Query psy4519
Match_columns 236
No_of_seqs 231 out of 1659
Neff 7.5
Searched_HMMs 13730
Date Fri Aug 16 19:14:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4519.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4519hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90g_ f.23.26.1 (G:) PetG su 6.6 1.7E+02 0.012 14.5 2.2 16 145-160 7-22 (30)
2 d1q90r_ f.23.12.1 (R:) ISP sub 6.6 2.1E+02 0.015 15.3 2.7 19 11-29 17-35 (39)
3 d1sfea1 a.4.2.1 (A:93-176) Ada 6.3 1.9E+02 0.014 17.9 2.9 11 183-193 20-30 (84)
4 d1n1jb_ a.22.1.3 (B:) Nuclear 5.7 3E+02 0.022 16.1 5.3 35 159-194 30-64 (78)
5 d1jfia_ a.22.1.3 (A:) Negative 5.1 3.1E+02 0.023 15.6 4.9 32 159-191 32-63 (66)
6 d1oqca_ a.24.15.1 (A:) Augment 4.7 3.2E+02 0.023 17.3 3.5 25 168-192 78-102 (112)
7 d1mv8a2 c.2.1.6 (A:1-202) GDP- 4.7 72 0.0053 22.9 -0.2 14 129-142 4-17 (202)
8 d1jhfa1 a.4.5.2 (A:2-72) LexA 4.5 3.3E+02 0.024 15.8 3.2 15 178-193 20-34 (71)
9 d1dlja2 c.2.1.6 (A:1-196) UDP- 4.5 71 0.0052 22.6 -0.3 13 129-141 4-16 (196)
10 d3bpya1 a.4.5.14 (A:93-177) Af 4.2 3E+02 0.022 17.0 2.8 14 182-195 6-19 (85)
No 1
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.62 E-value=1.7e+02 Score=14.48 Aligned_cols=16 Identities=31% Similarity=0.654 Sum_probs=10.4
Q ss_pred cChhHHHHHHHHHHHH
Q psy4519 145 SGYLLGFLGTVAIGAF 160 (236)
Q Consensus 145 ~G~~~G~i~l~~~~~l 160 (236)
+|.++|++-+.+.+.+
T Consensus 7 ~GivlGlipiTl~Glf 22 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLF 22 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHH
Confidence 5667777766666644
No 2
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.60 E-value=2.1e+02 Score=15.27 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4519 11 LIGSLCLPFMAISLPALTD 29 (236)
Q Consensus 11 LvGa~~~s~l~~i~P~~~~ 29 (236)
++|+.....+++..|-+-.
T Consensus 17 l~G~~~~~~~g~l~py~~f 35 (39)
T d1q90r_ 17 LAGGAGLPITTLALGYGAF 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchhhhhhccceeEE
Confidence 4799999999999986643
No 3
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=6.34 E-value=1.9e+02 Score=17.91 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=9.4
Q ss_pred CCCHHHHHHHH
Q psy4519 183 SLTYPEILGAA 193 (236)
Q Consensus 183 ~~sY~di~~~~ 193 (236)
..||.|+++.+
T Consensus 20 v~TYg~iA~~~ 30 (84)
T d1sfea1 20 TVSYQQLANAI 30 (84)
T ss_dssp CEEHHHHHHHT
T ss_pred eeeHHHHHHHh
Confidence 46999999887
No 4
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.72 E-value=3e+02 Score=16.14 Aligned_cols=35 Identities=17% Similarity=0.047 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHh
Q psy4519 159 AFTTSCIQILVRAQYELCRRKRIPSLTYPEILGAAL 194 (236)
Q Consensus 159 ~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~~~~ 194 (236)
....+...+.-++. ...++.++...+|+|+.+..-
T Consensus 30 a~E~Fi~~l~~~A~-~~a~~~~rkti~~~dl~~av~ 64 (78)
T d1n1jb_ 30 AAQIFITELTLRAW-IHTEDNKRRTLQRNDIAMAIT 64 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-HHHHHcCCCcCCHHHHHHHHh
Confidence 33444444444443 333344445689999988753
No 5
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.07 E-value=3.1e+02 Score=15.58 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHH
Q psy4519 159 AFTTSCIQILVRAQYELCRRKRIPSLTYPEILG 191 (236)
Q Consensus 159 ~ls~yt~~lLv~~~~~~~~r~~~~~~sY~di~~ 191 (236)
..-++...++-++.+ ..++.++...+|.|+.+
T Consensus 32 a~E~Fi~~l~~~A~~-~a~~~krktI~~~dl~~ 63 (66)
T d1jfia_ 32 ALELFLESLLKKACQ-VTQSRNAKTMTTSHLKQ 63 (66)
T ss_dssp HHHHHHHHHHHHHHH-HHHTC---CBCHHHHHT
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCcCCHHHHHH
Confidence 444455555544443 33344445689999864
No 6
>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.70 E-value=3.2e+02 Score=17.33 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHH
Q psy4519 168 LVRAQYELCRRKRIPSLTYPEILGA 192 (236)
Q Consensus 168 Lv~~~~~~~~r~~~~~~sY~di~~~ 192 (236)
+.+....+.+|.+.|..+|+|+-+.
T Consensus 78 l~~~HN~VN~rlgKp~~~~~~~~~~ 102 (112)
T d1oqca_ 78 LCRLHNEVNRKLGKPDFDCSRVDER 102 (112)
T ss_dssp HHHHHHHHHHHTTCCCCCGGGHHHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 4455667777888888899887654
No 7
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.66 E-value=72 Score=22.89 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=11.0
Q ss_pred hhhhhhhhHHHHHH
Q psy4519 129 GALGTGILTMPHAF 142 (236)
Q Consensus 129 ~~iG~GiL~lP~af 142 (236)
+++|+|-+++|.|.
T Consensus 4 ~ViGlG~vGl~~a~ 17 (202)
T d1mv8a2 4 SIFGLGYVGAVCAG 17 (202)
T ss_dssp EEECCSTTHHHHHH
T ss_pred EEECCCHhHHHHHH
Confidence 46888988888764
No 8
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=4.52 E-value=3.3e+02 Score=15.78 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=11.0
Q ss_pred hcCCCCCCHHHHHHHH
Q psy4519 178 RKRIPSLTYPEILGAA 193 (236)
Q Consensus 178 r~~~~~~sY~di~~~~ 193 (236)
+++.| .||.||++..
T Consensus 20 ~~G~~-Ps~rei~~~~ 34 (71)
T d1jhfa1 20 QTGMP-PTRAEIAQRL 34 (71)
T ss_dssp HHSSC-CCHHHHHHHT
T ss_pred HhCCC-CCHHHHHHHc
Confidence 45554 6999999865
No 9
>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}
Probab=4.49 E-value=71 Score=22.61 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=9.2
Q ss_pred hhhhhhhhHHHHH
Q psy4519 129 GALGTGILTMPHA 141 (236)
Q Consensus 129 ~~iG~GiL~lP~a 141 (236)
+++|.|-+++|.|
T Consensus 4 ~ViGlG~vGl~~a 16 (196)
T d1dlja2 4 AVAGSGYVGLSLG 16 (196)
T ss_dssp EEECCSHHHHHHH
T ss_pred EEECCChhHHHHH
Confidence 4577777777765
No 10
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.21 E-value=3e+02 Score=16.95 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=6.6
Q ss_pred CCCCHHHHHHHHhh
Q psy4519 182 PSLTYPEILGAALS 195 (236)
Q Consensus 182 ~~~sY~di~~~~~~ 195 (236)
+..||.++...++.
T Consensus 6 ~~~SY~~LI~~Ai~ 19 (85)
T d3bpya1 6 GNQSYAELISQAIE 19 (85)
T ss_dssp BSCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 33455555444443
Done!