RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4519
(236 letters)
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein.
This transmembrane region is found in many amino acid
transporters including UNC-47 and MTR. UNC-47 encodes a
vesicular amino butyric acid (GABA) transporter, (VGAT).
UNC-47 is predicted to have 10 transmembrane domains.
MTR is a N system amino acid transporter system protein
involved in methyltryptophan resistance. Other members
of this family include proline transporters and amino
acid permeases.
Length = 406
Score = 58.8 bits (143), Expect = 4e-10
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 120 WDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRK 179
W A+ ++IK +G G+L++P+AFK G++ G + V +G + + +LV+ + + K
Sbjct: 6 WQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVDKVK 65
Query: 180 RIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236
+Y ++ +R P G+ L A++V+ G YL+F NL
Sbjct: 66 GKRRKSYGDLG----------YRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLP 112
Score = 34.9 bits (81), Expect = 0.028
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 2 IPNLELFIALIGSLCLPFMAISLPALTDLITFWSSHHGLSK-ALFITKHVVIFLIAVVGC 60
+P L F++L+G+ + LP L L + L K V+ +I ++
Sbjct: 338 VPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLM 397
Query: 61 YTGVQASVR 69
GV +
Sbjct: 398 AYGVAGLII 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 33.0 bits (76), Expect = 0.10
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 14/111 (12%)
Query: 126 MIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLT 185
+ A+G G+L +P AF G+ G L + T + +L+ A +
Sbjct: 18 LAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEA----LLSSPNGKAS 73
Query: 186 YPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGALCVYLLFIASNLS 236
++ L G L + G L Y++ I + L+
Sbjct: 74 ITSLVEDYLG----------KKGGILIGLSYFFALYGLLVAYIVGIGNLLA 114
>gnl|CDD|227000 COG4653, COG4653, Predicted phage phi-C31 gp36 major capsid-like
protein [General function prediction only].
Length = 422
Score = 29.8 bits (67), Expect = 1.2
Identities = 30/133 (22%), Positives = 46/133 (34%), Gaps = 32/133 (24%)
Query: 97 EIAETALSEGPPSV-----RWLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLL-- 149
E A+ A EGPP+ R LA G + A TG+ D GY +
Sbjct: 90 ETADPACREGPPAFNSYIQRGLAATGALLEL------KAFSTGVPP------DGGYTVPT 137
Query: 150 GFLGTVAIGAFTTSCIQILVRAQYELCRRKRIPSLTYPEIL---GAA---LSEGPARFRW 203
+ S ++ + + + + + GA + EG AR +
Sbjct: 138 ELEAEIWRELAAVSTMR-------RIMTVLTTSAAEFKKPVSLGGATTNWVGEGAARPQT 190
Query: 204 LAPYGRGLSFTAM 216
P RG+SF M
Sbjct: 191 TTPQLRGVSFEGM 203
>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family
of carbohydrate kinases. This subfamily includes
glycerol kinases (GK; EC 2.7.1.30) and glycerol
kinase-like proteins from all three kingdoms of living
organisms. Glycerol is an important intermediate of
energy metabolism and it plays fundamental roles in
several vital physiological processes. GKs are involved
in the entry of external glycerol into cellular
metabolism. They catalyze the rate-limiting step in
glycerol metabolism by transferring a phosphate from ATP
to glycerol thus producing glycerol 3-phosphate (G3P) in
the cytoplasm. Human GK deficiency, called
hyperglycerolemia, is an X-linked recessive trait
associated with psychomotor retardation, osteoporosis,
spasticity, esotropia, and bone fractures. Under
different conditions, GKs from different species may
exist in different oligomeric states. The monomer of GKs
is composed of two large domains separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain. The high affinity ATP binding site of GKs is
created only by a substrate-induced conformational
change. Based on sequence similarity, some GK-like
proteins from metazoa, which have lost their GK
enzymatic activity, are also included in this CD.
Members in this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 484
Score = 28.7 bits (65), Expect = 3.0
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 174 ELCRRKRIPSLTYPEILGAALSEGPARFRWLAPYGRGLSFTAMIVDEIGAL 224
EL IPS PEI ++ G L G G+ + D+ AL
Sbjct: 198 ELLELFGIPSECLPEIRSSSEVYGYTNEGGL--LGEGIPIAGCLGDQQAAL 246
>gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional.
Length = 381
Score = 27.8 bits (62), Expect = 5.9
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 121 DALS---HMIKGALGTGIL----------TMPHAFKDSGYLLGFLGTVAIGAFTTSCIQI 167
D+LS H I G G G + P + G+ G + I AF T+ I
Sbjct: 192 DSLSVSAHKIYGPKGVGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENI 251
Query: 168 LVRAQYELCRRKRI 181
L Q E R K +
Sbjct: 252 LKNMQEESLRFKEL 265
>gnl|CDD|115050 pfam06368, Met_asp_mut_E, Methylaspartate mutase E chain (MutE).
This family consists of several methylaspartate mutase E
chain proteins (EC:5.4.99.1). Glutamate mutase catalyzes
the first step in the fermentation of glutamate by
Clostridium tetanomorphum. This is an unusual
isomerisation in which L-glutamate is converted to
threo-beta-methyl L-aspartate.
Length = 441
Score = 27.8 bits (62), Expect = 6.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 4 NLELFIALIGSLCLPFMAISLPALTDLI 31
N E F L G+L P M+ ++ L L+
Sbjct: 171 NREPFGPLTGTLVPPSMSNAVSILEGLL 198
>gnl|CDD|222234 pfam13575, DUF4135, Domain of unknown function (DUF4135). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and archaea, and is
approximately 380 amino acids in length. The family is
found in association with pfam05147. This domain may be
involved in synthesis of a lantibiotic compound.
Length = 369
Score = 27.6 bits (62), Expect = 6.5
Identities = 14/56 (25%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 99 AETALSEGPPSVRWLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGT 154
ET V L G DA + L TG+L G + LG
Sbjct: 170 LETLFH----PVLKLDDEGATADAAEALRDSVLRTGLLPSWFWGGGEGIDISGLGG 221
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional.
Length = 473
Score = 27.4 bits (61), Expect = 6.7
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 117 GRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTV---AIGAFTTSCIQILV---R 170
G +DA + +LT+P++F G L G L + +G++T I +L R
Sbjct: 46 GSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYR 105
Query: 171 AQYELCRRK---RIPSLTYPEILGAALSEGPARFRWLAPYGR--GLSFTAMIVDEIGALC 225
A+ E R K + + + E+L L PY + GL+F C
Sbjct: 106 ARKE--REKVDFKNHVIQWFEVLDGL----------LGPYWKNVGLAFN----------C 143
Query: 226 VYLLFIA 232
+LLF +
Sbjct: 144 TFLLFGS 150
>gnl|CDD|223068 PHA03384, PHA03384, early DNA-binding protein E2A; Provisional.
Length = 445
Score = 27.4 bits (61), Expect = 8.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 74 EVFKVVAQYVLCKKKKIPSLTY 95
E FK + Q L ++ + LT+
Sbjct: 131 ECFKKICQTWLNEEHRGIPLTF 152
>gnl|CDD|226280 COG3757, Acm, Lyzozyme M1 (1,4-beta-N-acetylmuramidase) [Cell
envelope biogenesis, outer membrane].
Length = 269
Score = 27.0 bits (60), Expect = 9.0
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 112 WLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFLGTVAIGAF 160
W+A Y + ++ + + G + G G V + F
Sbjct: 212 WIASYATDHPSEPYVGLSWVF-------WQYSSQGSIPGVNGDVDLNVF 253
>gnl|CDD|237434 PRK13578, PRK13578, ornithine decarboxylase; Provisional.
Length = 720
Score = 27.2 bits (61), Expect = 9.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 217 IVDEIGALCVYLLF 230
+VD+IG LC Y+LF
Sbjct: 303 VVDKIGHLCDYILF 316
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.142 0.439
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,558,094
Number of extensions: 1232310
Number of successful extensions: 1496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1491
Number of HSP's successfully gapped: 44
Length of query: 236
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 142
Effective length of database: 6,768,326
Effective search space: 961102292
Effective search space used: 961102292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.7 bits)