BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4520
(291 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96RR1|PEO1_HUMAN Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1
Length = 684
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 132/221 (59%), Gaps = 43/221 (19%)
Query: 1 MSEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMY 60
+SEY+LDL QGV TLWGSFE+ N RLAR+ML Q L D L
Sbjct: 425 ISEYALDLCSQGVNTLWGSFEISNVRLARVMLTQFAEGRLEDQL---------------- 468
Query: 61 FLTFHGPQPLKLVMELVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEH 120
DK+D ++D F+ LP+YF+TFHG Q ++ V++ ++H
Sbjct: 469 -------------------------DKYDHWADRFEDLPLYFMTFHGQQSIRTVIDTMQH 503
Query: 121 AMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN 180
A+YVYD HVIIDN+QFM+G + DR QD II FR FA+ ++CHVTLVIHPRKE+
Sbjct: 504 AVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCHVTLVIHPRKED 563
Query: 181 E--QLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQ 219
+ +L S+FGSAKA+QE+DNVLI+Q + K++LQ
Sbjct: 564 DDKELQTASIFGSAKASQEADNVLILQDRKLVTGPGKRYLQ 604
>sp|Q8CIW5|PEO1_MOUSE Twinkle protein, mitochondrial OS=Mus musculus GN=Peo1 PE=2 SV=1
Length = 685
Score = 184 bits (467), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 134/221 (60%), Gaps = 43/221 (19%)
Query: 1 MSEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMY 60
+SEY+LDL QGV TLWGSFE+ N RLAR+ML Q + + +E
Sbjct: 426 ISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQFA-------VTRLEE----------- 467
Query: 61 FLTFHGPQPLKLVMELVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEH 120
LDK++E++D F+ LP+YF+TFHG Q ++ V++ ++H
Sbjct: 468 -----------------------QLDKYEEWADRFEDLPLYFMTFHGQQSIRSVIDTMQH 504
Query: 121 AMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN 180
A+YVYD HV+IDN+QFM+G + DR QD I+ FR FA+ + CHVTLVIHPRKE+
Sbjct: 505 AVYVYDVCHVVIDNLQFMMGHEQLSSDRIAAQDYIVGAFRKFATDNSCHVTLVIHPRKED 564
Query: 181 E--QLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQ 219
+ +L S+FGSAKA+QE+DNVLI+Q + K++LQ
Sbjct: 565 DDKELQTASIFGSAKASQEADNVLILQDRKLVTGPGKRYLQ 605
>sp|Q5ZIW1|PEO1_CHICK Twinkle protein, mitochondrial OS=Gallus gallus GN=PEO1 PE=2 SV=1
Length = 669
Score = 182 bits (462), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 134/221 (60%), Gaps = 43/221 (19%)
Query: 1 MSEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMY 60
+SEY+LDL QGV TLWGSFE+ N RLA+IML Q F T
Sbjct: 431 ISEYALDLCTQGVCTLWGSFEINNIRLAKIMLTQ-------------------FAT---- 467
Query: 61 FLTFHGPQPLKLVMELVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEH 120
+ L D L+ +DE++D F+ LP+YF+TFHG Q +K V++ ++H
Sbjct: 468 ------------------RRLEDQLELYDEWADRFEDLPLYFMTFHGQQNIKTVLDTMQH 509
Query: 121 AMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN 180
A+Y+YD HV++DN+QFM+G + DR QD I+ FR FA+ + CH+TLVIHPRKE+
Sbjct: 510 AVYMYDITHVVVDNLQFMMGHEQLSADRLAAQDFIVGAFRKFATDNTCHITLVIHPRKED 569
Query: 181 E--QLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQ 219
+ +L S+FGSAKA+QE+DNVLI+Q + K++LQ
Sbjct: 570 DEKELQTASIFGSAKASQEADNVLILQDRKLTTGPGKRYLQ 610
>sp|Q7P0E6|HIS2_CHRVO Phosphoribosyl-ATP pyrophosphatase OS=Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
NCIMB 9131 / NCTC 9757) GN=hisE PE=1 SV=1
Length = 108
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 25 KRLARIMLQQLVRKPLLDNLDKFDEYSD-WFKTLPMYFLTFHGPQPLKLVMELVRKPLLD 83
K++A + L+ D L E +D WF T M LT+HG +P +VMEL R+ +
Sbjct: 39 KKVAEEAAETLMASKDKDKLHLVREVADLWFHT--MVLLTYHGLRPEDVVMELHRREGIS 96
Query: 84 NLDK 87
LD+
Sbjct: 97 GLDE 100
>sp|Q8R0Z6|ANGL6_MOUSE Angiopoietin-related protein 6 OS=Mus musculus GN=Angptl6 PE=2 SV=1
Length = 457
Score = 34.7 bits (78), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 159 FRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFL 218
+RA + C VTLV+ P+K ++V S++ATQ+S+ + ++ + ++ EL + L
Sbjct: 18 WRALGGAARCRVTLVLSPQK-----ATSAVCRSSEATQDSE-LATLRMRLGRHEELLRAL 71
Query: 219 QALPIE 224
Q E
Sbjct: 72 QRRAAE 77
>sp|Q6DIM3|TBD_XENTR Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1
Length = 451
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 18/89 (20%)
Query: 65 HGPQPLKLVMELVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHG-----------PQPLKL 113
HGP+ +VM+LVRK ++K D +F + M T G P L
Sbjct: 111 HGPKHQDIVMDLVRK----QVEKCDRLGGFFTIMSMAGGTGSGMGTFLTRCLRDAYPDSL 166
Query: 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLS 142
++ V ++ Y TG VI+ N +L LS
Sbjct: 167 LLNQV---IWPYGTGEVIVQNYNSILTLS 192
>sp|P11327|VL2_PAPVE Minor capsid protein L2 OS=European elk papillomavirus GN=L2 PE=3
SV=1
Length = 477
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 15/124 (12%)
Query: 102 FLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFR- 160
F T H P+ ++L+ +E D V+ + G D LD ++ E
Sbjct: 342 FSTIHSPETIELIPTVLE------DDTEVLTGVPERDTGFDDVDLDSIASDSPLLPERHH 395
Query: 161 -AFASRSHCHVTLVIHPRKEN------EQLTVNSVFGSAKATQESDNVLIIQQKFNQNLE 213
AF +R H+ +V P + Q+ NSV+ S QES + N N+
Sbjct: 396 LAFGAR-RSHIPIVARPGVQTGTVIDTRQMAENSVYVSDNGGQESQQTPTVVINGNINVS 454
Query: 214 LKKF 217
++ F
Sbjct: 455 MEYF 458
>sp|P22029|LECBA_BOTJA Snaclec botrocetin subunit alpha OS=Bothrops jararaca PE=1 SV=2
Length = 133
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 234 PGSTATYNGKCYIFYNRRPMNLRDSLAFC--RSRGGSLV 270
P ++Y G CY F+ ++ MN D+ FC +++GG LV
Sbjct: 3 PSGWSSYEGNCYKFFQQK-MNWADAERFCSEQAKGGHLV 40
>sp|B9X287|C7346_ORYSJ Cytochrome P450 734A6 OS=Oryza sativa subsp. japonica GN=CYP734A6
PE=2 SV=1
Length = 542
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 50 YSDWFKTLPMYFLTFHGPQPLKLVM--ELVRKPLLDNLDKFDEY 91
Y W K FL + GP P + EL+R+ LL D+FD Y
Sbjct: 85 YHHWKKIYGSTFLIWFGPTPRLAIADPELIREVLLARADRFDRY 128
>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa
subsp. japonica GN=Os06g0520600 PE=2 SV=1
Length = 711
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 183 LTVNSVFGSAKATQESDNVLIIQQKFN-QNLE--LKKFLQALPIERCPQFRDQPPGSTAT 239
+ VN++ G K++ S++V + ++ N QN E L+K +P + ++ G+ +
Sbjct: 573 ICVNAMIGGNKSSIASNDVEMTRKNVNRQNEEAILQKSYDEVPNNKMDPQKNYADGAIS- 631
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDE 272
Y+ +P NL S+ C RGG + E
Sbjct: 632 -----YLIEKEKPTNLESSVRIC--RGGCSISE 657
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,574,161
Number of Sequences: 539616
Number of extensions: 4404774
Number of successful extensions: 10342
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 10324
Number of HSP's gapped (non-prelim): 27
length of query: 291
length of database: 191,569,459
effective HSP length: 116
effective length of query: 175
effective length of database: 128,974,003
effective search space: 22570450525
effective search space used: 22570450525
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)