Query psy4519
Match_columns 236
No_of_seqs 231 out of 1659
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 19:14:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 96.8 0.019 6.6E-07 51.3 13.0 101 113-229 6-106 (445)
2 3gia_A Uncharacterized protein 92.4 1.9 6.5E-05 38.2 12.7 57 114-171 5-62 (444)
3 2jln_A MHP1; hydantoin, transp 72.6 22 0.00075 32.4 10.0 92 117-225 27-119 (501)
4 4djk_A Probable glutamate/gamm 49.8 1.1E+02 0.0037 27.1 10.1 33 113-148 9-41 (511)
5 3dh4_A Sodium/glucose cotransp 14.8 6.4E+02 0.022 22.6 12.5 35 115-149 20-55 (530)
6 1xc0_A Pardaxin P-4, PA4; BEND 14.7 79 0.0027 17.2 1.4 17 2-18 12-28 (33)
7 3tij_A NUPC family protein; me 14.4 5.7E+02 0.019 22.8 7.8 19 1-19 3-21 (424)
8 1jb0_M Photosystem 1 reaction 12.0 1.8E+02 0.006 16.1 2.4 19 4-22 5-23 (31)
9 1jb0_I Photosystem 1 reaction 9.6 1.7E+02 0.0059 17.0 1.9 16 14-29 12-27 (38)
10 3l1l_A Arginine/agmatine antip 9.0 8.4E+02 0.029 20.5 10.0 30 5-36 350-379 (445)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=96.76 E-value=0.019 Score=51.33 Aligned_cols=101 Identities=7% Similarity=-0.034 Sum_probs=64.3
Q ss_pred CCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q psy4519 113 LAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGA 192 (236)
Q Consensus 113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~ 192 (236)
++++.+.+++....+.+++|+|++.+|....++|.. +.+..++.+++.........+.. ++... ..++-+..++
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~----~~~p~-~Gg~y~~~~~ 79 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMS----FLDPS-PGGSYAYARR 79 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHH----HHCCC-TTTHHHHHHH
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHH----ccCCC-CCCchhhHHh
Confidence 346789999999999999999999999988888974 67777777777666665554443 32222 1234344444
Q ss_pred HhhcCchhhhhhhhhHHHHHHHHHHHHhHhHHHHHHH
Q psy4519 193 ALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLL 229 (236)
Q Consensus 193 ~~~~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~~Y~i 229 (236)
. +|+....++.....+.......++..
T Consensus 80 ~----------~G~~~g~~~g~~~~~~~~~~~~~~~~ 106 (445)
T 3l1l_A 80 C----------FGPFLGYQTNVLYWLACWIGNIAMVV 106 (445)
T ss_dssp H----------SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----------cCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 34555666665555554444444433
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=92.45 E-value=1.9 Score=38.16 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=42.2
Q ss_pred CCCCcHHHHHHHHHHhhhhhhhhHHH-HHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4519 114 APYGRYWDALSHMIKGALGTGILTMP-HAFKDSGYLLGFLGTVAIGAFTTSCIQILVRA 171 (236)
Q Consensus 114 ~~~~s~~~a~~~l~k~~iG~GiL~lP-~af~~~G~~~G~i~l~~~~~ls~yt~~lLv~~ 171 (236)
+++.+.+++....+.+++|+|++..| .+...+|. ...+..++.++++..+...+.+.
T Consensus 5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el 62 (444)
T 3gia_A 5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKL 62 (444)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999876 45666776 45666666666666665555443
No 3
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=72.57 E-value=22 Score=32.42 Aligned_cols=92 Identities=7% Similarity=-0.067 Sum_probs=48.4
Q ss_pred CcHHHHHHHHHHhhhhhhhhHHHHHHHh-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHhh
Q psy4519 117 GRYWDALSHMIKGALGTGILTMPHAFKD-SGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAALS 195 (236)
Q Consensus 117 ~s~~~a~~~l~k~~iG~GiL~lP~af~~-~G~~~G~i~l~~~~~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~~ 195 (236)
.+++.-+...+...+..+.+.+...+.. .+++..++.+++..++....+.++.. ...|.+ .+|.++.|..|
T Consensus 27 ~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~----~G~~~G---l~~~v~~R~~F- 98 (501)
T 2jln_A 27 VGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQS----AAIRWG---INFTVAARMPF- 98 (501)
T ss_dssp BCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHC---CCHHHHTTTTS-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhH----HHhhcC---CChhhhhHhhc-
Confidence 4666666566666666555554443333 33455555544444444433333333 223333 45888877664
Q ss_pred cCchhhhhhhhhHHHHHHHHHHHHhHhHHH
Q psy4519 196 EGPARFRWLAPYGRGLSFTAMIVDEIGALC 225 (236)
Q Consensus 196 ~G~~~~r~~g~~g~~~v~~~i~~~~~G~c~ 225 (236)
|+.|..+..+...+.++|-..
T Consensus 99 ---------G~~Gs~i~~ll~~i~~igw~~ 119 (501)
T 2jln_A 99 ---------GIRGSLIPITLKALLSLFWFG 119 (501)
T ss_dssp ---------CTTTTHHHHHHHHHHHHHHHH
T ss_pred ---------chhHHHHHHHHHHHHHHHHHH
Confidence 556666666666555555544
No 4
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=49.82 E-value=1.1e+02 Score=27.06 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=23.0
Q ss_pred CCCCCcHHHHHHHHHHhhhhhhhhHHHHHHHhcChh
Q psy4519 113 LAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYL 148 (236)
Q Consensus 113 ~~~~~s~~~a~~~l~k~~iG~GiL~lP~af~~~G~~ 148 (236)
.+++.+.++.....+.+++| +.++|. ....|..
T Consensus 9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~ 41 (511)
T 4djk_A 9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS 41 (511)
T ss_dssp ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH
T ss_pred cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH
Confidence 34568999998888888886 567774 5677764
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=14.84 E-value=6.4e+02 Score=22.61 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=27.6
Q ss_pred CCCcHHHHHHHHHHhhhhhhhh-HHHHHHHhcChhH
Q psy4519 115 PYGRYWDALSHMIKGALGTGIL-TMPHAFKDSGYLL 149 (236)
Q Consensus 115 ~~~s~~~a~~~l~k~~iG~GiL-~lP~af~~~G~~~ 149 (236)
++.+++...+.+.-+.+++..+ ++|-.....|+..
T Consensus 20 R~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~ 55 (530)
T 3dh4_A 20 KSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAI 55 (530)
T ss_dssp SCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 3578899888888888777654 8998888888753
No 6
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=14.71 E-value=79 Score=17.18 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=13.5
Q ss_pred CCCchhHHHHHHHHHHH
Q psy4519 2 IPNLELFIALIGSLCLP 18 (236)
Q Consensus 2 iP~~~~~isLvGa~~~s 18 (236)
-|-|..++|-|||-.+|
T Consensus 12 splfktllsavgsalss 28 (33)
T 1xc0_A 12 SPLFKTLLSAVGSALSS 28 (33)
T ss_dssp TTTHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHhhc
Confidence 37888999999987665
No 7
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=14.44 E-value=5.7e+02 Score=22.84 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=10.8
Q ss_pred CCCCchhHHHHHHHHHHHH
Q psy4519 1 MIPNLELFIALIGSLCLPF 19 (236)
Q Consensus 1 ~iP~~~~~isLvGa~~~s~ 19 (236)
++|+.+.++|++|=+..-.
T Consensus 3 ~~~~M~~l~sl~Gi~v~l~ 21 (424)
T 3tij_A 3 AVPRMSLFMSLIGMAVLLG 21 (424)
T ss_dssp -----CHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHH
Confidence 5899999999999766533
No 8
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=12.04 E-value=1.8e+02 Score=16.13 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=13.4
Q ss_pred CchhHHHHHHHHHHHHHHH
Q psy4519 4 NLELFIALIGSLCLPFMAI 22 (236)
Q Consensus 4 ~~~~~isLvGa~~~s~l~~ 22 (236)
+-.-++.|+-|+..+.|++
T Consensus 5 d~Qi~iAL~~Al~~~iLA~ 23 (31)
T 1jb0_M 5 DTQVYVALVIALLPAVLAF 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456778888887777765
No 9
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=9.64 E-value=1.7e+02 Score=16.97 Aligned_cols=16 Identities=13% Similarity=0.359 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4519 14 SLCLPFMAISLPALTD 29 (236)
Q Consensus 14 a~~~s~l~~i~P~~~~ 29 (236)
|++-...+++||++.-
T Consensus 12 sI~VPlVglvfPai~M 27 (38)
T 1jb0_I 12 WIFIPVVCWLMPTVVM 27 (38)
T ss_dssp HHHHHHHHTHHHHHHH
T ss_pred hhhHhHHHHHHHHHHH
Confidence 5566777888888753
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=9.02 E-value=8.4e+02 Score=20.50 Aligned_cols=30 Identities=7% Similarity=-0.007 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy4519 5 LELFIALIGSLCLPFMAISLPALTDLITFWSS 36 (236)
Q Consensus 5 ~~~~isLvGa~~~s~l~~i~P~~~~~~~~~~~ 36 (236)
++.++++.+ ....+.+.++.+..++.++++
T Consensus 350 ~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 350 FGLVSSVSV--IFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp CHHHHHHHH--HHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 334444433 344566777777777766554
Done!