376)
Q Consensus 54 ~W~~d~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~~l~~r~~~ 133 (376)
.|.||..+..|+.|+.+|++++||||||.||.|||+.||.... ..+|||..||..+......
T Consensus 12 ~~~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~------------------~~vRVC~~C~~~~~~~~~~ 73 (120)
T 1y02_A 12 FPSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG------------------NGPRLCLLCQRFRATAFQR 73 (120)
T ss_dssp --------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----------------------CCEEHHHHHHHHTTTCH
T ss_pred CCcCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC------------------CCceECHHHHHHHhccccH
Confidence 6899999999999999999999999999999999999998632 1579999999987643222
Q ss_pred hhhcCCCchhHHHHHHHH
Q psy4518 134 KESRNSRPLICDLYDALM 151 (376)
Q Consensus 134 ~~~~~~~p~i~~~Ye~L~ 151 (376)
......++.+++.|..+.
T Consensus 74 ~~l~~lkvkdL~~yL~~~ 91 (120)
T 1y02_A 74 EELMKMKVKDLRDYLSLH 91 (120)
T ss_dssp HHHHTSCHHHHHHHHHHT
T ss_pred HHHhcccHHHHHHHHHhC
Confidence 222234455666666654
No 12
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.65 E-value=1.6e-17 Score=132.71 Aligned_cols=63 Identities=21% Similarity=0.433 Sum_probs=52.8
Q ss_pred CCCCCcccccccccccccccccccccCccccccccCC-cccccccccccCCCcCCCCCCCcccccchHHHHHHHHH
Q psy4518 58 GKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF-LPLNKARQILVEPELGESQLSASANSDLNLRLLESREV 132 (376)
Q Consensus 58 d~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~-~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~~l~~r~~ 132 (376)
+.++..|+.|+++|++++||||||.||.|||+.||.+ ++++..+ ..++|||..||..|.....
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g------------~~~~RVC~~C~~~l~~~~~ 69 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAG------------NTQQKVCKQCHTILTRGSS 69 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTT------------SEEEEECHHHHHHHHHCCC
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccC------------CCcCEECHHHHHHHHhccc
Confidence 3456799999999999999999999999999999986 5655432 2589999999999986543
No 13
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.63 E-value=6.1e-17 Score=150.00 Aligned_cols=65 Identities=32% Similarity=0.685 Sum_probs=54.8
Q ss_pred cCCCcccCCCCCcccccccccccccccccccccCccccccccCC-cccccccccccCCCcCCCCCCCcccccchHHHHHH
Q psy4518 51 AIVPWLDGKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF-LPLNKARQILVEPELGESQLSASANSDLNLRLLES 129 (376)
Q Consensus 51 ~~~~W~~d~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~-~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~~l~~ 129 (376)
..+.|+++. .|+.|+++|++++||||||.||.|||+.||.+ ++++..+. ..++|||..||..|.+
T Consensus 154 ~~~~W~~~~---~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~-----------~~~~RvC~~C~~~l~~ 219 (220)
T 1dvp_A 154 TAPNWADGR---VCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGI-----------EKEVRVCDGCFAALQR 219 (220)
T ss_dssp CCCCCCCCS---BCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTE-----------EEEEEECHHHHHHHHH
T ss_pred ccccCCCCC---ccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCC-----------CCCCEeCHHHHHHHhc
Confidence 367899874 89999999999999999999999999999996 55554322 3599999999998753
No 14
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.61 E-value=7.4e-17 Score=150.17 Aligned_cols=68 Identities=26% Similarity=0.573 Sum_probs=55.7
Q ss_pred ccCCCcccCCCCCcccccccccccccccccccccCccccccccCC-cccccccccccCCCcCCCCCCCcccccchHHHHH
Q psy4518 50 QAIVPWLDGKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF-LPLNKARQILVEPELGESQLSASANSDLNLRLLE 128 (376)
Q Consensus 50 q~~~~W~~d~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~-~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~~l~ 128 (376)
...|.|+++. .|+.|+++|++++||||||.||.|||+.||.. ++++..+. ..++|||..||..|.
T Consensus 156 ~~~p~W~~~~---~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~-----------~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 156 ERAPDWVDAE---ECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGI-----------EKEVRVCEPCYEQLN 221 (226)
T ss_dssp CCCCCCCCCS---BCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTE-----------EEEEEECHHHHHHHC
T ss_pred ccccccccCC---CCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCC-----------CCCCEeCHHHHHHhh
Confidence 3478899875 89999999999999999999999999999996 55554322 258999999999986
Q ss_pred HHH
Q psy4518 129 SRE 131 (376)
Q Consensus 129 ~r~ 131 (376)
++.
T Consensus 222 ~~~ 224 (226)
T 3zyq_A 222 RKA 224 (226)
T ss_dssp C--
T ss_pred hhc
Confidence 543
No 15
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=8.3e-16 Score=154.75 Aligned_cols=68 Identities=28% Similarity=0.507 Sum_probs=0.0
Q ss_pred ccCCCcccCCCCCcccccccccccccccccccccCccccccccCC-cccccccccccCCCcCCCCCCCcccccchHHHHH
Q psy4518 50 QAIVPWLDGKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF-LPLNKARQILVEPELGESQLSASANSDLNLRLLE 128 (376)
Q Consensus 50 q~~~~W~~d~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~-~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~~l~ 128 (376)
...|.|++|..+..|+.|+.+|+++.||||||.||.|||+.||.. ++++.. ...++|||..||..|.
T Consensus 364 ~~~p~w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~------------~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 364 ERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYL------------KDRMAKVCDGCFGELK 431 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCcCCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCC------------CCCcCEecHHHHHHHH
Confidence 356789999999999999999999999999999999999999985 555422 1368999999999886
Q ss_pred H
Q psy4518 129 S 129 (376)
Q Consensus 129 ~ 129 (376)
.
T Consensus 432 ~ 432 (434)
T 3mpx_A 432 K 432 (434)
T ss_dssp -
T ss_pred h
Confidence 4
No 16
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=98.29 E-value=2.8e-07 Score=91.81 Aligned_cols=72 Identities=11% Similarity=0.205 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhccCCCCchhhhhccccCCCcccCCCCCccccccccc-ccccccccccccCccccccccCCcc
Q psy4518 22 HEINKLIIRLDKLLTNMPIDPIKKKNHEQAIVPWLDGKDVPRCPNCSRSF-NFAKRQHHCRLCGCIMCHDCSFFLP 96 (376)
Q Consensus 22 le~~~l~~RL~kLl~~~~~~~~~~~~~Eq~~~~W~~d~~v~~C~~C~~~F-~~~~RrHHCR~CG~vvC~~CS~~~~ 96 (376)
-+..+|...|.+.+..+..... ........|.++..++.|..|+..| |+++++|||+.||.+||..|+..++
T Consensus 321 ~ek~~W~~~i~~ai~~~~~~~~---~~~~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 321 ELKKKWMEQFEMAISNIYPENA---TANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTT---TGGGCCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC
T ss_pred HHHHHHHHHHHHHHhhhhhccc---cCCCCCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC
Confidence 4667888888888765432211 2234556799999999999999999 5999999999999999999998765
No 17
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=96.88 E-value=0.0005 Score=71.67 Aligned_cols=72 Identities=11% Similarity=0.220 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhccCCCCchhhhhccccCCCcccCCCCCccccccccc-ccccccccccccCccccccccCCcc
Q psy4518 22 HEINKLIIRLDKLLTNMPIDPIKKKNHEQAIVPWLDGKDVPRCPNCSRSF-NFAKRQHHCRLCGCIMCHDCSFFLP 96 (376)
Q Consensus 22 le~~~l~~RL~kLl~~~~~~~~~~~~~Eq~~~~W~~d~~v~~C~~C~~~F-~~~~RrHHCR~CG~vvC~~CS~~~~ 96 (376)
-+.++|...|.+.++++..... ..-.....|.....++.|..|+..| |++.+.|||+.||.+||..|+..++
T Consensus 493 eeK~~Wi~~I~~ai~~~~~~~~---~~~~H~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v~ 565 (587)
T 3ky9_A 493 ELKKKWMEQFEMAISNIYPENA---TANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRVP 565 (587)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTT---TGGGCCEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGSC
T ss_pred HHHHHHHHHHHHHhhhhccccc---cccCCceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhcCC
Confidence 3677888888888776543211 1122344577778899999999988 7999999999999999999988763
No 18
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=96.54 E-value=0.0019 Score=56.04 Aligned_cols=50 Identities=18% Similarity=0.438 Sum_probs=41.5
Q ss_pred CCcccccccccc-cccccccccccCccccccccCCcccccccccccCCCcCCCCCCCcccccchHHHH
Q psy4518 61 VPRCPNCSRSFN-FAKRQHHCRLCGCIMCHDCSFFLPLNKARQILVEPELGESQLSASANSDLNLRLL 127 (376)
Q Consensus 61 v~~C~~C~~~F~-~~~RrHHCR~CG~vvC~~CS~~~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~~l 127 (376)
...|..|+++|+ +.++.+-|.-|+.-||..|..+.+ ....=+|..|...-
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~-----------------~~~~W~C~vC~k~r 118 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHP-----------------EEQGWLCDPCHLAR 118 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCS-----------------SSSSCEEHHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccccC-----------------CCCcEeeHHHHHHH
Confidence 458999999999 568999999999999999985432 13668999998764
No 19
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=96.40 E-value=0.0029 Score=53.77 Aligned_cols=55 Identities=20% Similarity=0.359 Sum_probs=43.8
Q ss_pred CCCcccccccccc-cccccccccccCccccccccCCcccccccccccCCCcCCCCCCCcccccchHHHHH
Q psy4518 60 DVPRCPNCSRSFN-FAKRQHHCRLCGCIMCHDCSFFLPLNKARQILVEPELGESQLSASANSDLNLRLLE 128 (376)
Q Consensus 60 ~v~~C~~C~~~F~-~~~RrHHCR~CG~vvC~~CS~~~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~~l~ 128 (376)
....|..|+++|+ +.++.|-|.-|..-||..|..+.+... ....=+|..|...-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~--------------~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNR--------------PHPVWLCKICLEQRE 109 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSS--------------SSCCEEEHHHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCC--------------CccceechhhHHHHH
Confidence 4568999999999 558899999999999999988754211 246689999987643
No 20
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=92.64 E-value=0.089 Score=39.85 Aligned_cols=39 Identities=28% Similarity=0.725 Sum_probs=29.1
Q ss_pred cccCCCcccCC-CCCcccccccccccccccccccccCcccccc
Q psy4518 49 EQAIVPWLDGK-DVPRCPNCSRSFNFAKRQHHCRLCGCIMCHD 90 (376)
Q Consensus 49 Eq~~~~W~~d~-~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~ 90 (376)
+...++|.+.. ....|..|.+.-+++ ..+|| ||.+||..
T Consensus 12 ~~~~~~~~~~k~~~~RC~~C~kkvgL~--~f~Cr-Cg~~FCs~ 51 (74)
T 1wfp_A 12 DSAAAPLDPPKSTATRCLSCNKKVGVT--GFKCR-CGSTFCGT 51 (74)
T ss_dssp CCCCCCSCCTTCCCCBCSSSCCBCTTT--CEECT-TSCEECTT
T ss_pred cccccccccCcccCccchhhcCccccc--ceEec-cCCEeccc
Confidence 44445564433 467999999998887 78995 99999963
No 21
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.45 E-value=0.024 Score=39.25 Aligned_cols=34 Identities=32% Similarity=0.656 Sum_probs=28.7
Q ss_pred CCcccCCCCCccccccccccc--ccccccccccCccc
Q psy4518 53 VPWLDGKDVPRCPNCSRSFNF--AKRQHHCRLCGCIM 87 (376)
Q Consensus 53 ~~W~~d~~v~~C~~C~~~F~~--~~RrHHCR~CG~vv 87 (376)
+.|++. ..-.||-|+..|++ ..|+|-|..||..|
T Consensus 5 ~~~~~~-~~~~CPrCn~~f~~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 5 SSGQDG-GRKICPRCNAQFRVTEALRGHMCYCCPEMV 40 (49)
T ss_dssp SSSCCS-SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred cccccC-CceeCCcccccccchHHHHhhhhhcCcchh
Confidence 468887 56799999999995 47999999999876
No 22
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=92.16 E-value=0.11 Score=39.34 Aligned_cols=30 Identities=27% Similarity=0.732 Sum_probs=24.7
Q ss_pred CCCCCcccccccccccccccccccccCcccccc
Q psy4518 58 GKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHD 90 (376)
Q Consensus 58 d~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~ 90 (376)
......|..|.+..+++ ...|| ||.+||..
T Consensus 22 k~~~nRC~~CrKkvgL~--gf~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 22 KPKKNRCFMCRKKVGLT--GFDCR-CGNLFCGL 51 (74)
T ss_dssp CSCTTBCSSSCCBCGGG--CEECT-TSCEECSS
T ss_pred CCcCCcChhhCCccccc--CeecC-CCCEechh
Confidence 33456899999998877 48999 99999963
No 23
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=91.65 E-value=0.019 Score=41.79 Aligned_cols=40 Identities=20% Similarity=0.534 Sum_probs=29.3
Q ss_pred cccCCCCCcccccccccccccccccccccCccccccccCCc
Q psy4518 55 WLDGKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 55 W~~d~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
|........|..|++.|.-.. +..|..|+.+||.+|=.++
T Consensus 9 ~~~~~~~~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fi 48 (59)
T 1z60_A 9 LEEYNGERFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFV 48 (59)
T ss_dssp HHHHCSCCEETTTTEECTTSE-EECCTTTTCCBCHHHHHTT
T ss_pred ccccCCCCcccccCcccCCCc-cEECCccCcCcccchhHHH
Confidence 444443346999999995322 3789999999999996654
No 24
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=91.57 E-value=0.15 Score=39.71 Aligned_cols=34 Identities=29% Similarity=0.682 Sum_probs=26.7
Q ss_pred Cccc-CCCCCcccccccccccccccccccccCccccc
Q psy4518 54 PWLD-GKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCH 89 (376)
Q Consensus 54 ~W~~-d~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~ 89 (376)
+|.. ......|..|.+.-+++ -..+|| ||.+||.
T Consensus 17 ~~~~~k~~~~rC~~C~kkvgl~-~~f~Cr-Cg~~FC~ 51 (85)
T 1wff_A 17 PLQTKKKIMKHCFLCGKKTGLA-TSFECR-CGNNFCA 51 (85)
T ss_dssp CCCCCCCCCCBCSSSCCBCSSS-SCEECT-TCCEECT
T ss_pred ccccCcccCccchhhCCeeccc-CCeEcC-CCCEecc
Confidence 5553 34567999999998876 358998 9999996
No 25
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=91.47 E-value=0.1 Score=38.41 Aligned_cols=28 Identities=29% Similarity=0.845 Sum_probs=23.7
Q ss_pred CCCcccccccccccccccccccccCcccccc
Q psy4518 60 DVPRCPNCSRSFNFAKRQHHCRLCGCIMCHD 90 (376)
Q Consensus 60 ~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~ 90 (376)
....|..|.+.-+++ ...|| ||.+||..
T Consensus 14 ~~~rC~~C~kkvgl~--~f~Cr-Cg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT--GFMCR-CGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTT--CEECS-SSCEECTT
T ss_pred cCCcChhhCCccCcc--CEEee-cCCEeccc
Confidence 346899999998877 78996 99999963
No 26
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=89.16 E-value=0.3 Score=35.96 Aligned_cols=29 Identities=24% Similarity=0.758 Sum_probs=24.0
Q ss_pred CCCCcccccccccccccccccccccCcccccc
Q psy4518 59 KDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHD 90 (376)
Q Consensus 59 ~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~ 90 (376)
.....|..|.+..+++ ...| .||.+||..
T Consensus 13 ~~~~rC~~C~kkvgl~--~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVM--GFKC-KCGSTFCGS 41 (64)
T ss_dssp CCSCSCTTTCCCCTTS--CEEC-TTSCEECSS
T ss_pred CcCCcChhhCCccccc--CeEe-ecCCEeccc
Confidence 3456899999998877 7899 599999963
No 27
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.22 E-value=0.31 Score=36.20 Aligned_cols=37 Identities=22% Similarity=0.536 Sum_probs=27.4
Q ss_pred CCcccC-CCCCcccccccccccccc-cccccccCcccccc
Q psy4518 53 VPWLDG-KDVPRCPNCSRSFNFAKR-QHHCRLCGCIMCHD 90 (376)
Q Consensus 53 ~~W~~d-~~v~~C~~C~~~F~~~~R-rHHCR~CG~vvC~~ 90 (376)
++|.+. .....|..|.+.-+++.. -.+| .||.+||..
T Consensus 6 p~~~~~~~~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 6 SGSRSKQKSRRRCFQCQTKLELVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp CSCCCSCSCTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTT
T ss_pred CCCccCCccCCcchhhCCeecccccCceEe-cCCCEehhc
Confidence 445443 346799999999887643 4789 799999963
No 28
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.11 E-value=0.38 Score=36.63 Aligned_cols=34 Identities=26% Similarity=0.825 Sum_probs=30.3
Q ss_pred CCcccccccccc-cccccccccccCccccccccCC
Q psy4518 61 VPRCPNCSRSFN-FAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 61 v~~C~~C~~~F~-~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
...|..|+.+|+ +++|---|+-|-.-||.+|-.+
T Consensus 25 ~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~ 59 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQ 59 (76)
T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEE
T ss_pred ccchhhhCccccccccCCCcCcccChhhccccccc
Confidence 358999999999 6789999999999999999654
No 29
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=83.81 E-value=1 Score=43.22 Aligned_cols=64 Identities=22% Similarity=0.379 Sum_probs=37.6
Q ss_pred CCccccccccc--cccc--------ccccccccC------ccccccccCCcccccccccccCC--CcCCCCCCCcccccc
Q psy4518 61 VPRCPNCSRSF--NFAK--------RQHHCRLCG------CIMCHDCSFFLPLNKARQILVEP--ELGESQLSASANSDL 122 (376)
Q Consensus 61 v~~C~~C~~~F--~~~~--------RrHHCR~CG------~vvC~~CS~~~~l~~~~~~~~~~--~~~~~~~~~vRvC~~ 122 (376)
...||.||..= +++. |..||.+|| ++-|..|-+.-.+... ++.+ .++......+=+|..
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~~l~y~---~~e~~~~~~~~~~~r~e~C~~ 258 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYL---SLEHDGQPAEKAVLRAETCPS 258 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCSCCEEE---CCCC-CCCSTTCSEEEEEETT
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCCCeeEE---EecCccccCCCcceEEEEccc
Confidence 44899999843 3332 578999998 4689999764222211 0111 000111235559999
Q ss_pred hHHHH
Q psy4518 123 NLRLL 127 (376)
Q Consensus 123 C~~~l 127 (376)
|...+
T Consensus 259 C~~Yl 263 (309)
T 2fiy_A 259 CQGYL 263 (309)
T ss_dssp TTEEE
T ss_pred ccchH
Confidence 98776
No 30
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=82.72 E-value=0.55 Score=36.25 Aligned_cols=37 Identities=22% Similarity=0.555 Sum_probs=27.6
Q ss_pred CCCCCccccccccccc--ccccccccccCccccccccCC
Q psy4518 58 GKDVPRCPNCSRSFNF--AKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 58 d~~v~~C~~C~~~F~~--~~RrHHCR~CG~vvC~~CS~~ 94 (376)
+..+..||.|+..|.. ...+..|..||..||..|...
T Consensus 22 ~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~ 60 (86)
T 2ct7_A 22 DPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQ 60 (86)
T ss_dssp CCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSB
T ss_pred CCCEeECcCCCchheecCCCCceEeCCCCCccccccCCc
Confidence 4445579999986642 245678999999999999753
No 31
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=81.88 E-value=1.4 Score=35.14 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=31.8
Q ss_pred cccccccccccccccccccccCccccccccCCcccccccccccCCCcCCCCCCCcccccchHHHHHH
Q psy4518 63 RCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFLPLNKARQILVEPELGESQLSASANSDLNLRLLES 129 (376)
Q Consensus 63 ~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~~l~~ 129 (376)
.|++|...|.--. --.||.+||..|...+.- .....|..|...+..
T Consensus 17 ~C~iC~~~~~~p~----~~~CgH~fC~~Ci~~~~~-----------------~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 17 QCGICMEILVEPV----TLPCNHTLCKPCFQSTVE-----------------KASLCCPFCRRRVSS 62 (115)
T ss_dssp BCTTTCSBCSSCE----ECTTSCEECHHHHCCCCC-----------------TTTSBCTTTCCBCHH
T ss_pred CCccCCcccCcee----EcCCCCHHhHHHHHHHHh-----------------HCcCCCCCCCcccCc
Confidence 7999998876211 126999999999764321 123679999877754
No 32
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=79.65 E-value=1.1 Score=32.41 Aligned_cols=51 Identities=24% Similarity=0.490 Sum_probs=37.6
Q ss_pred CCCccccccc-ccccccccccccccCccccccccCCcccccccccccCCCcCCCCCCCcccccchHH
Q psy4518 60 DVPRCPNCSR-SFNFAKRQHHCRLCGCIMCHDCSFFLPLNKARQILVEPELGESQLSASANSDLNLR 125 (376)
Q Consensus 60 ~v~~C~~C~~-~F~~~~RrHHCR~CG~vvC~~CS~~~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~ 125 (376)
+...|.+|.+ +|.- --=|+|-.|-.-||..|..++++.. ++-+-||..|..
T Consensus 8 d~~~C~iC~KTKFAD-G~Gh~C~yCk~r~CaRCGg~v~lr~--------------~k~~WvC~lC~k 59 (62)
T 2a20_A 8 DAPTCGICHKTKFAD-GCGHNCSYCQTKFCARCGGRVSLRS--------------NKVMWVCNLCRK 59 (62)
T ss_dssp CCCCCSSSSCSCCCS-SCCEEBTTTCCEECTTSEEEEESST--------------TCEEEEEHHHHH
T ss_pred Ccchhhhhccceecc-CCCccccccCCeeecccCCEeeecC--------------CeEEEEehhhhh
Confidence 3458999998 4531 2358999999999999998887643 245568888854
No 33
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=79.08 E-value=0.8 Score=34.28 Aligned_cols=28 Identities=25% Similarity=0.663 Sum_probs=20.4
Q ss_pred CCCccccccccccccc-ccccccccCc-cc
Q psy4518 60 DVPRCPNCSRSFNFAK-RQHHCRLCGC-IM 87 (376)
Q Consensus 60 ~v~~C~~C~~~F~~~~-RrHHCR~CG~-vv 87 (376)
..-.|+.|+..|.+.. -.-||+.||. |+
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 3447999999998653 3467888887 54
No 34
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=78.40 E-value=0.54 Score=38.57 Aligned_cols=29 Identities=21% Similarity=0.589 Sum_probs=21.3
Q ss_pred Cccccccc-ccc-cccccccccccCcccccc
Q psy4518 62 PRCPNCSR-SFN-FAKRQHHCRLCGCIMCHD 90 (376)
Q Consensus 62 ~~C~~C~~-~F~-~~~RrHHCR~CG~vvC~~ 90 (376)
..||.|++ .+- .....+||+.||.+|-..
T Consensus 61 ytCPfCGk~~vKR~avGIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 61 HACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 91 (116)
T ss_dssp EECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred CcCCCCCCceeEecCceeEECCCCCCEEECC
Confidence 47999998 332 344578999999998554
No 35
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=76.86 E-value=1 Score=34.68 Aligned_cols=32 Identities=28% Similarity=0.747 Sum_probs=24.8
Q ss_pred cccccccccccccccccccccCcc-----ccccccCC
Q psy4518 63 RCPNCSRSFNFAKRQHHCRLCGCI-----MCHDCSFF 94 (376)
Q Consensus 63 ~C~~C~~~F~~~~RrHHCR~CG~v-----vC~~CS~~ 94 (376)
.||.|+++-.+..+.+||..||.- +|.+|-..
T Consensus 4 ~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~ 40 (81)
T 2jrp_A 4 TCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQP 40 (81)
T ss_dssp CCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSC
T ss_pred CCCCCCCccccCCCceECccccccCCCcccCcchhhH
Confidence 688888888877788888888875 67777553
No 36
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=76.63 E-value=1.2 Score=30.25 Aligned_cols=35 Identities=20% Similarity=0.499 Sum_probs=25.6
Q ss_pred CCcccccccccccccccccccccCccccccccCCc
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
...|++|...|.-.........||.+||..|...+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 39 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEM 39 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHH
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHH
Confidence 35799999988543344455679999999997643
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=74.98 E-value=0.064 Score=46.24 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=31.4
Q ss_pred cccccccccccccccccccccCccccccccCCcccccccccccCCCcCCCCCCCcccccchHHHHH
Q psy4518 63 RCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFLPLNKARQILVEPELGESQLSASANSDLNLRLLE 128 (376)
Q Consensus 63 ~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~~l~~~~~~~~~~~~~~~~~~~vRvC~~C~~~l~ 128 (376)
.|++|...|.- -..+..||.+||..|...+.. .....|..|...+.
T Consensus 56 ~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~-----------------~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 56 MCPICLDMLKN---TMTTKECLHRFCADCIITALR-----------------SGNKECPTCRKKLV 101 (165)
T ss_dssp BCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHH-----------------TTCCBCTTTCCBCC
T ss_pred CCcccChHhhC---cCEeCCCCChhHHHHHHHHHH-----------------hCcCCCCCCCCcCC
Confidence 79999887752 233458999999999765321 12356888876653
No 38
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=73.03 E-value=1.1 Score=35.56 Aligned_cols=33 Identities=30% Similarity=0.853 Sum_probs=28.0
Q ss_pred CcccccccccccccccccccccCcc-----ccccccCC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCI-----MCHDCSFF 94 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~v-----vC~~CS~~ 94 (376)
..||.|+++..+....+||..|+.- +|.+|-..
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~ 70 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQP 70 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSB
T ss_pred ccCccCCCcceecCCEEECccccchhhccccCcchhhH
Confidence 4899999999988889999999986 67788654
No 39
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.94 E-value=1.6 Score=32.84 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=31.6
Q ss_pred cCCCcccCCCCCcccccccccccc---------ccc-c-cccccCccccccccCCc
Q psy4518 51 AIVPWLDGKDVPRCPNCSRSFNFA---------KRQ-H-HCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 51 ~~~~W~~d~~v~~C~~C~~~F~~~---------~Rr-H-HCR~CG~vvC~~CS~~~ 95 (376)
.+..|..|.+...|++|...|.-. ... . .-..||.+|+..|...+
T Consensus 5 ~~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~W 60 (81)
T 2ecl_A 5 SSGMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLW 60 (81)
T ss_dssp CCCCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHH
T ss_pred eeEEeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHH
Confidence 466788888888999999999531 111 1 11249999999996643
No 40
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=72.80 E-value=1 Score=31.54 Aligned_cols=26 Identities=27% Similarity=0.704 Sum_probs=17.6
Q ss_pred Cccccccccccc---c------cccccccccCccc
Q psy4518 62 PRCPNCSRSFNF---A------KRQHHCRLCGCIM 87 (376)
Q Consensus 62 ~~C~~C~~~F~~---~------~RrHHCR~CG~vv 87 (376)
-.|+.|++.|+. + .+.+.|..||..|
T Consensus 15 ~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f 49 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEV 49 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBC
T ss_pred ccCCCCCchhccHHHhHhhcCCCCCEECCCCCCcc
Confidence 479999999972 2 2345566666655
No 41
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=72.20 E-value=2.1 Score=29.12 Aligned_cols=34 Identities=15% Similarity=0.342 Sum_probs=23.9
Q ss_pred CcccccccccccccccccccccCccccccccCCc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
..|++|...|.--..-.....||.+||..|...+
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 39 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMW 39 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHT
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHH
Confidence 4799999988643322233359999999997543
No 42
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=71.78 E-value=2 Score=32.79 Aligned_cols=17 Identities=29% Similarity=0.688 Sum_probs=12.5
Q ss_pred ccCCCCCcccccccccc
Q psy4518 56 LDGKDVPRCPNCSRSFN 72 (376)
Q Consensus 56 ~~d~~v~~C~~C~~~F~ 72 (376)
-.......|+.|++.|.
T Consensus 23 ~~~~~~h~C~~Cgk~F~ 39 (85)
T 2lv2_A 23 SASAECHLCPVCGESFA 39 (85)
T ss_dssp CCCCTTEECTTSCCEES
T ss_pred CCCCCCEECCCCCCCcC
Confidence 33444567999999997
No 43
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=71.22 E-value=1.1 Score=34.69 Aligned_cols=28 Identities=21% Similarity=0.554 Sum_probs=21.2
Q ss_pred cccccccc--cccccccccccccCcccccc
Q psy4518 63 RCPNCSRS--FNFAKRQHHCRLCGCIMCHD 90 (376)
Q Consensus 63 ~C~~C~~~--F~~~~RrHHCR~CG~vvC~~ 90 (376)
.||.|+.. |..-....+|..||..|...
T Consensus 29 ~Cp~CG~~~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 29 ACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp ECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred cCCCCCCcceeccCCCeEECCCCCCEecCC
Confidence 79999983 33445678999999988654
No 44
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=70.92 E-value=2.5 Score=30.12 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=13.0
Q ss_pred cccCCCCCcccccccccc
Q psy4518 55 WLDGKDVPRCPNCSRSFN 72 (376)
Q Consensus 55 W~~d~~v~~C~~C~~~F~ 72 (376)
...+...-.|..|++.|.
T Consensus 11 ~~~~~~~~~C~~C~k~f~ 28 (74)
T 2lce_A 11 MTHSDKPYKCDRCQASFR 28 (74)
T ss_dssp CCCCCCSBCCTTSSCCBS
T ss_pred ccCCCCCeECCCCCceeC
Confidence 334445568999999997
No 45
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.96 E-value=1.8 Score=32.36 Aligned_cols=34 Identities=29% Similarity=0.621 Sum_probs=24.8
Q ss_pred CcccccccccccccccccccccCccccccccCCc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
..|++|...|.-..+.-.--.||.+||..|...+
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~ 49 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKL 49 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHH
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHH
Confidence 4799999988754332333469999999997643
No 46
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=68.39 E-value=1.9 Score=30.70 Aligned_cols=26 Identities=27% Similarity=0.615 Sum_probs=18.4
Q ss_pred cccccccccccc------------cccccccccCcccc
Q psy4518 63 RCPNCSRSFNFA------------KRQHHCRLCGCIMC 88 (376)
Q Consensus 63 ~C~~C~~~F~~~------------~RrHHCR~CG~vvC 88 (376)
.|..|++.|+.. .+.+.|..||..|-
T Consensus 6 ~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred cCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcC
Confidence 699999999731 34567777777763
No 47
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=67.59 E-value=1.3 Score=34.63 Aligned_cols=29 Identities=24% Similarity=0.639 Sum_probs=23.3
Q ss_pred cccccccccccccccccccccCccccccccCC
Q psy4518 63 RCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 63 ~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
.|++|...|. .-..|-.||.+||..|...
T Consensus 24 ~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~ 52 (100)
T 3lrq_A 24 RCFICMEKLR---DARLCPHCSKLCCFSCIRR 52 (100)
T ss_dssp BCTTTCSBCS---SEEECTTTCCEEEHHHHHH
T ss_pred CCccCCcccc---CccccCCCCChhhHHHHHH
Confidence 7999998774 3455678999999999764
No 48
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=65.90 E-value=3.2 Score=30.34 Aligned_cols=30 Identities=23% Similarity=0.528 Sum_probs=22.3
Q ss_pred CcccccccccccccccccccccCccccccccCCc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
..|++|...|.--.. -.||.+||..|...+
T Consensus 13 ~~C~IC~~~~~~p~~----l~CgH~fC~~Ci~~~ 42 (79)
T 2egp_A 13 VTCPICLELLTEPLS----LDCGHSLCRACITVS 42 (79)
T ss_dssp CEETTTTEECSSCCC----CSSSCCCCHHHHSCC
T ss_pred CCCcCCCcccCCeeE----CCCCCHHHHHHHHHH
Confidence 479999998863111 269999999997753
No 49
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.88 E-value=2 Score=29.89 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=17.5
Q ss_pred Ccccccccc-cc-cccccccccccCccc
Q psy4518 62 PRCPNCSRS-FN-FAKRQHHCRLCGCIM 87 (376)
Q Consensus 62 ~~C~~C~~~-F~-~~~RrHHCR~CG~vv 87 (376)
..||.|+.. |- --..|++|..||.+.
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred ccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 579999873 32 224578888888654
No 50
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=65.85 E-value=3 Score=40.19 Aligned_cols=42 Identities=21% Similarity=0.468 Sum_probs=20.5
Q ss_pred hccccCCCcccCCC-CCcccccccc-----cccccccccccccCcccc
Q psy4518 47 NHEQAIVPWLDGKD-VPRCPNCSRS-----FNFAKRQHHCRLCGCIMC 88 (376)
Q Consensus 47 ~~Eq~~~~W~~d~~-v~~C~~C~~~-----F~~~~RrHHCR~CG~vvC 88 (376)
.+|.....|.+|-. ...||.|+.. |..-..-.-|..||.|+=
T Consensus 6 ~~~~~~~~~~~~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 6 SIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp -----------CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred HHHhcccccCccccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 34444445888766 5689999884 223345566777777763
No 51
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=64.69 E-value=3.1 Score=31.25 Aligned_cols=26 Identities=23% Similarity=0.553 Sum_probs=18.0
Q ss_pred Ccccccccccccccc----cccccccCccccc
Q psy4518 62 PRCPNCSRSFNFAKR----QHHCRLCGCIMCH 89 (376)
Q Consensus 62 ~~C~~C~~~F~~~~R----rHHCR~CG~vvC~ 89 (376)
..||.|++. . +.| --||+.||..|-.
T Consensus 27 y~C~fCgk~-~-vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 27 YDCSFCGKK-T-VKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp BCCSSCCSS-C-BSBCSSSCBCCSSSCCCCCC
T ss_pred ccCCCCCCc-e-eEecCCCeEECCCCCCEEeC
Confidence 479999975 2 333 3588888887743
No 52
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.09 E-value=3.9 Score=29.83 Aligned_cols=26 Identities=19% Similarity=0.696 Sum_probs=20.3
Q ss_pred CCcccc--cccccccccccccccccCccccc
Q psy4518 61 VPRCPN--CSRSFNFAKRQHHCRLCGCIMCH 89 (376)
Q Consensus 61 v~~C~~--C~~~F~~~~RrHHCR~CG~vvC~ 89 (376)
...|.. |.+. .++ ..+|+.||..||.
T Consensus 12 ~~~Cs~~~Ck~~-~ll--~f~C~~C~~~FC~ 39 (63)
T 1x4v_A 12 TNKCERAGCRQR-EMM--KLTCERCSRNFCI 39 (63)
T ss_dssp CCCCCSTTCCCC-CSS--CCBCSSSCCBCCH
T ss_pred CCCCCccCCCCC-Ccc--ceECCCCCcccCc
Confidence 457887 9986 433 5699999999994
No 53
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=62.55 E-value=3.4 Score=27.53 Aligned_cols=11 Identities=27% Similarity=0.881 Sum_probs=9.2
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|+.|++.|.
T Consensus 5 ~~C~~C~~~f~ 15 (57)
T 3uk3_C 5 RECSYCGKFFR 15 (57)
T ss_dssp CBCTTTCCBCS
T ss_pred ccCCCCcchhC
Confidence 36999999996
No 54
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.44 E-value=4.6 Score=29.65 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=22.0
Q ss_pred CCcccccccccccccccccccccCccccccccCC
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
...|++|...|.--. --.||.+||..|...
T Consensus 19 ~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~ 48 (85)
T 2ecv_A 19 EVTCPICLELLTQPL----SLDCGHSFCQACLTA 48 (85)
T ss_dssp CCCCTTTCSCCSSCB----CCSSSCCBCTTHHHH
T ss_pred CCCCCCCCcccCCce----eCCCCCHHHHHHHHH
Confidence 348999999886221 126999999999764
No 55
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.39 E-value=1.8 Score=33.15 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=18.8
Q ss_pred CCcccccccccc-cc-------------cccccccccCcccc
Q psy4518 61 VPRCPNCSRSFN-FA-------------KRQHHCRLCGCIMC 88 (376)
Q Consensus 61 v~~C~~C~~~F~-~~-------------~RrHHCR~CG~vvC 88 (376)
.-.|..|++.|. .. .+.+.|..||..|-
T Consensus 24 ~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~ 65 (98)
T 2gqj_A 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFK 65 (98)
T ss_dssp CCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCS
T ss_pred CcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccC
Confidence 347999999997 21 23455777776664
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.34 E-value=6.1 Score=27.25 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=22.8
Q ss_pred CCCCcccccccccccccccccccccCccccccccCC
Q psy4518 59 KDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 59 ~~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
.+...|++|...|.-- .--.||..||..|...
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA 35 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHcc
Confidence 3445799999988632 2245999999999653
No 57
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=61.10 E-value=2.7 Score=33.02 Aligned_cols=27 Identities=26% Similarity=0.536 Sum_probs=18.8
Q ss_pred Ccccccccccccccc----cccccccCcccccc
Q psy4518 62 PRCPNCSRSFNFAKR----QHHCRLCGCIMCHD 90 (376)
Q Consensus 62 ~~C~~C~~~F~~~~R----rHHCR~CG~vvC~~ 90 (376)
..||+|++. . +.| --||+.||..|-..
T Consensus 37 y~CpfCgk~-~-vkR~a~GIW~C~~Cg~~~AGG 67 (92)
T 3iz5_m 37 YFCEFCGKF-A-VKRKAVGIWGCKDCGKVKAGG 67 (92)
T ss_dssp BCCTTTCSS-C-BEEEETTEEECSSSCCEEECC
T ss_pred ccCcccCCC-e-eEecCcceEEcCCCCCEEeCC
Confidence 379999985 3 333 45899998887443
No 58
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.96 E-value=2.4 Score=32.72 Aligned_cols=26 Identities=35% Similarity=0.873 Sum_probs=18.5
Q ss_pred Ccccccccccccccc----cccccccCccccc
Q psy4518 62 PRCPNCSRSFNFAKR----QHHCRLCGCIMCH 89 (376)
Q Consensus 62 ~~C~~C~~~F~~~~R----rHHCR~CG~vvC~ 89 (376)
..||.|++. . +.| --||+.||..|-.
T Consensus 36 y~CpfCGk~-~-vkR~a~GIW~C~kCg~~~AG 65 (83)
T 3j21_i 36 HTCPVCGRK-A-VKRISTGIWQCQKCGATFAG 65 (83)
T ss_dssp BCCSSSCSS-C-EEEEETTEEEETTTCCEEEC
T ss_pred cCCCCCCCc-e-eEecCcCeEEcCCCCCEEeC
Confidence 379999985 3 333 3589999988744
No 59
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=60.92 E-value=2.8 Score=35.92 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=18.4
Q ss_pred CcccccccccccccccccccccCcc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCI 86 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~v 86 (376)
-.|..|+..|........|..||.-
T Consensus 133 y~C~~Cg~~~~~~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 133 YVCIGCGRKFSTLPPGGVCPDCGSK 157 (165)
T ss_dssp EEESSSCCEESSCCGGGBCTTTCCB
T ss_pred EECCCCCCcccCCCCCCcCCCCCCc
Confidence 4799999999865545577777763
No 60
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.42 E-value=2.9 Score=30.15 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=22.5
Q ss_pred CCcccccccccccccccccccccCccccccccCCc
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
...|++|...|.--. --.||.+||..|...+
T Consensus 20 ~~~C~IC~~~~~~~~----~~~CgH~fC~~Ci~~~ 50 (73)
T 2ysl_A 20 EVICPICLDILQKPV----TIDCGHNFCLKCITQI 50 (73)
T ss_dssp CCBCTTTCSBCSSEE----ECTTCCEEEHHHHHHH
T ss_pred CCEeccCCcccCCeE----EcCCCChhhHHHHHHH
Confidence 348999999886211 1279999999997643
No 61
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=60.12 E-value=4.2 Score=27.73 Aligned_cols=26 Identities=23% Similarity=0.813 Sum_probs=15.6
Q ss_pred Cccccccc-cccc--ccccccccccCccc
Q psy4518 62 PRCPNCSR-SFNF--AKRQHHCRLCGCIM 87 (376)
Q Consensus 62 ~~C~~C~~-~F~~--~~RrHHCR~CG~vv 87 (376)
..||.|+. .+.+ -...-.|..||.++
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 47999987 4332 23345666666655
No 62
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.56 E-value=3.5 Score=28.87 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=22.4
Q ss_pred CCcccccccccccccccccccccCccccccccCCc
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
...|++|...|.--.. -.||.+||..|...+
T Consensus 20 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~ 50 (63)
T 2ysj_A 20 EVICPICLDILQKPVT----IDCGHNFCLKCITQI 50 (63)
T ss_dssp CCBCTTTCSBCSSCEE----CTTSSEECHHHHHHH
T ss_pred CCCCCcCCchhCCeEE----eCCCCcchHHHHHHH
Confidence 3479999988762111 279999999997643
No 63
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=59.12 E-value=4.2 Score=27.01 Aligned_cols=10 Identities=20% Similarity=0.664 Sum_probs=8.5
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|+.|++.|.
T Consensus 3 ~C~~C~~~f~ 12 (57)
T 1bbo_A 3 ICEECGIRXK 12 (57)
T ss_dssp BCTTTCCBCS
T ss_pred cCCCCcCcCC
Confidence 5899999886
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=58.71 E-value=7.2 Score=35.84 Aligned_cols=63 Identities=13% Similarity=0.256 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhccCCCC----chhhh-hccccCCCcccCCCCCcccccccccc--cc---c---ccccccccCcccc
Q psy4518 23 EINKLIIRLDKLLTNMPID----PIKKK-NHEQAIVPWLDGKDVPRCPNCSRSFN--FA---K---RQHHCRLCGCIMC 88 (376)
Q Consensus 23 e~~~l~~RL~kLl~~~~~~----~~~~~-~~Eq~~~~W~~d~~v~~C~~C~~~F~--~~---~---RrHHCR~CG~vvC 88 (376)
+...+..+-..|...+|.+ +...+ ..-...|..+.+. .|.+|+...+ .+ . .-..|.+||+|+-
T Consensus 158 e~~~l~~~r~~l~~~i~~~lL~~Yerir~~~~g~avv~v~~~---~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 158 TQQIIFKKKEDLVEKTEPKIYSFYERIRRWAKNTSIVTIKKQ---ACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILY 233 (256)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHGGGSEEECBTT---BCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEE
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCceEEEeeCC---ccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEE
Confidence 4444444555566666633 22222 1222233344444 7999998654 21 1 2357777777764
No 65
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=58.14 E-value=4.4 Score=27.33 Aligned_cols=10 Identities=40% Similarity=1.075 Sum_probs=8.6
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|+.|++.|.
T Consensus 4 ~C~~C~~~f~ 13 (60)
T 2adr_A 4 VCEVCTRAFA 13 (60)
T ss_dssp CCTTTCCCBS
T ss_pred cCCCCccccC
Confidence 6899999986
No 66
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.99 E-value=3.6 Score=29.82 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=22.5
Q ss_pred CCcccccccccccccccccccccCccccccccCC
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
...|++|...|.--..-.. -.||.+||..|...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~ 47 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGI-CPCKHAFHRKCLIK 47 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEE-ETTTEEEEHHHHHH
T ss_pred CCCCcCCCcccCCCCcEEE-cCCCCEecHHHHHH
Confidence 3479999998863222111 15999999999664
No 67
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=57.90 E-value=3.3 Score=32.51 Aligned_cols=26 Identities=23% Similarity=0.553 Sum_probs=18.2
Q ss_pred Ccccccccccccccc----cccccccCccccc
Q psy4518 62 PRCPNCSRSFNFAKR----QHHCRLCGCIMCH 89 (376)
Q Consensus 62 ~~C~~C~~~F~~~~R----rHHCR~CG~vvC~ 89 (376)
..||+|++. . +.| --||+.||..|-.
T Consensus 37 y~CpfCgk~-~-vkR~a~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 37 YDCSFCGKK-T-VKRGAAGIWTCSCCKKTVAG 66 (92)
T ss_dssp CCCSSSCSS-C-CEEEETTEEECTTTCCEEEC
T ss_pred CcCCCCCCc-e-eeecccceEEcCCCCCEEeC
Confidence 379999974 2 333 3589999888744
No 68
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=57.64 E-value=8.1 Score=29.12 Aligned_cols=37 Identities=24% Similarity=0.609 Sum_probs=27.5
Q ss_pred CCCCCcccc--ccccccc--cccccccc-----ccCccccccccCC
Q psy4518 58 GKDVPRCPN--CSRSFNF--AKRQHHCR-----LCGCIMCHDCSFF 94 (376)
Q Consensus 58 d~~v~~C~~--C~~~F~~--~~RrHHCR-----~CG~vvC~~CS~~ 94 (376)
+..+..||. |+..... -.++-.|. .||..||..|...
T Consensus 22 ~~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~ 67 (80)
T 2jmo_A 22 QMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEA 67 (80)
T ss_dssp CCSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEE
T ss_pred hCCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcc
Confidence 334778987 8875542 34678897 8999999999764
No 69
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=57.09 E-value=2.5 Score=34.19 Aligned_cols=28 Identities=21% Similarity=0.454 Sum_probs=21.0
Q ss_pred cccccccccccccccccccccCccccccccCC
Q psy4518 63 RCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 63 ~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
.|++|...|.-- .--.||.+||..|...
T Consensus 54 ~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~ 81 (124)
T 3fl2_A 54 QCICCQELVFRP----ITTVCQHNVCKDCLDR 81 (124)
T ss_dssp BCTTTSSBCSSE----EECTTSCEEEHHHHHH
T ss_pred CCCcCChHHcCc----EEeeCCCcccHHHHHH
Confidence 799999888621 1127999999999754
No 70
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.08 E-value=3.4 Score=29.24 Aligned_cols=36 Identities=22% Similarity=0.502 Sum_probs=25.5
Q ss_pred CCCcccccccccccc---cccccccccCccccccccCCc
Q psy4518 60 DVPRCPNCSRSFNFA---KRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 60 ~v~~C~~C~~~F~~~---~RrHHCR~CG~vvC~~CS~~~ 95 (376)
....|++|...|.-. .+...-..||.+||..|...+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 52 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 52 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHH
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHH
Confidence 345899999988632 222345679999999997643
No 71
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=56.50 E-value=6.2 Score=28.81 Aligned_cols=35 Identities=14% Similarity=0.426 Sum_probs=23.2
Q ss_pred CCCcccccccccccccccccccccCccccccccCCc
Q psy4518 60 DVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 60 ~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
....|++|...|..-.. ..--.||.+||..|...+
T Consensus 14 ~~~~C~IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~ 48 (78)
T 2ect_A 14 SGLECPVCKEDYALGES-VRQLPCNHLFHDSCIVPW 48 (78)
T ss_dssp SSCCCTTTTSCCCTTSC-EEECTTSCEEETTTTHHH
T ss_pred CCCCCeeCCccccCCCC-EEEeCCCCeecHHHHHHH
Confidence 34589999998862211 111249999999997644
No 72
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=56.46 E-value=2.1 Score=35.50 Aligned_cols=28 Identities=29% Similarity=0.435 Sum_probs=20.9
Q ss_pred cccccccccccccccccccccCccccccccCC
Q psy4518 63 RCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 63 ~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
.|++|...|.-. .--.||.+||..|...
T Consensus 55 ~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~ 82 (138)
T 4ayc_A 55 QCIICSEYFIEA----VTLNCAHSFCSYCINE 82 (138)
T ss_dssp BCTTTCSBCSSE----EEETTSCEEEHHHHHH
T ss_pred CCcccCcccCCc----eECCCCCCccHHHHHH
Confidence 699999888521 1235999999999754
No 73
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=55.59 E-value=6.3 Score=27.99 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=23.4
Q ss_pred CCCcccccccccccccccccccccCccccccccCCc
Q psy4518 60 DVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 60 ~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
....|++|...|.-. .....-.||.+||..|...+
T Consensus 13 ~~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~ 47 (69)
T 2kiz_A 13 TEEKCTICLSILEEG-EDVRRLPCMHLFHQVCVDQW 47 (69)
T ss_dssp CCCSBTTTTBCCCSS-SCEEECTTSCEEEHHHHHHH
T ss_pred CCCCCeeCCccccCC-CcEEEeCCCCHHHHHHHHHH
Confidence 345799999887421 12233459999999997643
No 74
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=55.15 E-value=3.4 Score=31.12 Aligned_cols=28 Identities=21% Similarity=0.573 Sum_probs=18.2
Q ss_pred Ccccccccc-cc-cccccccccccCccccc
Q psy4518 62 PRCPNCSRS-FN-FAKRQHHCRLCGCIMCH 89 (376)
Q Consensus 62 ~~C~~C~~~-F~-~~~RrHHCR~CG~vvC~ 89 (376)
..||.|++. +. ....--+|+.||..|=.
T Consensus 28 y~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 57 (73)
T 1ffk_W 28 YKCPVCGFPKLKRASTSIWVCGHCGYKIAG 57 (73)
T ss_pred ccCCCCCCceeEEEEeEEEECCCCCcEEEC
Confidence 479999972 22 22334678888888743
No 75
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=54.86 E-value=16 Score=25.71 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=32.9
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCchhHHHHHHhHHH
Q psy4518 319 QDPLVQQITNIKQFIKEARMAHRYNEVASLENHLKE 354 (376)
Q Consensus 319 ~~~L~EQ~~~v~~~I~~A~~~rrfdEV~~L~~NL~E 354 (376)
++|-.+|+.-.+.+-+-|-.+-.||+|.+-..||+.
T Consensus 10 ~~~~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~ 45 (53)
T 2rkl_A 10 IMDRASKIEQIQKLAKYAISALNYEDLPTAKDELTK 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 557889999999999999999999999999988864
No 76
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=54.82 E-value=4 Score=31.40 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=9.4
Q ss_pred Cccccccccc-c
Q psy4518 62 PRCPNCSRSF-N 72 (376)
Q Consensus 62 ~~C~~C~~~F-~ 72 (376)
-.|+.|++.| .
T Consensus 35 ~~C~~C~k~F~~ 46 (96)
T 2ctd_A 35 VSCPTCQAVGRK 46 (96)
T ss_dssp EECTTTCSCEES
T ss_pred cCCCCCCCCccc
Confidence 4799999999 5
No 77
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=54.69 E-value=2.5 Score=31.02 Aligned_cols=29 Identities=14% Similarity=-0.022 Sum_probs=21.5
Q ss_pred CcccccccccccccccccccccCccccccccCC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
-.|++|...|.-- ..-.||.+||..|...
T Consensus 9 ~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~ 37 (78)
T 1t1h_A 9 FRCPISLELMKDP----VIVSTGQTYERSSIQK 37 (78)
T ss_dssp SSCTTTSCCCSSE----EEETTTEEEEHHHHHH
T ss_pred CCCCCccccccCC----EEcCCCCeecHHHHHH
Confidence 4799999987621 1126999999999764
No 78
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=54.13 E-value=3 Score=33.43 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=18.3
Q ss_pred Cccccccccccc---ccccccccccCcccccc
Q psy4518 62 PRCPNCSRSFNF---AKRQHHCRLCGCIMCHD 90 (376)
Q Consensus 62 ~~C~~C~~~F~~---~~RrHHCR~CG~vvC~~ 90 (376)
..||+|++. .+ -..--||+.||..|-..
T Consensus 37 y~CpfCgk~-~vKR~a~GIW~C~kCg~~~AGG 67 (103)
T 4a17_Y 37 YGCPFCGKV-AVKRAAVGIWKCKPCKKIIAGG 67 (103)
T ss_dssp EECTTTCCE-EEEEEETTEEEETTTTEEEECC
T ss_pred CCCCCCCCc-eeeecCcceEEcCCCCCEEeCC
Confidence 379999874 21 12245888888887443
No 79
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.03 E-value=13 Score=26.63 Aligned_cols=35 Identities=23% Similarity=0.538 Sum_probs=25.6
Q ss_pred CCccccccccccccc--ccccccc--cCccccccccCCc
Q psy4518 61 VPRCPNCSRSFNFAK--RQHHCRL--CGCIMCHDCSFFL 95 (376)
Q Consensus 61 v~~C~~C~~~F~~~~--RrHHCR~--CG~vvC~~CS~~~ 95 (376)
...||.|+....... -.-.|+. ||..||..|...+
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 468999998665332 2456888 9999999997654
No 80
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=53.89 E-value=4.7 Score=32.71 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=19.6
Q ss_pred CCcccccccccccccccc-cccccCcc
Q psy4518 61 VPRCPNCSRSFNFAKRQH-HCRLCGCI 86 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrH-HCR~CG~v 86 (376)
.-.|..|+..|.....-. .|..||.-
T Consensus 73 ~~~C~~CG~~~e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFKPNALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEECSCCSTTCCCSSSSSC
T ss_pred eEEcCCCCCEEeCCCCCCCcCccccCC
Confidence 347999999998866656 67777664
No 81
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.35 E-value=3.9 Score=29.77 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=24.5
Q ss_pred CCCcccccccccccccccccccccCccccccccCCc
Q psy4518 60 DVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 60 ~v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
....|++|...|.--. ....-.||.+||..|...+
T Consensus 22 ~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w 56 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKW 56 (75)
T ss_dssp SCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHH
T ss_pred CCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHH
Confidence 4458999999886322 2233459999999997643
No 82
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.61 E-value=5 Score=31.39 Aligned_cols=28 Identities=25% Similarity=0.604 Sum_probs=20.9
Q ss_pred cccccccccccccccccccccCccccccccCC
Q psy4518 63 RCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 63 ~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
.|++|...|.-- .--.||.+||..|...
T Consensus 23 ~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~ 50 (112)
T 1jm7_A 23 ECPICLELIKEP----VSTKCDHIFCKFCMLK 50 (112)
T ss_dssp SCSSSCCCCSSC----CBCTTSCCCCSHHHHH
T ss_pred CCcccChhhcCe----EECCCCCHHHHHHHHH
Confidence 699999877521 1136999999999764
No 83
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=52.48 E-value=2.8 Score=31.40 Aligned_cols=24 Identities=29% Similarity=0.785 Sum_probs=16.8
Q ss_pred Ccccccccccc--cccccccccccCccc
Q psy4518 62 PRCPNCSRSFN--FAKRQHHCRLCGCIM 87 (376)
Q Consensus 62 ~~C~~C~~~F~--~~~RrHHCR~CG~vv 87 (376)
-.|| |+.-+- -..+.|-|. ||..+
T Consensus 5 v~C~-C~~~~~~~~~~kT~~C~-CG~~~ 30 (71)
T 1gh9_A 5 FRCD-CGRALYSREGAKTRKCV-CGRTV 30 (71)
T ss_dssp EEET-TSCCEEEETTCSEEEET-TTEEE
T ss_pred EECC-CCCEEEEcCCCcEEECC-CCCee
Confidence 4688 887443 345678887 88875
No 84
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=52.48 E-value=6.3 Score=26.30 Aligned_cols=11 Identities=27% Similarity=0.896 Sum_probs=9.4
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|+.|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (54)
T 2eps_A 13 YICQSCGKGFS 23 (54)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 47999999996
No 85
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=52.24 E-value=6.4 Score=27.81 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=22.1
Q ss_pred CcccccccccccccccccccccCccccccccCC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
..|++|...|.-- ...-.||.+||..|...
T Consensus 6 ~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~ 35 (68)
T 1chc_A 6 ERCPICLEDPSNY---SMALPCLHAFCYVCITR 35 (68)
T ss_dssp CCCSSCCSCCCSC---EEETTTTEEESTTHHHH
T ss_pred CCCeeCCccccCC---cEecCCCCeeHHHHHHH
Confidence 4799999987521 23456999999999754
No 86
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.59 E-value=4.8 Score=28.84 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=9.4
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|..|++.|.
T Consensus 8 ~~C~~C~k~f~ 18 (78)
T 2d9h_A 8 LQCEICGFTCR 18 (78)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCeeC
Confidence 46999999996
No 87
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=51.38 E-value=5.7 Score=27.80 Aligned_cols=11 Identities=36% Similarity=0.884 Sum_probs=9.3
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|..|++.|.
T Consensus 10 ~~C~~C~k~f~ 20 (70)
T 1x5w_A 10 EKCSECSYSCS 20 (70)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCcccC
Confidence 47999999997
No 88
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.36 E-value=4.1 Score=29.38 Aligned_cols=30 Identities=23% Similarity=0.497 Sum_probs=21.6
Q ss_pred CCcccccccccccccccccccccCccccccccCC
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
...|++|...|.-. .--.||.+||..|...
T Consensus 15 ~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~ 44 (71)
T 2d8t_A 15 VPECAICLQTCVHP----VSLPCKHVFCYLCVKG 44 (71)
T ss_dssp CCBCSSSSSBCSSE----EEETTTEEEEHHHHHH
T ss_pred CCCCccCCcccCCC----EEccCCCHHHHHHHHH
Confidence 34799999887522 1125999999999764
No 89
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.36 E-value=7 Score=26.52 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=22.6
Q ss_pred CCcccccccccccccccccccccCccccccccCCc
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
...|++|...|.--. --.||.+||..|...+
T Consensus 15 ~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 15 EASCSVCLEYLKEPV----IIECGHNFCKACITRW 45 (58)
T ss_dssp CCBCSSSCCBCSSCC----CCSSCCCCCHHHHHHH
T ss_pred CCCCccCCcccCccE----eCCCCCccCHHHHHHH
Confidence 348999999886321 1369999999997643
No 90
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=51.29 E-value=3.6 Score=29.40 Aligned_cols=35 Identities=23% Similarity=0.515 Sum_probs=25.1
Q ss_pred CCcccccccccccc---cccccccccCccccccccCCc
Q psy4518 61 VPRCPNCSRSFNFA---KRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 61 v~~C~~C~~~F~~~---~RrHHCR~CG~vvC~~CS~~~ 95 (376)
...|++|...|.-. .+......||.+||..|...+
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 47 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 47 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHH
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHH
Confidence 34799999988632 222355689999999997643
No 91
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=51.18 E-value=5.7 Score=28.03 Aligned_cols=12 Identities=25% Similarity=0.786 Sum_probs=9.7
Q ss_pred CCcccccccccc
Q psy4518 61 VPRCPNCSRSFN 72 (376)
Q Consensus 61 v~~C~~C~~~F~ 72 (376)
.-.|+.|++.|.
T Consensus 14 ~~~C~~C~k~f~ 25 (72)
T 1x6e_A 14 PYGCVECGKAFS 25 (72)
T ss_dssp CEECSSSCCEES
T ss_pred CccCCCCCCccC
Confidence 347999999996
No 92
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.76 E-value=6.1 Score=28.50 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=22.2
Q ss_pred CCcccccccccccccccccccccCccccccccCC
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
...|++|...|.- ...-..||.+||..|...
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~ 45 (72)
T 2djb_A 15 YILCSICKGYLID---ATTITECLHTFCKSCIVR 45 (72)
T ss_dssp GGSCTTTSSCCSS---CEECSSSCCEECHHHHHH
T ss_pred CCCCCCCChHHHC---cCEECCCCCHHHHHHHHH
Confidence 3479999887752 222347999999999654
No 93
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.56 E-value=5.4 Score=29.48 Aligned_cols=31 Identities=23% Similarity=0.536 Sum_probs=22.6
Q ss_pred CCcccccccccccccccccccccCccccccccCCc
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
...|++|...|.-- .--.||.+||..|...+
T Consensus 15 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~ 45 (81)
T 2csy_A 15 PFRCFICRQAFQNP----VVTKCRHYFCESCALEH 45 (81)
T ss_dssp CSBCSSSCSBCCSE----EECTTSCEEEHHHHHHH
T ss_pred CCCCcCCCchhcCe----eEccCCCHhHHHHHHHH
Confidence 34799999888521 12479999999997643
No 94
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=50.55 E-value=4.8 Score=28.72 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=9.4
Q ss_pred cccccccccc--ccccCcc
Q psy4518 70 SFNFAKRQHH--CRLCGCI 86 (376)
Q Consensus 70 ~F~~~~RrHH--CR~CG~v 86 (376)
+|+-...+-| ||.||+.
T Consensus 8 SfGKr~~ktH~~CrRCG~~ 26 (57)
T 1vq8_1 8 SQGKKNTTTHTKCRRCGEK 26 (57)
T ss_dssp HHTTCCCCCEEECTTTCSE
T ss_pred cccccCCCccccccccCCh
Confidence 4554444444 7777765
No 95
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.45 E-value=4.4 Score=28.68 Aligned_cols=30 Identities=27% Similarity=0.631 Sum_probs=22.1
Q ss_pred CcccccccccccccccccccccCccccccccCCc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
..|++|...|.--.. -.||.+||..|...+
T Consensus 16 ~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~ 45 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQ----TECGHRFCESCMAAL 45 (66)
T ss_dssp EECTTTCCEESSCCC----CSSSCCCCHHHHHHH
T ss_pred CCCCCCChHhcCeeE----CCCCCHHHHHHHHHH
Confidence 479999988762211 379999999997643
No 96
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.26 E-value=3.3 Score=28.91 Aligned_cols=29 Identities=21% Similarity=0.579 Sum_probs=21.3
Q ss_pred CCcccccccccccc-----cccccccccCccccc
Q psy4518 61 VPRCPNCSRSFNFA-----KRQHHCRLCGCIMCH 89 (376)
Q Consensus 61 v~~C~~C~~~F~~~-----~RrHHCR~CG~vvC~ 89 (376)
.-.|+.|++.|... .+.+.|..||..|-.
T Consensus 18 ~~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f~~ 51 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQ 51 (73)
T ss_dssp EEECSSSCCEEECCCCCCCSSSCCCHHHHHTCSC
T ss_pred CeeCCcccchhCCHHHhCcCCCCCCCCCChhhcC
Confidence 35799999999621 567788888877643
No 97
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=49.65 E-value=5.9 Score=28.00 Aligned_cols=26 Identities=27% Similarity=0.629 Sum_probs=16.0
Q ss_pred CCccccccc-cc-ccccccccccccCcc
Q psy4518 61 VPRCPNCSR-SF-NFAKRQHHCRLCGCI 86 (376)
Q Consensus 61 v~~C~~C~~-~F-~~~~RrHHCR~CG~v 86 (376)
...||.|+. -| .-..-+++|..||..
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCE
Confidence 357999997 22 122346677777664
No 98
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.60 E-value=7.8 Score=30.87 Aligned_cols=30 Identities=23% Similarity=0.510 Sum_probs=21.1
Q ss_pred CcccccccccccccccccccccCccccccccCC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
-.|++|...|.- -..-..||.+||..|...
T Consensus 23 ~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~ 52 (117)
T 1jm7_B 23 LRCSRCTNILRE---PVCLGGCEHIFCSNCVSD 52 (117)
T ss_dssp TSCSSSCSCCSS---CBCCCSSSCCBCTTTGGG
T ss_pred CCCCCCChHhhC---ccEeCCCCCHHHHHHHHH
Confidence 379999887741 111126999999999764
No 99
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=49.41 E-value=4.2 Score=31.34 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=21.9
Q ss_pred CcccccccccccccccccccccCccccccccCC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
..|++|...|.- -.....||.+||..|...
T Consensus 23 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~ 52 (99)
T 2y43_A 23 LRCGICFEYFNI---AMIIPQCSHNYCSLCIRK 52 (99)
T ss_dssp TBCTTTCSBCSS---EEECTTTCCEEEHHHHHH
T ss_pred CCcccCChhhCC---cCEECCCCCHhhHHHHHH
Confidence 479999988752 122236999999999764
No 100
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=49.27 E-value=6.1 Score=28.76 Aligned_cols=30 Identities=20% Similarity=0.384 Sum_probs=21.5
Q ss_pred CcccccccccccccccccccccCccccccccCC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
..|++|...|.- -..-..||.+||..|...
T Consensus 16 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~ 45 (74)
T 2yur_A 16 LLCLICKDIMTD---AVVIPCCGNSYCDECIRT 45 (74)
T ss_dssp GSCSSSCCCCTT---CEECSSSCCEECTTHHHH
T ss_pred CCCcCCChHHhC---CeEcCCCCCHHHHHHHHH
Confidence 479999887752 222334999999999764
No 101
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.35 E-value=7.2 Score=27.22 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=16.0
Q ss_pred CcccccccccccccccccccccCcc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCI 86 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~v 86 (376)
..|+.|+.. .-.+-.+||.||..
T Consensus 15 ~iCpkC~a~--~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGAT--NPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCE--ECTTCSSCSSSSSC
T ss_pred ccCCCCCCc--CCCCceecCCCCCc
Confidence 468888876 45666777777764
No 102
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=48.32 E-value=9.1 Score=28.64 Aligned_cols=34 Identities=26% Similarity=0.692 Sum_probs=23.7
Q ss_pred CCCccccccccccccccc-ccccccCccccccccCC
Q psy4518 60 DVPRCPNCSRSFNFAKRQ-HHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 60 ~v~~C~~C~~~F~~~~Rr-HHCR~CG~vvC~~CS~~ 94 (376)
+...||+|-..|+..... ..| .||..||..|-..
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~ 44 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHR 44 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHH
T ss_pred cCCcCCccCccCcccccccccc-CCCCCcCHHHHHH
Confidence 345799999988653222 223 5999999999653
No 103
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.15 E-value=5.9 Score=28.25 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=22.9
Q ss_pred CCcccccccccccccccccccccCccccccccCCc
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
...|++|...|.- .--.||.+||..|...+
T Consensus 15 ~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~ 44 (70)
T 2ecn_A 15 EEECCICMDGRAD-----LILPCAHSFCQKCIDKW 44 (70)
T ss_dssp CCCCSSSCCSCCS-----EEETTTEEECHHHHHHS
T ss_pred CCCCeeCCcCccC-----cccCCCCcccHHHHHHH
Confidence 3489999988764 33569999999997643
No 104
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=47.72 E-value=7.1 Score=29.93 Aligned_cols=29 Identities=17% Similarity=0.513 Sum_probs=16.2
Q ss_pred CCcccCCCCCcccccccccccccccccccccCcc
Q psy4518 53 VPWLDGKDVPRCPNCSRSFNFAKRQHHCRLCGCI 86 (376)
Q Consensus 53 ~~W~~d~~v~~C~~C~~~F~~~~RrHHCR~CG~v 86 (376)
..|... ...|..|++.|...- .|.-||.-
T Consensus 12 l~~~~~--~~~C~~C~~~~~~~a---fCPeCgq~ 40 (81)
T 2jrp_A 12 LERNGD--TAHCETCAKDFSLQA---LCPDCRQP 40 (81)
T ss_dssp CEECSS--EEECTTTCCEEEEEE---ECSSSCSC
T ss_pred cccCCC--ceECccccccCCCcc---cCcchhhH
Confidence 356433 445888887664322 56555554
No 105
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=47.71 E-value=4.3 Score=33.17 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=8.6
Q ss_pred cCCCcccCCCCCccccccccccccc----------ccccc----cccCccccccccCCc
Q psy4518 51 AIVPWLDGKDVPRCPNCSRSFNFAK----------RQHHC----RLCGCIMCHDCSFFL 95 (376)
Q Consensus 51 ~~~~W~~d~~v~~C~~C~~~F~~~~----------RrHHC----R~CG~vvC~~CS~~~ 95 (376)
.+..|..|..+..|.+|...|.-.- -...| -.||.+||..|...+
T Consensus 38 ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~W 96 (117)
T 4a0k_B 38 AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW 96 (117)
T ss_dssp EEEEEEECCCC------------------------------------------------
T ss_pred EEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHH
Confidence 4667888888899999999986310 01122 259999999997654
No 106
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=47.63 E-value=12 Score=26.57 Aligned_cols=14 Identities=29% Similarity=0.866 Sum_probs=11.1
Q ss_pred CCCCcccccccccc
Q psy4518 59 KDVPRCPNCSRSFN 72 (376)
Q Consensus 59 ~~v~~C~~C~~~F~ 72 (376)
...-.|+.|++.|.
T Consensus 16 ~~~~~C~~C~~~f~ 29 (77)
T 2cot_A 16 RRRYKCDECGKSFS 29 (77)
T ss_dssp SCSSBCSSSCCBCS
T ss_pred CCCEECCCCCcccC
Confidence 34568999999997
No 107
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=47.46 E-value=3.7 Score=28.36 Aligned_cols=11 Identities=45% Similarity=1.008 Sum_probs=9.1
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|+.|++.|.
T Consensus 11 ~~C~~C~k~f~ 21 (66)
T 2drp_A 11 YRCKVCSRVYT 21 (66)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCcchhC
Confidence 36999999987
No 108
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=46.83 E-value=4.5 Score=28.07 Aligned_cols=34 Identities=24% Similarity=0.530 Sum_probs=24.4
Q ss_pred Ccccccccccccc---cccccccccCccccccccCCc
Q psy4518 62 PRCPNCSRSFNFA---KRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 62 ~~C~~C~~~F~~~---~RrHHCR~CG~vvC~~CS~~~ 95 (376)
..|++|...|.-. .+......||.+||..|...+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 40 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 40 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHH
Confidence 4799999988632 223345679999999997643
No 109
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=46.61 E-value=4.4 Score=30.96 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=23.2
Q ss_pred CCcccccccccccccccccccccCccccccccCCc
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
...|++|...|.--.. ...-.||.+||..|...+
T Consensus 40 ~~~C~IC~~~~~~~~~-~~~l~C~H~Fh~~Ci~~w 73 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDV-ATELPCHHYFHKPCVSIW 73 (91)
T ss_dssp CSEETTTTEECCTTCE-EEEETTTEEEEHHHHHHH
T ss_pred CCCCcccChhhcCCCc-EEecCCCChHHHHHHHHH
Confidence 3479999988864221 222349999999997644
No 110
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=46.43 E-value=7.2 Score=25.12 Aligned_cols=11 Identities=27% Similarity=0.785 Sum_probs=9.1
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (48)
T 2epr_A 13 VACEICGKIFR 23 (48)
T ss_dssp EEETTTTEEES
T ss_pred eeCCCCCcccC
Confidence 46999999886
No 111
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=45.98 E-value=9.4 Score=27.12 Aligned_cols=9 Identities=33% Similarity=0.656 Sum_probs=6.8
Q ss_pred CCccccccc
Q psy4518 61 VPRCPNCSR 69 (376)
Q Consensus 61 v~~C~~C~~ 69 (376)
+..||.|+.
T Consensus 11 ~~~Cp~C~~ 19 (58)
T 1dl6_A 11 RVTCPNHPD 19 (58)
T ss_dssp CCSBTTBSS
T ss_pred cccCcCCCC
Confidence 347999976
No 112
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=45.87 E-value=4.8 Score=31.59 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=21.8
Q ss_pred CcccccccccccccccccccccCccccccccCC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
..|++|...|.- -...-.||.+||..|...
T Consensus 16 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~ 45 (108)
T 2ckl_A 16 LMCVLCGGYFID---ATTIIECLHSFCKTCIVR 45 (108)
T ss_dssp TBCTTTSSBCSS---EEEETTTCCEEEHHHHHH
T ss_pred CCCccCChHHhC---cCEeCCCCChhhHHHHHH
Confidence 379999887752 222347999999999654
No 113
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=45.79 E-value=15 Score=24.05 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHhHHHH
Q psy4518 325 QITNIKQFIKEARMAHRYNEVASLENHLKEL 355 (376)
Q Consensus 325 Q~~~v~~~I~~A~~~rrfdEV~~L~~NL~EL 355 (376)
-+.-|+.-|--|-..|.||.|.+|+..|+-|
T Consensus 9 ~I~aiEQqiyvA~seGd~etv~~Le~QL~~l 39 (40)
T 1gp8_A 9 NKDAIRKQMDAAASKGDVETYRKLKAKLKGI 39 (40)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 3455666677799999999999999988643
No 114
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=45.06 E-value=8.1 Score=27.54 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=9.9
Q ss_pred CCcccccccccc
Q psy4518 61 VPRCPNCSRSFN 72 (376)
Q Consensus 61 v~~C~~C~~~F~ 72 (376)
.-.|+.|++.|.
T Consensus 15 ~~~C~~C~k~f~ 26 (77)
T 2ct1_A 15 PYECYICHARFT 26 (77)
T ss_dssp SEECTTTCCEES
T ss_pred CeECCCcCchhC
Confidence 347999999997
No 115
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=43.94 E-value=7.1 Score=32.75 Aligned_cols=15 Identities=27% Similarity=0.771 Sum_probs=11.8
Q ss_pred CCccccccccccccc
Q psy4518 61 VPRCPNCSRSFNFAK 75 (376)
Q Consensus 61 v~~C~~C~~~F~~~~ 75 (376)
+-.|..|+..|.+..
T Consensus 70 ~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 70 VFKCRNCNYEWKLKE 84 (139)
T ss_dssp EEEETTTCCEEEGGG
T ss_pred cEECCCCCCEEeccc
Confidence 447999999988755
No 116
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=43.67 E-value=67 Score=24.78 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=42.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCccccHHHHHHHHHHHHHHHHHHHHHHH
Q psy4518 138 NSRPLICDLYDALMGKKQEASKLRAMYLEMIDSLLAGETMYYASDAQALRVKLVRLAENIDTISN 202 (376)
Q Consensus 138 ~~~p~i~~~Ye~L~~~~~~I~~~lP~f~~~l~sL~~g~s~~~l~~a~~lR~kL~~~f~~~d~~sk 202 (376)
...|.|..+|....-++-.+..++-+|-. .-.+...|+.+|.++-..||.+--
T Consensus 32 ~~d~eiq~LY~~v~~lRPkL~~li~kysq------------Kk~eL~~Ln~kl~~a~~~Yd~lle 84 (88)
T 2pjw_H 32 LQDPHIGDMYGSVTPLRPQVTRMLGKYAK------------EKEDMLSLRQVLANAERSYNQLMD 84 (88)
T ss_dssp HSCHHHHHHHHHHTTHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999988888888877654 245788899999999999998753
No 117
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=43.10 E-value=12 Score=33.03 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=12.7
Q ss_pred CCcccCCCCC-ccccccc
Q psy4518 53 VPWLDGKDVP-RCPNCSR 69 (376)
Q Consensus 53 ~~W~~d~~v~-~C~~C~~ 69 (376)
..|.++-.+. .||.|+.
T Consensus 12 ~~~~~~ln~~~~CPECGs 29 (197)
T 3k1f_M 12 GRRGPNLNIVLTCPECKV 29 (197)
T ss_dssp -CCSSCCCCCCCCTTTCC
T ss_pred cccccccccCeECcCCCC
Confidence 3688776664 7999997
No 118
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=42.33 E-value=5.6 Score=30.06 Aligned_cols=30 Identities=20% Similarity=0.384 Sum_probs=21.4
Q ss_pred CcccccccccccccccccccccCccccccccCC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
-.|++|...|.- -..-..||..||..|...
T Consensus 14 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~ 43 (92)
T 3ztg_A 14 LLCLICKDIMTD---AVVIPCCGNSYCDECIRT 43 (92)
T ss_dssp TEETTTTEECSS---CEECTTTCCEECHHHHHH
T ss_pred CCCCCCChhhcC---ceECCCCCCHHHHHHHHH
Confidence 479999987751 112233999999999764
No 119
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=42.30 E-value=8.9 Score=28.18 Aligned_cols=27 Identities=26% Similarity=0.866 Sum_probs=18.3
Q ss_pred ccccccc---ccccccccccccccCccccc
Q psy4518 63 RCPNCSR---SFNFAKRQHHCRLCGCIMCH 89 (376)
Q Consensus 63 ~C~~C~~---~F~~~~RrHHCR~CG~vvC~ 89 (376)
.||.|.+ -|+-...---|..||.+.|.
T Consensus 9 KCp~C~niq~VFShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 9 KCPDCEHEQVIFDHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp ECTTTCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred ECCCCCCceEEEecCceEEEcccCCCEEee
Confidence 6888887 45555556667777777664
No 120
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=42.17 E-value=13 Score=27.12 Aligned_cols=30 Identities=20% Similarity=0.499 Sum_probs=22.0
Q ss_pred CCcccccccccccccccccccccCccccccccCC
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
...|++|...|.--. --.||.+||..|...
T Consensus 19 ~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~ 48 (85)
T 2ecw_A 19 EVTCPICLELLKEPV----SADCNHSFCRACITL 48 (85)
T ss_dssp TTSCTTTCSCCSSCE----ECTTSCCBCHHHHHH
T ss_pred CCCCcCCChhhCcce----eCCCCCHHHHHHHHH
Confidence 348999998876321 135999999999764
No 121
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=42.06 E-value=6.1 Score=27.81 Aligned_cols=33 Identities=24% Similarity=0.749 Sum_probs=22.0
Q ss_pred ccccccc-ccccccccccccccCccccccccCCc
Q psy4518 63 RCPNCSR-SFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 63 ~C~~C~~-~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
.|++|.. .|.--..+..=-.||.+||..|...+
T Consensus 5 ~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~ 38 (65)
T 1g25_A 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLL 38 (65)
T ss_dssp CCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHH
T ss_pred cCCcCCCCccCCCccCeecCCCCCHhHHHHHHHH
Confidence 6999988 56432221122479999999997643
No 122
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=41.08 E-value=13 Score=25.45 Aligned_cols=24 Identities=29% Similarity=0.717 Sum_probs=16.5
Q ss_pred ccccccccccc----ccccccccccCcc
Q psy4518 63 RCPNCSRSFNF----AKRQHHCRLCGCI 86 (376)
Q Consensus 63 ~C~~C~~~F~~----~~RrHHCR~CG~v 86 (376)
.|.-|++.|+. ..=--+|..||.-
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCS
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcE
Confidence 68999999983 2234577777753
No 123
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.76 E-value=1.5e+02 Score=24.14 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=51.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCccccH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy4518 138 NSRPLICDLYDALMGKKQEASKLRAMYLEMIDSLLAGETMYYA-SDAQALRVKLVRLAENIDTISNKVTTLS 208 (376)
Q Consensus 138 ~~~p~i~~~Ye~L~~~~~~I~~~lP~f~~~l~sL~~g~s~~~l-~~a~~lR~kL~~~f~~~d~~skri~~l~ 208 (376)
...|.+..+++.+...--.|...+..|++++..|..+.....| .-...++.+.-.+++......|++..++
T Consensus 7 ~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~ 78 (130)
T 2dnx_A 7 GQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLP 78 (130)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3568899999999999999999999999999999765433333 2334455566666666666666776664
No 124
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.06 E-value=10 Score=27.61 Aligned_cols=27 Identities=22% Similarity=0.813 Sum_probs=17.9
Q ss_pred ccccccc---ccccccccccccccCccccc
Q psy4518 63 RCPNCSR---SFNFAKRQHHCRLCGCIMCH 89 (376)
Q Consensus 63 ~C~~C~~---~F~~~~RrHHCR~CG~vvC~ 89 (376)
.|+.|.+ -|+-..--.-|-.||.+.|.
T Consensus 17 kCp~C~~~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 17 KCIDCGNEQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp ECSSSCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred ECCCCCCeeEEEecCCeEEEccCcCCEEec
Confidence 6999987 45555555566666666653
No 125
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=39.82 E-value=13 Score=27.95 Aligned_cols=26 Identities=27% Similarity=0.723 Sum_probs=20.4
Q ss_pred CCcccc--cccccccccccccccccCccccc
Q psy4518 61 VPRCPN--CSRSFNFAKRQHHCRLCGCIMCH 89 (376)
Q Consensus 61 v~~C~~--C~~~F~~~~RrHHCR~CG~vvC~ 89 (376)
...|.. |.+. .++ -..|+.||.+||.
T Consensus 14 g~~Cs~~~C~~~-dfl--pf~C~~C~~~FC~ 41 (75)
T 1wys_A 14 GQHCQVQHCRQR-DFL--PFVCDGCSGIFCL 41 (75)
T ss_dssp CCCCSCTTTCCC-SCC--CEECTTTCCEECS
T ss_pred CCCcCcccCCCc-cce--eeECcccCcCcCc
Confidence 357877 9986 333 7799999999995
No 126
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=39.78 E-value=9.3 Score=30.12 Aligned_cols=11 Identities=36% Similarity=0.797 Sum_probs=9.1
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|..|++.|.
T Consensus 75 ~~C~~C~k~f~ 85 (129)
T 2wbt_A 75 FVCPLCLMPFS 85 (129)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCcccC
Confidence 36999999986
No 127
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=39.42 E-value=8.6 Score=30.23 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=22.8
Q ss_pred ccccccccccccc--------------ccccccccCccccccccCCc
Q psy4518 63 RCPNCSRSFNFAK--------------RQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 63 ~C~~C~~~F~~~~--------------RrHHCR~CG~vvC~~CS~~~ 95 (376)
.|++|...|..-. ..-..-.||.+||..|...+
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w 73 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAM 73 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHH
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHH
Confidence 7999999885321 11113469999999997654
No 128
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=38.89 E-value=13 Score=27.37 Aligned_cols=11 Identities=27% Similarity=0.999 Sum_probs=9.3
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|+.|++.|.
T Consensus 9 ~~C~~C~~~f~ 19 (96)
T 2dmd_A 9 HKCEVCGKCFS 19 (96)
T ss_dssp CCBTTTTBCCC
T ss_pred eECCCCCCccC
Confidence 47999999996
No 129
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=38.31 E-value=15 Score=26.73 Aligned_cols=26 Identities=23% Similarity=0.580 Sum_probs=17.6
Q ss_pred CCCccccccccccccc-ccccccccCc
Q psy4518 60 DVPRCPNCSRSFNFAK-RQHHCRLCGC 85 (376)
Q Consensus 60 ~v~~C~~C~~~F~~~~-RrHHCR~CG~ 85 (376)
..-.|..|+..|.+-. -.-.|+.||.
T Consensus 20 v~Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp CCCBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred eEEECCCCCCeeecCCCCceECCCCCc
Confidence 3458999999998553 3455666654
No 130
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=38.26 E-value=14 Score=28.58 Aligned_cols=27 Identities=22% Similarity=0.764 Sum_probs=19.4
Q ss_pred ccccccc---ccccccccccccccCccccc
Q psy4518 63 RCPNCSR---SFNFAKRQHHCRLCGCIMCH 89 (376)
Q Consensus 63 ~C~~C~~---~F~~~~RrHHCR~CG~vvC~ 89 (376)
.|+.|.. -|+-..--.-|..||.+.|.
T Consensus 38 kCp~C~~~~~VFShA~t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 38 KCQGCFNITTVFSHSQTVVVCPGCQTVLCQ 67 (86)
T ss_dssp ECTTTCCEEEEETTCSSCCCCSSSCCCCSC
T ss_pred ECCCCCCeeEEEecCCcEEEccCCCCEeec
Confidence 6999987 56655556677777777764
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=38.03 E-value=43 Score=30.04 Aligned_cols=30 Identities=3% Similarity=-0.306 Sum_probs=21.6
Q ss_pred CCcccccccccccccccccccccCccccccccCC
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
.-.||+|...|. --..-.||.+||..|...
T Consensus 208 ~~~c~i~~~~~~----dPv~~~~gh~f~~~~i~~ 237 (281)
T 2c2l_A 208 YLCGKISFELMR----EPCITPSGITYDRKDIEE 237 (281)
T ss_dssp TTBCTTTCSBCS----SEEECSSCCEEETTHHHH
T ss_pred ccCCcCcCCHhc----CCeECCCCCEECHHHHHH
Confidence 347999998775 222235999999999653
No 132
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=37.96 E-value=12 Score=27.41 Aligned_cols=10 Identities=40% Similarity=1.095 Sum_probs=8.7
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|+.|++.|.
T Consensus 5 ~C~~C~k~f~ 14 (88)
T 1llm_C 5 QCRICMRNFS 14 (88)
T ss_dssp ECTTTCCEES
T ss_pred cCCCCCCccC
Confidence 6999999986
No 133
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=37.81 E-value=7.4 Score=32.82 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=21.4
Q ss_pred CcccccccccccccccccccccCccccccccCC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
..|++|...|.--. --.||.+||..|...
T Consensus 79 ~~C~IC~~~~~~pv----~~~CgH~fC~~Ci~~ 107 (150)
T 1z6u_A 79 FMCVCCQELVYQPV----TTECFHNVCKDCLQR 107 (150)
T ss_dssp TBCTTTSSBCSSEE----ECTTSCEEEHHHHHH
T ss_pred CEeecCChhhcCCE----EcCCCCchhHHHHHH
Confidence 37999998876211 147999999999764
No 134
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.48 E-value=15 Score=28.08 Aligned_cols=9 Identities=44% Similarity=1.372 Sum_probs=4.4
Q ss_pred ccccccccc
Q psy4518 63 RCPNCSRSF 71 (376)
Q Consensus 63 ~C~~C~~~F 71 (376)
.|..|++.|
T Consensus 21 ~C~~C~k~f 29 (115)
T 2dmi_A 21 RCKDCSAAY 29 (115)
T ss_dssp EBSSSSCEE
T ss_pred ECCccCchh
Confidence 455555444
No 135
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=36.98 E-value=17 Score=22.68 Aligned_cols=11 Identities=36% Similarity=0.935 Sum_probs=8.7
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|..|++.|.
T Consensus 11 ~~C~~C~k~f~ 21 (45)
T 2epq_A 11 YSCPVCGLRFK 21 (45)
T ss_dssp SEETTTTEECS
T ss_pred CcCCCCCcccC
Confidence 46888888886
No 136
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=36.95 E-value=12 Score=28.84 Aligned_cols=31 Identities=23% Similarity=0.615 Sum_probs=23.4
Q ss_pred cccccccccccccccccccccCccccccccCCc
Q psy4518 63 RCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 63 ~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
.|.+|.. |+ ..-..-||.||+||=..|....
T Consensus 17 ~C~VC~~-~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 17 MCDVCEV-WT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCTTTCC-CC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred ccCcccc-cc-ccceeccccccccccHhhcccc
Confidence 7999985 32 3446789999999988887643
No 137
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=36.58 E-value=22 Score=27.23 Aligned_cols=11 Identities=36% Similarity=1.099 Sum_probs=8.3
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|+.|++.|.
T Consensus 8 ~~C~~C~~~f~ 18 (124)
T 2dlq_A 8 VECPTCHKKFL 18 (124)
T ss_dssp CCCTTTCCCCS
T ss_pred CCCCCCCCcCC
Confidence 46888888875
No 138
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=36.41 E-value=13 Score=26.92 Aligned_cols=7 Identities=43% Similarity=1.203 Sum_probs=3.8
Q ss_pred ccccccc
Q psy4518 66 NCSRSFN 72 (376)
Q Consensus 66 ~C~~~F~ 72 (376)
.|++.|.
T Consensus 11 ~C~~~f~ 17 (90)
T 1a1h_A 11 SCDRRFS 17 (90)
T ss_dssp SCCCEES
T ss_pred CCCCccC
Confidence 3555554
No 139
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=36.02 E-value=12 Score=27.48 Aligned_cols=11 Identities=27% Similarity=0.785 Sum_probs=7.8
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|+.|++.|.
T Consensus 8 ~~C~~C~~~f~ 18 (95)
T 2yt9_A 8 VACEICGKIFR 18 (95)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCccC
Confidence 35777777775
No 140
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=35.83 E-value=8.3 Score=30.76 Aligned_cols=30 Identities=27% Similarity=0.680 Sum_probs=23.4
Q ss_pred CCcccccccccccccccccccccCccccccccC
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSF 93 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~ 93 (376)
+..|+.|+.+|.+..|---| +-+||-+|..
T Consensus 1 ~hfC~~C~~Pi~iygRmIPC---kHvFCydCa~ 30 (101)
T 3vk6_A 1 VHFCDKCGLPIKVYGRMIPC---KHVFCYDCAI 30 (101)
T ss_dssp CCBCTTTCSBCSEEEEEETT---CCEEEHHHHH
T ss_pred CeecCccCCCeEEEeeeccc---cccHHHHHHH
Confidence 46899999999988886554 4599988754
No 141
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=35.62 E-value=12 Score=30.51 Aligned_cols=10 Identities=40% Similarity=0.856 Sum_probs=7.0
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|+.|++.|.
T Consensus 24 ~C~~C~k~F~ 33 (133)
T 2lt7_A 24 ICIVCKRSYV 33 (133)
T ss_dssp EETTTCCEES
T ss_pred ECCCCCCCcC
Confidence 5777777775
No 142
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=35.52 E-value=14 Score=28.27 Aligned_cols=27 Identities=30% Similarity=0.871 Sum_probs=18.7
Q ss_pred ccccccc---ccccccccccccccCccccc
Q psy4518 63 RCPNCSR---SFNFAKRQHHCRLCGCIMCH 89 (376)
Q Consensus 63 ~C~~C~~---~F~~~~RrHHCR~CG~vvC~ 89 (376)
.|+.|.. -|+-...-.-|..||.+.|.
T Consensus 34 kCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 34 KCAQCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp ECSSSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred ECCCCCCeeEEEecCccEEEccCCCCEEee
Confidence 6999987 45555556667777777763
No 143
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=35.29 E-value=25 Score=26.26 Aligned_cols=12 Identities=33% Similarity=0.656 Sum_probs=10.1
Q ss_pred CCcccccccccc
Q psy4518 61 VPRCPNCSRSFN 72 (376)
Q Consensus 61 v~~C~~C~~~F~ 72 (376)
.-.|+.|++.|.
T Consensus 17 ~~~C~~C~~~f~ 28 (106)
T 2ee8_A 17 EFICKFCGRHFT 28 (106)
T ss_dssp CCBCSSSCCBCS
T ss_pred CeECCCCCCccC
Confidence 357999999997
No 144
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=35.04 E-value=14 Score=26.05 Aligned_cols=9 Identities=44% Similarity=1.209 Sum_probs=4.4
Q ss_pred ccccccccc
Q psy4518 64 CPNCSRSFN 72 (376)
Q Consensus 64 C~~C~~~F~ 72 (376)
|+.|++.|.
T Consensus 4 C~~C~~~f~ 12 (82)
T 2kmk_A 4 CKICGKSFK 12 (82)
T ss_dssp CSSSCCEES
T ss_pred CCCCccccc
Confidence 445555443
No 145
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=35.03 E-value=47 Score=20.33 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.5
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhh
Q psy4518 343 NEVASLENHLKELQEEYFRRQQE 365 (376)
Q Consensus 343 dEV~~L~~NL~EL~~ei~~~~~~ 365 (376)
+||..|..=..+|++..|+++..
T Consensus 6 e~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999998753
No 146
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=35.02 E-value=14 Score=25.68 Aligned_cols=12 Identities=42% Similarity=1.079 Sum_probs=9.4
Q ss_pred CCccc--ccccccc
Q psy4518 61 VPRCP--NCSRSFN 72 (376)
Q Consensus 61 v~~C~--~C~~~F~ 72 (376)
.-.|+ .|++.|.
T Consensus 19 ~~~C~~~~C~k~f~ 32 (73)
T 1f2i_G 19 PYACPVESCDRRFS 32 (73)
T ss_dssp CEECSSTTBCCEES
T ss_pred ccCCcCCCCCCccC
Confidence 35797 5999996
No 147
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=33.76 E-value=14 Score=28.49 Aligned_cols=26 Identities=19% Similarity=0.508 Sum_probs=19.8
Q ss_pred CCcccc--cccccccccccccccccCccccc
Q psy4518 61 VPRCPN--CSRSFNFAKRQHHCRLCGCIMCH 89 (376)
Q Consensus 61 v~~C~~--C~~~F~~~~RrHHCR~CG~vvC~ 89 (376)
...|.. |.+. .+ =-.+|+.||..||.
T Consensus 25 ~~~C~~~~Ck~~-~~--l~f~C~~C~~~FC~ 52 (86)
T 1wfe_A 25 SYSCSFKGCTDV-EL--VAVICPYCEKNFCL 52 (86)
T ss_dssp CEECCSTTCCCE-ES--SCEECTTTCCEECG
T ss_pred CCCCCCcCCCCC-Cc--cceECCCCCccccc
Confidence 457887 9885 33 25599999999994
No 148
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=33.27 E-value=14 Score=28.91 Aligned_cols=37 Identities=27% Similarity=0.674 Sum_probs=22.6
Q ss_pred ccCCCcccCC-CCCcccccccccccccc--cccccccCccc
Q psy4518 50 QAIVPWLDGK-DVPRCPNCSRSFNFAKR--QHHCRLCGCIM 87 (376)
Q Consensus 50 q~~~~W~~d~-~v~~C~~C~~~F~~~~R--rHHCR~CG~vv 87 (376)
+..+.|++.. .--.|+ |++....+.| .+||+.||..-
T Consensus 36 ~H~l~~~~a~KRFFkC~-C~~Rt~sl~r~P~~~C~~Cg~~~ 75 (92)
T 2kwq_A 36 NHDFHWHNGVKRFFKCP-CGNRTISLDRLPKKHCSTCGLFK 75 (92)
T ss_dssp TCCEEEEEEECEEEECT-TSCEEEESSSSCCSCCTTTCSCC
T ss_pred CCceEEEeeeEEEEECC-CCCceeEeeeCCCCCCCCCCCCc
Confidence 3344454322 224687 9886654444 78999999874
No 149
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=33.22 E-value=18 Score=27.69 Aligned_cols=26 Identities=35% Similarity=1.017 Sum_probs=17.0
Q ss_pred ccccccc---ccccccccccccccCcccc
Q psy4518 63 RCPNCSR---SFNFAKRQHHCRLCGCIMC 88 (376)
Q Consensus 63 ~C~~C~~---~F~~~~RrHHCR~CG~vvC 88 (376)
.|+.|.. -|+-..--.-|-.||.+.|
T Consensus 36 kCp~C~~~q~VFSha~t~V~C~~Cg~~L~ 64 (82)
T 3u5c_b 36 KCPGCLNITTVFSHAQTAVTCESCSTILC 64 (82)
T ss_dssp ECTTSCSCEEEESBCSSCCCCSSSCCCCE
T ss_pred ECCCCCCeeEEEecCCeEEEccccCCEEe
Confidence 6999987 4554455556666666665
No 150
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=33.04 E-value=8.6 Score=30.61 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=30.6
Q ss_pred cCCCcccCCCCCccccccccccccc----------ccc----cccccCccccccccCCc
Q psy4518 51 AIVPWLDGKDVPRCPNCSRSFNFAK----------RQH----HCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 51 ~~~~W~~d~~v~~C~~C~~~F~~~~----------RrH----HCR~CG~vvC~~CS~~~ 95 (376)
.+..|..|.....|.+|...|.-.- --. .--.||.+|+..|...+
T Consensus 27 ~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~W 85 (106)
T 3dpl_R 27 AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW 85 (106)
T ss_dssp EEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHH
T ss_pred EeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHH
Confidence 4567888888889999999886320 001 11368999998886543
No 151
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=32.78 E-value=10 Score=30.22 Aligned_cols=29 Identities=28% Similarity=0.634 Sum_probs=21.3
Q ss_pred CcccccccccccccccccccccCccccccccCC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
-.|++|...|.-- .. -.||.+||..|...
T Consensus 19 ~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~ 47 (118)
T 3hct_A 19 YECPICLMALREA---VQ-TPCGHRFCKACIIK 47 (118)
T ss_dssp GBCTTTCSBCSSE---EE-CTTSCEEEHHHHHH
T ss_pred CCCCcCChhhcCe---EE-CCcCChhhHHHHHH
Confidence 3799999887622 11 26999999999654
No 152
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.44 E-value=10 Score=29.15 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=20.7
Q ss_pred Cccccccccccccccccccc-ccCccccccccCC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCR-LCGCIMCHDCSFF 94 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR-~CG~vvC~~CS~~ 94 (376)
-.||+|...|.- -..- .||.+||..|...
T Consensus 8 ~~CPI~~~~~~d----PV~~~~cGh~f~r~cI~~ 37 (94)
T 2yu4_A 8 FTCPITKEEMKK----PVKNKVCGHTYEEDAIVR 37 (94)
T ss_dssp CBCTTTCSBCSS----EEEESSSCCEEEHHHHHH
T ss_pred eECcCcCchhcC----CEEcCCCCCeecHHHHHH
Confidence 379999987761 1112 4999999999654
No 153
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=31.54 E-value=15 Score=19.98 Aligned_cols=10 Identities=40% Similarity=1.075 Sum_probs=8.5
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|+.|++.|.
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 1ard_A 4 VCEVCTRAFA 13 (29)
T ss_dssp BCTTTCCBCS
T ss_pred ECCCCCcccC
Confidence 6889999886
No 154
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=37.74 E-value=10 Score=20.51 Aligned_cols=10 Identities=30% Similarity=0.949 Sum_probs=8.7
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|+.|++.|.
T Consensus 4 ~C~~C~k~f~ 13 (26)
T 2lvu_A 4 VCERCGKRFV 13 (26)
Confidence 6999999987
No 155
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=31.22 E-value=34 Score=35.54 Aligned_cols=46 Identities=13% Similarity=0.347 Sum_probs=34.3
Q ss_pred cCCCccc--CCCCCcccccccc-cccccccccccccCccccccccCCcc
Q psy4518 51 AIVPWLD--GKDVPRCPNCSRS-FNFAKRQHHCRLCGCIMCHDCSFFLP 96 (376)
Q Consensus 51 ~~~~W~~--d~~v~~C~~C~~~-F~~~~RrHHCR~CG~vvC~~CS~~~~ 96 (376)
....|+. -.....|..|++. +++..--.+|..||..|-..|+..++
T Consensus 101 ~~h~~~~~~~~~~~~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~v~ 149 (674)
T 3pfq_A 101 SKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVP 149 (674)
T ss_dssp -CCCCCEECCSSCCCCSSSCSCCBBSSSCEECCSSSCCCBCSSTTSSSC
T ss_pred CCcceeecCCCCCCCCCccccccchhhcCccccccCCcchhhhhhhccC
Confidence 3457763 3456799999885 56777789999999999888877543
No 156
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=31.10 E-value=30 Score=25.89 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=13.9
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhhh
Q psy4518 343 NEVASLENHLKELQEEYFRRQQEQ 366 (376)
Q Consensus 343 dEV~~L~~NL~EL~~ei~~~~~~~ 366 (376)
|||..|..-+.||...+.+++.++
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN 38 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLEREN 38 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666555555555
No 157
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.87 E-value=14 Score=20.13 Aligned_cols=10 Identities=20% Similarity=0.647 Sum_probs=8.7
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|+.|++.|.
T Consensus 5 ~C~~C~k~f~ 14 (27)
T 2kvh_A 5 SCSLCPQRSR 14 (27)
T ss_dssp ECSSSSCEES
T ss_pred cCCCcChhhC
Confidence 6999999987
No 158
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=30.85 E-value=11 Score=35.17 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=21.1
Q ss_pred CcccccccccccccccccccccCccccccccC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSF 93 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~ 93 (376)
-.||+|...|.-=.+ ...||.+||..|-.
T Consensus 182 l~CPIcl~~f~DPVt---s~~CGHsFcR~cI~ 210 (267)
T 3htk_C 182 LTCPITCKPYEAPLI---SRKCNHVFDRDGIQ 210 (267)
T ss_dssp SBCTTTSSBCSSEEE---ESSSCCEEEHHHHH
T ss_pred eECcCccCcccCCee---eCCCCCcccHHHHH
Confidence 479999998862111 24699999999965
No 159
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=30.84 E-value=16 Score=19.57 Aligned_cols=10 Identities=50% Similarity=1.099 Sum_probs=8.3
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|..|++.|.
T Consensus 3 ~C~~C~k~f~ 12 (27)
T 1znf_A 3 KCGLCERSFV 12 (27)
T ss_dssp BCSSSCCBCS
T ss_pred cCCCCCCcCC
Confidence 5888998886
No 160
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=30.72 E-value=10 Score=30.16 Aligned_cols=35 Identities=23% Similarity=0.536 Sum_probs=23.1
Q ss_pred CCCcccccccccccc---cccccccccCccccccccCC
Q psy4518 60 DVPRCPNCSRSFNFA---KRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 60 ~v~~C~~C~~~F~~~---~RrHHCR~CG~vvC~~CS~~ 94 (376)
+...|++|...|.-. .+.-..-.||.+||..|...
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 108 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 108 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHH
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHH
Confidence 345788888877632 22224557899999998654
No 161
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.71 E-value=19 Score=25.74 Aligned_cols=11 Identities=27% Similarity=0.996 Sum_probs=9.6
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|..|++.|.
T Consensus 16 ~~C~~C~~~f~ 26 (86)
T 1x6h_A 16 YACSHCDKTFR 26 (86)
T ss_dssp EECSSSSCEES
T ss_pred CcCCCCCCccC
Confidence 47999999997
No 162
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=30.71 E-value=16 Score=19.72 Aligned_cols=10 Identities=50% Similarity=1.617 Sum_probs=8.1
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|+.|++.|.
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 2m0e_A 4 KCPHCDKKFN 13 (29)
T ss_dssp CCSSCCCCCC
T ss_pred cCCCCCcccC
Confidence 5888888886
No 163
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.55 E-value=8.8 Score=30.13 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=10.0
Q ss_pred CCcccccccccc
Q psy4518 61 VPRCPNCSRSFN 72 (376)
Q Consensus 61 v~~C~~C~~~F~ 72 (376)
.-.|..|++.|.
T Consensus 18 py~C~~Cgk~F~ 29 (102)
T 2ghf_A 18 GYECKYCTFQTP 29 (102)
T ss_dssp SEECSSCSCEES
T ss_pred CcCCCCCCCccC
Confidence 347999999997
No 164
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=30.46 E-value=15 Score=35.33 Aligned_cols=37 Identities=22% Similarity=0.583 Sum_probs=17.7
Q ss_pred CCcccCCCC-Cccccccc-c--c--ccccccccccccCccccc
Q psy4518 53 VPWLDGKDV-PRCPNCSR-S--F--NFAKRQHHCRLCGCIMCH 89 (376)
Q Consensus 53 ~~W~~d~~v-~~C~~C~~-~--F--~~~~RrHHCR~CG~vvC~ 89 (376)
..|.+|=.+ ..||.|+. + + ..-..-.-|..||-|+=+
T Consensus 12 ~~~~~~l~~~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e 54 (345)
T 4bbr_M 12 GRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSD 54 (345)
T ss_dssp ----------CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEES
T ss_pred cccCcccccCCcCCCCCCCCCceeEECCCCcEEeCCCCCCccC
Confidence 467777654 47999996 2 2 234556667777776643
No 165
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=30.29 E-value=24 Score=28.25 Aligned_cols=23 Identities=22% Similarity=0.586 Sum_probs=13.3
Q ss_pred Cccccccccc-ccccccccccccC
Q psy4518 62 PRCPNCSRSF-NFAKRQHHCRLCG 84 (376)
Q Consensus 62 ~~C~~C~~~F-~~~~RrHHCR~CG 84 (376)
..|..||-.| .-+.+...|..|+
T Consensus 68 ~~C~~CG~~F~~~~~kPsrCP~Ck 91 (105)
T 2gmg_A 68 AQCRKCGFVFKAEINIPSRCPKCK 91 (105)
T ss_dssp CBBTTTCCBCCCCSSCCSSCSSSC
T ss_pred cChhhCcCeecccCCCCCCCcCCC
Confidence 3688888877 2334444555544
No 166
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.27 E-value=14 Score=20.13 Aligned_cols=10 Identities=30% Similarity=1.059 Sum_probs=8.8
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|+.|++.|+
T Consensus 5 ~C~~C~k~f~ 14 (28)
T 2kvf_A 5 SCSVCGKRFS 14 (28)
T ss_dssp ECSSSCCEES
T ss_pred cCCCCCcccC
Confidence 6999999997
No 167
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=30.11 E-value=49 Score=24.51 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhhhcc
Q psy4518 344 EVASLENHLKELQEEYFRRQQEQQTE 369 (376)
Q Consensus 344 EV~~L~~NL~EL~~ei~~~~~~~~~~ 369 (376)
||.+++.||.+|+.+|..++...-+.
T Consensus 23 ev~t~~~~l~~~e~~vqaL~~ag~ip 48 (74)
T 1avy_A 23 EVNTAKGNISSLQGDVQALQEAGYIP 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred eeccccchhhhhhhhhHHHHhcCCCC
Confidence 78999999999999999999765443
No 168
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=30.01 E-value=20 Score=25.83 Aligned_cols=25 Identities=24% Similarity=0.790 Sum_probs=18.1
Q ss_pred CCcccccccccccccccccccccCccccc
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCH 89 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~ 89 (376)
...|+.|+. .++ ++.|..||...-+
T Consensus 6 mr~C~~Cgv-YTL---k~~CP~CG~~T~~ 30 (60)
T 2apo_B 6 MKKCPKCGL-YTL---KEICPKCGEKTVI 30 (60)
T ss_dssp CEECTTTCC-EES---SSBCSSSCSBCBC
T ss_pred ceeCCCCCC-Eec---cccCcCCCCcCCC
Confidence 457999976 233 8889999987533
No 169
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=29.82 E-value=26 Score=28.78 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=9.4
Q ss_pred ccccchHHHHHHHHHHh
Q psy4518 118 ANSDLNLRLLESREVLK 134 (376)
Q Consensus 118 RvC~~C~~~l~~r~~~~ 134 (376)
-.|..|.....-+.+..
T Consensus 79 ~lC~~CVr~RI~rAFLi 95 (121)
T 3u5e_g 79 SRCANCVKERIIRAFLI 95 (121)
T ss_dssp TSCSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 45777766555444433
No 170
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=29.65 E-value=10 Score=26.29 Aligned_cols=27 Identities=26% Similarity=0.909 Sum_probs=19.5
Q ss_pred CcccccccccccccccccccccCcc-ccccc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCI-MCHDC 91 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~v-vC~~C 91 (376)
..|-.|++. + .+|.||..|... +|..|
T Consensus 7 ~~Cd~C~~~--i-g~R~~C~~C~dyDLC~~C 34 (52)
T 1tot_A 7 YTCNECKHH--V-ETRWHCTVCEDYDLCINC 34 (52)
T ss_dssp EEETTTTEE--E-SSEEEESSSSSCEECHHH
T ss_pred EECCCCCCC--C-cceEEcCCCCCchhHHHH
Confidence 468999986 3 567999888554 66655
No 171
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=29.24 E-value=17 Score=28.45 Aligned_cols=16 Identities=38% Similarity=0.860 Sum_probs=8.4
Q ss_pred ccccccccc--ccccCcc
Q psy4518 71 FNFAKRQHH--CRLCGCI 86 (376)
Q Consensus 71 F~~~~RrHH--CR~CG~v 86 (376)
|+-...+.| ||.||+.
T Consensus 8 fGKr~~KtHtlCrRCG~~ 25 (94)
T 4a18_A 8 FGKRHQKTHTLCRRCGKA 25 (94)
T ss_dssp HTTCCCCCEEECTTTCSE
T ss_pred ccccCCCccceecCcCch
Confidence 443333344 7777765
No 172
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=29.20 E-value=12 Score=29.46 Aligned_cols=29 Identities=17% Similarity=0.465 Sum_probs=21.3
Q ss_pred CcccccccccccccccccccccCccccccccCC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
..|++|...|.--.. -.||.+||..|...
T Consensus 24 ~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~ 52 (116)
T 1rmd_A 24 ISCQICEHILADPVE----TSCKHLFCRICILR 52 (116)
T ss_dssp TBCTTTCSBCSSEEE----CTTSCEEEHHHHHH
T ss_pred CCCCCCCcHhcCcEE----cCCCCcccHHHHHH
Confidence 379999988762111 36999999999654
No 173
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.90 E-value=16 Score=27.70 Aligned_cols=32 Identities=22% Similarity=0.591 Sum_probs=21.4
Q ss_pred CCcccccccccccccccccccccCccccccccC
Q psy4518 61 VPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSF 93 (376)
Q Consensus 61 v~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~ 93 (376)
...|++|...|..-. -..-..||..||..|..
T Consensus 5 ~~~C~IC~~~~~~~~-~~~l~~CgH~FC~~Cl~ 36 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQ-MTTIAQCQCIFCTLCLK 36 (94)
T ss_dssp BCCCSSSCCCCBGGG-EEEETTTTEEEEHHHHH
T ss_pred CcCCcccCccccccc-ceEcCCCCCcccHHHHH
Confidence 347999988775211 11123599999999976
No 174
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.88 E-value=24 Score=24.78 Aligned_cols=10 Identities=60% Similarity=1.577 Sum_probs=5.4
Q ss_pred cccc--cccccc
Q psy4518 63 RCPN--CSRSFN 72 (376)
Q Consensus 63 ~C~~--C~~~F~ 72 (376)
.|+. |++.|.
T Consensus 40 ~C~~~~C~k~f~ 51 (79)
T 2dlk_A 40 SCPEPACGKSFN 51 (79)
T ss_dssp ECSCTTTCCEES
T ss_pred ECCCCCCcCccC
Confidence 4555 655554
No 175
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.86 E-value=18 Score=19.91 Aligned_cols=10 Identities=40% Similarity=1.065 Sum_probs=8.6
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|+.|++.|.
T Consensus 4 ~C~~C~k~f~ 13 (30)
T 1paa_A 4 ACGLCNRAFT 13 (30)
T ss_dssp BCTTTCCBCS
T ss_pred CCcccCcccC
Confidence 6899999887
No 176
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=28.63 E-value=16 Score=35.94 Aligned_cols=30 Identities=23% Similarity=0.575 Sum_probs=23.0
Q ss_pred CcccccccccccccccccccccCccccccccCCc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
..|++|...|. ....-.||.+||..|...+
T Consensus 333 ~~C~ICle~~~----~pv~lpCGH~FC~~Ci~~w 362 (389)
T 2y1n_A 333 QLCKICAENDK----DVKIEPCGHLMCTSCLTSW 362 (389)
T ss_dssp SBCTTTSSSBC----CEEEETTCCEECHHHHHHH
T ss_pred CCCCccCcCCC----CeEEeCCCChhhHHHHHHH
Confidence 58999988773 2345689999999997543
No 177
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.48 E-value=21 Score=27.06 Aligned_cols=10 Identities=40% Similarity=1.082 Sum_probs=7.2
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.| .|++.|.
T Consensus 11 ~~C-~C~~~f~ 20 (110)
T 2csh_A 11 YPC-QCGKSFT 20 (110)
T ss_dssp EEC-TTSCEES
T ss_pred Eec-cCCCccC
Confidence 367 7888876
No 178
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.95 E-value=19 Score=27.20 Aligned_cols=27 Identities=19% Similarity=0.485 Sum_probs=17.2
Q ss_pred CCcccccccccccc--c--------ccccccccCccc
Q psy4518 61 VPRCPNCSRSFNFA--K--------RQHHCRLCGCIM 87 (376)
Q Consensus 61 v~~C~~C~~~F~~~--~--------RrHHCR~CG~vv 87 (376)
.-.|+.|++.|... . +.+.|..||..|
T Consensus 16 ~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f 52 (107)
T 1wjp_A 16 VYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRF 52 (107)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCB
T ss_pred CeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCcc
Confidence 45799999999731 1 234566666655
No 179
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=27.90 E-value=16 Score=19.91 Aligned_cols=10 Identities=40% Similarity=1.285 Sum_probs=8.5
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|+.|++.|.
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 1rik_A 4 ACPECPKRFM 13 (29)
T ss_dssp ECSSSSCEES
T ss_pred cCCCCCchhC
Confidence 5889999886
No 180
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=27.84 E-value=85 Score=22.60 Aligned_cols=39 Identities=21% Similarity=0.444 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHH
Q psy4518 321 PLVQQITNIKQFIKEARMAHRYNEVASLENHLKELQEEY 359 (376)
Q Consensus 321 ~L~EQ~~~v~~~I~~A~~~rrfdEV~~L~~NL~EL~~ei 359 (376)
-+.+++..++.-..+|-+.-.||+.+.|-.-+..|+..+
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~l 59 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999999999998887653
No 181
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.21 E-value=14 Score=20.25 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=8.7
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|+.|++.|.
T Consensus 5 ~C~~C~k~f~ 14 (27)
T 2kvg_A 5 RCPLCRAGCP 14 (27)
T ss_dssp EETTTTEEES
T ss_pred CCCCCCcccC
Confidence 6999999987
No 182
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=27.17 E-value=21 Score=27.17 Aligned_cols=30 Identities=30% Similarity=0.685 Sum_probs=24.0
Q ss_pred cccccccccccccccccccccCc----cccccccC
Q psy4518 63 RCPNCSRSFNFAKRQHHCRLCGC----IMCHDCSF 93 (376)
Q Consensus 63 ~C~~C~~~F~~~~RrHHCR~CG~----vvC~~CS~ 93 (376)
.|-.|++ ..+.-+|++|..|.. -+|..|-.
T Consensus 23 ~Cd~C~~-~pI~G~RykC~~C~d~~~yDLC~~C~~ 56 (82)
T 2fc7_A 23 KCDNCGI-EPIQGVRWHCQDCPPEMSLDFCDSCSD 56 (82)
T ss_dssp CCSSSCC-SSEESCEEEESSSCSSSCCEEEGGGTT
T ss_pred CCCCCCC-CcceeceEECCcCCCCcceecHHHHHh
Confidence 6999986 346779999999986 59999954
No 183
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=27.05 E-value=80 Score=18.53 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=19.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhh
Q psy4518 344 EVASLENHLKELQEEYFRRQQEQ 366 (376)
Q Consensus 344 EV~~L~~NL~EL~~ei~~~~~~~ 366 (376)
||-.|.+|.+.|++|.-.++-+-
T Consensus 2 evykldanvkrlekevgklegev 24 (28)
T 4dac_A 2 EVYKLDANVKRLEKEVGKLEGEV 24 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeeccccHHHHHHHHhhhhhhh
Confidence 78889999999999998876543
No 184
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.94 E-value=25 Score=27.36 Aligned_cols=13 Identities=31% Similarity=0.946 Sum_probs=7.7
Q ss_pred CCCcccccccccc
Q psy4518 60 DVPRCPNCSRSFN 72 (376)
Q Consensus 60 ~v~~C~~C~~~F~ 72 (376)
.++.|..|+....
T Consensus 32 ~~pkC~~cg~~L~ 44 (89)
T 3j21_d 32 KIAHCAMCGRPLN 44 (89)
T ss_dssp CCCBCSSSCCBCT
T ss_pred CCCCCCCCCCccC
Confidence 3446777766543
No 185
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=26.91 E-value=30 Score=25.38 Aligned_cols=31 Identities=26% Similarity=0.689 Sum_probs=23.0
Q ss_pred CCCCCccccccccccccccccccccc-CccccccccC
Q psy4518 58 GKDVPRCPNCSRSFNFAKRQHHCRLC-GCIMCHDCSF 93 (376)
Q Consensus 58 d~~v~~C~~C~~~F~~~~RrHHCR~C-G~vvC~~CS~ 93 (376)
+.+-+.|.+|...=+ ..|.-| |-++|..|-.
T Consensus 5 ~ee~pWC~ICneDAt-----lrC~gCdgDLYC~rC~r 36 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT-----LRCAGCDGDLYCARCFR 36 (67)
T ss_dssp CCCCSSCTTTCSCCC-----EEETTTTSEEECSSHHH
T ss_pred CcCCCeeEEeCCCCe-----EEecCCCCceehHHHHH
Confidence 344567899987532 468888 9999999965
No 186
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=26.77 E-value=20 Score=21.05 Aligned_cols=11 Identities=55% Similarity=1.386 Sum_probs=9.6
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|+.|++.|.
T Consensus 12 ~~C~~C~k~f~ 22 (37)
T 1p7a_A 12 FQCPDCDRSFS 22 (37)
T ss_dssp BCCTTTCCCBS
T ss_pred ccCCCCCcccC
Confidence 47999999997
No 187
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=26.69 E-value=21 Score=19.41 Aligned_cols=10 Identities=20% Similarity=0.554 Sum_probs=8.3
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|+.|++.|.
T Consensus 4 ~C~~C~k~f~ 13 (30)
T 1klr_A 4 QCQYCEFRSA 13 (30)
T ss_dssp CCSSSSCCCS
T ss_pred cCCCCCCccC
Confidence 6888888886
No 188
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=26.68 E-value=17 Score=20.93 Aligned_cols=10 Identities=40% Similarity=1.245 Sum_probs=7.6
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|..|++.|.
T Consensus 4 ~C~~C~k~f~ 13 (32)
T 2kfq_A 4 ACPACPKRFM 13 (32)
T ss_dssp SSSSSCTTHH
T ss_pred CCCCCCcccC
Confidence 5778888776
No 189
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=26.63 E-value=15 Score=30.52 Aligned_cols=29 Identities=21% Similarity=0.466 Sum_probs=21.5
Q ss_pred CcccccccccccccccccccccCccccccccCC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
-.|++|...|.-- .- -.||.+||..|...
T Consensus 32 ~~C~IC~~~~~~p---v~-~~CgH~FC~~Ci~~ 60 (141)
T 3knv_A 32 YLCSACRNVLRRP---FQ-AQCGHRYCSFCLAS 60 (141)
T ss_dssp GBCTTTCSBCSSE---EE-CTTSCEEEHHHHHH
T ss_pred cCCCCCChhhcCc---EE-CCCCCccCHHHHHH
Confidence 4799999877522 11 37999999999764
No 190
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=32.32 E-value=14 Score=20.35 Aligned_cols=10 Identities=40% Similarity=1.045 Sum_probs=8.8
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|+.|++.|.
T Consensus 5 ~C~~C~k~f~ 14 (30)
T 2lvr_A 5 VCIHCQRQFA 14 (30)
Confidence 6999999987
No 191
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=26.24 E-value=16 Score=23.03 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=9.1
Q ss_pred cccccccccCccc
Q psy4518 75 KRQHHCRLCGCIM 87 (376)
Q Consensus 75 ~RrHHCR~CG~vv 87 (376)
.=+.|||.|..-+
T Consensus 7 kikqhcrfckkky 19 (37)
T 2elu_A 7 GIKQHCRFCKKKY 19 (37)
T ss_dssp CCCCEETTTTEEC
T ss_pred HHHHHHHHHHHHH
Confidence 3478999986644
No 192
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=26.22 E-value=16 Score=28.56 Aligned_cols=7 Identities=43% Similarity=0.989 Sum_probs=5.0
Q ss_pred ccccCcc
Q psy4518 80 CRLCGCI 86 (376)
Q Consensus 80 CR~CG~v 86 (376)
||.||+.
T Consensus 19 CrRCG~~ 25 (94)
T 3iz5_l 19 CVRCGRR 25 (94)
T ss_dssp CTTTCSE
T ss_pred ecCcCch
Confidence 7777766
No 193
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.08 E-value=14 Score=20.33 Aligned_cols=10 Identities=30% Similarity=1.072 Sum_probs=8.7
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|..|++.|.
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 2lvt_A 4 QCVMCGKAFT 13 (29)
Confidence 6999999987
No 194
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=25.64 E-value=30 Score=27.77 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=19.3
Q ss_pred CCcccccccccccccc------cccccccCcccc
Q psy4518 61 VPRCPNCSRSFNFAKR------QHHCRLCGCIMC 88 (376)
Q Consensus 61 v~~C~~C~~~F~~~~R------rHHCR~CG~vvC 88 (376)
...||.|+.-.-.-.- +..|+.||.+.=
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 4589999985543221 688888888763
No 195
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.32 E-value=19 Score=19.58 Aligned_cols=10 Identities=50% Similarity=1.252 Sum_probs=8.5
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|..|++.|.
T Consensus 5 ~C~~C~~~f~ 14 (30)
T 2m0d_A 5 QCDYCGRSFS 14 (30)
T ss_dssp ECTTTCCEES
T ss_pred cCCCCCcccC
Confidence 6899999886
No 196
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=25.06 E-value=23 Score=20.57 Aligned_cols=10 Identities=40% Similarity=1.285 Sum_probs=8.3
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|..|++.|+
T Consensus 4 ~C~~C~k~F~ 13 (33)
T 1rim_A 4 ACPECPKRFM 13 (33)
T ss_dssp CCSSSCCCCS
T ss_pred cCCCCCchhC
Confidence 5888988886
No 197
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=24.94 E-value=21 Score=32.33 Aligned_cols=23 Identities=26% Similarity=0.644 Sum_probs=13.6
Q ss_pred cccccccc--ccccc-ccccccccCc
Q psy4518 63 RCPNCSRS--FNFAK-RQHHCRLCGC 85 (376)
Q Consensus 63 ~C~~C~~~--F~~~~-RrHHCR~CG~ 85 (376)
.||.|+.+ |.+.. .-.+|..||.
T Consensus 16 ~CP~Cg~~d~~~~~~dg~~~C~~Cg~ 41 (255)
T 1nui_A 16 PCDNCGSSDGNSLFSDGHTFCYVCEK 41 (255)
T ss_dssp CCSSSCCSSCEEEETTSCEEETTTCC
T ss_pred cCCCCCCCCCceEeCCCCeecccCCC
Confidence 79999874 54332 1245666654
No 198
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.93 E-value=20 Score=19.40 Aligned_cols=10 Identities=30% Similarity=1.215 Sum_probs=8.2
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|..|++.|.
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 2m0f_A 4 KCRECGKQFT 13 (29)
T ss_dssp ECTTTSCEES
T ss_pred cCCCCCCccC
Confidence 5888988886
No 199
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=24.90 E-value=27 Score=21.63 Aligned_cols=21 Identities=29% Similarity=0.751 Sum_probs=15.0
Q ss_pred cccccccccccccccccccccCc
Q psy4518 63 RCPNCSRSFNFAKRQHHCRLCGC 85 (376)
Q Consensus 63 ~C~~C~~~F~~~~RrHHCR~CG~ 85 (376)
.|+.|+. .-+.||..|-.||.
T Consensus 7 ~C~~C~~--~Nfa~r~~C~~C~~ 27 (32)
T 2lk0_A 7 LCNKCCL--NNFRKRLKCFRCGA 27 (32)
T ss_dssp ECTTTCC--EEETTCCBCTTTCC
T ss_pred CcCcCcC--CcChhcceecCCCC
Confidence 4777864 34667788888875
No 200
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.68 E-value=65 Score=26.18 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.9
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhhhh
Q psy4518 343 NEVASLENHLKELQEEYFRRQQEQQ 367 (376)
Q Consensus 343 dEV~~L~~NL~EL~~ei~~~~~~~~ 367 (376)
+|+.+|...|++...|++++...+.
T Consensus 78 gEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 78 GEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhch
Confidence 7999999999999999999988774
No 201
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.55 E-value=19 Score=24.75 Aligned_cols=10 Identities=30% Similarity=0.999 Sum_probs=8.3
Q ss_pred cccccccccc
Q psy4518 63 RCPNCSRSFN 72 (376)
Q Consensus 63 ~C~~C~~~F~ 72 (376)
.|..|++.|.
T Consensus 12 ~C~~C~k~f~ 21 (66)
T 2eod_A 12 PCTYCTKEFV 21 (66)
T ss_dssp ECSSSCCEEE
T ss_pred eccccCCccC
Confidence 6888888886
No 202
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.18 E-value=21 Score=20.54 Aligned_cols=11 Identities=27% Similarity=0.627 Sum_probs=9.5
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|..|++.|.
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 2elx_A 8 YVCALCLKKFV 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCcchhC
Confidence 47999999997
No 203
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=23.68 E-value=23 Score=25.98 Aligned_cols=29 Identities=24% Similarity=0.575 Sum_probs=19.0
Q ss_pred CcccccccccccccccccccccCccccccccCCcc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFLP 96 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~~ 96 (376)
-.||.|..+..+..- =|..+|..|....|
T Consensus 9 L~CP~ck~~L~~~~~------~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKS------KDELICKGDRLAFP 37 (68)
T ss_dssp CBCTTTCCBCEEETT------TTEEEETTTTEEEE
T ss_pred eECCCCCCcCeEeCC------CCEEEcCCCCcEec
Confidence 379999987765432 26677777755433
No 204
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=23.56 E-value=24 Score=25.93 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=21.3
Q ss_pred CcccccccccccccccccccccCccccccccCCccc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFLPL 97 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~~l 97 (376)
-.||.|..+..+.. .+|..+|..|....|+
T Consensus 9 L~CP~ck~~L~~~~------~~~~LiC~~cg~~YPI 38 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQ------DKQELWSRQAKLAYPI 38 (68)
T ss_dssp CBCSSSCCBCEEET------TTTEEEETTTTEEEEE
T ss_pred eECCCCCCcCeEeC------CCCEEEcCCCCcEecC
Confidence 47999998776532 3588899888664443
No 205
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=23.54 E-value=21 Score=27.39 Aligned_cols=30 Identities=27% Similarity=0.728 Sum_probs=18.7
Q ss_pred CcccccccccccccccccccccC--ccccccccCCc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCG--CIMCHDCSFFL 95 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG--~vvC~~CS~~~ 95 (376)
-.|+ ||..|.++..--. -| -+.|.+||..+
T Consensus 24 ypCr-CGd~F~it~edL~---~ge~iv~C~sCSL~I 55 (83)
T 1yop_A 24 YPCP-CGDRFQIYLDDMF---EGEKVAVCPSCSLMI 55 (83)
T ss_dssp EEET-TTEEEEEEHHHHH---TTCCEEECSSSCCEE
T ss_pred EeCC-CCCeEEECHHHHh---CCCEEEECCCCccEE
Confidence 4587 8888876543221 12 46789998854
No 206
>1pzw_A Transcription factor grauzone; dimerization, transcription regulation, treble-CLEF zinc FIN transcription; 2.00A {Drosophila melanogaster} SCOP: g.39.1.10
Probab=23.54 E-value=1.5e+02 Score=21.13 Aligned_cols=21 Identities=0% Similarity=-0.132 Sum_probs=15.9
Q ss_pred CCCcccccchHHHHHHHHHHh
Q psy4518 114 LSASANSDLNLRLLESREVLK 134 (376)
Q Consensus 114 ~~~vRvC~~C~~~l~~r~~~~ 134 (376)
.-|..+|..|...|.....|.
T Consensus 46 ~lP~~IC~~C~~~l~~~~~Fr 66 (80)
T 1pzw_A 46 EISKVICNVCWTQVSEFHQFY 66 (80)
T ss_dssp SSCSEEEHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHH
Confidence 457889999999997654443
No 207
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=23.36 E-value=18 Score=31.58 Aligned_cols=29 Identities=3% Similarity=-0.305 Sum_probs=20.8
Q ss_pred CcccccccccccccccccccccCccccccccCC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
-.||+|..-|. --.+-.||.+||..|-..
T Consensus 107 f~CPI~~elm~----DPV~~~~Ghtfer~~I~~ 135 (179)
T 2f42_A 107 LCGKISFELMR----EPCITPSGITYDRKDIEE 135 (179)
T ss_dssp GBCTTTCSBCS----SEEECTTSCEEEHHHHHH
T ss_pred hcccCccccCC----CCeECCCCCEECHHHHHH
Confidence 47999998776 122235999999998653
No 208
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.01 E-value=38 Score=19.51 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=8.1
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|..|++.|.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elr_A 10 HLCDMCGKKFK 20 (36)
T ss_dssp CBCTTTCCBCS
T ss_pred eecCcCCCCcC
Confidence 46888888776
No 209
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.33 E-value=28 Score=25.66 Aligned_cols=29 Identities=14% Similarity=0.426 Sum_probs=19.0
Q ss_pred CcccccccccccccccccccccCccccccccCCcc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFLP 96 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~~ 96 (376)
-.||.|..+..+..- =|..+|..|....+
T Consensus 9 L~CP~ck~~L~~~~~------~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 9 LACPICKGPLKLSAD------KTELISKGAGLAYP 37 (69)
T ss_dssp CCCTTTCCCCEECTT------SSEEEETTTTEEEE
T ss_pred eeCCCCCCcCeEeCC------CCEEEcCCCCcEec
Confidence 379999987764332 26777777765433
No 210
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=22.10 E-value=29 Score=30.60 Aligned_cols=26 Identities=27% Similarity=0.673 Sum_probs=13.7
Q ss_pred Ccccccccc-cc-cccccccccccCccc
Q psy4518 62 PRCPNCSRS-FN-FAKRQHHCRLCGCIM 87 (376)
Q Consensus 62 ~~C~~C~~~-F~-~~~RrHHCR~CG~vv 87 (376)
..||.|+.. |= --.-||||-.||..+
T Consensus 114 ~~Cp~Cg~g~fma~h~dR~~CGkC~~t~ 141 (189)
T 2xzm_9 114 KGCPKCGPGIFMAKHYDRHYCGKCHLTL 141 (189)
T ss_dssp EECSTTCSSCEEEECSSCEEETTTCCCB
T ss_pred ccCCccCCCccccCccCCCccCCceeEE
Confidence 578888853 21 122345555555554
No 211
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=22.06 E-value=17 Score=28.12 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=13.5
Q ss_pred Cccccccccccccccccc
Q psy4518 62 PRCPNCSRSFNFAKRQHH 79 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHH 79 (376)
-.|..||++|..+. ||-
T Consensus 22 iiClecGK~fK~Lk-RHL 38 (87)
T 2jsp_A 22 IVCLECGGSFKSLK-RHL 38 (87)
T ss_dssp EECTBTCCEESBHH-HHH
T ss_pred eEecccchhhHHHH-HHH
Confidence 37999999999776 443
No 212
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.93 E-value=24 Score=20.43 Aligned_cols=11 Identities=36% Similarity=0.887 Sum_probs=9.6
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|+.|++.|.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elt_A 10 YKCPQCSYASA 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred CCCCCCCcccC
Confidence 47999999997
No 213
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=21.92 E-value=32 Score=24.61 Aligned_cols=24 Identities=29% Similarity=0.869 Sum_probs=15.4
Q ss_pred CCCCCcccccccccccccccccccccC
Q psy4518 58 GKDVPRCPNCSRSFNFAKRQHHCRLCG 84 (376)
Q Consensus 58 d~~v~~C~~C~~~F~~~~RrHHCR~CG 84 (376)
-.....|+.|+.. ....|-|..||
T Consensus 27 ~p~l~~c~~cG~~---~~pH~vc~~CG 50 (60)
T 2zjr_Z 27 APNLTECPQCHGK---KLSHHICPNCG 50 (60)
T ss_dssp CCCCEECTTTCCE---ECTTBCCTTTC
T ss_pred CCCceECCCCCCE---eCCceEcCCCC
Confidence 3455689999974 34445566666
No 214
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=21.85 E-value=21 Score=29.99 Aligned_cols=31 Identities=23% Similarity=0.628 Sum_probs=19.9
Q ss_pred CcccccccccccccccccccccCccccccccCCc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~ 95 (376)
..|+ |+..|.+...-.+.. -.|.|.+||..+
T Consensus 113 ~~Cr-CG~~f~i~~~~l~~~--~~v~C~sCSl~~ 143 (155)
T 2l6l_A 113 LSCR-CGGKYSVSKDEAEEV--SLISCDTCSLII 143 (155)
T ss_dssp EECS-SSCEEEEETTHHHHC--CEEECSSSSCEE
T ss_pred EcCC-CCCeEEecHHHhCCC--CEEECCCCceEE
Confidence 5687 888887655433321 357789998743
No 215
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.53 E-value=27 Score=25.55 Aligned_cols=29 Identities=7% Similarity=0.185 Sum_probs=19.2
Q ss_pred CcccccccccccccccccccccCccccccccCCcc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFLP 96 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~~ 96 (376)
-.||.|..+..+..- =|..+|..|....|
T Consensus 11 L~CP~ck~~L~~~~~------~g~LvC~~c~~~YP 39 (67)
T 2jny_A 11 LACPKDKGPLRYLES------EQLLVNERLNLAYR 39 (67)
T ss_dssp CBCTTTCCBCEEETT------TTEEEETTTTEEEE
T ss_pred hCCCCCCCcCeEeCC------CCEEEcCCCCcccc
Confidence 379999997765432 26677777765433
No 216
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=21.18 E-value=34 Score=32.90 Aligned_cols=28 Identities=21% Similarity=0.555 Sum_probs=20.6
Q ss_pred CcccccccccccccccccccccCcc-ccccccC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCI-MCHDCSF 93 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~v-vC~~CS~ 93 (376)
..|++|...|.-. ---.||.+ ||..|..
T Consensus 296 ~~C~IC~~~~~~~----v~lpCgH~~fC~~C~~ 324 (345)
T 3t6p_A 296 RTCKVCMDKEVSV----VFIPCGHLVVCQECAP 324 (345)
T ss_dssp CBCTTTSSSBCCE----EEETTCCEEECTTTGG
T ss_pred CCCCccCCcCCce----EEcCCCChhHhHHHHh
Confidence 4799999887521 11369999 9999965
No 217
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=21.14 E-value=38 Score=27.22 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=15.3
Q ss_pred cCCCcccCC-CCCcccccccccc
Q psy4518 51 AIVPWLDGK-DVPRCPNCSRSFN 72 (376)
Q Consensus 51 ~~~~W~~d~-~v~~C~~C~~~F~ 72 (376)
-...|.++. ..-.|..|++.|.
T Consensus 14 ~~c~~~~~~~~~~~C~~C~~~f~ 36 (155)
T 2rpc_A 14 LSCKWIDEAQLSRPKKSCDRTFS 36 (155)
T ss_dssp BCCCBCCTTCCSSSCCCCCCCBS
T ss_pred eeEEeechhhcccccccCCcccC
Confidence 345675433 4467999999997
No 218
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.07 E-value=26 Score=20.45 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=9.5
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|+.|++.|.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2els_A 10 FTCEYCNKVFK 20 (36)
T ss_dssp EECTTTCCEES
T ss_pred EECCCCCceeC
Confidence 47999999997
No 219
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=20.61 E-value=37 Score=27.77 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=7.2
Q ss_pred CCCccccccccc
Q psy4518 60 DVPRCPNCSRSF 71 (376)
Q Consensus 60 ~v~~C~~C~~~F 71 (376)
.++.|..|+...
T Consensus 40 ~~pkC~~cg~~L 51 (119)
T 3iz5_i 40 SGPKCPVTGKKI 51 (119)
T ss_dssp SCCCSTTSSCCS
T ss_pred CCCCCCCCCCcc
Confidence 345677776654
No 220
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=20.44 E-value=27 Score=20.09 Aligned_cols=11 Identities=27% Similarity=0.600 Sum_probs=9.4
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|..|++.|.
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 1srk_A 8 FVCRICLSAFT 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCCCcccC
Confidence 47999999997
No 221
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=20.31 E-value=24 Score=29.79 Aligned_cols=29 Identities=28% Similarity=0.630 Sum_probs=21.5
Q ss_pred CcccccccccccccccccccccCccccccccCC
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFF 94 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~ 94 (376)
-.|++|...|.-- .-+ .||.+||..|...
T Consensus 19 ~~C~IC~~~~~~p---v~~-~CgH~fC~~Ci~~ 47 (170)
T 3hcs_A 19 YECPICLMALREA---VQT-PCGHRFCKACIIK 47 (170)
T ss_dssp GBCTTTCSBCSSE---EEC-TTSCEEEHHHHHH
T ss_pred CCCCCCChhhcCc---EEC-CCCCHHHHHHHHH
Confidence 4799999877522 223 6999999999654
No 222
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=20.31 E-value=30 Score=29.47 Aligned_cols=24 Identities=17% Similarity=0.445 Sum_probs=18.2
Q ss_pred Cccccccccccc------ccccccccccCc
Q psy4518 62 PRCPNCSRSFNF------AKRQHHCRLCGC 85 (376)
Q Consensus 62 ~~C~~C~~~F~~------~~RrHHCR~CG~ 85 (376)
..||.|+....+ ...+..|..||.
T Consensus 4 ~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 4 KFCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CBCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred ccCchhCCccccccccCCCCcceECCCCCC
Confidence 489999998763 234678999984
No 223
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.23 E-value=32 Score=25.35 Aligned_cols=29 Identities=21% Similarity=0.605 Sum_probs=19.2
Q ss_pred CcccccccccccccccccccccCccccccccCCcc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFLP 96 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~vvC~~CS~~~~ 96 (376)
-.||.|..+..+..- =|..+|..|....|
T Consensus 9 L~CP~ck~~L~~~~~------~~~LiC~~cg~~YP 37 (70)
T 2js4_A 9 LVCPVCKGRLEFQRA------QAELVCNADRLAFP 37 (70)
T ss_dssp CBCTTTCCBEEEETT------TTEEEETTTTEEEE
T ss_pred eECCCCCCcCEEeCC------CCEEEcCCCCceec
Confidence 479999997765432 26777777765433
No 224
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.19 E-value=28 Score=20.43 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=9.9
Q ss_pred Cccccccccccc
Q psy4518 62 PRCPNCSRSFNF 73 (376)
Q Consensus 62 ~~C~~C~~~F~~ 73 (376)
-.|+.|++.|..
T Consensus 10 ~~C~~C~k~f~~ 21 (37)
T 2elp_A 10 MKCPYCDFYFMK 21 (37)
T ss_dssp EECSSSSCEECS
T ss_pred eECCCCChhhcc
Confidence 479999999974
No 225
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.15 E-value=26 Score=20.80 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=9.6
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|..|++.|.
T Consensus 10 ~~C~~C~k~f~ 20 (37)
T 2elm_A 10 YYCSQCHYSSI 20 (37)
T ss_dssp EECSSSSCEEE
T ss_pred eECCCCCcccC
Confidence 46999999997
No 226
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=20.15 E-value=39 Score=26.55 Aligned_cols=30 Identities=27% Similarity=0.749 Sum_probs=22.8
Q ss_pred CcccccccccccccccccccccCcc-cccccc
Q psy4518 62 PRCPNCSRSFNFAKRQHHCRLCGCI-MCHDCS 92 (376)
Q Consensus 62 ~~C~~C~~~F~~~~RrHHCR~CG~v-vC~~CS 92 (376)
..|..|+. ..+.-.|++|..|... +|..|-
T Consensus 32 v~Cd~C~~-~pI~G~RykC~~C~d~DLC~~C~ 62 (98)
T 2dip_A 32 IPCNNCKQ-FPIEGKCYKCTECIEYHLCQECF 62 (98)
T ss_dssp CCCSSSCC-SSCCSCEEEESSSSSCEEEHHHH
T ss_pred CCCcCCCC-CCcccCeEECCCCCCccHHHHHH
Confidence 37999986 2356789999999665 888883
No 227
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.10 E-value=25 Score=20.62 Aligned_cols=11 Identities=45% Similarity=1.153 Sum_probs=9.6
Q ss_pred Ccccccccccc
Q psy4518 62 PRCPNCSRSFN 72 (376)
Q Consensus 62 ~~C~~C~~~F~ 72 (376)
-.|..|++.|.
T Consensus 10 ~~C~~C~k~f~ 20 (37)
T 2elo_A 10 YSCPVCEKSFS 20 (37)
T ss_dssp CEETTTTEECS
T ss_pred cCCCCCCCccC
Confidence 47999999997
No 228
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=20.10 E-value=34 Score=28.89 Aligned_cols=26 Identities=27% Similarity=0.829 Sum_probs=13.9
Q ss_pred cccccccccccccccccccccCcc----ccccc
Q psy4518 63 RCPNCSRSFNFAKRQHHCRLCGCI----MCHDC 91 (376)
Q Consensus 63 ~C~~C~~~F~~~~RrHHCR~CG~v----vC~~C 91 (376)
.|..|.+.+.+.. .|..||.. ||+.|
T Consensus 60 lCg~C~~~q~~~~---~C~~Cg~~f~~Y~C~~C 89 (143)
T 2dkt_A 60 QCINCEKLQHAQQ---TCEDCSTLFGEYYCSIC 89 (143)
T ss_dssp EESSSCCEECSCS---BCSSSCCBSCSEECSSS
T ss_pred eecccCccccccC---cCCCCCccceeeEecee
Confidence 5666666555432 55555543 45555
Done!