BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4520
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FVU|A Chain A, Crystal Structure Of Botrocetin
pdb|1FVU|C Chain C, Crystal Structure Of Botrocetin
pdb|1IJK|B Chain B, The Von Willebrand Factor Mutant (I546v) A1 Domain-
Botrocetin Complex
pdb|1U0N|B Chain B, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
pdb|1U0O|A Chain A, The Mouse Von Willebrand Factor A1-Botrocetin Complex
Length = 133
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 234 PGSTATYNGKCYIFYNRRPMNLRDSLAFC--RSRGGSLV 270
P ++Y G CY F+ ++ MN D+ FC +++GG LV
Sbjct: 3 PSGWSSYEGNCYKFFQQK-MNWADAERFCSEQAKGGHLV 40
>pdb|2A7W|A Chain A, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|B Chain B, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|C Chain C, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|D Chain D, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|E Chain E, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|F Chain F, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|G Chain G, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|H Chain H, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|I Chain I, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|J Chain J, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|K Chain K, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|L Chain L, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
Length = 116
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 42 DNLDKFDEYSD-WFKTLPMYFLTFHGPQPLKLVMELVRKPLLDNLDK 87
D L E +D WF T LT+HG +P +V EL R+ + LD+
Sbjct: 56 DKLHLVREVADLWFHT--XVLLTYHGLRPEDVVXELHRREGISGLDE 100
>pdb|1J4B|A Chain A, Recombinant Mouse-muscle Adenylosuccinate Synthetase
pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1IWE|B Chain B, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1LNY|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LNY|B Chain B, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LON|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With
6-Phosphoryl-Imp, Gdp And Hadacidin
pdb|1LOO|A Chain A, Crystal Structure Of The Mouse-Muscle Adenylosuccinate
Synthetase Ligated With Gtp
pdb|1MEZ|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Samp, Gdp, So4(2-), And Mg(2+)
pdb|1MF0|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp, Gdp, Hpo4(2-), And Mg(2+)
pdb|1MF1|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp
pdb|2DGN|A Chain A, Mouse Muscle Adenylosuccinate Synthetase Partially Ligated
Complex With Gtp, 2'-Deoxy-Imp
Length = 457
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 40 LLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLLDNLDKFDEYSDWFKTLP 99
+ D L FDE+S FK L H Q + +E+ + L L F E
Sbjct: 182 ICDLLSDFDEFSARFKNLA------HQHQSMFPTLEIDVEGQLKRLKGFAERIRPMVRDG 235
Query: 100 MYFL--TFHGPQPLKLVMEAVEHAMYVYDTG 128
+YF+ HGP P K+++E A+ D G
Sbjct: 236 VYFMYEALHGP-PKKVLVEGANAALLDIDFG 265
>pdb|1ST6|A Chain A, Crystal Structure Of A Cytoskeletal Protein
Length = 1069
Score = 28.1 bits (61), Expect = 5.8, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 132 IDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV-IHPRKENEQLTVNSVFG 190
IDNV+ M GL D A+D + D + + + C V + + P+ V G
Sbjct: 706 IDNVEKMTGLVDEAIDTKSLLDASEEAIKKDLDK--CKVAMANMQPQM--------LVAG 755
Query: 191 SAKATQESDNVLIIQQKFNQNLELKKFLQAL 221
+ + ++ +L++ ++ +N E KF +A+
Sbjct: 756 ATSIARRANRILLVAKREVENSEDPKFREAV 786
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,675,033
Number of Sequences: 62578
Number of extensions: 346920
Number of successful extensions: 677
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 6
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)