Query psy4519
Match_columns 236
No_of_seqs 231 out of 1659
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 19:13:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304|consensus 100.0 1.8E-29 3.9E-34 231.2 10.9 136 101-236 31-166 (449)
2 PTZ00206 amino acid transporte 99.8 7.9E-20 1.7E-24 171.3 13.3 105 115-235 58-162 (467)
3 KOG1303|consensus 99.8 1.8E-19 3.9E-24 166.8 8.4 114 113-236 34-147 (437)
4 PLN03074 auxin influx permease 99.7 1.5E-16 3.2E-21 149.4 14.0 121 112-235 41-161 (473)
5 PF01490 Aa_trans: Transmembra 99.7 4.5E-18 9.8E-23 155.3 1.3 110 115-236 1-110 (409)
6 KOG1304|consensus 99.5 6.2E-15 1.3E-19 135.7 6.2 70 1-71 380-449 (449)
7 COG0814 SdaC Amino acid permea 99.4 9.2E-13 2E-17 122.0 10.9 110 112-235 4-113 (415)
8 PLN03074 auxin influx permease 99.4 5.3E-13 1.2E-17 125.4 7.5 88 1-88 369-470 (473)
9 KOG4303|consensus 99.4 1.5E-13 3.2E-18 122.0 3.4 112 114-235 114-227 (524)
10 KOG1305|consensus 99.4 3.5E-13 7.5E-18 124.3 5.0 105 114-235 3-107 (411)
11 PTZ00206 amino acid transporte 99.0 2.7E-10 5.8E-15 107.1 5.3 68 1-72 395-465 (467)
12 PRK09664 tryptophan permease T 98.8 4.5E-08 9.7E-13 90.5 10.7 102 117-233 9-110 (415)
13 PF03222 Trp_Tyr_perm: Tryptop 98.8 7.4E-08 1.6E-12 88.8 12.0 104 116-234 2-105 (394)
14 PRK10483 tryptophan permease; 98.7 1.2E-07 2.5E-12 87.8 11.6 105 114-233 8-112 (414)
15 KOG4303|consensus 98.6 2.9E-09 6.3E-14 95.0 -1.4 72 1-76 448-519 (524)
16 PRK15132 tyrosine transporter 98.6 2.9E-07 6.2E-12 85.1 11.7 100 118-232 4-103 (403)
17 TIGR00837 araaP aromatic amino 98.4 5.2E-07 1.1E-11 82.2 7.6 96 124-234 4-99 (381)
18 PRK13629 threonine/serine tran 98.3 6.6E-06 1.4E-10 76.6 12.4 98 123-234 25-122 (443)
19 PF01490 Aa_trans: Transmembra 98.1 2.9E-07 6.2E-12 84.1 -1.5 68 1-68 340-408 (409)
20 KOG1303|consensus 97.9 2.1E-05 4.5E-10 73.5 6.4 68 1-72 367-435 (437)
21 TIGR00814 stp serine transport 97.9 0.00017 3.6E-09 66.8 11.9 98 123-234 9-106 (397)
22 KOG3832|consensus 97.8 8.2E-05 1.8E-09 62.6 8.1 108 120-228 15-164 (319)
23 TIGR00912 2A0309 spore germina 96.6 0.027 5.8E-07 50.9 11.0 92 116-223 2-93 (359)
24 KOG1305|consensus 96.1 0.0084 1.8E-07 55.8 4.9 67 2-74 342-408 (411)
25 PRK10655 potE putrescine trans 95.2 0.23 5.1E-06 46.0 10.9 57 113-170 4-60 (438)
26 TIGR01773 GABAperm gamma-amino 94.9 0.37 7.9E-06 44.9 11.6 77 112-194 9-86 (452)
27 TIGR00905 2A0302 transporter, 94.9 0.32 6.9E-06 45.7 11.1 57 114-170 6-63 (473)
28 PF03845 Spore_permease: Spore 94.8 0.55 1.2E-05 41.7 11.9 90 116-225 1-93 (320)
29 PRK10644 arginine:agmatin anti 93.7 1.1 2.3E-05 41.8 11.8 38 110-147 3-40 (445)
30 TIGR00835 agcS amino acid carr 93.6 1.1 2.3E-05 42.1 11.5 60 115-175 45-105 (425)
31 TIGR00930 2a30 K-Cl cotranspor 93.4 0.26 5.6E-06 50.7 7.7 59 114-172 75-135 (953)
32 PRK10435 cadB lysine/cadaverin 93.1 2 4.4E-05 39.9 12.5 63 112-179 2-64 (435)
33 TIGR00909 2A0306 amino acid tr 93.0 1.1 2.5E-05 41.2 10.8 56 115-171 3-59 (429)
34 PRK10249 phenylalanine transpo 93.0 1.4 2.9E-05 41.4 11.3 58 114-172 20-78 (458)
35 PRK15049 L-asparagine permease 92.9 2.7 5.8E-05 40.0 13.3 58 113-171 26-84 (499)
36 PRK11387 S-methylmethionine tr 92.8 3.3 7.1E-05 38.9 13.6 59 113-171 12-71 (471)
37 PRK11049 D-alanine/D-serine/gl 92.6 2.7 5.9E-05 39.4 12.9 53 113-166 18-71 (469)
38 PRK10238 aromatic amino acid t 91.6 2.4 5.3E-05 39.7 11.2 55 113-168 10-65 (456)
39 TIGR03810 arg_ornith_anti argi 91.4 4.5 9.8E-05 37.9 12.8 51 115-165 1-52 (468)
40 PRK10836 lysine transporter; P 90.7 6.9 0.00015 36.9 13.4 60 113-172 13-73 (489)
41 PRK10580 proY putative proline 90.7 6.6 0.00014 36.7 13.1 59 113-172 7-66 (457)
42 PRK10746 putative transport pr 88.1 8.7 0.00019 36.1 11.9 57 114-171 9-66 (461)
43 TIGR00913 2A0310 amino acid pe 87.7 7.9 0.00017 36.2 11.4 76 115-194 2-78 (478)
44 PRK11021 putative transporter; 87.6 6.7 0.00015 36.0 10.6 54 118-172 2-56 (410)
45 COG0833 LysP Amino acid transp 87.1 4.2 9.1E-05 39.1 9.0 61 115-175 44-105 (541)
46 TIGR00906 2A0303 cationic amin 86.1 12 0.00026 36.2 11.8 56 114-170 27-84 (557)
47 TIGR00908 2A0305 ethanolamine 84.9 21 0.00045 33.0 12.5 58 113-170 5-62 (442)
48 PF02554 CstA: Carbon starvati 84.1 35 0.00075 31.5 13.7 102 116-234 51-154 (376)
49 TIGR00911 2A0308 L-type amino 84.0 5.8 0.00012 37.5 8.5 59 112-171 39-100 (501)
50 COG1113 AnsP Gamma-aminobutyra 83.8 22 0.00047 33.7 11.8 106 114-228 12-118 (462)
51 PRK15015 carbon starvation pro 80.9 23 0.00049 35.2 11.2 96 121-233 87-184 (701)
52 PRK11357 frlA putative fructos 78.3 21 0.00046 33.0 10.0 59 113-171 6-66 (445)
53 PF13520 AA_permease_2: Amino 77.9 35 0.00076 31.1 11.2 96 118-230 2-98 (426)
54 COG3949 Uncharacterized membra 73.4 25 0.00054 32.0 8.5 90 122-228 8-100 (349)
55 COG0531 PotE Amino acid transp 72.6 47 0.001 30.4 10.7 34 113-146 10-44 (466)
56 PF11700 ATG22: Vacuole efflux 64.7 1.3E+02 0.0028 28.5 14.9 29 7-35 70-98 (477)
57 TIGR00800 ncs1 NCS1 nucleoside 63.9 1.3E+02 0.0027 28.1 12.2 28 204-231 86-113 (442)
58 PRK10197 gamma-aminobutyrate t 63.9 94 0.002 28.9 10.8 43 127-170 4-47 (446)
59 COG1457 CodB Purine-cytosine p 61.8 65 0.0014 30.5 9.2 31 203-233 90-120 (442)
60 PF05767 Pox_A14: Poxvirus vir 58.6 46 0.001 24.3 5.9 47 13-61 13-60 (92)
61 KOG1287|consensus 55.1 22 0.00048 33.9 4.9 59 112-170 9-69 (479)
62 PHA03048 IMV membrane protein; 54.9 48 0.001 24.2 5.5 47 13-61 13-59 (93)
63 PF01235 Na_Ala_symp: Sodium:a 53.0 1.3E+02 0.0028 28.2 9.6 57 113-170 15-75 (416)
64 COG5264 VTC1 Vacuolar transpor 52.9 98 0.0021 24.0 7.2 57 126-188 43-99 (126)
65 COG1966 CstA Carbon starvation 50.9 2.5E+02 0.0054 27.5 11.8 95 116-227 51-147 (575)
66 PHA02680 ORF090 IMV phosphoryl 43.9 96 0.0021 22.6 5.6 47 13-61 13-61 (91)
67 PF03222 Trp_Tyr_perm: Tryptop 43.8 47 0.001 30.6 5.2 31 5-36 336-366 (394)
68 PRK15238 inner membrane transp 41.8 3E+02 0.0066 25.9 12.7 43 113-158 5-47 (496)
69 PRK11026 ftsX cell division AB 39.8 1.5E+02 0.0032 26.5 7.6 66 6-74 233-305 (309)
70 PF11368 DUF3169: Protein of u 39.7 2.4E+02 0.0052 24.1 14.8 29 148-176 132-160 (248)
71 COG0591 PutP Na+/proline sympo 37.9 3.6E+02 0.0079 25.6 13.0 103 117-232 40-144 (493)
72 PF01988 VIT1: VIT family; In 37.1 2.5E+02 0.0053 23.4 11.6 28 117-144 130-157 (213)
73 TIGR01165 cbiN cobalt transpor 35.2 1.8E+02 0.0038 21.4 5.9 36 102-137 48-83 (91)
74 TIGR00813 sss transporter, SSS 33.8 3.7E+02 0.008 24.5 12.0 34 115-148 3-37 (407)
75 PF08006 DUF1700: Protein of u 33.2 81 0.0018 25.5 4.5 13 129-141 84-96 (181)
76 PHA02898 virion envelope prote 33.0 1.5E+02 0.0033 21.6 5.2 47 13-61 13-60 (92)
77 PRK11375 allantoin permease; P 31.9 2.8E+02 0.006 26.3 8.5 11 184-194 89-99 (484)
78 TIGR02119 panF sodium/pantothe 30.3 4.5E+02 0.0099 24.5 12.8 34 115-148 40-74 (471)
79 KOG4580|consensus 30.0 2.5E+02 0.0053 21.3 7.5 53 126-181 28-80 (112)
80 PF11460 DUF3007: Protein of u 29.9 63 0.0014 24.3 2.9 34 144-177 33-67 (104)
81 PF00474 SSF: Sodium:solute sy 28.0 4.6E+02 0.0099 23.7 11.3 72 115-193 6-78 (406)
82 cd02435 CCC1 CCC1. CCC1: This 27.8 3.9E+02 0.0086 22.9 10.7 26 47-72 54-79 (241)
83 PF00324 AA_permease: Amino ac 26.9 1.4E+02 0.003 27.9 5.5 49 127-175 7-56 (478)
84 COG5547 Small integral membran 26.7 2E+02 0.0044 19.2 6.4 29 47-75 30-58 (62)
85 COG1115 AlsT Na+/alanine sympo 26.2 3.6E+02 0.0078 25.7 7.9 58 112-170 58-119 (452)
86 TIGR00439 ftsX putative protei 26.2 3.6E+02 0.0077 24.0 7.7 68 6-74 233-305 (309)
87 cd02432 Nodulin-21_like_1 Nodu 25.3 4.2E+02 0.009 22.4 10.3 28 117-144 134-162 (218)
88 PF12270 Cyt_c_ox_IV: Cytochro 25.0 3.5E+02 0.0075 21.4 8.3 75 148-229 35-111 (137)
89 PF03203 MerC: MerC mercury re 24.9 2.4E+02 0.0053 21.1 5.6 58 7-64 2-59 (116)
90 COG5102 SFT2 Membrane protein 24.6 2.1E+02 0.0046 23.5 5.3 53 9-70 73-126 (201)
91 PF07954 DUF1689: Protein of u 24.4 2E+02 0.0044 23.1 5.2 63 10-76 33-96 (152)
92 TIGR00907 2A0304 amino acid pe 24.4 5.8E+02 0.013 23.7 10.1 56 115-171 12-70 (482)
93 COG3059 Predicted membrane pro 24.2 1.7E+02 0.0036 23.9 4.6 46 102-150 70-118 (182)
94 cd02434 Nodulin-21_like_3 Nodu 24.0 4.5E+02 0.0097 22.3 7.6 26 47-72 36-61 (225)
95 COG5446 Predicted integral mem 23.4 3.1E+02 0.0068 22.9 6.1 25 47-72 4-28 (233)
96 PRK15132 tyrosine transporter 23.3 2.5E+02 0.0054 26.1 6.4 56 5-61 333-389 (403)
97 PRK02898 cobalt transport prot 23.2 90 0.002 23.3 2.7 37 102-138 48-84 (100)
98 PF11990 DUF3487: Protein of u 22.1 3.7E+02 0.008 20.6 7.6 54 114-168 18-72 (121)
99 PF03729 DUF308: Short repeat 21.4 2.4E+02 0.0052 18.3 7.0 42 19-60 29-71 (72)
100 KOG1286|consensus 21.4 53 0.0011 32.0 1.5 57 116-172 31-88 (554)
101 PF11057 Cortexin: Cortexin of 20.8 2E+02 0.0044 20.3 3.9 35 151-191 35-69 (81)
102 COG0814 SdaC Amino acid permea 20.4 1.3E+02 0.0027 28.1 3.8 58 3-64 351-408 (415)
No 1
>KOG1304|consensus
Probab=99.96 E-value=1.8e-29 Score=231.17 Aligned_cols=136 Identities=38% Similarity=0.635 Sum_probs=130.0
Q ss_pred hccCCCCCccccCCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy4519 101 TALSEGPPSVRWLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKR 180 (236)
Q Consensus 101 ~~~~~~~~~~~~~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~ 180 (236)
.|.+++|..++..++++|+.++..|+.|+++|+|+|+||+||+++||+.|.+..++++++|.||+++|++|.+++++|++
T Consensus 31 ~d~~~~~~~~~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~ 110 (449)
T KOG1304|consen 31 NDGDYSPLQLRDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFR 110 (449)
T ss_pred CCCCCCccccccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34567788888888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccCC
Q psy4519 181 IPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236 (236)
Q Consensus 181 ~~~~sY~di~~~~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl~ 236 (236)
.+..+|.|.++.+++.||.|.|.+|+++|.+|+++++++|+|+|++|+||+++|+|
T Consensus 111 ~~~~~y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~ 166 (449)
T KOG1304|consen 111 GPSLDYAETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLK 166 (449)
T ss_pred CccccHHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHH
Confidence 88899999999999999999999999999999999999999999999999999985
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=99.82 E-value=7.9e-20 Score=171.29 Aligned_cols=105 Identities=22% Similarity=0.301 Sum_probs=95.9
Q ss_pred CCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHh
Q psy4519 115 PYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAAL 194 (236)
Q Consensus 115 ~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~ 194 (236)
.+.+..++++|++|+++|+|+|+||+||+++||++|++++++++.++.||+++|++++++. +..+|+|++++++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~------~~~sY~~la~~~~ 131 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT------NIRTYEGVARVLL 131 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCCCHHHHHHHHh
Confidence 4567789999999999999999999999999999999999999999999999999986541 2369999999885
Q ss_pred hcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccC
Q psy4519 195 SEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL 235 (236)
Q Consensus 195 ~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl 235 (236)
||+|++++++++.++++|+|++|+++++|++
T Consensus 132 ----------G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l 162 (467)
T PTZ00206 132 ----------GPWGSYYVAATRAFHGFSACVAYVISVGDIL 162 (467)
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999875
No 3
>KOG1303|consensus
Probab=99.79 E-value=1.8e-19 Score=166.79 Aligned_cols=114 Identities=25% Similarity=0.427 Sum_probs=104.9
Q ss_pred CCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q psy4519 113 LAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 192 (236)
Q Consensus 113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~ 192 (236)
++++.|+++|.+|.+++++|.|+|+||+|++++||+.|++++++.++++.||..+|.+|.+..+.+.++.+.+|+|++++
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~ 113 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA 113 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence 45669999999999999999999999999999999999999999999999999999999998877776667889999998
Q ss_pred HhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccCC
Q psy4519 193 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236 (236)
Q Consensus 193 ~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl~ 236 (236)
+| | +.+++++.+.+.+.++|+|++|++..+||++
T Consensus 114 af--G--------~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~ 147 (437)
T KOG1303|consen 114 AF--G--------PKGRLLVSVLQYLELFGICVVYIILAGDNLK 147 (437)
T ss_pred Hh--C--------CCceEeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 4 4559999999999999999999999999974
No 4
>PLN03074 auxin influx permease; Provisional
Probab=99.71 E-value=1.5e-16 Score=149.36 Aligned_cols=121 Identities=19% Similarity=0.182 Sum_probs=101.2
Q ss_pred cCCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHH
Q psy4519 112 WLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 191 (236)
Q Consensus 112 ~~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~ 191 (236)
...++++.+++.+|++|+.+|+|+|+||+||+++||++|++.++++++++.||+++|++++++.++|.+.+..+|++...
T Consensus 41 ~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~ 120 (473)
T PLN03074 41 LLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVI 120 (473)
T ss_pred cccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999988877665544455555433
Q ss_pred HHhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccC
Q psy4519 192 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL 235 (236)
Q Consensus 192 ~~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl 235 (236)
..+ +...+.+||.++.+..++.++++++.|+.|++..++|+
T Consensus 121 ~~~---e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~ 161 (473)
T PLN03074 121 QWF---EVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNI 161 (473)
T ss_pred HHH---HHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 322 22234567788999999999999999999999988775
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.69 E-value=4.5e-18 Score=155.26 Aligned_cols=110 Identities=26% Similarity=0.494 Sum_probs=99.3
Q ss_pred CCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHh
Q psy4519 115 PYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAAL 194 (236)
Q Consensus 115 ~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~ 194 (236)
|+.|++++++|++|+++|+|+|++|++|+++||++|++++++++.++.||+++|++++++.. ++.+..+|+|+++.++
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999987654 2234578999987664
Q ss_pred hcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccCC
Q psy4519 195 SEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236 (236)
Q Consensus 195 ~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl~ 236 (236)
|+++++++++++.+.++|.|++|+++++|++.
T Consensus 79 ----------G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~ 110 (409)
T PF01490_consen 79 ----------GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLS 110 (409)
T ss_pred ----------cccccccccchheeccccccceeEEEeeeeee
Confidence 67779999999999999999999999999874
No 6
>KOG1304|consensus
Probab=99.54 E-value=6.2e-15 Score=135.73 Aligned_cols=70 Identities=36% Similarity=0.659 Sum_probs=65.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHhchhHHhHHHH
Q psy4519 1 MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREI 71 (236)
Q Consensus 1 ~iP~~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gty~si~~i 71 (236)
+||+|++|||||||+|++.|++++||++|+..+|+++++..+|+ +++|++++++|+++++.|||+|+.+|
T Consensus 380 ~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~-~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 380 AVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWK-LIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehH-HHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 58999999999999999999999999999999999877777886 68999999999999999999999875
No 7
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.42 E-value=9.2e-13 Score=121.97 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=97.8
Q ss_pred cCCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHH
Q psy4519 112 WLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 191 (236)
Q Consensus 112 ~~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~ 191 (236)
..+++.+..++++++.++++|+|+|+||++++..|++++++++++.+.+++++.+++.|+.++..+ +..+|.++++
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~----~~~~~~~~~~ 79 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN----GKASITSLVE 79 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CcccHHHHHH
Confidence 345678899999999999999999999999999999999999999999999999999999766522 2248999888
Q ss_pred HHhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccC
Q psy4519 192 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL 235 (236)
Q Consensus 192 ~~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl 235 (236)
+.+ ||.+++++++++.+.++|.+.+|.+.+++++
T Consensus 80 ~~~----------G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l 113 (415)
T COG0814 80 DYL----------GKKGGILIGLSYFFALYGLLVAYIVGIGNLL 113 (415)
T ss_pred HHh----------CcchHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 764 6677999999999999999999999999875
No 8
>PLN03074 auxin influx permease; Provisional
Probab=99.39 E-value=5.3e-13 Score=125.41 Aligned_cols=88 Identities=19% Similarity=0.297 Sum_probs=67.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC----------CchHH-HHHHHHHHHHH-HHHHHhchhHHhH
Q psy4519 1 MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHG----------LSKAL-FITKHVVIFLI-AVVGCYTGVQASV 68 (236)
Q Consensus 1 ~iP~~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~~~~----------~~~~~-~~~~~~~ii~~-G~~~~v~Gty~si 68 (236)
+||+|++++||+||++++.+++++|+++|++++|++..+ ..+|+ ..++|++++++ |+++++.|||+|+
T Consensus 369 ~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi 448 (473)
T PLN03074 369 IFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASM 448 (473)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHH
Confidence 489999999999999999999999999999988764110 11232 36899999984 7777899999999
Q ss_pred HHHHHHHhh-h-hhhhhhhhhc
Q psy4519 69 REILIEVFK-V-VAQYVLCKKK 88 (236)
Q Consensus 69 ~~ii~~~~~-~-~~~~~~~~~~ 88 (236)
++|++++.. + -..--+|+.+
T Consensus 449 ~~ii~~~~~~~~f~~~~~c~~~ 470 (473)
T PLN03074 449 TNFVRQIDTFGLFAKCYQCPPP 470 (473)
T ss_pred HHHHHhhhhhhhhhhhccCCCC
Confidence 999976433 1 2333567644
No 9
>KOG4303|consensus
Probab=99.39 E-value=1.5e-13 Score=121.97 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=96.6
Q ss_pred CCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCCCHHHHHH
Q psy4519 114 APYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKR--IPSLTYPEILG 191 (236)
Q Consensus 114 ~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~--~~~~sY~di~~ 191 (236)
+.+.+.+||++|++|++.|--+++||+|...+||| ++..++.++.+|.||..+|++|..+-.+... +-+.||.+|+.
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~ 192 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD 192 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence 34689999999999999999999999999999999 7999999999999999999999876543211 12479999999
Q ss_pred HHhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccC
Q psy4519 192 AALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL 235 (236)
Q Consensus 192 ~~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl 235 (236)
.++ +| +.|...|++.+.+..+.+|+.|++..+|-+
T Consensus 193 ~C~--~P-------~lGgr~V~~AQliELlmTCIlYvVv~gdLl 227 (524)
T KOG4303|consen 193 FCY--KP-------GLGGRWVLAAQLIELLMTCILYVVVAGDLL 227 (524)
T ss_pred Hhc--CC-------CcchheeeHHHHHHHHHHHHhhhheechhh
Confidence 875 65 577788999999999999999999988754
No 10
>KOG1305|consensus
Probab=99.38 E-value=3.5e-13 Score=124.30 Aligned_cols=105 Identities=25% Similarity=0.379 Sum_probs=91.9
Q ss_pred CCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy4519 114 APYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAA 193 (236)
Q Consensus 114 ~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~ 193 (236)
++++|...+.+|++|+++|+|++++|+||++.|++.|++++.++++++.++.+++.+|+++.++ .+|+++++++
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~------~ty~~l~~~~ 76 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE------RTYSSLGDLI 76 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC------CCHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999876643 3999999988
Q ss_pred hhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcccC
Q psy4519 194 LSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNL 235 (236)
Q Consensus 194 ~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~nl 235 (236)
+ |+.|+....+++.....| |++|+++++|.+
T Consensus 77 ~----------g~~g~~~~~v~~~~~~~g-~i~yliiigd~~ 107 (411)
T KOG1305|consen 77 F----------GKLGKVDAAVAVKCFGVG-MVSYLIIIGDLL 107 (411)
T ss_pred c----------CCCceeeehhhHHhhhcc-ceEEEEEEcccc
Confidence 5 566677777777777777 799999999865
No 11
>PTZ00206 amino acid transporter; Provisional
Probab=99.02 E-value=2.7e-10 Score=107.07 Aligned_cols=68 Identities=19% Similarity=0.408 Sum_probs=58.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCCCCchHHHHHHHHHHHHHHHHHHhchhHHhHHHHH
Q psy4519 1 MIPNLELFIALIGSLCLPFMAISLPALTDLIT---FWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREIL 72 (236)
Q Consensus 1 ~iP~~~~~isLvGa~~~s~l~~i~P~~~~~~~---~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gty~si~~ii 72 (236)
.||+++.+++|+||++++.++|++|++++++. .|++ . .++ ++++|++++++|+++.+.|||+|+.+.+
T Consensus 395 ~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~-~--~~~-~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 395 FIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQK-V--GPF-YYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred ccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHh-h--chH-HHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 48999999999999999999999999999984 3432 1 223 3579999999999999999999999876
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.78 E-value=4.5e-08 Score=90.54 Aligned_cols=102 Identities=9% Similarity=0.034 Sum_probs=89.0
Q ss_pred CcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhc
Q psy4519 117 GRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSE 196 (236)
Q Consensus 117 ~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~~ 196 (236)
.+...+..-+..+.+|+|+|++|.+.+..|+.+++++++++++..+||..++.|...+. + +..++..++|..+
T Consensus 9 ~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~----~-~g~~l~tma~~~L-- 81 (415)
T PRK09664 9 HSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNY----P-VGSSFNTITKDLI-- 81 (415)
T ss_pred cchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-CCCCHHHHHHHHc--
Confidence 37777899999999999999999999999999999999999999999999999986443 1 2467888888764
Q ss_pred CchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcc
Q psy4519 197 GPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIAS 233 (236)
Q Consensus 197 G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~ 233 (236)
||.|+.+.+++..+-.++.+++|+.-.++
T Consensus 82 --------G~~g~~i~~~~~~fl~Y~Ll~AYisggG~ 110 (415)
T PRK09664 82 --------GNTWNIISGITVAFVLYILTYAYISANGA 110 (415)
T ss_pred --------ChHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 67889999999999999999999865444
No 13
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.77 E-value=7.4e-08 Score=88.82 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=91.2
Q ss_pred CCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhh
Q psy4519 116 YGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALS 195 (236)
Q Consensus 116 ~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~ 195 (236)
+.+.+++.+-++.+.+|+|+|+||.+....|++++++.+++.+.+++|+..++.|...+.. +..+|.+++++.+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~-----~~~~~~~~a~~~l- 75 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP-----EGSSLTSMAEKYL- 75 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHh-
Confidence 4577889999999999999999999999999999999999999999999999999865431 2468999998764
Q ss_pred cCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhccc
Q psy4519 196 EGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASN 234 (236)
Q Consensus 196 ~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~n 234 (236)
||.|+.++.++..+..++.+.+|..=.++.
T Consensus 76 ---------G~~g~~~~~~~~~~~~y~ll~AYisg~g~~ 105 (394)
T PF03222_consen 76 ---------GKKGGIVIGISYLFLLYALLVAYISGGGSI 105 (394)
T ss_pred ---------ChHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 788899999999999999999998766653
No 14
>PRK10483 tryptophan permease; Provisional
Probab=98.72 E-value=1.2e-07 Score=87.81 Aligned_cols=105 Identities=9% Similarity=0.050 Sum_probs=91.2
Q ss_pred CCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy4519 114 APYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAA 193 (236)
Q Consensus 114 ~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~ 193 (236)
+++.+.+++.+-+..+.||+|+|++|.+.+..|+.+++++++++++..+||..+++|...+. + +..++..++|..
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~----~-~g~~~~tma~~~ 82 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNY----R-IGSSFDTITKDL 82 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-CCCCHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999985443 1 236888988876
Q ss_pred hhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcc
Q psy4519 194 LSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIAS 233 (236)
Q Consensus 194 ~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~ 233 (236)
+ ||.|+.+..++..+-.++.+++|..=.++
T Consensus 83 L----------G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~ 112 (414)
T PRK10483 83 L----------GKGWNVVNGISIAFVLYILTYAYISASGS 112 (414)
T ss_pred c----------ChHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 4 67789999999999999999999765444
No 15
>KOG4303|consensus
Probab=98.65 E-value=2.9e-09 Score=94.96 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=63.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHhchhHHhHHHHHHHHh
Q psy4519 1 MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREILIEVF 76 (236)
Q Consensus 1 ~iP~~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gty~si~~ii~~~~ 76 (236)
.||+|..+|+|+||+.++.|+|+.|+++|++..|++ ..|....+|..||++|...+|.|.|.|..++|+.+.
T Consensus 448 ~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~----L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~ 519 (524)
T KOG4303|consen 448 SVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT----LNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAIN 519 (524)
T ss_pred HhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh----hhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHh
Confidence 389999999999999999999999999999988864 124345689999999999999999999999996643
No 16
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.64 E-value=2.9e-07 Score=85.12 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=86.8
Q ss_pred cHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhcC
Q psy4519 118 RYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEG 197 (236)
Q Consensus 118 s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~~G 197 (236)
+.+.+.+.+..+.+|+|+|++|.+....|++++++++++++.+.+|+.+++.|+..+ . .+..++.+++|+.+
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~----~-~~~~~~~~~a~~~L--- 75 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQH----V-PADTGLGTLAKRYL--- 75 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcC----C-CCCCCHHHHHHHHh---
Confidence 667889999999999999999999999999999999999999999999999986322 1 23467999988764
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhc
Q psy4519 198 PARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIA 232 (236)
Q Consensus 198 ~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~ 232 (236)
||.|+++..++..+..+..+.+|..-.+
T Consensus 76 -------G~~g~~i~~~~y~fl~y~ll~AYisg~g 103 (403)
T PRK15132 76 -------GRYGQWLTGFSMMFLMYALTAAYISGAG 103 (403)
T ss_pred -------ChHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 7788999999999999999999987633
No 17
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.44 E-value=5.2e-07 Score=82.19 Aligned_cols=96 Identities=11% Similarity=0.089 Sum_probs=81.2
Q ss_pred HHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhcCchhhhh
Q psy4519 124 SHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRW 203 (236)
Q Consensus 124 ~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~~G~~~~r~ 203 (236)
..++++++|+|++++|.++...|...+.+.+++.+.++.++..++.+...+.. +..+|.+.+++.+
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p-----~~~~~~~~~~~~~--------- 69 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP-----GGASFNTIAKDLL--------- 69 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHh---------
Confidence 45678999999999999999999999999999999999999999998865431 1357888887764
Q ss_pred hhhhHHHHHHHHHHHHhHhHHHHHHHhhccc
Q psy4519 204 LAPYGRGLSFTAMIVDEIGALCVYLLFIASN 234 (236)
Q Consensus 204 ~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~n 234 (236)
||++++++.+...+..+..+++|.+..++.
T Consensus 70 -G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~ 99 (381)
T TIGR00837 70 -GKTGNIIAGLSLLFVLYILTYAYISGGGSI 99 (381)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 788899999999999999999998876544
No 18
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.35 E-value=6.6e-06 Score=76.64 Aligned_cols=98 Identities=18% Similarity=0.141 Sum_probs=84.4
Q ss_pred HHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhcCchhhh
Q psy4519 123 LSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFR 202 (236)
Q Consensus 123 ~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~~G~~~~r 202 (236)
...+..+.+|+|+|+||-.....|++++++++++...+++|+...|.|..... +.+..+|.++++..+
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~----~~~~~~i~~v~~~~l-------- 92 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSG----SNPSGNITETVEEHF-------- 92 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCCCCCHHHHHHHHc--------
Confidence 47999999999999999999999999999999999999999999998874322 123468999998775
Q ss_pred hhhhhHHHHHHHHHHHHhHhHHHHHHHhhccc
Q psy4519 203 WLAPYGRGLSFTAMIVDEIGALCVYLLFIASN 234 (236)
Q Consensus 203 ~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~n 234 (236)
||.++.+..+.-.+..+..+.+|.+.+.+.
T Consensus 93 --G~~g~~i~~ilYff~ly~ll~aY~~~itn~ 122 (443)
T PRK13629 93 --GKTGGVVITFLYFFAICPLLWIYGVTITNT 122 (443)
T ss_pred --ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999998776654
No 19
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.13 E-value=2.9e-07 Score=84.06 Aligned_cols=68 Identities=26% Similarity=0.357 Sum_probs=56.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHH-HHHHHHHHHHHHHHHhchhHHhH
Q psy4519 1 MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALF-ITKHVVIFLIAVVGCYTGVQASV 68 (236)
Q Consensus 1 ~iP~~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~~G~~~~v~Gty~si 68 (236)
.+|+++.+++++||++++.+++++|++++++.+++++....+++. .+.+.+++++|++..+.|||.++
T Consensus 340 ~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 340 FVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 479999999999999999999999999999988775433223221 24578889999999999999876
No 20
>KOG1303|consensus
Probab=97.91 E-value=2.1e-05 Score=73.46 Aligned_cols=68 Identities=19% Similarity=0.285 Sum_probs=52.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH-HHHHHHHHhchhHHhHHHHH
Q psy4519 1 MIPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVI-FLIAVVGCYTGVQASVREIL 72 (236)
Q Consensus 1 ~iP~~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~i-i~~G~~~~v~Gty~si~~ii 72 (236)
.+|+|+++++|+||+....+++++|+++|+.....++.. .+|+ .+..+ +++|+++.+.....++..++
T Consensus 367 ~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s-~~~~---~~~~~~~~~~~~~~v~~~~~~~~~li 435 (437)
T KOG1303|consen 367 SFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFS-PKWL---LNWVIILVVGLLLSVLAAVGGVRSLI 435 (437)
T ss_pred hccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-HHHH---HHHHhhhhhhhhHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999885443322 2332 34444 67777777777777777776
No 21
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.89 E-value=0.00017 Score=66.76 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=80.0
Q ss_pred HHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhcCchhhh
Q psy4519 123 LSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFR 202 (236)
Q Consensus 123 ~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~~G~~~~r 202 (236)
.+.+..+.+|+|+|++|....+.||+..+++.++...+.+++..++.|.. +.+ +.|..++.|+.|..+
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~--l~~--~~p~~~i~~~~~~~f-------- 76 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFL--LSS--KNPCEDITEVVEEHF-------- 76 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcC--CCCCCCHHHHHHHHc--------
Confidence 67889999999999999999999999888888888888888888887763 322 234568999988775
Q ss_pred hhhhhHHHHHHHHHHHHhHhHHHHHHHhhccc
Q psy4519 203 WLAPYGRGLSFTAMIVDEIGALCVYLLFIASN 234 (236)
Q Consensus 203 ~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~n 234 (236)
||+++.++.+.-.+..+..+.+|..-+++.
T Consensus 77 --Gk~~G~ii~~lY~~~~~~i~~aY~~~~~~~ 106 (397)
T TIGR00814 77 --GKNWGILITLLYFFAIYPILLIYSVAITND 106 (397)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999998888899988888665543
No 22
>KOG3832|consensus
Probab=97.84 E-value=8.2e-05 Score=62.60 Aligned_cols=108 Identities=23% Similarity=0.324 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhcC-CCC------
Q psy4519 120 WDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYE---------LCRRKR-IPS------ 183 (236)
Q Consensus 120 ~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~---------~~~r~~-~~~------ 183 (236)
.....-++|-++|+|-|+||.||..+||++++.++.+.+++++.+....++.... +++++. .+.
T Consensus 15 ~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stas 94 (319)
T KOG3832|consen 15 TVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTAS 94 (319)
T ss_pred hhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccC
Confidence 3456678889999999999999999999999999999999999998888776432 221110 000
Q ss_pred -------CCHH-------------------HHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHH
Q psy4519 184 -------LTYP-------------------EILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYL 228 (236)
Q Consensus 184 -------~sY~-------------------di~~~~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~ 228 (236)
..|+ ||..+. +.|.+....|.|.|-.+.-++++++.+|-...|-
T Consensus 95 d~dvli~d~yeraekrpilsvqrrgspnpfeisdkv-emgemasmffnkvgln~fyf~iiiylfgdlaiya 164 (319)
T KOG3832|consen 95 DDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKV-EMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYA 164 (319)
T ss_pred CCcEEEecCchhcccCCcceecccCCCCcceeehhh-hHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhh
Confidence 1121 121111 2355556667788888888888888888877774
No 23
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=96.58 E-value=0.027 Score=50.85 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=55.8
Q ss_pred CCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhh
Q psy4519 116 YGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALS 195 (236)
Q Consensus 116 ~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~ 195 (236)
+.|.+|..+.++.+++|+|++.+|....+.+---+.+..++.+++......++.+...+ .|..+..|..++++
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~------~p~~~~~~~~~~~~- 74 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSK------FPEKNFSEILSKYL- 74 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHH------CCCCCHHHHHHHHh-
Confidence 46889999999999999999999997654222223334455555555555555444322 23346777777665
Q ss_pred cCchhhhhhhhhHHHHHHHHHHHHhHhH
Q psy4519 196 EGPARFRWLAPYGRGLSFTAMIVDEIGA 223 (236)
Q Consensus 196 ~G~~~~r~~g~~g~~~v~~~i~~~~~G~ 223 (236)
||+...++.....+..+..
T Consensus 75 ---------Gk~~g~~~~~~~~~~~~~~ 93 (359)
T TIGR00912 75 ---------GKILGRLLSILFILYFFLI 93 (359)
T ss_pred ---------hHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444333
No 24
>KOG1305|consensus
Probab=96.09 E-value=0.0084 Score=55.78 Aligned_cols=67 Identities=16% Similarity=0.312 Sum_probs=51.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHhchhHHhHHHHHHH
Q psy4519 2 IPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREILIE 74 (236)
Q Consensus 2 iP~~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gty~si~~ii~~ 74 (236)
+|+.+.+.+++||.+++.++|++|+++++...+. +.+.+ ....+...+|++..+.|+...+.++..+
T Consensus 342 ~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~----~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 342 VPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREP----LGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred hccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999887664 11111 2355566667888888888777777633
No 25
>PRK10655 potE putrescine transporter; Provisional
Probab=95.16 E-value=0.23 Score=46.02 Aligned_cols=57 Identities=11% Similarity=0.134 Sum_probs=41.6
Q ss_pred CCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 113 LAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVR 170 (236)
Q Consensus 113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~ 170 (236)
++++.+.+++....+.+++|+|++.+|..+.+.|-. +++..++.+++.........|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~-~~~~w~i~~~~~~~~a~~~ae 60 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTI-SILSWLVTAVGSMALAYAFAK 60 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999988888863 455555555554444444433
No 26
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=94.94 E-value=0.37 Score=44.95 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=50.2
Q ss_pred cCCCCCcHHHHHHHHHHhhhhhhhhHHH-HHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHH
Q psy4519 112 WLAPYGRYWDALSHMIKGALGTGILTMP-HAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEIL 190 (236)
Q Consensus 112 ~~~~~~s~~~a~~~l~k~~iG~GiL~lP-~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~ 190 (236)
+.+++.+..+..+..+.+++|+|++..| .+++++|.. +++..++.+++....+. |..++.++... ..+..+-+
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~----~~aEl~s~~P~-~Gg~~~~~ 82 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMR----MLGEMAVANPD-TGSFSTYA 82 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHH----HHHHHHHhcCC-CCCHHHHH
Confidence 3456789999999999999999999999 678899964 55555555555544333 44455443222 22444444
Q ss_pred HHHh
Q psy4519 191 GAAL 194 (236)
Q Consensus 191 ~~~~ 194 (236)
++.+
T Consensus 83 ~~~~ 86 (452)
T TIGR01773 83 DDAI 86 (452)
T ss_pred HHHh
Confidence 4443
No 27
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=94.89 E-value=0.32 Score=45.73 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=38.7
Q ss_pred CCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 114 APYGRYWDALSHMIKGALGTGILTMPHAFKDSG-YLLGFLGTVAIGAFTTSCIQILVR 170 (236)
Q Consensus 114 ~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G-~~~G~i~l~~~~~ls~yt~~lLv~ 170 (236)
+++.+.+++....+.+++|+|++.+|......| ....++..++.+++.........|
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aE 63 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAI 63 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999999999999876543 322234444555544444433333
No 28
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=94.79 E-value=0.55 Score=41.73 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=57.1
Q ss_pred CCcHHHHHHHHHHhhhhhhhhHHHHHHHhc---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q psy4519 116 YGRYWDALSHMIKGALGTGILTMPHAFKDS---GYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 192 (236)
Q Consensus 116 ~~s~~~a~~~l~k~~iG~GiL~lP~af~~~---G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~ 192 (236)
+.|..|...-+..+.+|+|++.+|....+. ||+ +.++-.+.+.+..+....+.+ | .|..+..|..++
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi-~~ll~~~~~l~~~~l~~~l~~-------~--~p~~~l~~~~~~ 70 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWI-SVLLGGLIGLLLALLIYYLLK-------R--FPGKTLVEISEK 70 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHH-------H--CCCCCHHHHHHH
Confidence 357889999999999999999999976555 576 344444444444444444322 2 244678888877
Q ss_pred HhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHH
Q psy4519 193 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALC 225 (236)
Q Consensus 193 ~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~ 225 (236)
.+ ||+...++.+...+..+....
T Consensus 71 ~~----------Gk~lg~ii~~~~~l~~l~~~~ 93 (320)
T PF03845_consen 71 LF----------GKWLGKIINLLYILYFLLISA 93 (320)
T ss_pred Hh----------CcHHHHHHHHHHHHHHHHHHH
Confidence 65 555555555544444444433
No 29
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=93.70 E-value=1.1 Score=41.80 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=32.4
Q ss_pred cccCCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcCh
Q psy4519 110 VRWLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGY 147 (236)
Q Consensus 110 ~~~~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~ 147 (236)
+.+.+++.+.+++....+.+++|+|++.+|......|.
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~ 40 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG 40 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH
Confidence 34566779999999999999999999999988887763
No 30
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=93.64 E-value=1.1 Score=42.11 Aligned_cols=60 Identities=12% Similarity=0.021 Sum_probs=40.7
Q ss_pred CCCcHHHHHHHHHHhhhhhh-hhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 115 PYGRYWDALSHMIKGALGTG-ILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYEL 175 (236)
Q Consensus 115 ~~~s~~~a~~~l~k~~iG~G-iL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~ 175 (236)
++.|.+|++...+.+.+|+| ++++|.|...+| ..+++-+-+.+++..-+.+.-+-..++.
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~y 105 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKY 105 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 45899999999999999998 999999988888 3344444444444443333333333344
No 31
>TIGR00930 2a30 K-Cl cotransporter.
Probab=93.44 E-value=0.26 Score=50.66 Aligned_cols=59 Identities=12% Similarity=-0.023 Sum_probs=45.5
Q ss_pred CCCCcHHHHHHHH-HHhhhhhhhh-HHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 114 APYGRYWDALSHM-IKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQ 172 (236)
Q Consensus 114 ~~~~s~~~a~~~l-~k~~iG~GiL-~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~ 172 (236)
.++.+++...+.. +..++|+|++ .+++...++|...+++..++.++++..+..-+.+-.
T Consensus 75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seia 135 (953)
T TIGR00930 75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIA 135 (953)
T ss_pred CcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777766665 8899999998 577888899988778888888888888876665543
No 32
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=93.06 E-value=2 Score=39.86 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=44.0
Q ss_pred cCCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4519 112 WLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRK 179 (236)
Q Consensus 112 ~~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~ 179 (236)
+++++.+.++.....+.+++|+|++.+|....+.|-. .++..++.++. +..+..|..++..+.
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~----~l~~al~~aEL~s~~ 64 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIG----AMSLAYVYARLATKN 64 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHH----HHHHHHHHHHHHhhC
Confidence 3456789999999999999999999999999887753 33333333333 334445555665543
No 33
>TIGR00909 2A0306 amino acid transporter.
Probab=93.05 E-value=1.1 Score=41.17 Aligned_cols=56 Identities=18% Similarity=0.104 Sum_probs=38.0
Q ss_pred CCCcHHHHHHHHHHhhhhhhhhHHHHHH-HhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 115 PYGRYWDALSHMIKGALGTGILTMPHAF-KDSGYLLGFLGTVAIGAFTTSCIQILVRA 171 (236)
Q Consensus 115 ~~~s~~~a~~~l~k~~iG~GiL~lP~af-~~~G~~~G~i~l~~~~~ls~yt~~lLv~~ 171 (236)
++.+.+++..-.+.+++|+|++.+|... ..+|.. ..+..++.+++.........+.
T Consensus 3 r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~a~~~~el 59 (429)
T TIGR00909 3 RELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALFIALVYAEL 59 (429)
T ss_pred ccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999998643 345543 3444555555555544444444
No 34
>PRK10249 phenylalanine transporter; Provisional
Probab=93.00 E-value=1.4 Score=41.40 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=41.6
Q ss_pred CCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 114 APYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQ 172 (236)
Q Consensus 114 ~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~ 172 (236)
+++.+.++..+-.+.+++|+|++..|- +.+++|.. .++..++.+++....+..+.+..
T Consensus 20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~-~~l~~li~~~~~~~~~~~~aEl~ 78 (458)
T PRK10249 20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA-VLLGYGVAGIIAFLIMRQLGEMV 78 (458)
T ss_pred hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999997665 66777863 56666666666655555554443
No 35
>PRK15049 L-asparagine permease; Provisional
Probab=92.91 E-value=2.7 Score=39.96 Aligned_cols=58 Identities=19% Similarity=0.116 Sum_probs=42.2
Q ss_pred CCCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 113 LAPYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRA 171 (236)
Q Consensus 113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~ 171 (236)
.+++.+.++..+-.+.+++|+|++..|- ++.++|-. +++..++.+++....+..+.|.
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~-~il~~li~~i~~~~v~~slaEL 84 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPA-LALVYLICGLFSFFILRALGEL 84 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888999999999999999997776 88888863 4555666666555555555443
No 36
>PRK11387 S-methylmethionine transporter; Provisional
Probab=92.77 E-value=3.3 Score=38.90 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=41.3
Q ss_pred CCCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 113 LAPYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRA 171 (236)
Q Consensus 113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~ 171 (236)
.+++.+.++...-.+.+++|+|++..|- +.+.+|-...++..++.+++.......+.|-
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aEL 71 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGEL 71 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566899999999999999999997766 4577885433555555555555555555443
No 37
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=92.64 E-value=2.7 Score=39.44 Aligned_cols=53 Identities=19% Similarity=0.118 Sum_probs=39.2
Q ss_pred CCCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHH
Q psy4519 113 LAPYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQ 166 (236)
Q Consensus 113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~ 166 (236)
.+++.+.++...-.+.+++|+|++-.|- +++++|. ..++..++.+++....+.
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~ 71 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMR 71 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999998655 8889887 345555555555544443
No 38
>PRK10238 aromatic amino acid transporter; Provisional
Probab=91.65 E-value=2.4 Score=39.65 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=37.9
Q ss_pred CCCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHH
Q psy4519 113 LAPYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQIL 168 (236)
Q Consensus 113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lL 168 (236)
.+++.+.++..+--+.+++|+|++-.|- +.+++|- ..++..++.+++....+..+
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~ 65 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQL 65 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999987766 6677775 33444455555444444333
No 39
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=91.41 E-value=4.5 Score=37.93 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=34.9
Q ss_pred CCCcHHHHHHHHHHhhhhhhhhHHHHHH-HhcChhHHHHHHHHHHHHHHHHH
Q psy4519 115 PYGRYWDALSHMIKGALGTGILTMPHAF-KDSGYLLGFLGTVAIGAFTTSCI 165 (236)
Q Consensus 115 ~~~s~~~a~~~l~k~~iG~GiL~lP~af-~~~G~~~G~i~l~~~~~ls~yt~ 165 (236)
|+.+.+++....+.+++|+|++.+|... +.+|....++..++.++......
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~a 52 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALA 52 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999998864 45554333444455555444433
No 40
>PRK10836 lysine transporter; Provisional
Probab=90.74 E-value=6.9 Score=36.94 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=45.7
Q ss_pred CCCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 113 LAPYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQ 172 (236)
Q Consensus 113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~ 172 (236)
.+++.+.++.....+.+++|+|++..|- +.+++|....++..++.++++...+..+.|-.
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~ 73 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELA 73 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456899999999999999999999886 78888875456666666776666665555543
No 41
>PRK10580 proY putative proline-specific permease; Provisional
Probab=90.66 E-value=6.6 Score=36.66 Aligned_cols=59 Identities=19% Similarity=0.084 Sum_probs=42.6
Q ss_pred CCCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 113 LAPYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQ 172 (236)
Q Consensus 113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~ 172 (236)
.+++.+.++.....+.+++|+|++.+|. +.+.+|.. ..+..++.+++....+..+.+..
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~ 66 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMS 66 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999998876 56777863 46666666666666655554443
No 42
>PRK10746 putative transport protein YifK; Provisional
Probab=88.15 E-value=8.7 Score=36.06 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=40.8
Q ss_pred CCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 114 APYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRA 171 (236)
Q Consensus 114 ~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~ 171 (236)
+++.+..+..+-.+.++||+|++..|. +.+.+|.. .++..++.+++....+..+.+.
T Consensus 9 ~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~-~~l~~~i~g~~~~~v~~~~aEl 66 (461)
T PRK10746 9 QRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS-VLLAYIIAGLFVFFIMRSMGEM 66 (461)
T ss_pred hccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999997554 77888873 4555666666655555555443
No 43
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=87.74 E-value=7.9 Score=36.25 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=47.5
Q ss_pred CCCcHHHHHHHHHHhhhhhhhhHHH-HHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy4519 115 PYGRYWDALSHMIKGALGTGILTMP-HAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAA 193 (236)
Q Consensus 115 ~~~s~~~a~~~l~k~~iG~GiL~lP-~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~ 193 (236)
++.+.++.....+.+++|+|++..| .+.+++|...-++..++.+++....+..+.| +.++..+....|..-+++.
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aE----l~s~~P~~gG~~~~~~~~~ 77 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGE----MATFYPVVSGSFATYASRF 77 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCCCCCCHHHHHHHH
Confidence 4578888889999999999999755 5778888543344455555555555544443 4333221223566666665
Q ss_pred h
Q psy4519 194 L 194 (236)
Q Consensus 194 ~ 194 (236)
+
T Consensus 78 ~ 78 (478)
T TIGR00913 78 V 78 (478)
T ss_pred c
Confidence 4
No 44
>PRK11021 putative transporter; Provisional
Probab=87.57 E-value=6.7 Score=35.97 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 118 RYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQ 172 (236)
Q Consensus 118 s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~ 172 (236)
+.+++....+.+++|+|++.+|- +.+.+|- ..++..++.+++.........|..
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~ 56 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLG 56 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999998887 5566664 345555555555555555444443
No 45
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=87.14 E-value=4.2 Score=39.12 Aligned_cols=61 Identities=20% Similarity=0.145 Sum_probs=50.8
Q ss_pred CCCcHHHHHHHHHHhhhhhhhh-HHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 115 PYGRYWDALSHMIKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYEL 175 (236)
Q Consensus 115 ~~~s~~~a~~~l~k~~iG~GiL-~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~ 175 (236)
++...-.-.+--+...||||++ +.-.+.+++|-..-++..++++.+.+..|.-|.+.+..+
T Consensus 44 R~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~ 105 (541)
T COG0833 44 RSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFY 105 (541)
T ss_pred hhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555667778899999998 899999999999889999999999999888888876554
No 46
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=86.10 E-value=12 Score=36.21 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=37.6
Q ss_pred CCCCcHHHHHHHHHHhhhhhhhhHHHHH--HHhcChhHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 114 APYGRYWDALSHMIKGALGTGILTMPHA--FKDSGYLLGFLGTVAIGAFTTSCIQILVR 170 (236)
Q Consensus 114 ~~~~s~~~a~~~l~k~~iG~GiL~lP~a--f~~~G~~~G~i~l~~~~~ls~yt~~lLv~ 170 (236)
+++.+.++....-+.+++|+|++.+|-. ...+|.. ..+..++.++.+........+
T Consensus 27 ~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaE 84 (557)
T TIGR00906 27 KRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAE 84 (557)
T ss_pred hhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999863 3457754 244444444544444433333
No 47
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=84.87 E-value=21 Score=33.03 Aligned_cols=58 Identities=9% Similarity=0.033 Sum_probs=36.5
Q ss_pred CCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 113 LAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVR 170 (236)
Q Consensus 113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~ 170 (236)
.+++.+.++...-.+.+++|....+.+.++..+|+..-.+..++.+++....+..+.|
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aE 62 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAE 62 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888888888888844456688889999864344444444443333333333
No 48
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=84.14 E-value=35 Score=31.51 Aligned_cols=102 Identities=20% Similarity=0.201 Sum_probs=71.4
Q ss_pred CCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy4519 116 YGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFT--TSCIQILVRAQYELCRRKRIPSLTYPEILGAA 193 (236)
Q Consensus 116 ~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls--~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~ 193 (236)
+++.+..+-|=..++-|+|=+-=|-.=..-||+++.+-+++-+++. .|=+.-+.-+. |+ ...|..|++++-
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~Sv-----R~--~G~Si~~i~~~~ 123 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASV-----RH--KGKSIGEIAGKY 123 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhh-----cC--CCccHHHHHHHH
Confidence 4555667778888999999998888779999999877776655442 22222222221 22 235888888765
Q ss_pred hhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhccc
Q psy4519 194 LSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASN 234 (236)
Q Consensus 194 ~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~n 234 (236)
.||.+|.+..+++.+..+-+..++...+++.
T Consensus 124 ----------lG~~~~~lf~~f~~~~lilV~avF~~v~a~~ 154 (376)
T PF02554_consen 124 ----------LGKRAKKLFLIFIFFLLILVIAVFADVVANT 154 (376)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999988888888888887766553
No 49
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=84.04 E-value=5.8 Score=37.53 Aligned_cols=59 Identities=17% Similarity=0.309 Sum_probs=39.2
Q ss_pred cCCCCCcHHHHHHHHHHhhhhhhhhHHHH-HHHhcChhHHH--HHHHHHHHHHHHHHHHHHHH
Q psy4519 112 WLAPYGRYWDALSHMIKGALGTGILTMPH-AFKDSGYLLGF--LGTVAIGAFTTSCIQILVRA 171 (236)
Q Consensus 112 ~~~~~~s~~~a~~~l~k~~iG~GiL~lP~-af~~~G~~~G~--i~l~~~~~ls~yt~~lLv~~ 171 (236)
+.+++.+.+++..-.+.+++|+|++..|. +.+++|-. |. +..++.+++....+....+.
T Consensus 39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~-g~~~~~~ii~~i~~~~~al~~aEL 100 (501)
T TIGR00911 39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSV-GLALIMWAVCGIFSIVGALVYAEL 100 (501)
T ss_pred ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCCh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566899999999999999999998876 46667743 32 33344455444444444443
No 50
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=83.77 E-value=22 Score=33.72 Aligned_cols=106 Identities=20% Similarity=0.225 Sum_probs=71.0
Q ss_pred CCCCcHHHHHHHHHHhhhhhhhh-HHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q psy4519 114 APYGRYWDALSHMIKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 192 (236)
Q Consensus 114 ~~~~s~~~a~~~l~k~~iG~GiL-~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~ 192 (236)
+++.++.+--+--+.+.||||.+ +--.+.+.+|.-. ++..++.+++.+.-|+.|.+.... +....|+.+.++.
T Consensus 12 ~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSv-lLaY~I~G~~~f~iMRaLGEm~~~-----~p~~gSF~~~a~~ 85 (462)
T COG1113 12 KRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSV-LLAYLIAGIFVFLIMRALGEMLVA-----NPVSGSFSDYARK 85 (462)
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHH-HHHHHHHHHHHHHHHHHHHHHHHh-----CCCCCcHHHHHHH
Confidence 34566666667778899999987 7778999999774 677788888888888888775422 2234689999988
Q ss_pred HhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHH
Q psy4519 193 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYL 228 (236)
Q Consensus 193 ~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~ 228 (236)
.+ ||.+ -.+-.|-.++.-+.......-....|+
T Consensus 86 ~l--G~~A-gf~tgW~YW~~wv~v~~ae~tAi~~y~ 118 (462)
T COG1113 86 YL--GPWA-GFLTGWTYWFFWVLVGIAELTAIGIYL 118 (462)
T ss_pred Hh--cchH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 7743 223334455555555554444444443
No 51
>PRK15015 carbon starvation protein A; Provisional
Probab=80.94 E-value=23 Score=35.16 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=63.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhcCc
Q psy4519 121 DALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFT--TSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGP 198 (236)
Q Consensus 121 ~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls--~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~~G~ 198 (236)
--+-|=+.++-|+|=+-=|-.-.+-||+++.+-+++-+++. .+=+..|.-+. |+ +..|..|+++.-
T Consensus 87 VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~-----R~--~GrSig~ia~~~----- 154 (701)
T PRK15015 87 VLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVST-----RR--DGRSLGELVKEE----- 154 (701)
T ss_pred chhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeee-----cC--CCccHHHHHHHH-----
Confidence 34557788899999998898778999999988877665442 23333333321 22 224777777654
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHhhcc
Q psy4519 199 ARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIAS 233 (236)
Q Consensus 199 ~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~ 233 (236)
.|+.++.+..+.+.+...=...++-..+++
T Consensus 155 -----iG~~~~~lfli~i~~iliiviAvfalvvv~ 184 (701)
T PRK15015 155 -----MGPTAGVIALVACFMIMVIILAVLAMIVVK 184 (701)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778777777766666666666555443
No 52
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=78.28 E-value=21 Score=33.02 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=38.8
Q ss_pred CCCCCcHHHHHHHHHHhhhhhhhhHHHHH-HHhcChh-HHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 113 LAPYGRYWDALSHMIKGALGTGILTMPHA-FKDSGYL-LGFLGTVAIGAFTTSCIQILVRA 171 (236)
Q Consensus 113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~a-f~~~G~~-~G~i~l~~~~~ls~yt~~lLv~~ 171 (236)
.+++.+.+++..-.+..++|+|++..|.. ....|-. ..++..++.++++........|.
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl 66 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAEL 66 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999998875 4455632 23444455555555444444443
No 53
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=77.87 E-value=35 Score=31.11 Aligned_cols=96 Identities=16% Similarity=0.079 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhc
Q psy4519 118 RYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFT-TSCIQILVRAQYELCRRKRIPSLTYPEILGAALSE 196 (236)
Q Consensus 118 s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls-~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~~ 196 (236)
+++++....+.+++|+|++..| ...+.|.. ..+..++.+.+. ........| ++++... ....-.-.+.++
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~e----l~~~~p~-~GG~y~~~~~~~-- 72 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAE----LSSAYPS-AGGIYVWVSRAF-- 72 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHH----HHTTTTS-STTHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHH----HhccCCC-cCeeeehhhhcc--
Confidence 6788899999999999999999 88788876 344444444443 333333333 3322111 123333344443
Q ss_pred CchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHHh
Q psy4519 197 GPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLF 230 (236)
Q Consensus 197 G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i~ 230 (236)
||....++.....+.....+..+...
T Consensus 73 --------g~~~g~~~~~~~~~~~~~~~~~~~~~ 98 (426)
T PF13520_consen 73 --------GPFWGFIVGWLYWVAYILSLASVASS 98 (426)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------cccchhcccceeEEEeeccccccccc
Confidence 44445555555555555544444433
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=73.35 E-value=25 Score=31.98 Aligned_cols=90 Identities=19% Similarity=0.185 Sum_probs=60.8
Q ss_pred HHHHHHHhhhhhhhhHHHH---HHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhcCc
Q psy4519 122 ALSHMIKGALGTGILTMPH---AFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGP 198 (236)
Q Consensus 122 a~~~l~k~~iG~GiL~lP~---af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~~G~ 198 (236)
-.+-.+-+++|+|.=+==. -|..-|+. |...+++.+++-..+...+.+..++.+ ..+|.|+-++.+ ||
T Consensus 8 ~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~------a~~y~~~~~~v~--~~ 78 (349)
T COG3949 8 WAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN------ATSYREILKYVS--GP 78 (349)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc------ccchHHHHHHHh--hH
Confidence 3455566788888654222 23334555 677777777777777777777666553 358999999886 44
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhHhHHHHHH
Q psy4519 199 ARFRWLAPYGRGLSFTAMIVDEIGALCVYL 228 (236)
Q Consensus 199 ~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~ 228 (236)
....+.|+.+.+..+++|++-+
T Consensus 79 --------~~~ki~d~~iif~lf~~~vVM~ 100 (349)
T COG3949 79 --------KFAKIIDIIIIFFLFSTAVVML 100 (349)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHh
Confidence 4467778888888888887643
No 55
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=72.61 E-value=47 Score=30.41 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=26.4
Q ss_pred CCCCCcHHH-HHHHHHHhhhhhhhhHHHHHHHhcC
Q psy4519 113 LAPYGRYWD-ALSHMIKGALGTGILTMPHAFKDSG 146 (236)
Q Consensus 113 ~~~~~s~~~-a~~~l~k~~iG~GiL~lP~af~~~G 146 (236)
.+++.+.++ ...-....++|.|++.+|......+
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~ 44 (466)
T COG0531 10 LKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA 44 (466)
T ss_pred cCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc
Confidence 345566666 7778888899999999998887765
No 56
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=64.69 E-value=1.3e+02 Score=28.53 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4519 7 LFIALIGSLCLPFMAISLPALTDLITFWS 35 (236)
Q Consensus 7 ~~isLvGa~~~s~l~~i~P~~~~~~~~~~ 35 (236)
.+.+.+-|+.....+++.|-+=-+.|+..
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~ 98 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGG 98 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 56677788899999999998888887543
No 57
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=63.88 E-value=1.3e+02 Score=28.08 Aligned_cols=28 Identities=29% Similarity=0.144 Sum_probs=17.3
Q ss_pred hhhhHHHHHHHHHHHHhHhHHHHHHHhh
Q psy4519 204 LAPYGRGLSFTAMIVDEIGALCVYLLFI 231 (236)
Q Consensus 204 ~g~~g~~~v~~~i~~~~~G~c~~Y~i~i 231 (236)
||+.|..+..+...+..+|-..+-..+.
T Consensus 86 FG~~Gs~~~~~~~~i~~igW~av~~~~~ 113 (442)
T TIGR00800 86 FGIYGSLLPSLLRIVMAIGWYGVQAWVG 113 (442)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777776666666555444333
No 58
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=63.86 E-value=94 Score=28.90 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=29.8
Q ss_pred HHhhhhhhhhHHHH-HHHhcChhHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 127 IKGALGTGILTMPH-AFKDSGYLLGFLGTVAIGAFTTSCIQILVR 170 (236)
Q Consensus 127 ~k~~iG~GiL~lP~-af~~~G~~~G~i~l~~~~~ls~yt~~lLv~ 170 (236)
+.+++|+|++-.|- +++++|.. .++..++.+++....+....|
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~~-~ll~~~i~gi~~~~~al~~aE 47 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGPA-VLLAYLFAGLLVVMIMRMLAE 47 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHH
Confidence 45789999998777 88899963 566666666665555444444
No 59
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=61.80 E-value=65 Score=30.49 Aligned_cols=31 Identities=16% Similarity=0.010 Sum_probs=26.3
Q ss_pred hhhhhHHHHHHHHHHHHhHhHHHHHHHhhcc
Q psy4519 203 WLAPYGRGLSFTAMIVDEIGALCVYLLFIAS 233 (236)
Q Consensus 203 ~~g~~g~~~v~~~i~~~~~G~c~~Y~i~i~~ 233 (236)
.||++|.++..+.+.++++|-..+-.+.-++
T Consensus 90 ~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~ 120 (442)
T COG1457 90 PFGVKGSILPSLLNGITLIGWFGVNVILSGI 120 (442)
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 3789999999999999999999887776554
No 60
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=58.59 E-value=46 Score=24.34 Aligned_cols=47 Identities=11% Similarity=0.189 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCc-hHHHHHHHHHHHHHHHHHHh
Q psy4519 13 GSLCLPFMAISLPALTDLITFWSSHHGLS-KALFITKHVVIFLIAVVGCY 61 (236)
Q Consensus 13 Ga~~~s~l~~i~P~~~~~~~~~~~~~~~~-~~~~~~~~~~ii~~G~~~~v 61 (236)
|++.+..+-++.-+++-..++++.+.... .|+ ...++.+++|++..+
T Consensus 13 ~vli~GiiLL~~aCIfAfidfsK~~~~~~~~wR--alSii~FI~giil~l 60 (92)
T PF05767_consen 13 GVLIGGIILLIAACIFAFIDFSKNTKPTDYTWR--ALSIICFILGIILTL 60 (92)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccCCCCchhHHH--HHHHHHHHHHHHHHH
Confidence 67777788888888888888876432222 343 457777777766543
No 61
>KOG1287|consensus
Probab=55.10 E-value=22 Score=33.89 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=42.3
Q ss_pred cCCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcC--hhHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 112 WLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSG--YLLGFLGTVAIGAFTTSCIQILVR 170 (236)
Q Consensus 112 ~~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G--~~~G~i~l~~~~~ls~yt~~lLv~ 170 (236)
+.+|+.+.+.+...++..++|+|++..|......+ ...+++.-++.++++.-....-.|
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaE 69 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAE 69 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888989999999999999999766554 334455556666666666544433
No 62
>PHA03048 IMV membrane protein; Provisional
Probab=54.90 E-value=48 Score=24.18 Aligned_cols=47 Identities=9% Similarity=0.134 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHh
Q psy4519 13 GSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCY 61 (236)
Q Consensus 13 Ga~~~s~l~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v 61 (236)
|++.+..+-++.-+++-..++.+.+.....|+ ...++.+++|++.++
T Consensus 13 ~vli~GIiLL~~aCIfAfidfsK~k~~~~~wR--alsii~FIlgivl~l 59 (93)
T PHA03048 13 TALIGGIILLAASCIFAFVDFSKNKATVTVWR--ALSGIAFVLGIVMTI 59 (93)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcCCCcchhHH--HHHHHHHHHHHHHHH
Confidence 55666677777778887777765433334454 467777777876654
No 63
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=52.97 E-value=1.3e+02 Score=28.24 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=40.8
Q ss_pred CCCCCcHHHHHHHHHHhhhhhhhh-HHHHHHHhcChhHHHHHHHHHHH---HHHHHHHHHHH
Q psy4519 113 LAPYGRYWDALSHMIKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGA---FTTSCIQILVR 170 (236)
Q Consensus 113 ~~~~~s~~~a~~~l~k~~iG~GiL-~lP~af~~~G~~~G~i~l~~~~~---ls~yt~~lLv~ 170 (236)
++++.|.+||+..-+-+.+|+|-. +..-|..-.|.- .++-+-++++ .+-|+-..|.+
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPG-AiFWMWi~a~~Gmatk~~E~~La~ 75 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPG-AIFWMWISALLGMATKYAEVTLAQ 75 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999977 699999888854 3444444444 34455555543
No 64
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=52.91 E-value=98 Score=23.99 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=32.7
Q ss_pred HHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHH
Q psy4519 126 MIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPE 188 (236)
Q Consensus 126 l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~d 188 (236)
++-+-+|.+++..-- +.|-+.+....++.-+...|+..+-.+=+....+|.. ..|.|
T Consensus 43 vllg~l~~~l~n~~~---~~g~~~a~vftivaif~~~ya~~lY~kRa~~Ir~R~~---~pyDD 99 (126)
T COG5264 43 VLLGGLGFALYNSGD---RLGMISAYVFTIVAIFCGFYALMLYLKRAVNIRQRSA---GPYDD 99 (126)
T ss_pred HHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCcc
Confidence 333456666655544 6777766666655556667777666554555544433 34665
No 65
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=50.88 E-value=2.5e+02 Score=27.47 Aligned_cols=95 Identities=19% Similarity=0.187 Sum_probs=59.6
Q ss_pred CCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy4519 116 YGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFT--TSCIQILVRAQYELCRRKRIPSLTYPEILGAA 193 (236)
Q Consensus 116 ~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls--~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~ 193 (236)
+++.+..+-|=+-++-|+|=+-=|-.-.+-||+++.+-+++-+++. .+=+..|.-+. |+ +..|-.|+++.-
T Consensus 51 Ptnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~Sv-----R~--~G~Si~~ia~~~ 123 (575)
T COG1966 51 PTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSV-----RH--GGKSIGEIAGKY 123 (575)
T ss_pred cCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeee-----cc--CCccHHHHHHHH
Confidence 3445556667788899999999999999999999988877766543 23332332221 22 234777877654
Q ss_pred hhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHH
Q psy4519 194 LSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVY 227 (236)
Q Consensus 194 ~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y 227 (236)
.|+..+.+..+...+-.+=+..++
T Consensus 124 ----------lG~~a~~~~~~~~l~iliiv~Avf 147 (575)
T COG1966 124 ----------LGRTAKVFFLLLALILLILVGAVF 147 (575)
T ss_pred ----------hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 355666666665544444333333
No 66
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=43.95 E-value=96 Score=22.55 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC--CCchHHHHHHHHHHHHHHHHHHh
Q psy4519 13 GSLCLPFMAISLPALTDLITFWSSHH--GLSKALFITKHVVIFLIAVVGCY 61 (236)
Q Consensus 13 Ga~~~s~l~~i~P~~~~~~~~~~~~~--~~~~~~~~~~~~~ii~~G~~~~v 61 (236)
|++.+..+-++.-+++-..++.+... +...|+ ...++.+++|++..+
T Consensus 13 ~vli~GIiLL~~ACIFAfidFSK~~s~~~~~~wR--alSii~FIlG~vl~l 61 (91)
T PHA02680 13 GVLICGVLLLTAACVFAFVDFSKNTSNVTDYVWR--ALSVTCFIVGAVLLL 61 (91)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCcchhHH--HHHHHHHHHHHHHHH
Confidence 55666666777777777777755321 233454 467777777876553
No 67
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=43.76 E-value=47 Score=30.64 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy4519 5 LELFIALIGSLCLPFMAISLPALTDLITFWSS 36 (236)
Q Consensus 5 ~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~ 36 (236)
|-..+++.| ...+.+..++|++|..+.++++
T Consensus 336 F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~ 366 (394)
T PF03222_consen 336 FLIALGYAG-IGIAILLGILPALMVWKARKRK 366 (394)
T ss_pred HHHHHHhhc-HHHHHHHHHHHHHHHHHHHccc
Confidence 446788999 9999999999999988876654
No 68
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=41.77 E-value=3e+02 Score=25.85 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=31.4
Q ss_pred CCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHH
Q psy4519 113 LAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIG 158 (236)
Q Consensus 113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~ 158 (236)
.+++.+.++.....+.+++|.+ .+|.++.+.|.. .++..++.+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~ 47 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSA 47 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHH
Confidence 3567999999888889999976 568888888875 344443333
No 69
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=39.82 E-value=1.5e+02 Score=26.49 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHH-----HHHHHHHHhccCCCCC--chHHHHHHHHHHHHHHHHHHhchhHHhHHHHHHH
Q psy4519 6 ELFIALIGSLCLPFMAISL-----PALTDLITFWSSHHGL--SKALFITKHVVIFLIAVVGCYTGVQASVREILIE 74 (236)
Q Consensus 6 ~~~isLvGa~~~s~l~~i~-----P~~~~~~~~~~~~~~~--~~~~~~~~~~~ii~~G~~~~v~Gty~si~~ii~~ 74 (236)
+.+++++|++.+..++..+ +..-.+...+...... ..|. --+.++++|++....|.+.++..-++.
T Consensus 233 g~~~g~~G~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ig~l~s~~s~~r~L~~ 305 (309)
T PRK11026 233 GALLGFSGALLSLILSEILVWRLSSAVTYVADVFGTKFDLNGLSFD---ECLLLLLVCSMIGWVAAWLATVQHLRR 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999998887765433 2111111111110110 1121 123456667777778888888777643
No 70
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=39.75 E-value=2.4e+02 Score=24.08 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4519 148 LLGFLGTVAIGAFTTSCIQILVRAQYELC 176 (236)
Q Consensus 148 ~~G~i~l~~~~~ls~yt~~lLv~~~~~~~ 176 (236)
+...+..++..+++......+.+.-++..
T Consensus 132 l~~~i~~~v~~i~~i~~~~~~~K~~k~i~ 160 (248)
T PF11368_consen 132 LFIIIPFLVLLILTIILQKFLRKTIKKIR 160 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444445566666667777777666654
No 71
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=37.85 E-value=3.6e+02 Score=25.61 Aligned_cols=103 Identities=16% Similarity=-0.006 Sum_probs=60.0
Q ss_pred CcHHHHHHHHHHhhhh-hhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhh
Q psy4519 117 GRYWDALSHMIKGALG-TGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALS 195 (236)
Q Consensus 117 ~s~~~a~~~l~k~~iG-~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~ 195 (236)
.+.+-.+....-+.++ --.+++|-.....|+...-+..... +........+..-..++.+ +.+..|.+|.-+.
T Consensus 40 lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~-~~~~~~~~~~~~rl~~~~~--~~~~~T~~d~l~~--- 113 (493)
T COG0591 40 LGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLL-IGAFLLWLLFAPRLRRLAK--ARGATTIPDFLEA--- 113 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc--ccCCccHHHHHHH---
Confidence 4444556666666666 6777999999999987433333321 2222222223222223321 2234688887653
Q ss_pred cCchhhhhhh-hhHHHHHHHHHHHHhHhHHHHHHHhhc
Q psy4519 196 EGPARFRWLA-PYGRGLSFTAMIVDEIGALCVYLLFIA 232 (236)
Q Consensus 196 ~G~~~~r~~g-~~g~~~v~~~i~~~~~G~c~~Y~i~i~ 232 (236)
||| +..|.+..+.+.+..++-+..=++-.+
T Consensus 114 -------Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~ 144 (493)
T COG0591 114 -------RFGSKILRILSALIIIVFFIPYIALQLVAGG 144 (493)
T ss_pred -------HcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 778888888888877777665444433
No 72
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=37.08 E-value=2.5e+02 Score=23.43 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=22.9
Q ss_pred CcHHHHHHHHHHhhhhhhhhHHHHHHHh
Q psy4519 117 GRYWDALSHMIKGALGTGILTMPHAFKD 144 (236)
Q Consensus 117 ~s~~~a~~~l~k~~iG~GiL~lP~af~~ 144 (236)
..+..+..+.+..++|.-+.-+||.+..
T Consensus 130 ~p~~~al~~~~sf~lg~liPllp~~~~~ 157 (213)
T PF01988_consen 130 SPWKAALATFLSFILGGLIPLLPYFFLP 157 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455677888888999999999998876
No 73
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=35.23 E-value=1.8e+02 Score=21.37 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=28.6
Q ss_pred ccCCCCCccccCCCCCcHHHHHHHHHHhhhhhhhhH
Q psy4519 102 ALSEGPPSVRWLAPYGRYWDALSHMIKGALGTGILT 137 (236)
Q Consensus 102 ~~~~~~~~~~~~~~~~s~~~a~~~l~k~~iG~GiL~ 137 (236)
+.+|.|.-+.--+.+.+-.++...-+.+.+|+|+++
T Consensus 48 ~p~Y~PWf~PlwEPpsGEiESlLFaLQAaiGagiIg 83 (91)
T TIGR01165 48 GPDYKPWFSPLWEPPSGEIESLLFALQAALGALVIG 83 (91)
T ss_pred CCCCcccccccccCCcchHHHHHHHHHHHhhheeee
Confidence 445777776544566888999999999999999975
No 74
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=33.78 E-value=3.7e+02 Score=24.47 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHHHhhhhhhhh-HHHHHHHhcChh
Q psy4519 115 PYGRYWDALSHMIKGALGTGIL-TMPHAFKDSGYL 148 (236)
Q Consensus 115 ~~~s~~~a~~~l~k~~iG~GiL-~lP~af~~~G~~ 148 (236)
++.+++...+.+.-+.++++.+ +.|....+.|+.
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~ 37 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA 37 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH
Confidence 3567778788887777776554 888877777854
No 75
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=33.17 E-value=81 Score=25.52 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=7.9
Q ss_pred hhhhhhhhHHHHH
Q psy4519 129 GALGTGILTMPHA 141 (236)
Q Consensus 129 ~~iG~GiL~lP~a 141 (236)
..+|.+++++|..
T Consensus 84 ~~i~l~~~~~~~v 96 (181)
T PF08006_consen 84 AIIGLGLLSFIIV 96 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 3567777766644
No 76
>PHA02898 virion envelope protein; Provisional
Probab=33.03 E-value=1.5e+02 Score=21.56 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHHHHHHHHHh
Q psy4519 13 GSLCLPFMAISLPALTDLITFWSSHHG-LSKALFITKHVVIFLIAVVGCY 61 (236)
Q Consensus 13 Ga~~~s~l~~i~P~~~~~~~~~~~~~~-~~~~~~~~~~~~ii~~G~~~~v 61 (236)
|++.+..+-++.-+++-..++.+.+.. ...|+ ...++.+++|++..+
T Consensus 13 ~vli~GIiLL~~ACIfAfidfSK~~~~~~~~wR--alSii~FIlgivl~l 60 (92)
T PHA02898 13 YVVAFGIILLIVACICAYIELSKSEKPADSALR--SISIISFILAIILIL 60 (92)
T ss_pred hHHHHHHHHHHHHHHHheehhhcCCCcchhHHH--HHHHHHHHHHHHHHH
Confidence 455666666777777777776543322 23443 467777777766553
No 77
>PRK11375 allantoin permease; Provisional
Probab=31.89 E-value=2.8e+02 Score=26.35 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=8.0
Q ss_pred CCHHHHHHHHh
Q psy4519 184 LTYPEILGAAL 194 (236)
Q Consensus 184 ~sY~di~~~~~ 194 (236)
.++.-+.|.+|
T Consensus 89 l~~~v~sR~sF 99 (484)
T PRK11375 89 VPFAMILRASY 99 (484)
T ss_pred CChhHhHHHHH
Confidence 56777788776
No 78
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=30.34 E-value=4.5e+02 Score=24.47 Aligned_cols=34 Identities=6% Similarity=-0.158 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHHHHhhhhhhhh-HHHHHHHhcChh
Q psy4519 115 PYGRYWDALSHMIKGALGTGIL-TMPHAFKDSGYL 148 (236)
Q Consensus 115 ~~~s~~~a~~~l~k~~iG~GiL-~lP~af~~~G~~ 148 (236)
++.+++.....+.-+.+|++.+ +.|-...+.|+.
T Consensus 40 r~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~ 74 (471)
T TIGR02119 40 RSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLG 74 (471)
T ss_pred CcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHH
Confidence 3578888888999988887765 788877777864
No 79
>KOG4580|consensus
Probab=30.02 E-value=2.5e+02 Score=21.29 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=30.8
Q ss_pred HHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy4519 126 MIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRI 181 (236)
Q Consensus 126 l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~ 181 (236)
++-+-+|.+++..-- +.|-+.+.+..++.-+...|+..+-..-+....+|.+.
T Consensus 28 vlLg~l~~~l~n~~~---~~g~~~a~v~t~vaif~~~ya~~lYlwRa~~I~~R~~~ 80 (112)
T KOG4580|consen 28 VLLGGLGFALYNSGD---RLGILSAYVYTLVAIFCGFYALFLYLWRASMIRQRSPG 80 (112)
T ss_pred HHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 334456666655444 66666666555555566677776665555556555443
No 80
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=29.87 E-value=63 Score=24.29 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=18.0
Q ss_pred hcChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4519 144 DSGYLL-GFLGTVAIGAFTTSCIQILVRAQYELCR 177 (236)
Q Consensus 144 ~~G~~~-G~i~l~~~~~ls~yt~~lLv~~~~~~~~ 177 (236)
++|.+. .++.+.++++.+.|-.+..-+-+.++++
T Consensus 33 ~AGi~sq~~lv~glvgW~~sYlfRV~t~~MTy~~Q 67 (104)
T PF11460_consen 33 SAGIWSQALLVLGLVGWVSSYLFRVVTGKMTYMQQ 67 (104)
T ss_pred hhhHHHHHHHHHHHHHHHhHHHhhhccCCCcHHHH
Confidence 345443 3444555666666666555544444444
No 81
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=28.03 E-value=4.6e+02 Score=23.74 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=37.8
Q ss_pred CCCcHHHHHHHHHHhhhhhh-hhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q psy4519 115 PYGRYWDALSHMIKGALGTG-ILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAA 193 (236)
Q Consensus 115 ~~~s~~~a~~~l~k~~iG~G-iL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~ 193 (236)
++.+++...+.+.-+.+|++ +++.|-...+.|+.. ....+............+.+ ++. |. +..|.+|.-++-
T Consensus 6 r~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~---~~r-~~--~~~T~~e~~~~R 78 (406)
T PF00474_consen 6 RSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAP---RLR-RS--GAVTIPEYLEKR 78 (406)
T ss_dssp S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHH---HHH-HT--T--SHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHH---hhc-cc--chhhhhhhhhhh
Confidence 45778888888888888775 458899888888763 22222222222223333333 332 21 236778876643
No 82
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=27.77 E-value=3.9e+02 Score=22.94 Aligned_cols=26 Identities=8% Similarity=-0.040 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhchhHHhHHHHH
Q psy4519 47 TKHVVIFLIAVVGCYTGVQASVREIL 72 (236)
Q Consensus 47 ~~~~~ii~~G~~~~v~Gty~si~~ii 72 (236)
+.-+.-.+-|-+.+..|-|.|.+.-.
T Consensus 54 l~Gla~liAgA~SMa~GeYlS~~sq~ 79 (241)
T cd02435 54 TGGLAELAAGAISMGLGGYLAAKSER 79 (241)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 34555566678888889998887753
No 83
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=26.86 E-value=1.4e+02 Score=27.94 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=37.8
Q ss_pred HHhhhhhhhh-HHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 127 IKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYEL 175 (236)
Q Consensus 127 ~k~~iG~GiL-~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~ 175 (236)
+-+++|+|++ +.+.+..++|.....+..++.+++...++.-+.+..++.
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~ 56 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRF 56 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhh
Confidence 4567889988 578899999997667777888888877777777766554
No 84
>COG5547 Small integral membrane protein [Function unknown]
Probab=26.65 E-value=2e+02 Score=19.25 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhchhHHhHHHHHHHH
Q psy4519 47 TKHVVIFLIAVVGCYTGVQASVREILIEV 75 (236)
Q Consensus 47 ~~~~~ii~~G~~~~v~Gty~si~~ii~~~ 75 (236)
+|.+++++++..+...|.|.-=.++++++
T Consensus 30 wKtilviil~~lGv~iGl~~~r~g~id~f 58 (62)
T COG5547 30 WKTILVIILILLGVYIGLYKKRTGIIDNF 58 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 46777777777777788887777677554
No 85
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=26.25 E-value=3.6e+02 Score=25.65 Aligned_cols=58 Identities=17% Similarity=0.069 Sum_probs=41.5
Q ss_pred cCCCCCcHHHHHHHHHHhhhhhhhh-HHHHHHHhcChhHHHH---HHHHHHHHHHHHHHHHHH
Q psy4519 112 WLAPYGRYWDALSHMIKGALGTGIL-TMPHAFKDSGYLLGFL---GTVAIGAFTTSCIQILVR 170 (236)
Q Consensus 112 ~~~~~~s~~~a~~~l~k~~iG~GiL-~lP~af~~~G~~~G~i---~l~~~~~ls~yt~~lLv~ 170 (236)
+.+++.|.+||+..-+-+.+|+|-+ +..-|..-.|.- .++ +..+.+..+-|.-..|.+
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPG-AvFWMWi~Al~Gmat~f~E~~La~ 119 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPG-AVFWMWIVALFGMATKFAESTLAQ 119 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999988 589999888843 233 344445555565555543
No 86
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=26.21 E-value=3.6e+02 Score=24.02 Aligned_cols=68 Identities=10% Similarity=0.185 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHHH-----HHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHhchhHHhHHHHHHH
Q psy4519 6 ELFIALIGSLCLPFMAISL-----PALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVREILIE 74 (236)
Q Consensus 6 ~~~isLvGa~~~s~l~~i~-----P~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gty~si~~ii~~ 74 (236)
+.+++++|++.+..++.++ +.+-.+...+.-....... .+.--..++.+|++....|.+.++..-.+.
T Consensus 233 g~~~gl~G~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~g~~lg~lgs~~s~~r~Lr~ 305 (309)
T TIGR00439 233 GMWQSIFGALVSLILSGWLLSAVRSAVDAVFKPFGLNFGWNGL-YVGELGLLLGFCIALGVVGAWLATTQHLLC 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999887664321 1121211112110111010 011234566777888888888888877644
No 87
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=25.32 E-value=4.2e+02 Score=22.39 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=18.6
Q ss_pred CcHHH-HHHHHHHhhhhhhhhHHHHHHHh
Q psy4519 117 GRYWD-ALSHMIKGALGTGILTMPHAFKD 144 (236)
Q Consensus 117 ~s~~~-a~~~l~k~~iG~GiL~lP~af~~ 144 (236)
.++++ ++...+.-++|.=+--+||.|..
T Consensus 134 ~~p~~aal~s~~sf~lg~liPllpy~~~~ 162 (218)
T cd02432 134 ANPWQAALASAISFSVGALLPLLAILLAP 162 (218)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35555 55566666777777789998744
No 88
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=24.96 E-value=3.5e+02 Score=21.36 Aligned_cols=75 Identities=17% Similarity=0.114 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhhcCchhhhhhhh--hHHHHHHHHHHHHhHhHHH
Q psy4519 148 LLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALSEGPARFRWLAP--YGRGLSFTAMIVDEIGALC 225 (236)
Q Consensus 148 ~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~~G~~~~r~~g~--~g~~~v~~~i~~~~~G~c~ 225 (236)
+.|+..+++.+.++......+-...++...|.. ...-.||.+.+-++| .|++ +=...+.....+..+|...
T Consensus 35 ~~Gt~aL~ls~~l~~mig~yl~~~~rr~~~rPE--D~~daEI~dgAGe~G-----fFsP~SwWPl~la~~~al~~lGla~ 107 (137)
T PF12270_consen 35 WVGTVALVLSGGLALMIGFYLRFTARRIGPRPE--DREDAEIADGAGELG-----FFSPHSWWPLVLAAAAALVFLGLAF 107 (137)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc--cccccccccCCCCcC-----cCCCccHhHHHHHHHHHHHHHHHHH
Confidence 347888889998888888888777666644322 234456665553322 1222 2244555555555666655
Q ss_pred HHHH
Q psy4519 226 VYLL 229 (236)
Q Consensus 226 ~Y~i 229 (236)
..++
T Consensus 108 g~Wl 111 (137)
T PF12270_consen 108 GWWL 111 (137)
T ss_pred HHHH
Confidence 5443
No 89
>PF03203 MerC: MerC mercury resistance protein
Probab=24.86 E-value=2.4e+02 Score=21.06 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHhchh
Q psy4519 7 LFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGV 64 (236)
Q Consensus 7 ~~isLvGa~~~s~l~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt 64 (236)
|-++..+|..+..=|+.+|.++-+.-...-......+...+...+.+.+++++...|.
T Consensus 2 D~~gi~~S~LC~iHCl~~P~l~~~l~~~g~~~~~~~~~h~~ll~~~~~i~~~al~~g~ 59 (116)
T PF03203_consen 2 DRLGIGASLLCAIHCLALPALLALLPALGGFFLENEWFHWLLLYLFLPIALLALFRGY 59 (116)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888888877654322100000112222345555555655554443
No 90
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=24.62 E-value=2.1e+02 Score=23.52 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=28.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHhchhHHhHHH
Q psy4519 9 IALIGSLCLP-FMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGVQASVRE 70 (236)
Q Consensus 9 isLvGa~~~s-~l~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gty~si~~ 70 (236)
+.|.||..++ .+++.||.+- ..+++.. .- +.-.-++++++ |+.+.|--+-.+.
T Consensus 73 ~ClLGa~ac~a~~~fmfpVl~----lkPrkFi-Ll---wTmgslLfvl~-Fg~l~Gf~ayl~~ 126 (201)
T COG5102 73 ACLLGAGACSAFLYFMFPVLR----LKPRKFI-LL---WTMGSLLFVLM-FGFLLGFRAYLEG 126 (201)
T ss_pred HHHhhhHHHHHHHHHHHHHHh----cCcccee-ee---hhHHHHHHHHH-HHHHHhHHHHHHh
Confidence 5588998887 7788888652 3343332 11 22344444444 5555565443333
No 91
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=24.39 E-value=2e+02 Score=23.05 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc-hHHHHHHHHHHHHHHHHHHhchhHHhHHHHHHHHh
Q psy4519 10 ALIGSLCLPFMAISLPALTDLITFWSSHHGLS-KALFITKHVVIFLIAVVGCYTGVQASVREILIEVF 76 (236)
Q Consensus 10 sLvGa~~~s~l~~i~P~~~~~~~~~~~~~~~~-~~~~~~~~~~ii~~G~~~~v~Gty~si~~ii~~~~ 76 (236)
+++|+..+...+|..|-+..-+-- ....+.. ++ -+-.+-+++|+..+++|+..+-+-..++..
T Consensus 33 ~~~~g~~~~~~gF~~Pt~y~~yk~-~~~~gv~~~~---~~pflSf~lG~~~m~~~~~~~~k~~y~kk~ 96 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFAPTAYYRYKT-GAIKGVPVPR---QKPFLSFLLGLGAMMAGSQLAGKYQYNKKL 96 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhc-ccccCCcCCc---cCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888899999966443210 0111111 11 244556778999999999998888875533
No 92
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=24.36 E-value=5.8e+02 Score=23.71 Aligned_cols=56 Identities=18% Similarity=0.133 Sum_probs=32.4
Q ss_pred CCCcHHHHHHHHHHhhhh--hhhh-HHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 115 PYGRYWDALSHMIKGALG--TGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRA 171 (236)
Q Consensus 115 ~~~s~~~a~~~l~k~~iG--~GiL-~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~ 171 (236)
++.+.++.. .+.-+.+| +|+. .++.+..++|-..-+...++.+++....+..+.|.
T Consensus 12 r~l~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl 70 (482)
T TIGR00907 12 REFSLWSIF-GFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAEL 70 (482)
T ss_pred cccchhHHH-HHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 345666544 33333555 5665 45667888887644556666666666655555444
No 93
>COG3059 Predicted membrane protein [Function unknown]
Probab=24.17 E-value=1.7e+02 Score=23.94 Aligned_cols=46 Identities=17% Similarity=0.074 Sum_probs=23.4
Q ss_pred ccCCCCCccccCCCCCcHHHHHHH---HHHhhhhhhhhHHHHHHHhcChhHH
Q psy4519 102 ALSEGPPSVRWLAPYGRYWDALSH---MIKGALGTGILTMPHAFKDSGYLLG 150 (236)
Q Consensus 102 ~~~~~~~~~~~~~~~~s~~~a~~~---l~k~~iG~GiL~lP~af~~~G~~~G 150 (236)
+.+++|.+.+ -++.+...++.| ++-.++|.++|.=|+. +..|+..|
T Consensus 70 e~~~~pe~~~--w~~~n~tY~~S~~lGi~e~ivgilvL~g~~~-~~~Gl~GG 118 (182)
T COG3059 70 EGEYNPENRE--WHSENNTYAVSNLLGITEVIVGILVLIGLRN-PKAGLLGG 118 (182)
T ss_pred hhccChhhHH--HhhccchhhHHHHhhHHHHHHHHHHHhcccc-chHHHhhh
Confidence 3445555432 223333334434 4556889998875542 34455533
No 94
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=24.03 E-value=4.5e+02 Score=22.27 Aligned_cols=26 Identities=12% Similarity=-0.010 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhchhHHhHHHHH
Q psy4519 47 TKHVVIFLIAVVGCYTGVQASVREIL 72 (236)
Q Consensus 47 ~~~~~ii~~G~~~~v~Gty~si~~ii 72 (236)
+.-..-.+-|-+.+..|.|.|.+.-.
T Consensus 36 i~Gla~liAga~SMa~GeYls~kse~ 61 (225)
T cd02434 36 IIGFANLLADGISMAAGEYVSTKAER 61 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34555566677888899999887763
No 95
>COG5446 Predicted integral membrane protein [Function unknown]
Probab=23.37 E-value=3.1e+02 Score=22.95 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhchhHHhHHHHH
Q psy4519 47 TKHVVIFLIAVVGCYTGVQASVREIL 72 (236)
Q Consensus 47 ~~~~~ii~~G~~~~v~Gty~si~~ii 72 (236)
.+|+.... |+.+++.|...+.+++.
T Consensus 4 frnivftA-~~aGllag~~l~~mQa~ 28 (233)
T COG5446 4 FRNIVFTA-GFAGLLAGLLLTLMQAL 28 (233)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 56766544 78888888888888765
No 96
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=23.28 E-value=2.5e+02 Score=26.10 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCch-HHHHHHHHHHHHHHHHHHh
Q psy4519 5 LELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSK-ALFITKHVVIFLIAVVGCY 61 (236)
Q Consensus 5 ~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~~~~~~~-~~~~~~~~~ii~~G~~~~v 61 (236)
|..-++..|. ..+.+.+++|+++-.+.++.++....| +---..+++++++|++..+
T Consensus 333 F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~ 389 (403)
T PRK15132 333 FVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIG 389 (403)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHH
Confidence 4456777786 578999999999877766533111111 0011357777777776553
No 97
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=23.17 E-value=90 Score=23.28 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=28.9
Q ss_pred ccCCCCCccccCCCCCcHHHHHHHHHHhhhhhhhhHH
Q psy4519 102 ALSEGPPSVRWLAPYGRYWDALSHMIKGALGTGILTM 138 (236)
Q Consensus 102 ~~~~~~~~~~~~~~~~s~~~a~~~l~k~~iG~GiL~l 138 (236)
+.+|.|.-+.--+.+.+-.++...-+.+.+|+|+++.
T Consensus 48 ~p~Y~PWf~PlwEPPsGEiESLLFaLQAAiGAgiIgY 84 (100)
T PRK02898 48 APDYEPWFEPLWEPPSGEIESLLFALQAALGAGIIGY 84 (100)
T ss_pred CCCCcccccccccCCcchHHHHHHHHHHHHhhhhhhe
Confidence 4457777764445668889999999999999998864
No 98
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=22.10 E-value=3.7e+02 Score=20.62 Aligned_cols=54 Identities=11% Similarity=-0.097 Sum_probs=35.1
Q ss_pred CCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHH
Q psy4519 114 APYGRYWDALSHMIKGALGTGILTMPHAFKDSGYL-LGFLGTVAIGAFTTSCIQIL 168 (236)
Q Consensus 114 ~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~-~G~i~l~~~~~ls~yt~~lL 168 (236)
.++.|..+-.+-..-+.+-.-++++|.++- .||+ .+..+.++..+++.+-+--+
T Consensus 18 ~rGlT~~El~~~a~~~~~~g~~~gl~la~~-~g~~a~~pt~~ll~~~~~v~~gg~~ 72 (121)
T PF11990_consen 18 FRGLTADELGLAAGVGFVAGLVVGLPLALL-TGWWAMIPTGALLGPILGVFVGGKL 72 (121)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 467788776666666655557779998887 6776 55555555555555544444
No 99
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=21.44 E-value=2.4e+02 Score=18.26 Aligned_cols=42 Identities=7% Similarity=0.125 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHHHHHHHHH
Q psy4519 19 FMAISLPALTDLITFWSSHHG-LSKALFITKHVVIFLIAVVGC 60 (236)
Q Consensus 19 ~l~~i~P~~~~~~~~~~~~~~-~~~~~~~~~~~~ii~~G~~~~ 60 (236)
...++.-++.++...++++++ +.+++..+..++.+++|++.+
T Consensus 29 g~~~i~~Gi~~l~~~~~~~~~~~~~~~~l~~gi~~i~~Gi~~l 71 (72)
T PF03729_consen 29 GIWLIISGIFQLISAFRRRKGSKGWWWSLLSGILSIVLGIILL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHH
Confidence 344556677777655543322 223333556677777776654
No 100
>KOG1286|consensus
Probab=21.43 E-value=53 Score=31.99 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=39.2
Q ss_pred CCcHHHHHHHHHHhhhhhhhh-HHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 116 YGRYWDALSHMIKGALGTGIL-TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQ 172 (236)
Q Consensus 116 ~~s~~~a~~~l~k~~iG~GiL-~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~ 172 (236)
..+...-.+-=+.+.+|+|++ +...+.++.|-..-++..++.+..++.++..+.+..
T Consensus 31 ~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~ 88 (554)
T KOG1286|consen 31 CLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFA 88 (554)
T ss_pred cCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444456679999998 788899999988666677777766666665555543
No 101
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=20.85 E-value=2e+02 Score=20.30 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHH
Q psy4519 151 FLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 191 (236)
Q Consensus 151 ~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~ 191 (236)
.+++++.+++.+-|.++|++-. ...|..++.|-.+
T Consensus 35 ~~L~~fL~~liVRCfrIllDPY------ssmPtStW~d~~e 69 (81)
T PF11057_consen 35 GLLCLFLGLLIVRCFRILLDPY------SSMPTSTWTDHKE 69 (81)
T ss_pred HHHHHHHHHHHHHHHHHHcChh------hcCCcchhhhhhh
Confidence 3444455555555555555432 2346667777544
No 102
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=20.41 E-value=1.3e+02 Score=28.06 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=27.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHhchh
Q psy4519 3 PNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSKALFITKHVVIFLIAVVGCYTGV 64 (236)
Q Consensus 3 P~~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~G~~~~v~Gt 64 (236)
|..+.+++-+|+.....+.++.|....-.....+.. +... ..+.+++++|+...+.=.
T Consensus 351 ~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~---~g~~-~~~~~v~~~Gi~~~~~~~ 408 (415)
T COG0814 351 GYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVY---GGNF-LLLLLVLLFGILVILSPF 408 (415)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeec---CCCc-hhHHHHHHHHHHHHHHHH
Confidence 334445555555555555555554433211111111 1111 357888888877665433
Done!