RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4518
(376 letters)
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 58.5 bits (141), Expect = 6e-12
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 55 WLDGKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCS 92
W + +V C C + F+ R+HHCR CG I C +CS
Sbjct: 2 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECS 39
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector
protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 46
Score = 56.3 bits (136), Expect = 2e-11
Identities = 21/44 (47%), Positives = 34/44 (77%)
Query: 320 DPLVQQITNIKQFIKEARMAHRYNEVASLENHLKELQEEYFRRQ 363
PL+QQI NI FI++A+ A R +EV +L+ +L++LQ+EY ++Q
Sbjct: 2 SPLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 45
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 56.5 bits (136), Expect = 2e-11
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 62 PRCPNCSRSFNFAKRQHHCRLCGCIMCHDCS 92
P C +C F R+ C C C CS
Sbjct: 1 PSCKSCGAHFANTARKQTCLDCKKNFCMTCS 31
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein
19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 55.1 bits (132), Expect = 1e-10
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 63 RCPNCSRSFNFAKRQHHCRLCGCIMCHDCS 92
RC C+ F K+++ C+ CG C+ C
Sbjct: 11 RCYGCAVKFTLFKKEYGCKNCGRAFCNGCL 40
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 52.4 bits (125), Expect = 1e-09
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 54 PWLDGKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCS 92
W D C C F F R+HHCR CG + C C+
Sbjct: 9 NW---ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCT 44
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 51.9 bits (124), Expect = 1e-09
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 59 KDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCS 92
D C CS+ F+ R+HHCR CG + C + S
Sbjct: 3 IDSDACMICSKKFSLLNRKHHCRSCGGVFCQEHS 36
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 51.3 bits (122), Expect = 7e-09
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 44 KKKNHEQAIVPWLDGKDVPRCPNCSRSFNFAK-RQHHCRLCGCIMCHDCSFFLPLNKARQ 102
+ + + + + G V RC C C C +C C N+
Sbjct: 31 RLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHP 90
Query: 103 ILV 105
+ +
Sbjct: 91 VWL 93
>d1z0jb1 a.2.19.1 (B:734-784) FYVE finger-containing Rab5 effector
protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 33.1 bits (75), Expect = 0.004
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 319 QDPLVQQITNIKQFIKEARMAHRYNEVASLENHLKELQ 356
++ L+QQI NIK +I +A+ R +EV L +L+EL+
Sbjct: 3 EELLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELK 40
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 31.7 bits (72), Expect = 0.015
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 53 VPWLDGKDVPRCPNCSRSFNFAKRQHHCRLCGCIMCHDCSFFL 95
+P + C C + + C +C + C DC F+
Sbjct: 7 IPLEEYNGERFCYGCQGELK-DQHVYVCAVCQNVFCVDCDVFV 48
>d2ac0a1 b.2.5.2 (A:96-289) p53 tumor suppressor, DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 29.0 bits (65), Expect = 0.68
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 25/79 (31%)
Query: 20 FSHEINKLIIRLDKL------LTNMPIDPI--------KKKNHEQAIVPWLDGKDVPRCP 65
+S +NK+ +L K + + P K+ H + V RCP
Sbjct: 31 YSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEV--------VRRCP 82
Query: 66 N---CSRSFNFAKRQHHCR 81
+ CS S A QH R
Sbjct: 83 HHERCSDSDGLAPPQHLIR 101
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 27.1 bits (59), Expect = 0.87
Identities = 4/36 (11%), Positives = 7/36 (19%), Gaps = 7/36 (19%)
Query: 59 KDVP---RCPNCSRSFNFAKRQHHCRLCGCIMCHDC 91
+D+P R+ G
Sbjct: 2 RDIPDYLCGKISFELM----REPCITPSGITYDRKD 33
>d1s78a4 g.3.9.1 (A:489-564) Protooncoprotein Her2 extracellular
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 27.0 bits (59), Expect = 0.90
Identities = 6/41 (14%), Positives = 8/41 (19%), Gaps = 2/41 (4%)
Query: 54 PWLDGKDVPRCPNCSRSFNFAKRQHHCRLC--GCIMCHDCS 92
+ V C HC C C +
Sbjct: 24 FLRGQECVEECRVLQGLPREYVNARHCLPCHPECQPQNGSV 64
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 26.0 bits (56), Expect = 1.4
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 48 HEQAIVPWLDGKDVPRCPNCSRSFNF 73
H + WL C C +N
Sbjct: 34 HRSCLSTWLTISRNTACQICGVVYNT 59
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 85
Score = 26.7 bits (59), Expect = 1.4
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 9/65 (13%)
Query: 53 VPWLDGKDVPRCPNCSRS-------FNFAKRQHHCRLCGCIMCHDCSFFLPLNKARQILV 105
P + + RC C RS F R+ C C +
Sbjct: 5 PPLNEDGLIVRCRRC-RSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRY 63
Query: 106 E-PEL 109
+ E+
Sbjct: 64 DRNEI 68
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 26.6 bits (58), Expect = 1.9
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 48 HEQAIVPWLDGKDVPRCPNCSRSFNFAK 75
H I WL + V CP +R + F K
Sbjct: 62 HFHCISRWLKTRQV--CPLDNREWEFQK 87
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 25.8 bits (56), Expect = 2.2
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 63 RCPNCSRSFNFAKRQHH--CRLCGCIMCHDC 91
C CS F + + Q C C C C
Sbjct: 20 WCAQCSFGFIYEREQLEATCPQCHQTFCVRC 50
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 25.0 bits (54), Expect = 3.1
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 63 RCPNCSRSFNFAKRQ-HHCRLCGCIMCHDCSFFLPLN 98
C +C +Q C CG + H C +
Sbjct: 13 FCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANL 49
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 24.7 bits (53), Expect = 3.4
Identities = 3/25 (12%), Positives = 7/25 (28%), Gaps = 1/25 (4%)
Query: 48 HEQAIVPWLDGKDVPRCPNCSRSFN 72
++ CP C + +
Sbjct: 27 CRFCWHRIRTDEN-GLCPACRKPYP 50
>d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 88
Score = 25.5 bits (56), Expect = 3.8
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 259 REERRLAEEARQREEAIRELRGREENFNVETHHGR 293
+ER L E A +++ +
Sbjct: 11 PDERMLFERAEALGLPYKKVYVPALPMVLGERPKE 45
>d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 553
Score = 27.1 bits (58), Expect = 4.4
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 12 LRDDRYERFSHEINKLIIRLDKLLTNMPIDPIKKKNHEQAIVPWLDGKDVPRCP 65
L RF + + D+ +P P + + PWL CP
Sbjct: 493 LTPASEPRFYEILKVMQEAADRHTQTLPEVPDQFSWNNFLWKPWL----QLCCP 542
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 24.7 bits (53), Expect = 4.6
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 67 CSRSFNFAKRQHHCRLCGCIMCHDC 91
C+ S +R I
Sbjct: 3 CAISGKVPRRPVLSPKSRTIFEKSL 27
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus
cereus [TaxId: 1396]}
Length = 164
Score = 25.8 bits (56), Expect = 6.9
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 255 LAELREERRLAEEARQREEAIRELRGREENFN 286
+ + EE+ A R E + +
Sbjct: 128 IPDTEEEKESHRIAVLRAEQRHIRKAESKKVA 159
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 26.0 bits (57), Expect = 9.5
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 127 LESREVLKESRN----SRPLICDLYDAL--MGKKQEASKLRAM 163
++SRE++ + + ++ L GK EA+ R+M
Sbjct: 421 IDSRELINPTTYGIGMTYHCYNEMLRMLVAAGKDSEAAYFRSM 463
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.365
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,310,758
Number of extensions: 60956
Number of successful extensions: 353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 47
Length of query: 376
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,213,086
Effective search space: 350581854
Effective search space used: 350581854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)