RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4519
(236 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 5e-04
Identities = 30/169 (17%), Positives = 60/169 (35%), Gaps = 42/169 (24%)
Query: 23 SLPALTDLITFWSSHH-----GLSKALFITKHVVIFLIAVVGCYTGVQASVREILI---- 73
L L ++ ++ K L T+ + + T S+ +
Sbjct: 246 CLLVLLNV---QNAKAWNAFNLSCKILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTP 300
Query: 74 -EVFKVVAQYVLCKKKKIPS---LTYPE----IAETALSEGPPSVRWLAPYGRYW----- 120
EV ++ +Y+ C+ + +P T P IAE ++ +G W W
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE-SIRDGL--ATW-----DNWKHVNC 352
Query: 121 DALSHMIKGALGTGILTMPHAFKDSGYLLG-FLGTVAIGAFTTSCIQIL 168
D L+ +I+ +L +L P ++ L F + I T + ++
Sbjct: 353 DKLTTIIESSL--NVLE-PAEYRKMFDRLSVFPPSAHI---PTILLSLI 395
Score = 29.4 bits (65), Expect = 1.1
Identities = 39/243 (16%), Positives = 62/243 (25%), Gaps = 113/243 (46%)
Query: 67 SVREILIEVFKVVAQYVLCKKKKIPSLTYPEIAETALSEGPPSVR------------WLA 114
R+ L +V A+Y + + + L AL E P+ W+A
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLR------QALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 115 -------------PYGRYW----------------DALSHMIKGALGTGILTMPHA---- 141
+ +W L + I + +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 142 ----------FKDSGY---LLGFLGTV----AIGAFTTSCIQILV--R------------ 170
K Y LL L V A AF SC +IL+ R
Sbjct: 228 HSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAAT 285
Query: 171 ----------------------AQYELCRRKRIPS---LTYP---EILGAALSEGPARF- 201
+Y CR + +P T P I+ ++ +G A +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 202 RWL 204
W
Sbjct: 346 NWK 348
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint
center for structural genomics, JCSG; HET: EPE; 2.40A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 482
Score = 30.0 bits (68), Expect = 0.72
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 117 GRY------WDALSHMIKGALGTGILTMPHAFKDSGYLLGFLG 153
G S + L + T+ F +SGY G
Sbjct: 75 GMMPHQTNVRSNSSEPVNTRLPENVPTLGSLFSESGYEAVHFG 117
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 2.1
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 89 KIPSLTYPEIAETALSEGPPSVRWLAPYGRYWDALSHM 126
++P + V L +WDA+S +
Sbjct: 177 ELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKL 214
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 27.8 bits (62), Expect = 3.2
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 101 TALSEGPPSVRWLAPYGRYWDALSHMIKGALGTGILTMPHA-FKDSG 146
A + PP++ WL+P A S+ G L + +A +D+G
Sbjct: 408 RADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNG 454
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 27.0 bits (59), Expect = 6.6
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 108 PSVRWLAPYGRYWDALSHMIKGALGTGILTMPHAFKDSGYLLGFL 152
P G +W + S + G + + F + G +L +
Sbjct: 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVI 275
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal,
PSI, MCSG, structural genomics, midwest center
structural genomics; 1.40A {Staphylococcus epidermidis}
Length = 107
Score = 25.4 bits (56), Expect = 8.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 77 KVVAQYVLCKKKKIPSLTYPEIAETA 102
K +AQ++L K+ ++T EIA
Sbjct: 20 KKIAQFILNYPHKVVNMTSQEIANQL 45
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.8 bits (59), Expect = 8.5
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 97 EIAETALSEGPPSVRWLAPYGRYWDALSHMIKGALGTGILT----MPHAFKDSGYLL 149
A+ AL G P +A D A G GILT + K + L
Sbjct: 1189 MQADLALKMGVPIYGIVAMAATATDK-IGRSVPAPGKGILTTAREHHSSVKYASPNL 1244
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function;
2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Length = 268
Score = 26.4 bits (59), Expect = 8.7
Identities = 4/32 (12%), Positives = 8/32 (25%)
Query: 176 CRRKRIPSLTYPEILGAALSEGPARFRWLAPY 207
R +P + L + + Y
Sbjct: 145 SYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAY 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.439
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,771,809
Number of extensions: 225434
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 16
Length of query: 236
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 145
Effective length of database: 4,160,982
Effective search space: 603342390
Effective search space used: 603342390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.8 bits)