Query psy4520
Match_columns 291
No_of_seqs 151 out of 733
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 19:16:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0305 DnaB Replicative DNA h 100.0 1.1E-46 2.5E-51 368.6 18.4 205 3-250 215-433 (435)
2 PRK08006 replicative DNA helic 100.0 7.7E-46 1.7E-50 367.7 20.6 212 3-257 243-470 (471)
3 PRK08840 replicative DNA helic 100.0 9.1E-46 2E-50 366.6 20.6 212 3-257 236-463 (464)
4 PRK07004 replicative DNA helic 100.0 2.4E-45 5.3E-50 363.1 20.0 206 3-251 232-452 (460)
5 PRK06749 replicative DNA helic 100.0 5.4E-45 1.2E-49 357.9 20.5 206 2-249 204-426 (428)
6 PRK05636 replicative DNA helic 100.0 6.8E-45 1.5E-49 363.5 20.4 207 3-252 284-504 (505)
7 PRK06321 replicative DNA helic 100.0 8.3E-45 1.8E-49 360.4 19.7 209 2-252 244-467 (472)
8 PRK06904 replicative DNA helic 100.0 6.5E-44 1.4E-48 354.0 20.5 205 3-250 240-462 (472)
9 PRK08760 replicative DNA helic 100.0 6.7E-44 1.4E-48 354.2 20.2 207 3-252 248-469 (476)
10 PRK08506 replicative DNA helic 100.0 1.3E-43 2.7E-48 351.9 20.4 209 2-253 210-454 (472)
11 PRK05595 replicative DNA helic 100.0 2.2E-43 4.7E-48 347.1 20.2 206 2-250 219-438 (444)
12 PRK09165 replicative DNA helic 100.0 4E-43 8.6E-48 350.3 20.0 199 12-252 260-489 (497)
13 PHA02542 41 41 helicase; Provi 100.0 1E-41 2.2E-46 338.5 20.8 208 2-250 208-428 (473)
14 PRK05748 replicative DNA helic 100.0 9.8E-42 2.1E-46 335.3 20.3 208 2-251 221-443 (448)
15 KOG2373|consensus 100.0 1.4E-42 3E-47 329.5 9.8 197 1-243 290-489 (514)
16 TIGR03600 phage_DnaB phage rep 100.0 1.1E-40 2.3E-45 325.0 20.1 194 3-240 213-421 (421)
17 TIGR00665 DnaB replicative DNA 100.0 4.1E-40 8.8E-45 321.5 20.9 207 2-251 213-433 (434)
18 PF03796 DnaB_C: DnaB-like hel 100.0 8.2E-40 1.8E-44 298.9 15.5 207 2-251 37-258 (259)
19 cd00984 DnaB_C DnaB helicase C 100.0 6.1E-33 1.3E-37 249.0 19.7 198 2-242 31-242 (242)
20 cd01122 GP4d_helicase GP4d_hel 100.0 1.1E-29 2.3E-34 232.2 21.9 210 2-256 48-269 (271)
21 PRK07773 replicative DNA helic 100.0 7.7E-29 1.7E-33 262.1 16.1 163 3-202 236-407 (886)
22 PRK05973 replicative DNA helic 99.7 4.3E-17 9.4E-22 149.6 12.4 139 3-209 83-226 (237)
23 TIGR03878 thermo_KaiC_2 KaiC d 99.4 2.2E-11 4.8E-16 112.5 16.9 165 2-224 54-233 (259)
24 PF13481 AAA_25: AAA domain; P 99.3 6.4E-12 1.4E-16 108.8 9.5 131 2-179 50-191 (193)
25 cd01121 Sms Sms (bacterial rad 99.3 1.8E-10 3.8E-15 112.2 18.0 154 2-236 100-254 (372)
26 cd01124 KaiC KaiC is a circadi 99.2 6.3E-10 1.4E-14 95.5 15.8 158 2-224 17-181 (187)
27 PRK11823 DNA repair protein Ra 99.2 8.6E-10 1.9E-14 109.6 18.0 154 2-236 98-252 (446)
28 TIGR03881 KaiC_arch_4 KaiC dom 99.2 1.9E-09 4.2E-14 96.4 17.4 166 3-224 39-206 (229)
29 cd01125 repA Hexameric Replica 99.1 1.4E-09 3.1E-14 98.5 15.5 152 11-209 40-193 (239)
30 TIGR03880 KaiC_arch_3 KaiC dom 99.1 1.7E-09 3.7E-14 96.7 15.3 159 3-224 35-197 (224)
31 TIGR03877 thermo_KaiC_1 KaiC d 99.1 1.5E-09 3.1E-14 98.7 15.0 172 3-224 40-211 (237)
32 TIGR00416 sms DNA repair prote 99.1 2.3E-09 5E-14 106.9 17.6 154 2-236 112-266 (454)
33 PRK09361 radB DNA repair and r 99.1 7.1E-09 1.5E-13 92.7 15.8 94 125-224 106-204 (225)
34 cd01120 RecA-like_NTPases RecA 99.0 5.5E-09 1.2E-13 85.9 12.6 96 109-206 68-165 (165)
35 cd01393 recA_like RecA is a b 99.0 2.5E-08 5.4E-13 88.7 16.8 125 100-236 88-223 (226)
36 cd01394 radB RadB. The archaea 98.9 1.5E-07 3.3E-12 83.6 16.4 94 125-224 102-200 (218)
37 PRK04328 hypothetical protein; 98.8 2.3E-07 5E-12 85.3 17.5 172 3-224 42-213 (249)
38 PRK09302 circadian clock prote 98.8 2.5E-07 5.3E-12 93.0 16.4 169 2-224 49-218 (509)
39 TIGR02237 recomb_radB DNA repa 98.8 4.8E-07 1E-11 79.7 16.2 104 114-224 85-191 (209)
40 PF06745 KaiC: KaiC; InterPro 98.7 1.2E-07 2.6E-12 84.8 12.1 158 2-224 37-202 (226)
41 TIGR02655 circ_KaiC circadian 98.7 5.3E-07 1.2E-11 90.4 15.8 160 2-224 281-441 (484)
42 COG1066 Sms Predicted ATP-depe 98.6 2.2E-06 4.9E-11 84.5 16.4 158 2-241 111-269 (456)
43 PRK09302 circadian clock prote 98.6 2.1E-06 4.5E-11 86.3 16.2 158 2-224 291-451 (509)
44 cd01123 Rad51_DMC1_radA Rad51_ 98.4 9.9E-06 2.1E-10 72.4 14.7 120 100-224 88-218 (235)
45 PRK07773 replicative DNA helic 98.3 3.7E-07 8E-12 97.8 4.8 60 186-251 820-884 (886)
46 PRK04301 radA DNA repair and r 98.2 4.7E-05 1E-09 72.3 15.9 112 113-236 184-304 (317)
47 PRK06067 flagellar accessory p 98.1 9.9E-05 2.2E-09 66.5 13.9 161 2-224 43-204 (234)
48 TIGR02236 recomb_radA DNA repa 98.0 0.00015 3.3E-09 68.3 15.0 109 116-236 180-298 (310)
49 TIGR02239 recomb_RAD51 DNA rep 98.0 0.00029 6.3E-09 67.4 15.4 105 122-236 187-301 (316)
50 TIGR02655 circ_KaiC circadian 97.9 0.00032 6.9E-09 70.6 16.1 168 3-224 40-208 (484)
51 PLN03186 DNA repair protein RA 97.9 0.00031 6.8E-09 68.1 15.2 104 122-236 214-327 (342)
52 TIGR02238 recomb_DMC1 meiotic 97.9 0.00055 1.2E-08 65.5 15.9 100 121-224 186-294 (313)
53 cd00983 recA RecA is a bacter 97.8 0.001 2.2E-08 64.2 16.7 122 110-237 117-253 (325)
54 PLN03187 meiotic recombination 97.8 0.0013 2.7E-08 64.0 17.1 99 120-224 215-323 (344)
55 PRK08533 flagellar accessory p 97.8 0.0027 5.8E-08 57.9 18.0 157 3-224 43-202 (230)
56 TIGR02012 tigrfam_recA protein 97.8 0.00068 1.5E-08 65.3 14.6 114 110-225 117-247 (321)
57 PRK09354 recA recombinase A; P 97.6 0.0037 8E-08 60.9 16.3 113 110-224 122-251 (349)
58 PF08423 Rad51: Rad51; InterP 97.5 0.0032 7E-08 58.4 14.1 117 100-224 107-236 (256)
59 PTZ00035 Rad51 protein; Provis 97.4 0.0081 1.8E-07 58.1 15.8 104 123-236 210-322 (337)
60 COG0467 RAD55 RecA-superfamily 97.3 0.005 1.1E-07 56.5 12.9 171 2-224 41-211 (260)
61 COG3598 RepA RecA-family ATPas 97.1 0.0073 1.6E-07 58.7 12.0 64 114-180 182-245 (402)
62 PF00154 RecA: recA bacterial 96.6 0.073 1.6E-06 51.5 14.7 118 110-229 115-249 (322)
63 PRK09519 recA DNA recombinatio 96.3 0.037 7.9E-07 59.3 11.8 69 110-178 122-198 (790)
64 PF05621 TniB: Bacterial TniB 96.1 0.026 5.6E-07 54.1 8.2 59 109-173 128-186 (302)
65 COG2874 FlaH Predicted ATPases 94.8 0.29 6.2E-06 45.3 10.0 161 2-223 46-206 (235)
66 PF13479 AAA_24: AAA domain 94.7 0.25 5.4E-06 44.3 9.5 97 110-207 51-175 (213)
67 PF07088 GvpD: GvpD gas vesicl 93.9 0.31 6.7E-06 48.8 8.9 104 109-224 89-192 (484)
68 PF13401 AAA_22: AAA domain; P 93.3 0.23 4.9E-06 39.7 5.8 56 109-176 70-125 (131)
69 PRK04296 thymidine kinase; Pro 89.1 1.5 3.1E-05 38.6 7.0 78 110-206 64-141 (190)
70 PRK04208 rbcL ribulose bisopho 86.5 8 0.00017 39.4 11.2 71 86-172 216-286 (468)
71 COG0468 RecA RecA/RadA recombi 86.0 2.2 4.7E-05 40.6 6.5 75 100-177 116-196 (279)
72 KOG1434|consensus 85.8 5.7 0.00012 38.0 9.1 57 123-179 207-269 (335)
73 cd08213 RuBisCO_large_III Ribu 85.7 7.5 0.00016 39.0 10.4 70 86-172 187-256 (412)
74 COG1435 Tdk Thymidine kinase [ 85.2 2 4.4E-05 39.1 5.6 53 110-175 66-118 (201)
75 TIGR03326 rubisco_III ribulose 84.8 8.5 0.00018 38.6 10.4 70 86-172 200-269 (412)
76 COG1131 CcmA ABC-type multidru 84.8 6.3 0.00014 37.2 9.1 65 122-208 150-214 (293)
77 cd08206 RuBisCO_large_I_II_III 83.2 12 0.00026 37.6 10.7 70 86-171 188-257 (414)
78 PF09807 DUF2348: Uncharacteri 82.9 18 0.0004 33.5 11.1 89 110-206 116-210 (249)
79 CHL00040 rbcL ribulose-1,5-bis 82.4 17 0.00037 37.2 11.5 70 86-171 223-292 (475)
80 cd08212 RuBisCO_large_I Ribulo 82.2 16 0.00034 37.2 11.1 70 86-172 201-270 (450)
81 cd03261 ABC_Org_Solvent_Resist 82.0 13 0.00028 33.2 9.5 62 123-206 151-212 (235)
82 PF00016 RuBisCO_large: Ribulo 81.8 8.3 0.00018 37.2 8.6 71 86-172 70-140 (309)
83 PF07302 AroM: AroM protein; 81.3 10 0.00022 35.0 8.6 59 97-173 150-208 (221)
84 cd03593 CLECT_NK_receptors_lik 79.8 1.7 3.7E-05 34.0 2.8 45 237-282 5-49 (116)
85 KOG1564|consensus 79.8 6.1 0.00013 38.3 6.8 73 100-175 180-261 (351)
86 cd03297 ABC_ModC_molybdenum_tr 79.6 15 0.00032 32.3 9.0 61 124-206 147-207 (214)
87 TIGR03864 PQQ_ABC_ATP ABC tran 79.4 22 0.00048 31.7 10.2 60 124-206 148-207 (236)
88 PF13167 GTP-bdg_N: GTP-bindin 79.0 3.9 8.5E-05 32.8 4.6 51 152-205 6-65 (95)
89 cd03301 ABC_MalK_N The N-termi 78.9 15 0.00033 32.0 8.8 69 114-206 138-206 (213)
90 PRK11308 dppF dipeptide transp 78.2 16 0.00036 34.9 9.4 72 113-208 161-232 (327)
91 cd03265 ABC_DrrA DrrA is the A 78.0 16 0.00036 32.2 8.8 62 123-206 146-207 (220)
92 cd03258 ABC_MetN_methionine_tr 77.9 19 0.00042 31.9 9.3 62 123-206 155-216 (233)
93 PRK10575 iron-hydroxamate tran 77.8 18 0.00039 33.1 9.3 62 123-206 162-223 (265)
94 TIGR02315 ABC_phnC phosphonate 77.6 23 0.00049 31.6 9.7 69 114-206 153-221 (243)
95 cd08208 RLP_Photo Ribulose bis 77.5 28 0.00061 35.1 11.1 47 86-135 216-262 (424)
96 cd03275 ABC_SMC1_euk Eukaryoti 77.4 12 0.00027 33.9 8.0 73 113-209 162-236 (247)
97 cd03256 ABC_PhnC_transporter A 77.3 24 0.00052 31.4 9.8 68 115-206 153-220 (241)
98 PRK09549 mtnW 2,3-diketo-5-met 77.3 31 0.00066 34.7 11.3 47 86-135 190-236 (407)
99 PF04748 Polysacc_deac_2: Dive 77.3 5.5 0.00012 36.2 5.6 116 22-179 71-186 (213)
100 PRK10584 putative ABC transpor 77.2 23 0.00049 31.4 9.5 68 114-206 154-221 (228)
101 cd08209 RLP_DK-MTP-1-P-enolase 77.0 34 0.00073 34.2 11.4 47 86-135 180-226 (391)
102 cd03299 ABC_ModC_like Archeal 75.8 21 0.00046 31.9 9.0 62 123-206 144-205 (235)
103 cd08207 RLP_NonPhot Ribulose b 75.8 37 0.0008 34.1 11.4 47 86-135 199-245 (406)
104 cd03259 ABC_Carb_Solutes_like 75.8 24 0.00051 30.9 9.2 69 114-206 138-206 (213)
105 PRK11701 phnK phosphonate C-P 75.7 23 0.0005 32.1 9.3 69 114-206 159-227 (258)
106 cd03298 ABC_ThiQ_thiamine_tran 75.6 16 0.00034 32.0 8.0 69 114-206 136-204 (211)
107 PF05763 DUF835: Protein of un 75.5 9.3 0.0002 32.4 6.2 67 109-180 58-124 (136)
108 PRK15079 oligopeptide ABC tran 75.0 23 0.0005 34.0 9.5 70 114-207 169-238 (331)
109 PRK13634 cbiO cobalt transport 74.9 28 0.0006 32.5 9.9 69 114-206 153-221 (290)
110 cd03557 L-arabinose_isomerase 74.9 21 0.00046 36.5 9.6 69 91-175 28-99 (484)
111 COG4604 CeuD ABC-type enteroch 74.6 9.2 0.0002 35.5 6.2 51 117-175 144-194 (252)
112 TIGR00960 3a0501s02 Type II (G 74.6 28 0.00061 30.5 9.4 61 123-206 153-213 (216)
113 cd03267 ABC_NatA_like Similar 73.6 25 0.00053 31.6 8.9 62 123-206 168-229 (236)
114 cd03255 ABC_MJ0796_Lo1CDE_FtsE 73.6 29 0.00063 30.4 9.2 60 124-206 156-215 (218)
115 cd03292 ABC_FtsE_transporter F 73.2 28 0.0006 30.4 8.9 61 123-206 151-211 (214)
116 cd03262 ABC_HisP_GlnQ_permease 73.1 31 0.00066 30.1 9.2 60 124-206 151-210 (213)
117 cd08148 RuBisCO_large Ribulose 72.9 53 0.0012 32.5 11.6 47 86-135 183-229 (366)
118 PRK10771 thiQ thiamine transpo 72.9 21 0.00046 31.8 8.2 61 124-206 145-205 (232)
119 cd03590 CLECT_DC-SIGN_like C-t 72.8 3.5 7.6E-05 32.5 2.8 43 238-281 6-48 (126)
120 TIGR01184 ntrCD nitrate transp 72.7 19 0.00041 32.2 7.9 61 124-206 130-190 (230)
121 cd03225 ABC_cobalt_CbiO_domain 72.2 23 0.00049 30.9 8.1 68 114-206 142-209 (211)
122 PRK13548 hmuV hemin importer A 72.0 19 0.00041 32.9 7.8 73 112-206 140-216 (258)
123 PRK11248 tauB taurine transpor 71.8 31 0.00067 31.5 9.2 61 124-206 144-204 (255)
124 PTZ00445 p36-lilke protein; Pr 71.8 12 0.00025 34.6 6.2 72 109-180 25-104 (219)
125 PRK11153 metN DL-methionine tr 71.7 31 0.00068 33.2 9.6 69 114-206 148-216 (343)
126 cd03293 ABC_NrtD_SsuB_transpor 71.6 37 0.00081 29.8 9.4 69 114-206 139-207 (220)
127 PRK11300 livG leucine/isoleuci 71.6 28 0.00062 31.3 8.8 62 123-206 168-229 (255)
128 PRK14250 phosphate ABC transpo 71.4 31 0.00067 31.0 9.0 69 114-206 139-207 (241)
129 TIGR02769 nickel_nikE nickel i 71.2 34 0.00073 31.3 9.3 68 115-206 159-226 (265)
130 TIGR03332 salvage_mtnW 2,3-dik 71.2 53 0.0011 33.0 11.2 47 86-135 195-241 (407)
131 PRK10247 putative ABC transpor 71.0 47 0.001 29.5 10.0 62 124-208 153-214 (225)
132 cd03257 ABC_NikE_OppD_transpor 70.5 26 0.00055 30.8 8.1 61 124-206 161-221 (228)
133 cd03237 ABC_RNaseL_inhibitor_d 70.3 22 0.00047 32.5 7.8 70 114-207 123-192 (246)
134 PRK09984 phosphonate/organopho 70.2 35 0.00076 31.0 9.2 69 114-206 160-228 (262)
135 TIGR00968 3a0106s01 sulfate AB 69.9 36 0.00078 30.5 9.1 61 124-206 146-206 (237)
136 PRK11022 dppD dipeptide transp 69.7 32 0.0007 32.9 9.2 71 113-207 160-230 (326)
137 cd03226 ABC_cobalt_CbiO_domain 69.6 49 0.0011 28.8 9.6 69 113-206 133-201 (205)
138 PRK13633 cobalt transporter AT 69.4 58 0.0012 30.1 10.5 61 123-206 159-219 (280)
139 COG1535 EntB Isochorismate hyd 69.2 6.5 0.00014 35.6 3.9 57 151-207 55-126 (218)
140 PF00586 AIRS: AIR synthase re 69.2 15 0.00031 28.4 5.6 52 114-171 41-92 (96)
141 COG1121 ZnuC ABC-type Mn/Zn tr 69.2 12 0.00026 35.2 5.9 63 124-209 155-217 (254)
142 cd03294 ABC_Pro_Gly_Bertaine T 69.1 39 0.00085 31.0 9.3 74 109-206 161-236 (269)
143 PRK10851 sulfate/thiosulfate t 68.6 41 0.00088 32.7 9.7 70 113-206 143-212 (353)
144 PRK15112 antimicrobial peptide 68.5 37 0.00079 31.1 9.0 68 115-206 158-225 (267)
145 PRK15093 antimicrobial peptide 68.5 26 0.00056 33.5 8.2 63 123-207 173-235 (330)
146 cd03235 ABC_Metallic_Cations A 68.4 40 0.00086 29.5 8.8 69 113-206 139-207 (213)
147 cd03295 ABC_OpuCA_Osmoprotecti 68.4 40 0.00087 30.2 9.1 68 115-206 144-211 (242)
148 PRK10261 glutathione transport 68.3 29 0.00063 36.1 9.1 71 113-207 470-540 (623)
149 TIGR01277 thiQ thiamine ABC tr 68.2 31 0.00067 30.3 8.1 70 113-206 135-204 (213)
150 COG0381 WecB UDP-N-acetylgluco 68.2 11 0.00024 37.5 5.6 32 150-181 219-251 (383)
151 cd07014 S49_SppA Signal peptid 68.1 30 0.00066 29.8 7.9 63 104-175 17-79 (177)
152 PRK13475 ribulose bisphosphate 68.0 66 0.0014 32.7 11.2 93 20-135 169-265 (443)
153 PRK11247 ssuB aliphatic sulfon 67.5 32 0.00069 31.7 8.3 69 114-206 141-209 (257)
154 cd03296 ABC_CysA_sulfate_impor 67.5 44 0.00095 29.9 9.1 69 114-206 144-212 (239)
155 cd03219 ABC_Mj1267_LivG_branch 67.4 52 0.0011 29.1 9.5 60 124-206 159-218 (236)
156 TIGR03269 met_CoM_red_A2 methy 67.3 42 0.00091 33.9 9.8 55 114-178 176-230 (520)
157 PF01380 SIS: SIS domain SIS d 67.2 14 0.0003 29.3 5.2 43 153-209 67-109 (131)
158 cd03589 CLECT_CEL-1_like C-typ 67.1 4 8.7E-05 32.9 2.1 43 238-281 6-53 (137)
159 TIGR01188 drrA daunorubicin re 66.6 41 0.00089 31.5 9.0 62 123-207 139-200 (302)
160 TIGR02142 modC_ABC molybdenum 66.6 44 0.00095 32.2 9.4 56 113-178 138-193 (354)
161 PRK11144 modC molybdate transp 66.1 49 0.0011 32.0 9.6 70 113-206 135-204 (352)
162 PRK13652 cbiO cobalt transport 66.1 39 0.00085 31.2 8.7 63 123-207 152-214 (277)
163 cd03214 ABC_Iron-Siderophores_ 65.8 46 0.00099 28.5 8.6 70 113-206 104-173 (180)
164 TIGR01618 phage_P_loop phage n 65.8 34 0.00074 31.3 8.0 98 109-207 63-183 (220)
165 COG1123 ATPase components of v 65.7 20 0.00042 37.3 7.1 64 123-208 169-232 (539)
166 TIGR03265 PhnT2 putative 2-ami 65.6 47 0.001 32.2 9.4 71 112-206 140-210 (353)
167 PRK10619 histidine/lysine/argi 65.5 57 0.0012 29.5 9.5 60 124-206 168-227 (257)
168 PRK10419 nikE nickel transport 65.3 60 0.0013 29.8 9.7 69 114-206 159-227 (268)
169 PRK09544 znuC high-affinity zi 65.0 30 0.00065 31.6 7.6 60 124-205 136-195 (251)
170 PRK11650 ugpC glycerol-3-phosp 65.0 48 0.001 32.2 9.4 56 113-178 141-196 (356)
171 TIGR03005 ectoine_ehuA ectoine 64.9 54 0.0012 29.6 9.2 69 114-206 154-222 (252)
172 PRK13635 cbiO cobalt transport 64.8 40 0.00086 31.3 8.5 61 123-206 155-215 (279)
173 cd03300 ABC_PotA_N PotA is an 64.8 41 0.0009 29.9 8.4 61 124-206 146-206 (232)
174 TIGR03873 F420-0_ABC_ATP propo 64.8 55 0.0012 29.6 9.3 61 124-207 153-213 (256)
175 cd03588 CLECT_CSPGs C-type lec 64.7 6.4 0.00014 31.7 2.8 42 238-280 6-47 (124)
176 PRK10908 cell division protein 64.7 39 0.00085 29.8 8.1 60 124-206 153-212 (222)
177 TIGR03269 met_CoM_red_A2 methy 64.6 39 0.00084 34.1 9.0 69 114-206 435-503 (520)
178 PF00004 AAA: ATPase family as 64.4 23 0.00051 27.6 6.0 66 110-175 42-110 (132)
179 TIGR02323 CP_lyasePhnK phospho 64.2 55 0.0012 29.4 9.1 62 123-206 163-224 (253)
180 cd01828 sialate_O-acetylestera 64.1 35 0.00076 28.3 7.3 45 125-173 86-130 (169)
181 TIGR02432 lysidine_TilS_N tRNA 63.9 60 0.0013 27.8 9.0 66 113-179 45-111 (189)
182 PRK13648 cbiO cobalt transport 63.7 63 0.0014 29.6 9.5 76 108-206 142-217 (269)
183 cd03238 ABC_UvrA The excision 63.6 55 0.0012 28.6 8.7 70 113-206 94-163 (176)
184 PRK09493 glnQ glutamine ABC tr 63.6 54 0.0012 29.2 8.9 67 115-206 145-211 (240)
185 TIGR02673 FtsE cell division A 63.3 58 0.0013 28.4 8.9 68 114-206 145-212 (214)
186 PF00308 Bac_DnaA: Bacterial d 63.1 80 0.0017 28.4 9.9 47 126-180 97-145 (219)
187 TIGR02770 nickel_nikD nickel i 63.0 60 0.0013 28.8 9.1 69 114-206 133-201 (230)
188 PRK10261 glutathione transport 62.8 40 0.00087 35.1 8.9 68 114-205 176-243 (623)
189 cd03218 ABC_YhbG The ABC trans 62.7 64 0.0014 28.5 9.1 61 123-206 148-208 (232)
190 TIGR02314 ABC_MetN D-methionin 62.4 64 0.0014 31.3 9.7 70 113-206 147-216 (343)
191 cd03266 ABC_NatA_sodium_export 62.3 46 0.00099 29.1 8.1 60 124-206 152-211 (218)
192 TIGR01187 potA spermidine/putr 62.3 70 0.0015 30.4 9.9 56 113-178 107-162 (325)
193 cd03597 CLECT_attractin_like C 62.1 8.8 0.00019 31.4 3.2 43 238-281 6-48 (129)
194 cd03229 ABC_Class3 This class 61.9 61 0.0013 27.7 8.6 59 125-205 117-175 (178)
195 cd03285 ABC_MSH2_euk MutS2 hom 61.9 45 0.00097 30.1 8.0 58 112-176 95-152 (222)
196 cd03224 ABC_TM1139_LivF_branch 61.7 50 0.0011 28.9 8.2 68 114-206 140-207 (222)
197 cd00544 CobU Adenosylcobinamid 61.6 56 0.0012 28.4 8.3 50 126-175 73-124 (169)
198 PRK10762 D-ribose transporter 61.6 60 0.0013 32.6 9.7 47 123-178 156-202 (501)
199 PRK11264 putative amino-acid A 61.5 72 0.0016 28.6 9.4 68 114-206 152-219 (250)
200 PRK11831 putative ABC transpor 61.4 43 0.00093 30.7 8.0 61 124-206 159-219 (269)
201 PRK13647 cbiO cobalt transport 61.3 47 0.001 30.6 8.3 69 114-207 146-214 (274)
202 PRK15134 microcin C ABC transp 61.3 46 0.00099 33.7 8.8 69 114-206 433-501 (529)
203 PRK03695 vitamin B12-transport 61.3 37 0.00081 30.7 7.5 72 113-207 133-209 (248)
204 cd03279 ABC_sbcCD SbcCD and ot 61.1 54 0.0012 29.0 8.3 58 112-178 129-194 (213)
205 cd03227 ABC_Class2 ABC-type Cl 61.0 48 0.001 28.0 7.7 58 111-177 82-141 (162)
206 TIGR03410 urea_trans_UrtE urea 61.0 55 0.0012 28.9 8.4 63 123-207 146-208 (230)
207 PRK10253 iron-enterobactin tra 61.0 48 0.001 30.3 8.2 69 114-206 151-219 (265)
208 TIGR02982 heterocyst_DevA ABC 61.0 87 0.0019 27.5 9.7 68 114-206 149-216 (220)
209 PRK11000 maltose/maltodextrin 60.4 68 0.0015 31.3 9.5 56 113-178 140-195 (369)
210 PRK13649 cbiO cobalt transport 60.3 77 0.0017 29.1 9.5 60 124-206 161-220 (280)
211 cd03599 CLECT_DGCR2_like C-typ 60.0 7.7 0.00017 33.5 2.6 43 239-282 7-51 (153)
212 PRK13641 cbiO cobalt transport 59.5 78 0.0017 29.4 9.5 69 114-207 153-221 (287)
213 PRK13642 cbiO cobalt transport 59.4 63 0.0014 29.8 8.8 70 113-207 147-216 (277)
214 PRK11440 putative hydrolase; P 59.2 27 0.00059 30.3 6.0 48 127-175 9-56 (188)
215 PRK10418 nikD nickel transport 59.1 95 0.0021 28.1 9.8 69 114-206 148-216 (254)
216 PRK09473 oppD oligopeptide tra 59.1 56 0.0012 31.3 8.6 62 124-207 177-238 (330)
217 PRK08727 hypothetical protein; 59.1 94 0.002 28.0 9.7 43 125-175 92-134 (233)
218 PF03786 UxuA: D-mannonate deh 58.8 23 0.00049 34.9 5.9 63 109-173 42-104 (351)
219 PRK13645 cbiO cobalt transport 58.7 53 0.0012 30.4 8.2 69 114-206 158-226 (289)
220 cd00431 cysteine_hydrolases Cy 58.6 34 0.00074 28.4 6.3 50 129-178 2-51 (161)
221 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 58.5 55 0.0012 29.1 8.0 60 124-206 158-217 (224)
222 cd03216 ABC_Carb_Monos_I This 58.5 76 0.0016 26.8 8.5 70 112-206 88-157 (163)
223 PRK13636 cbiO cobalt transport 58.1 57 0.0012 30.2 8.3 63 123-207 156-218 (283)
224 smart00034 CLECT C-type lectin 58.0 7.8 0.00017 29.7 2.1 41 240-281 8-48 (126)
225 PRK13547 hmuV hemin importer A 57.6 50 0.0011 30.6 7.8 61 125-207 171-231 (272)
226 cd01993 Alpha_ANH_like_II This 57.0 59 0.0013 27.4 7.6 67 112-179 46-118 (185)
227 PRK11613 folP dihydropteroate 57.0 33 0.00072 32.6 6.5 55 115-179 166-222 (282)
228 PRK11614 livF leucine/isoleuci 56.6 51 0.0011 29.3 7.5 68 114-206 145-212 (237)
229 COG1850 RbcL Ribulose 1,5-bisp 56.6 1E+02 0.0022 31.1 9.9 47 86-135 211-257 (429)
230 COG4148 ModC ABC-type molybdat 56.5 9.3 0.0002 37.1 2.7 59 111-179 133-191 (352)
231 PRK15439 autoinducer 2 ABC tra 56.5 94 0.002 31.4 10.1 54 114-178 148-201 (510)
232 PRK09452 potA putrescine/sperm 56.5 52 0.0011 32.3 8.1 57 112-178 150-206 (375)
233 COG1205 Distinct helicase fami 56.3 44 0.00095 36.6 8.1 144 5-173 78-236 (851)
234 PRK09700 D-allose transporter 56.2 83 0.0018 31.6 9.7 69 113-206 416-484 (510)
235 PRK13546 teichoic acids export 56.2 1.1E+02 0.0024 28.2 9.8 79 105-206 140-218 (264)
236 cd03269 ABC_putative_ATPase Th 56.2 68 0.0015 27.9 8.1 60 124-206 144-203 (210)
237 PLN03140 ABC transporter G fam 56.2 1.2E+02 0.0025 35.5 11.7 61 123-206 1034-1095(1470)
238 TIGR03411 urea_trans_UrtD urea 56.1 99 0.0022 27.5 9.3 60 123-206 158-217 (242)
239 PRK14258 phosphate ABC transpo 55.6 77 0.0017 28.8 8.6 69 114-206 158-226 (261)
240 KOG1695|consensus 55.6 28 0.0006 31.7 5.5 87 26-165 15-102 (206)
241 cd03284 ABC_MutS1 MutS1 homolo 55.6 78 0.0017 28.4 8.5 60 112-178 95-154 (216)
242 PF00488 MutS_V: MutS domain V 55.5 82 0.0018 28.8 8.7 47 126-179 122-168 (235)
243 PRK15439 autoinducer 2 ABC tra 55.2 73 0.0016 32.2 9.1 70 112-206 409-478 (510)
244 cd05014 SIS_Kpsf KpsF-like pro 55.2 23 0.00051 28.1 4.6 40 154-207 62-101 (128)
245 PF00857 Isochorismatase: Isoc 55.1 27 0.00059 29.3 5.2 46 129-175 3-48 (174)
246 PRK13549 xylose transporter AT 55.0 86 0.0019 31.5 9.5 69 113-206 412-480 (506)
247 PRK09700 D-allose transporter 55.0 92 0.002 31.3 9.7 45 123-176 160-204 (510)
248 PRK13643 cbiO cobalt transport 54.7 1.1E+02 0.0024 28.4 9.7 62 123-207 159-220 (288)
249 PRK11231 fecE iron-dicitrate t 54.6 92 0.002 28.1 8.9 60 124-206 154-213 (255)
250 PRK11288 araG L-arabinose tran 54.6 84 0.0018 31.6 9.4 52 114-176 148-199 (501)
251 PRK13637 cbiO cobalt transport 54.5 82 0.0018 29.3 8.7 71 113-207 151-221 (287)
252 PRK11432 fbpC ferric transport 54.5 99 0.0021 30.0 9.5 56 113-178 143-198 (351)
253 cd03230 ABC_DR_subfamily_A Thi 54.4 89 0.0019 26.5 8.3 67 115-206 104-170 (173)
254 PF01171 ATP_bind_3: PP-loop f 54.4 71 0.0015 27.5 7.8 75 100-180 33-109 (182)
255 smart00534 MUTSac ATPase domai 54.4 71 0.0015 27.6 7.8 58 114-178 66-123 (185)
256 PRK15134 microcin C ABC transp 54.2 83 0.0018 31.8 9.3 56 113-178 163-218 (529)
257 PF12683 DUF3798: Protein of u 54.0 13 0.00029 35.3 3.3 95 100-204 5-113 (275)
258 TIGR01166 cbiO cobalt transpor 53.8 1.1E+02 0.0023 26.2 8.8 52 115-177 136-187 (190)
259 PRK11609 nicotinamidase/pyrazi 53.7 39 0.00084 29.9 6.1 47 128-175 4-51 (212)
260 PRK11288 araG L-arabinose tran 53.6 83 0.0018 31.6 9.1 61 123-206 411-471 (501)
261 PRK15056 manganese/iron transp 53.4 1.1E+02 0.0023 28.1 9.2 54 114-178 150-203 (272)
262 TIGR01288 nodI ATP-binding ABC 53.4 93 0.002 29.1 9.0 61 123-206 150-210 (303)
263 TIGR02633 xylG D-xylose ABC tr 53.3 1E+02 0.0023 30.8 9.8 55 113-178 148-202 (500)
264 cd03240 ABC_Rad50 The catalyti 53.0 42 0.0009 29.7 6.2 61 125-208 138-199 (204)
265 PRK13638 cbiO cobalt transport 53.0 1.1E+02 0.0025 27.9 9.3 69 114-207 144-212 (271)
266 PRK13650 cbiO cobalt transport 52.9 1.1E+02 0.0024 28.3 9.3 68 114-206 148-215 (279)
267 cd00009 AAA The AAA+ (ATPases 52.6 95 0.0021 23.7 7.6 47 123-178 81-131 (151)
268 PRK13651 cobalt transporter AT 52.6 1E+02 0.0023 29.1 9.2 68 114-206 173-240 (305)
269 cd02876 GH18_SI-CLP Stabilin-1 52.6 1E+02 0.0023 29.0 9.2 92 114-207 96-188 (318)
270 PRK13644 cbiO cobalt transport 52.5 1.2E+02 0.0026 27.9 9.4 68 114-207 144-211 (274)
271 cd01014 nicotinamidase_related 52.5 44 0.00096 28.1 6.0 46 129-175 2-47 (155)
272 PHA03097 C-type lectin-like pr 52.3 15 0.00032 31.8 3.0 48 232-281 46-93 (157)
273 TIGR03740 galliderm_ABC gallid 52.0 56 0.0012 28.8 6.9 60 124-206 140-199 (223)
274 cd01832 SGNH_hydrolase_like_1 51.9 59 0.0013 27.2 6.7 64 109-173 85-151 (185)
275 COG0444 DppD ABC-type dipeptid 51.9 19 0.00041 35.0 4.0 65 121-207 166-230 (316)
276 TIGR02858 spore_III_AA stage I 51.8 37 0.00081 31.9 6.0 70 118-207 186-258 (270)
277 cd03236 ABC_RNaseL_inhibitor_d 51.6 69 0.0015 29.5 7.6 67 114-205 147-213 (255)
278 cd03280 ABC_MutS2 MutS2 homolo 51.2 63 0.0014 28.2 7.0 43 125-176 107-150 (200)
279 cd03268 ABC_BcrA_bacitracin_re 51.1 89 0.0019 27.1 8.0 60 124-206 142-201 (208)
280 cd00578 L-fuc_L-ara-isomerases 51.1 97 0.0021 30.9 9.1 68 91-175 28-96 (452)
281 PRK11607 potG putrescine trans 51.1 73 0.0016 31.3 8.1 56 113-178 156-211 (377)
282 TIGR02633 xylG D-xylose ABC tr 51.0 1.1E+02 0.0023 30.7 9.5 69 113-206 410-478 (500)
283 PRK10938 putative molybdenum t 50.8 1.2E+02 0.0025 30.4 9.6 54 112-176 141-194 (490)
284 PRK13536 nodulation factor exp 50.5 72 0.0016 30.8 7.8 63 122-207 186-248 (340)
285 TIGR03771 anch_rpt_ABC anchore 50.4 96 0.0021 27.5 8.2 59 123-204 128-186 (223)
286 TIGR03258 PhnT 2-aminoethylpho 50.4 1.2E+02 0.0027 29.5 9.5 56 113-178 144-200 (362)
287 cd03239 ABC_SMC_head The struc 50.3 1.1E+02 0.0025 26.4 8.4 59 125-207 115-173 (178)
288 COG1606 ATP-utilizing enzymes 50.3 1.4E+02 0.0031 28.4 9.4 63 110-173 55-119 (269)
289 PRK13409 putative ATPase RIL; 50.3 78 0.0017 33.0 8.5 62 123-206 468-529 (590)
290 PRK13549 xylose transporter AT 50.2 1.2E+02 0.0025 30.6 9.6 53 114-177 151-203 (506)
291 cd03222 ABC_RNaseL_inhibitor T 50.1 1.1E+02 0.0024 26.7 8.3 71 112-206 77-147 (177)
292 PRK10070 glycine betaine trans 49.9 1.4E+02 0.0031 29.6 10.0 56 113-178 171-226 (400)
293 PRK13646 cbiO cobalt transport 49.8 1.1E+02 0.0025 28.3 8.8 69 114-206 153-221 (286)
294 PRK02929 L-arabinose isomerase 49.8 1E+02 0.0022 31.7 9.1 74 91-180 34-112 (499)
295 TIGR00695 uxuA mannonate dehyd 49.7 57 0.0012 32.6 7.1 64 108-173 39-102 (394)
296 PRK10762 D-ribose transporter 49.2 1.2E+02 0.0025 30.6 9.4 68 114-206 403-470 (501)
297 cd03278 ABC_SMC_barmotin Barmo 49.1 1E+02 0.0022 27.1 8.0 71 113-208 120-192 (197)
298 cd07566 ScNTA1_like Saccharomy 49.0 64 0.0014 30.4 7.1 95 110-208 17-120 (295)
299 PRK10982 galactose/methyl gala 48.8 1.3E+02 0.0028 30.1 9.6 52 114-176 142-193 (491)
300 cd01992 PP-ATPase N-terminal d 48.8 1.6E+02 0.0036 24.8 10.5 63 112-179 44-108 (185)
301 PRK10263 DNA translocase FtsK; 48.8 21 0.00045 40.9 4.2 43 129-177 1143-1186(1355)
302 cd03253 ABCC_ATM1_transporter 48.7 1.2E+02 0.0025 26.9 8.4 60 123-207 152-211 (236)
303 cd03263 ABC_subfamily_A The AB 48.6 1E+02 0.0022 27.0 8.0 59 124-206 149-207 (220)
304 PF08645 PNK3P: Polynucleotide 48.5 61 0.0013 27.8 6.3 59 114-178 34-92 (159)
305 cd07582 nitrilase_4 Uncharacte 48.3 55 0.0012 30.4 6.5 64 110-174 22-97 (294)
306 PRK13639 cbiO cobalt transport 48.0 1.1E+02 0.0024 28.2 8.4 60 124-206 153-212 (275)
307 cd03251 ABCC_MsbA MsbA is an e 48.0 1.4E+02 0.0031 26.3 8.9 66 114-206 146-211 (234)
308 TIGR02211 LolD_lipo_ex lipopro 47.9 1.7E+02 0.0036 25.6 9.2 60 124-206 157-216 (221)
309 COG1124 DppF ABC-type dipeptid 47.8 1.6E+02 0.0035 27.8 9.3 172 11-208 32-219 (252)
310 COG2861 Uncharacterized protei 47.7 2.5E+02 0.0054 26.5 10.5 77 91-180 143-219 (250)
311 cd03594 CLECT_REG-1_like C-typ 47.6 18 0.00039 28.6 2.8 43 238-281 6-50 (129)
312 PRK13409 putative ATPase RIL; 47.4 1.2E+02 0.0026 31.6 9.4 61 109-179 213-273 (590)
313 cd01013 isochorismatase Isocho 47.1 47 0.001 29.4 5.6 51 126-176 29-79 (203)
314 PRK13631 cbiO cobalt transport 47.1 1.7E+02 0.0037 27.8 9.8 69 114-207 184-252 (320)
315 PRK13632 cbiO cobalt transport 47.1 2.2E+02 0.0047 26.1 10.2 61 123-206 157-217 (271)
316 PHA02953 IEV and EEV membrane 47.0 19 0.00042 31.6 3.0 40 232-273 47-86 (170)
317 PRK13537 nodulation ABC transp 46.9 92 0.002 29.4 7.8 63 122-207 152-214 (306)
318 COG1120 FepC ABC-type cobalami 46.9 1.3E+02 0.0029 28.3 8.8 63 123-208 153-216 (258)
319 PRK05253 sulfate adenylyltrans 46.7 1.6E+02 0.0035 28.1 9.5 81 98-180 58-140 (301)
320 smart00382 AAA ATPases associa 46.7 1.2E+02 0.0026 22.7 8.4 54 120-176 72-125 (148)
321 PF13304 AAA_21: AAA domain; P 46.7 93 0.002 25.9 7.1 52 116-176 246-298 (303)
322 TIGR00762 DegV EDD domain prot 46.6 86 0.0019 29.1 7.5 78 86-175 95-190 (275)
323 cd07572 nit Nit1, Nit 2, and r 46.3 41 0.0009 30.2 5.2 67 110-178 16-86 (265)
324 COG0167 PyrD Dihydroorotate de 46.3 1.8E+02 0.004 28.1 9.8 84 86-173 150-247 (310)
325 COG1707 ACT domain-containing 46.0 1.3E+02 0.0029 27.1 8.1 68 95-177 111-178 (218)
326 PRK14245 phosphate ABC transpo 45.8 1.3E+02 0.0029 27.0 8.4 67 114-206 154-220 (250)
327 cd07579 nitrilase_1_R2 Second 45.8 30 0.00065 32.2 4.3 63 110-174 16-78 (279)
328 COG0037 MesJ tRNA(Ile)-lysidin 45.2 1.4E+02 0.0031 27.3 8.7 79 100-180 53-133 (298)
329 PRK14240 phosphate transporter 44.9 1.2E+02 0.0026 27.2 8.0 60 123-206 161-220 (250)
330 PRK10938 putative molybdenum t 44.8 1.6E+02 0.0034 29.4 9.5 62 123-206 416-478 (490)
331 PRK10982 galactose/methyl gala 44.7 1.2E+02 0.0026 30.3 8.7 68 114-206 399-466 (491)
332 PF01580 FtsK_SpoIIIE: FtsK/Sp 44.6 11 0.00023 33.0 1.0 49 125-175 153-201 (205)
333 cd02193 PurL Formylglycinamide 44.6 49 0.0011 30.6 5.5 57 111-171 23-81 (272)
334 COG1136 SalX ABC-type antimicr 44.5 1.2E+02 0.0026 28.1 7.9 69 112-205 148-216 (226)
335 TIGR00972 3a0107s01c2 phosphat 44.5 1.2E+02 0.0026 27.2 7.9 67 114-206 152-218 (247)
336 TIGR01630 psiM2_ORF9 phage unc 44.4 65 0.0014 26.6 5.7 80 99-192 15-98 (142)
337 PF13472 Lipase_GDSL_2: GDSL-l 44.3 1.6E+02 0.0035 23.4 8.1 50 123-173 99-149 (179)
338 cd01825 SGNH_hydrolase_peri1 S 44.2 79 0.0017 26.4 6.3 49 125-173 95-143 (189)
339 cd07022 S49_Sppa_36K_type Sign 44.1 1.2E+02 0.0025 27.1 7.7 58 109-176 25-82 (214)
340 PRK11124 artP arginine transpo 43.7 1.9E+02 0.0041 25.7 9.1 68 114-206 149-216 (242)
341 cd07585 nitrilase_7 Uncharacte 43.5 57 0.0012 29.3 5.7 63 110-174 17-82 (261)
342 cd03287 ABC_MSH3_euk MutS3 hom 43.5 1.1E+02 0.0025 27.7 7.6 60 113-179 97-156 (222)
343 cd03213 ABCG_EPDR ABCG transpo 43.3 2.2E+02 0.0047 24.6 9.2 69 114-206 119-187 (194)
344 PRK14244 phosphate ABC transpo 43.2 1.3E+02 0.0029 26.9 8.0 66 115-206 158-223 (251)
345 cd07583 nitrilase_5 Uncharacte 43.2 78 0.0017 28.3 6.5 62 110-175 17-82 (253)
346 cd01012 YcaC_related YcaC rela 43.1 45 0.00099 28.0 4.7 43 129-175 2-44 (157)
347 PRK10895 lipopolysaccharide AB 43.0 1.7E+02 0.0037 26.0 8.6 68 115-207 146-213 (241)
348 PRK14269 phosphate ABC transpo 42.7 1.6E+02 0.0035 26.4 8.5 60 123-206 157-216 (246)
349 cd03248 ABCC_TAP TAP, the Tran 42.5 2.2E+02 0.0048 24.9 9.2 58 124-206 166-223 (226)
350 PF00795 CN_hydrolase: Carbon- 42.4 48 0.001 27.9 4.7 63 111-175 20-92 (186)
351 cd03260 ABC_PstB_phosphate_tra 42.1 1.8E+02 0.0039 25.6 8.5 67 114-206 149-215 (227)
352 PRK13539 cytochrome c biogenes 41.9 1.7E+02 0.0038 25.5 8.4 46 124-178 143-188 (207)
353 cd04145 M_R_Ras_like M-Ras/R-R 41.8 1.3E+02 0.0028 24.2 7.1 65 99-175 51-115 (164)
354 PF00809 Pterin_bind: Pterin b 41.7 67 0.0015 28.7 5.8 47 124-178 158-206 (210)
355 TIGR01978 sufC FeS assembly AT 41.6 2.5E+02 0.0054 24.8 9.8 60 124-206 160-220 (243)
356 PRK14267 phosphate ABC transpo 41.6 1.6E+02 0.0035 26.3 8.3 58 125-206 166-223 (253)
357 cd07576 R-amidase_like Pseudom 41.5 83 0.0018 28.0 6.4 62 110-173 17-81 (254)
358 cd03234 ABCG_White The White s 41.5 2.2E+02 0.0047 25.1 9.0 68 115-206 152-219 (226)
359 CHL00131 ycf16 sulfate ABC tra 41.5 2.6E+02 0.0056 25.0 9.8 60 124-206 167-227 (252)
360 cd03281 ABC_MSH5_euk MutS5 hom 41.4 1.3E+02 0.0028 26.9 7.6 58 113-177 95-154 (213)
361 PRK13545 tagH teichoic acids e 41.3 1.8E+02 0.004 30.4 9.5 53 115-178 152-204 (549)
362 PRK11629 lolD lipoprotein tran 41.1 2.5E+02 0.0055 24.8 9.4 48 123-178 160-207 (233)
363 cd03596 CLECT_tetranectin_like 41.0 28 0.0006 28.0 2.9 41 233-276 2-42 (129)
364 PRK14272 phosphate ABC transpo 41.0 1.9E+02 0.0041 25.8 8.7 60 123-206 163-222 (252)
365 PF05473 Herpes_UL45: UL45 pro 40.9 37 0.0008 30.7 3.9 43 232-275 85-127 (200)
366 TIGR00789 flhB_rel flhB C-term 40.7 23 0.00049 27.7 2.2 20 152-171 25-44 (82)
367 PF00072 Response_reg: Respons 40.3 99 0.0021 23.1 5.8 52 110-178 31-82 (112)
368 cd08211 RuBisCO_large_II Ribul 40.3 4.2E+02 0.009 27.0 11.9 49 86-135 212-264 (439)
369 cd01015 CSHase N-carbamoylsarc 40.3 75 0.0016 27.3 5.7 46 129-175 2-48 (179)
370 cd03215 ABC_Carb_Monos_II This 40.1 1.7E+02 0.0037 24.9 7.9 58 125-205 121-178 (182)
371 cd03252 ABCC_Hemolysin The ABC 40.1 1.7E+02 0.0037 25.9 8.1 67 114-207 146-212 (237)
372 PRK13640 cbiO cobalt transport 40.0 1.6E+02 0.0034 27.2 8.2 61 123-206 158-218 (282)
373 cd03233 ABC_PDR_domain1 The pl 39.9 2.1E+02 0.0045 25.0 8.5 61 124-206 134-195 (202)
374 cd07571 ALP_N-acyl_transferase 39.9 50 0.0011 30.3 4.8 57 110-175 24-80 (270)
375 PRK14236 phosphate transporter 39.7 2.1E+02 0.0046 26.2 8.9 66 115-206 177-242 (272)
376 cd03264 ABC_drug_resistance_li 39.7 1.6E+02 0.0035 25.5 7.8 58 124-205 146-203 (211)
377 cd03286 ABC_MSH6_euk MutS6 hom 39.7 1.4E+02 0.0031 27.0 7.6 59 112-178 95-154 (218)
378 PRK14252 phosphate ABC transpo 39.6 2E+02 0.0043 26.1 8.7 58 125-206 178-235 (265)
379 PRK14268 phosphate ABC transpo 39.6 1.7E+02 0.0037 26.5 8.2 67 114-206 162-228 (258)
380 TIGR00715 precor6x_red precorr 39.5 65 0.0014 30.1 5.5 44 120-178 191-234 (256)
381 cd07018 S49_SppA_67K_type Sign 39.5 1.6E+02 0.0034 26.5 7.9 59 108-175 28-86 (222)
382 cd01834 SGNH_hydrolase_like_2 39.5 1.4E+02 0.003 24.7 7.1 62 110-171 83-151 (191)
383 PRK12858 tagatose 1,6-diphosph 39.3 2.6E+02 0.0056 27.3 9.8 91 86-177 146-251 (340)
384 TIGR00956 3a01205 Pleiotropic 39.3 68 0.0015 37.0 6.5 71 113-207 216-287 (1394)
385 PRK08699 DNA polymerase III su 39.2 88 0.0019 30.1 6.5 57 109-176 93-152 (325)
386 TIGR03608 L_ocin_972_ABC putat 39.1 2.5E+02 0.0053 24.1 8.8 47 123-178 149-195 (206)
387 PRK09580 sufC cysteine desulfu 39.0 2E+02 0.0044 25.5 8.5 61 123-206 160-221 (248)
388 cd07565 aliphatic_amidase alip 39.0 1E+02 0.0022 28.8 6.8 61 110-172 22-88 (291)
389 cd01990 Alpha_ANH_like_I This 38.8 1E+02 0.0023 26.7 6.4 65 114-178 40-106 (202)
390 PF00270 DEAD: DEAD/DEAH box h 38.6 26 0.00056 28.7 2.4 59 109-175 101-160 (169)
391 TIGR00884 guaA_Cterm GMP synth 38.4 1.5E+02 0.0032 28.5 7.8 77 99-177 46-127 (311)
392 PRK14265 phosphate ABC transpo 38.0 2E+02 0.0043 26.5 8.4 67 114-206 169-235 (274)
393 cd07019 S49_SppA_1 Signal pept 38.0 1.8E+02 0.004 25.8 8.0 61 107-176 19-79 (211)
394 PRK14238 phosphate transporter 38.0 2.1E+02 0.0045 26.2 8.6 67 114-206 175-241 (271)
395 PRK14242 phosphate transporter 37.9 2.3E+02 0.0049 25.4 8.7 67 114-206 157-223 (253)
396 cd00037 CLECT C-type lectin (C 37.8 19 0.0004 26.7 1.3 30 252-281 9-38 (116)
397 PRK13540 cytochrome c biogenes 37.8 2.7E+02 0.0058 24.1 9.3 46 124-178 143-188 (200)
398 PRK14261 phosphate ABC transpo 37.8 1.9E+02 0.0041 26.0 8.2 60 123-206 164-223 (253)
399 TIGR01526 nadR_NMN_Atrans nico 37.8 1.2E+02 0.0025 29.2 7.0 52 123-175 267-318 (325)
400 cd07564 nitrilases_CHs Nitrila 37.6 1.2E+02 0.0025 28.3 6.9 64 110-175 18-97 (297)
401 PRK14235 phosphate transporter 37.6 2.1E+02 0.0046 26.1 8.6 67 114-206 171-237 (267)
402 cd07578 nitrilase_1_R1 First n 37.4 1.2E+02 0.0026 27.3 6.8 63 110-174 18-85 (258)
403 PF00265 TK: Thymidine kinase; 37.3 56 0.0012 28.7 4.4 62 126-205 76-137 (176)
404 cd07567 biotinidase_like bioti 37.3 76 0.0016 30.2 5.7 62 110-173 25-107 (299)
405 COG1134 TagH ABC-type polysacc 37.3 1.4E+02 0.003 28.2 7.2 62 123-207 162-223 (249)
406 PF02610 Arabinose_Isome: L-ar 37.0 3.1E+02 0.0068 27.2 9.9 78 87-180 33-112 (359)
407 TIGR02562 cas3_yersinia CRISPR 36.9 1.7E+02 0.0037 33.2 8.8 67 93-175 558-632 (1110)
408 cd00739 DHPS DHPS subgroup of 36.8 1.3E+02 0.0029 27.9 7.1 50 122-180 159-210 (257)
409 cd03592 CLECT_selectins_like C 36.7 21 0.00045 28.0 1.5 36 247-282 4-39 (115)
410 PRK14274 phosphate ABC transpo 36.6 2.3E+02 0.0049 25.6 8.5 60 123-206 170-229 (259)
411 cd01713 PAPS_reductase This do 36.5 2.3E+02 0.0049 22.9 8.8 82 97-180 28-118 (173)
412 PRK15177 Vi polysaccharide exp 36.4 1.9E+02 0.0041 25.5 7.8 59 124-206 120-178 (213)
413 COG1674 FtsK DNA segregation A 36.3 40 0.00087 36.8 4.0 49 125-180 638-687 (858)
414 cd07581 nitrilase_3 Uncharacte 36.3 54 0.0012 29.3 4.3 63 110-175 15-82 (255)
415 COG4107 PhnK ABC-type phosphon 36.2 1.2E+02 0.0026 27.9 6.3 76 91-176 131-211 (258)
416 PF01261 AP_endonuc_2: Xylose 36.2 1.6E+02 0.0035 24.6 7.1 65 111-176 70-134 (213)
417 cd02204 PurL_repeat2 PurL subu 36.1 70 0.0015 29.0 5.1 56 114-171 38-93 (264)
418 COG1603 RPP1 RNase P/RNase MRP 36.0 3.2E+02 0.0069 25.5 9.3 87 87-179 65-174 (229)
419 PF12846 AAA_10: AAA-like doma 35.7 52 0.0011 29.5 4.1 67 127-207 221-288 (304)
420 PF00205 TPP_enzyme_M: Thiamin 35.7 42 0.00091 27.3 3.2 53 155-207 27-87 (137)
421 PF15609 PRTase_2: Phosphoribo 35.5 2.4E+02 0.0052 25.6 8.2 62 100-175 125-186 (191)
422 cd04160 Arfrp1 Arfrp1 subfamil 35.0 1.7E+02 0.0036 23.8 6.8 67 97-175 49-115 (167)
423 PRK14249 phosphate ABC transpo 35.0 2.1E+02 0.0046 25.6 8.0 68 114-207 155-222 (251)
424 PRK03906 mannonate dehydratase 34.8 1.3E+02 0.0029 29.8 7.1 64 108-173 39-102 (385)
425 TIGR03522 GldA_ABC_ATP gliding 34.8 2.3E+02 0.005 26.5 8.5 62 123-208 148-209 (301)
426 TIGR00956 3a01205 Pleiotropic 34.8 3.3E+02 0.0072 31.6 11.1 60 124-206 917-978 (1394)
427 cd07574 nitrilase_Rim1_like Un 34.8 1.1E+02 0.0024 27.8 6.2 63 110-174 19-92 (280)
428 PRK14270 phosphate ABC transpo 34.7 2.8E+02 0.006 24.9 8.7 59 124-206 163-221 (251)
429 KOG1321|consensus 34.7 1.1E+02 0.0023 30.4 6.1 74 95-175 160-235 (395)
430 PF13173 AAA_14: AAA domain 34.7 51 0.0011 26.6 3.5 36 126-175 61-97 (128)
431 cd00377 ICL_PEPM Members of th 34.6 2.5E+02 0.0055 25.7 8.5 78 80-176 122-205 (243)
432 cd05569 PTS_IIB_fructose PTS_I 34.6 85 0.0018 24.7 4.7 47 155-208 17-64 (96)
433 PRK14243 phosphate transporter 34.5 2.6E+02 0.0056 25.4 8.6 66 114-205 159-224 (264)
434 cd00950 DHDPS Dihydrodipicolin 34.5 2.7E+02 0.0059 25.6 8.8 68 97-177 69-136 (284)
435 cd00396 PurM-like AIR (aminoim 34.3 60 0.0013 28.7 4.2 53 114-172 25-77 (222)
436 PRK14239 phosphate transporter 34.2 2.9E+02 0.0062 24.7 8.7 67 114-206 156-222 (252)
437 PRK10744 pstB phosphate transp 34.0 2.7E+02 0.0059 25.2 8.6 60 123-206 171-230 (260)
438 PRK00074 guaA GMP synthase; Re 33.9 3.4E+02 0.0075 27.8 10.1 145 18-178 168-327 (511)
439 cd03271 ABC_UvrA_II The excisi 33.8 1.9E+02 0.0042 26.9 7.7 71 112-206 175-246 (261)
440 COG1335 PncA Amidases related 33.8 1.1E+02 0.0023 26.6 5.6 48 127-175 6-57 (205)
441 cd03270 ABC_UvrA_I The excisio 33.8 2E+02 0.0043 25.7 7.5 71 113-207 144-214 (226)
442 PRK00043 thiE thiamine-phospha 33.6 2.4E+02 0.0052 24.3 7.9 66 99-175 8-73 (212)
443 PRK10342 glycerate kinase I; P 33.5 48 0.001 33.0 3.8 60 110-178 268-327 (381)
444 cd03250 ABCC_MRP_domain1 Domai 33.3 3.2E+02 0.0069 23.6 9.0 58 124-205 143-201 (204)
445 cd07575 Xc-1258_like Xanthomon 33.3 78 0.0017 28.5 4.9 58 110-171 18-77 (252)
446 PRK14247 phosphate ABC transpo 33.3 3E+02 0.0064 24.6 8.7 68 113-206 153-220 (250)
447 PRK14259 phosphate ABC transpo 33.1 2.2E+02 0.0048 26.1 7.9 59 124-206 170-228 (269)
448 PRK09331 Sep-tRNA:Cys-tRNA syn 33.0 2E+02 0.0043 27.7 7.9 56 106-172 136-193 (387)
449 cd07573 CPA N-carbamoylputresc 33.0 1.3E+02 0.0029 27.3 6.4 61 110-172 17-84 (284)
450 cd01822 Lysophospholipase_L1_l 33.0 1.9E+02 0.0041 23.7 6.9 56 110-172 82-140 (177)
451 TIGR01370 cysRS possible cyste 32.9 2.3E+02 0.0049 27.5 8.1 65 114-180 149-216 (315)
452 TIGR00268 conserved hypothetic 32.9 83 0.0018 28.9 5.0 80 110-190 50-132 (252)
453 PRK14262 phosphate ABC transpo 32.9 2.8E+02 0.0061 24.7 8.4 68 114-207 154-221 (250)
454 cd01863 Rab18 Rab18 subfamily. 32.8 1.8E+02 0.0039 23.4 6.6 65 99-175 50-114 (161)
455 PF02633 Creatininase: Creatin 32.8 1.6E+02 0.0035 26.6 6.8 39 99-138 102-141 (237)
456 cd03243 ABC_MutS_homologs The 32.7 2.2E+02 0.0048 24.7 7.5 24 11-34 28-51 (202)
457 PRK09536 btuD corrinoid ABC tr 32.7 2.1E+02 0.0046 28.4 8.2 69 114-207 147-215 (402)
458 TIGR00250 RNAse_H_YqgF RNAse H 32.7 2.3E+02 0.005 23.6 7.3 55 113-173 35-89 (130)
459 PRK14086 dnaA chromosomal repl 32.7 2E+02 0.0043 30.6 8.2 42 126-175 377-418 (617)
460 COG2109 BtuR ATP:corrinoid ade 32.6 69 0.0015 29.2 4.2 54 113-174 109-162 (198)
461 PRK14253 phosphate ABC transpo 32.6 2.9E+02 0.0063 24.7 8.5 66 115-206 154-219 (249)
462 cd06591 GH31_xylosidase_XylS X 32.6 99 0.0021 29.4 5.6 64 109-177 21-89 (319)
463 cd03217 ABC_FeS_Assembly ABC-t 32.6 3.2E+02 0.007 23.6 8.6 67 115-206 113-180 (200)
464 TIGR02324 CP_lyasePhnL phospho 32.6 3.4E+02 0.0074 23.7 9.3 53 114-177 157-209 (224)
465 PRK13753 dihydropteroate synth 32.5 1.6E+02 0.0035 28.1 7.0 53 122-180 160-214 (279)
466 TIGR00315 cdhB CO dehydrogenas 32.5 46 0.001 29.2 3.1 54 154-209 42-112 (162)
467 cd00267 ABC_ATPase ABC (ATP-bi 32.4 2.8E+02 0.0062 22.8 8.4 56 112-178 86-141 (157)
468 PRK06455 riboflavin synthase; 32.4 3.5E+02 0.0075 23.8 9.1 69 98-175 31-100 (155)
469 cd01821 Rhamnogalacturan_acety 32.3 1.1E+02 0.0023 26.3 5.3 49 123-173 104-152 (198)
470 TIGR03381 agmatine_aguB N-carb 32.3 1.5E+02 0.0034 26.7 6.7 62 110-173 17-85 (279)
471 PRK09112 DNA polymerase III su 32.2 1E+02 0.0022 30.0 5.8 60 108-178 120-183 (351)
472 PRK09932 glycerate kinase II; 32.2 59 0.0013 32.4 4.1 60 110-178 268-327 (381)
473 cd01838 Isoamyl_acetate_hydrol 32.1 1.8E+02 0.0039 24.2 6.7 47 125-171 106-160 (199)
474 COG1122 CbiO ABC-type cobalt t 32.1 81 0.0018 29.1 4.8 63 122-206 152-214 (235)
475 cd07197 nitrilase Nitrilase su 32.0 86 0.0019 27.6 4.9 64 110-175 16-84 (253)
476 PRK04195 replication factor C 32.0 3.3E+02 0.007 27.5 9.5 68 99-175 66-138 (482)
477 PRK09490 metH B12-dependent me 32.0 1.5E+02 0.0032 34.1 7.6 63 108-172 494-563 (1229)
478 PRK00979 tetrahydromethanopter 31.8 1.9E+02 0.0042 28.0 7.4 60 108-177 159-229 (308)
479 PF01637 Arch_ATPase: Archaeal 31.8 2E+02 0.0043 24.4 7.0 59 113-174 105-163 (234)
480 PRK14263 phosphate ABC transpo 31.7 3E+02 0.0064 25.1 8.5 66 115-206 158-223 (261)
481 TIGR03614 RutB pyrimidine util 31.7 1.3E+02 0.0027 27.1 5.9 51 126-176 15-71 (226)
482 cd01839 SGNH_arylesterase_like 31.6 1.4E+02 0.003 25.7 6.0 47 126-172 125-174 (208)
483 cd03249 ABC_MTABC3_MDL1_MDL2 M 31.6 3.6E+02 0.0079 23.8 9.1 60 123-207 154-213 (238)
484 cd07568 ML_beta-AS_like mammal 31.6 1.2E+02 0.0026 27.7 5.9 62 111-174 29-97 (287)
485 TIGR00955 3a01204 The Eye Pigm 31.4 1.1E+02 0.0023 32.0 6.1 69 113-206 173-242 (617)
486 PRK14255 phosphate ABC transpo 31.4 3.5E+02 0.0076 24.2 8.8 59 124-206 164-222 (252)
487 PRK13695 putative NTPase; Prov 31.4 92 0.002 26.4 4.8 43 125-178 95-137 (174)
488 cd03228 ABCC_MRP_Like The MRP 31.3 3.2E+02 0.0069 23.0 8.2 64 115-205 105-168 (171)
489 PRK14251 phosphate ABC transpo 31.3 2E+02 0.0042 25.8 7.1 67 114-206 155-221 (251)
490 PRK14271 phosphate ABC transpo 31.2 2.7E+02 0.0057 25.7 8.1 59 124-206 179-237 (276)
491 COG1623 Predicted nucleic-acid 31.2 29 0.00063 33.7 1.7 95 98-200 54-155 (349)
492 cd03254 ABCC_Glucan_exporter_l 31.1 3E+02 0.0066 24.1 8.2 58 124-206 155-212 (229)
493 PRK07535 methyltetrahydrofolat 31.1 2.2E+02 0.0049 26.5 7.6 75 122-203 147-227 (261)
494 TIGR00045 glycerate kinase. Th 30.9 74 0.0016 31.6 4.6 60 110-178 267-326 (375)
495 COG1929 Glycerate kinase [Carb 30.8 59 0.0013 32.3 3.8 58 110-176 268-325 (378)
496 PF02571 CbiJ: Precorrin-6x re 30.8 1.3E+02 0.0028 27.9 6.0 27 161-187 213-239 (249)
497 PTZ00293 thymidine kinase; Pro 30.8 94 0.002 28.4 4.9 62 125-205 76-137 (211)
498 cd01018 ZntC Metal binding pro 30.7 2.6E+02 0.0057 25.6 8.0 25 109-134 201-225 (266)
499 cd03602 CLECT_1 C-type lectin 30.7 31 0.00068 26.7 1.6 32 250-281 7-38 (108)
500 PF03279 Lip_A_acyltrans: Bact 30.7 2.7E+02 0.0059 25.6 8.2 127 4-175 112-239 (295)
No 1
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-46 Score=368.62 Aligned_cols=205 Identities=14% Similarity=0.139 Sum_probs=184.2
Q ss_pred HHHHHHHH-cCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHhh
Q psy4520 3 EYSLDLAL-QGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVR 78 (291)
Q Consensus 3 q~al~la~-qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (291)
.+|.|+|. ++.+|++||+||+.+|+++|||+..++++..... ...++|
T Consensus 215 nia~n~a~~~~~~v~iFSLEM~~eql~~R~Ls~~s~v~~~kirtg~l~~~d~---------------------------- 266 (435)
T COG0305 215 NIALNAAADGRKPVAIFSLEMSEEQLVMRLLSSESGIESSKLRTGRLSDDEW---------------------------- 266 (435)
T ss_pred HHHHHHHHhcCCCeEEEEccCCHHHHHHHhhccccccchhccccccccHHHH----------------------------
Confidence 45666663 7889999999999999999999999999987653 345566
Q ss_pred ccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHH
Q psy4520 79 KPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQE 158 (291)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~ 158 (291)
+++..|++.+.+.||||+|+++ .++.+|++++|++++++|+++++|||||+|.+.+ ..++|.+++++|+++
T Consensus 267 -------~~l~~a~~~l~~~~i~IdD~~~-~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~-~~~~r~qevs~iSr~ 337 (435)
T COG0305 267 -------ERLIKAASELSEAPIFIDDTPG-LTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGK-KSENRKQEVSEISRS 337 (435)
T ss_pred -------HHHHHHHHHHhhCCeeecCCCc-CCHHHHHHHHHHHHHhcCccEEEEEEEEeecccc-cchhHHHHHHHHHHH
Confidence 7888899999999999999999 5999999999999999999999999999998765 347999999999999
Q ss_pred HHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCcc----ccccceEEEEecccCCCCc
Q psy4520 159 FRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQ----NLELKKFLQALPIERCPQF 229 (291)
Q Consensus 159 LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~----~~~~~~~l~I~KnR~~~~~ 229 (291)
||.||||++|||++++| +|.+| |||+|||||+||+||||||+|+||||+++. +..+.+++||+|||
T Consensus 338 LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLRESGsIEQDAD~VmflyRde~y~~~~~~~g~aeiIi~K~R----- 412 (435)
T COG0305 338 LKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQDADIVIFLHRDEAYLKDTPDRGEAEVIVAKNR----- 412 (435)
T ss_pred HHHHHHhcCCcEEehhhhcccchhccccCCccccCccCCchhhhCCEEEEEechhhccCCCCCCceEEEEEEecc-----
Confidence 99999999999999999 99998 899999999999999999999999999863 23366789999985
Q ss_pred cCCCCCC-ceeeeceEeEEeeC
Q psy4520 230 RDQPPGS-TATYNGKCYIFYNR 250 (291)
Q Consensus 230 R~g~~G~-~l~f~g~~~~f~~~ 250 (291)
|||+|+ .+.|++.+++|-|.
T Consensus 413 -nGp~GtV~l~f~~~~~~F~~~ 433 (435)
T COG0305 413 -NGPTGTVKLAFDPQFTKFKNL 433 (435)
T ss_pred -CCCCceEEEEEeccccccccc
Confidence 999999 99999999999775
No 2
>PRK08006 replicative DNA helicase; Provisional
Probab=100.00 E-value=7.7e-46 Score=367.69 Aligned_cols=212 Identities=18% Similarity=0.139 Sum_probs=183.0
Q ss_pred HHHHHHH-HcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHhh
Q psy4520 3 EYSLDLA-LQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVR 78 (291)
Q Consensus 3 q~al~la-~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (291)
++|.++| .+|++|++||+||+.+++++||+++.++++..... ...++|
T Consensus 243 nia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~---------------------------- 294 (471)
T PRK08006 243 NLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDW---------------------------- 294 (471)
T ss_pred HHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHH----------------------------
Confidence 5667776 47999999999999999999999999999987653 223445
Q ss_pred ccchhhhhhHHHHHHhh-cCCCeEEEcCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeccccccCCCCCCccHHHHHHHHH
Q psy4520 79 KPLLDNLDKFDEYSDWF-KTLPMYFLTFHGPQPLKLVMEAVEHAMYVY-DTGHVIIDNVQFMLGLSDSALDRFYMQDTII 156 (291)
Q Consensus 79 ~~~~~~~~~~~~a~~~~-~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~-gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~ 156 (291)
.++..+.+++ .+.|+||+|.++ .++.+|++++|++++++ |+++|||||||+|.... ...++++++++|+
T Consensus 295 -------~~~~~a~~~~~~~~~l~I~d~~~-~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~-~~~~r~~ei~~is 365 (471)
T PRK08006 295 -------ARISGTMGILLEKRNMYIDDSSG-LTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPS-LSDNRTLEIAEIS 365 (471)
T ss_pred -------HHHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCC-CCCCcHHHHHHHH
Confidence 6677788887 789999999887 69999999999998888 69999999999986543 2357889999999
Q ss_pred HHHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCccc----cccceEEEEecccCCC
Q psy4520 157 QEFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQN----LELKKFLQALPIERCP 227 (291)
Q Consensus 157 r~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~----~~~~~~l~I~KnR~~~ 227 (291)
|+||.||||+|||||+||| +|.+| |||.||||||||+||||||+|+||||+++.+ ..+.++|+|+|||
T Consensus 366 r~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~g~~elivaKnR--- 442 (471)
T PRK08006 366 RSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQR--- 442 (471)
T ss_pred HHHHHHHHHhCCeEEEEEecCccccccCCCCCchhhhhhcCcccccCCEEEEEecccccccccCCCCceEEEEeccc---
Confidence 9999999999999999999 99987 7999999999999999999999999997532 2356889999985
Q ss_pred CccCCCCCC-ceeeeceEeEEeeCCCCchhh
Q psy4520 228 QFRDQPPGS-TATYNGKCYIFYNRRPMNLRD 257 (291)
Q Consensus 228 ~~R~g~~G~-~l~f~g~~~~f~~~~~~~~~~ 257 (291)
|||+|+ .+.|++++++|.+.....|-|
T Consensus 443 ---~G~~G~v~l~f~~~~~~f~~~~~p~~~~ 470 (471)
T PRK08006 443 ---NGPIGTVRLTFNGQWSRFDNYAGPQYDD 470 (471)
T ss_pred ---CCCCceEEEEEccCcccccCCCcCCCCC
Confidence 899999 999999999999887666543
No 3
>PRK08840 replicative DNA helicase; Provisional
Probab=100.00 E-value=9.1e-46 Score=366.59 Aligned_cols=212 Identities=17% Similarity=0.130 Sum_probs=182.1
Q ss_pred HHHHHHH-HcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHhh
Q psy4520 3 EYSLDLA-LQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVR 78 (291)
Q Consensus 3 q~al~la-~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (291)
++|.++| .+|++|++||+||+.+|+++||+++.++++..... ...++|
T Consensus 236 nia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~---------------------------- 287 (464)
T PRK08840 236 NLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDEDW---------------------------- 287 (464)
T ss_pred HHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHHhcCCCCHHHH----------------------------
Confidence 5667776 47999999999999999999999999999887543 223445
Q ss_pred ccchhhhhhHHHHHHhh-cCCCeEEEcCCCCCCHHHHHHHHHHHHHhCC-CcEEEEeccccccCCCCCCccHHHHHHHHH
Q psy4520 79 KPLLDNLDKFDEYSDWF-KTLPMYFLTFHGPQPLKLVMEAVEHAMYVYD-TGHVIIDNVQFMLGLSDSALDRFYMQDTII 156 (291)
Q Consensus 79 ~~~~~~~~~~~~a~~~~-~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~g-v~lviIDyLqlm~~~~~~~~~r~~~~~~i~ 156 (291)
+++..+.+++ ...|+||+|.++ .++.+|++++|++++++| +++|||||||+|...+ ...++++++++|+
T Consensus 288 -------~~~~~a~~~l~~~~~l~I~d~~~-~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~-~~~~r~~ei~~is 358 (464)
T PRK08840 288 -------ARISSTMGILMEKKNMYIDDSSG-LTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPA-LSDNRTLEIAEIS 358 (464)
T ss_pred -------HHHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCC-CCCchHHHHHHHH
Confidence 6677788888 578999999887 689999999999998875 9999999999996433 2357889999999
Q ss_pred HHHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCccc----cccceEEEEecccCCC
Q psy4520 157 QEFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQN----LELKKFLQALPIERCP 227 (291)
Q Consensus 157 r~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~----~~~~~~l~I~KnR~~~ 227 (291)
++||.||||+||||++||| ||.+| |||.++||||||+||||||+|+||||+++.+ ..+.++|+|+|||
T Consensus 359 r~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~~~~elivaKnR--- 435 (464)
T PRK08840 359 RSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNPDSPLKGTAEIIIGKQR--- 435 (464)
T ss_pred HHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEecccccCCCcCCCCceEEEEeccc---
Confidence 9999999999999999999 99987 7899999999999999999999999997521 2356889999985
Q ss_pred CccCCCCCC-ceeeeceEeEEeeCCCCchhh
Q psy4520 228 QFRDQPPGS-TATYNGKCYIFYNRRPMNLRD 257 (291)
Q Consensus 228 ~~R~g~~G~-~l~f~g~~~~f~~~~~~~~~~ 257 (291)
|||+|+ .+.|++++.+|.+.....|-|
T Consensus 436 ---~G~~G~v~l~f~~~~~~f~~~~~~~~~~ 463 (464)
T PRK08840 436 ---NGPIGSVRLTFQGQYSRFDNYAGPAFDD 463 (464)
T ss_pred ---CCCCceEEEEEecCcccccCCCCCCCCC
Confidence 899999 999999999999987666643
No 4
>PRK07004 replicative DNA helicase; Provisional
Probab=100.00 E-value=2.4e-45 Score=363.12 Aligned_cols=206 Identities=17% Similarity=0.113 Sum_probs=180.7
Q ss_pred HHHHHHH-HcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHhh
Q psy4520 3 EYSLDLA-LQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVR 78 (291)
Q Consensus 3 q~al~la-~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (291)
+++.++| .+|++|++||+||+++|++.||++..++++.+... ...++|
T Consensus 232 ~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~---------------------------- 283 (460)
T PRK07004 232 NIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDW---------------------------- 283 (460)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHH----------------------------
Confidence 5677776 47999999999999999999999999999887543 233445
Q ss_pred ccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCC-CcEEEEeccccccCCCCCCccHHHHHHHHHH
Q psy4520 79 KPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYD-TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQ 157 (291)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~g-v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r 157 (291)
.++..+.+++.++|+||+|+++ .++.+|++++|++++++| +++|||||||+|.... ...++++++++|++
T Consensus 284 -------~~~~~a~~~l~~~~l~I~d~~~-~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~-~~~~r~~ei~~Isr 354 (460)
T PRK07004 284 -------PKLTHAVQKMSEAQLFIDETGG-LNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSS-QGENRATEISEISR 354 (460)
T ss_pred -------HHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCC-CCCcHHHHHHHHHH
Confidence 6788899999999999999987 699999999999988875 9999999999997543 34688999999999
Q ss_pred HHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCcc----ccccceEEEEecccCCCC
Q psy4520 158 EFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQ----NLELKKFLQALPIERCPQ 228 (291)
Q Consensus 158 ~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~----~~~~~~~l~I~KnR~~~~ 228 (291)
+||.||||+|||||++|| ||.++ +||.|+||||||+||||||+|+||||+++. +..+.++|+|+|||
T Consensus 355 ~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~v~~l~R~~~y~~~~~~~g~~e~ivaKnR---- 430 (460)
T PRK07004 355 SLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTAEIIIGKQR---- 430 (460)
T ss_pred HHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCCEEEEeccccccCCCcCCCCceEEEEEccC----
Confidence 999999999999999999 99887 799999999999999999999999999852 22356889999985
Q ss_pred ccCCCCCC-ceeeeceEeEEeeCC
Q psy4520 229 FRDQPPGS-TATYNGKCYIFYNRR 251 (291)
Q Consensus 229 ~R~g~~G~-~l~f~g~~~~f~~~~ 251 (291)
|||+|+ .+.|++++++|.|..
T Consensus 431 --~G~~G~v~l~f~~~~~~F~~~~ 452 (460)
T PRK07004 431 --NGPIGPVRLTFLGQYTKFDNFA 452 (460)
T ss_pred --CCCCceEEEEEecCCCcccCCC
Confidence 899999 999999999998864
No 5
>PRK06749 replicative DNA helicase; Provisional
Probab=100.00 E-value=5.4e-45 Score=357.90 Aligned_cols=206 Identities=14% Similarity=0.130 Sum_probs=178.4
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc-----ccccchhhhhccccccccccCCCCchhHHHHH
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL-----DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEL 76 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 76 (291)
.+++.++|.+|.+|++||+||+++|++.||+++.++++..... ...++|
T Consensus 204 l~ia~~~a~~g~~v~~fSlEMs~~ql~~R~ls~~~~i~~~~l~~~~~~l~~~e~-------------------------- 257 (428)
T PRK06749 204 LNVGLHAAKSGAAVGLFSLEMSSKQLLKRMASCVGEVSGGRLKNPKHRFAMEDW-------------------------- 257 (428)
T ss_pred HHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHhccCCCHHHHhcCcccCCHHHH--------------------------
Confidence 3677888889999999999999999999999999999877542 123344
Q ss_pred hhccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCC--cEEEEeccccccCCCCCCccHHHHHHH
Q psy4520 77 VRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDT--GHVIIDNVQFMLGLSDSALDRFYMQDT 154 (291)
Q Consensus 77 ~~~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv--~lviIDyLqlm~~~~~~~~~r~~~~~~ 154 (291)
+++..+..++.++||||+|.++ .++++|++++|++++++|. ++|||||||+|.+......++++++++
T Consensus 258 ---------~~~~~a~~~l~~~~i~i~d~~~-~t~~~I~~~~r~~~~~~~~~~~lvvIDyLqli~~~~~~~~~r~~ei~~ 327 (428)
T PRK06749 258 ---------EKVSKAFAEIGELPLEIYDNAG-VTVQDIWMQTRKLKRKHGDKKILIIVDYLQLITGDPKHKGNRFQEISE 327 (428)
T ss_pred ---------HHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCcEEEEeChhhcCCCCCCCCCHHHHHHH
Confidence 6777889999999999999988 6899999999999999984 499999999987532223578899999
Q ss_pred HHHHHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCccc----cccceEEEEecccC
Q psy4520 155 IIQEFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQN----LELKKFLQALPIER 225 (291)
Q Consensus 155 i~r~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~----~~~~~~l~I~KnR~ 225 (291)
|++.||.||||+||||+++|| ||.++ |||.++||||||+|||+||.|+||||+++.+ ..+.++|+|+|||
T Consensus 328 isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqdAD~vl~l~R~~~y~~~~~~~~~~eliiaKnR- 406 (428)
T PRK06749 328 ISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYREDYYDKETMQKEMTEIHVAKHR- 406 (428)
T ss_pred HHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEeecccccccccCCCceEEEEecCC-
Confidence 999999999999999999999 99987 7999999999999999999999999998531 2356899999985
Q ss_pred CCCccCCCCCC-ceeeeceEeEEee
Q psy4520 226 CPQFRDQPPGS-TATYNGKCYIFYN 249 (291)
Q Consensus 226 ~~~~R~g~~G~-~l~f~g~~~~f~~ 249 (291)
|||+|+ .+.|++++++|.+
T Consensus 407 -----~G~~G~v~~~f~~~~~~f~~ 426 (428)
T PRK06749 407 -----NGPVGSFKLRFLKEFGRFVE 426 (428)
T ss_pred -----CCCCceEEEEEecCcccccC
Confidence 899999 8889988888865
No 6
>PRK05636 replicative DNA helicase; Provisional
Probab=100.00 E-value=6.8e-45 Score=363.54 Aligned_cols=207 Identities=11% Similarity=0.084 Sum_probs=180.7
Q ss_pred HHHHHHH-HcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHhh
Q psy4520 3 EYSLDLA-LQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVR 78 (291)
Q Consensus 3 q~al~la-~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (291)
+++.++| ++|++|++||+||+.+|++.|+++..+++++.... ...++|
T Consensus 284 ~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~---------------------------- 335 (505)
T PRK05636 284 DFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAW---------------------------- 335 (505)
T ss_pred HHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHH----------------------------
Confidence 4566666 46999999999999999999999999999887643 223444
Q ss_pred ccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHH
Q psy4520 79 KPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQE 158 (291)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~ 158 (291)
+++..+.+++.+.||||+|.++ .++++|++++|++++++|+++|||||||+|.... ...++.+++++|+++
T Consensus 336 -------~~~~~a~~~l~~~~l~I~d~~~-~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~~-~~~~r~~ei~~isr~ 406 (505)
T PRK05636 336 -------EKLVQRLGKIAQAPIFIDDSAN-LTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSGK-RVESRQQEVSEFSRQ 406 (505)
T ss_pred -------HHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCC-CCCcHHHHHHHHHHH
Confidence 6778889999999999999887 6999999999999999999999999999986432 335788999999999
Q ss_pred HHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCccc----cccceEEEEecccCCCCc
Q psy4520 159 FRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQN----LELKKFLQALPIERCPQF 229 (291)
Q Consensus 159 LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~----~~~~~~l~I~KnR~~~~~ 229 (291)
||.||||+|||||+||| ||.++ |||.|+||||||+|||+||+|+||||+++.+ ..+.++|+|+|||
T Consensus 407 LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~vl~l~R~~~y~~~~~~~g~~elivaK~R----- 481 (505)
T PRK05636 407 LKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPDSQDKDDERAGEADIILAKHR----- 481 (505)
T ss_pred HHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhcccccccCCEEEEEecccccCCccCCCCceEEEEecCC-----
Confidence 99999999999999999 99987 7899999999999999999999999998532 2356899999985
Q ss_pred cCCCCCC-ceeeeceEeEEeeCCC
Q psy4520 230 RDQPPGS-TATYNGKCYIFYNRRP 252 (291)
Q Consensus 230 R~g~~G~-~l~f~g~~~~f~~~~~ 252 (291)
|||+|+ .+.|++++++|.|...
T Consensus 482 -nG~~Gtv~l~f~~~~~rF~~~~~ 504 (505)
T PRK05636 482 -GGPIDTVQVAHQLHYSRFVDMAR 504 (505)
T ss_pred -CCCCceEEEEeecCccccccccC
Confidence 999999 9999999999988653
No 7
>PRK06321 replicative DNA helicase; Provisional
Probab=100.00 E-value=8.3e-45 Score=360.39 Aligned_cols=209 Identities=12% Similarity=0.079 Sum_probs=181.1
Q ss_pred cHHHHHHH-HcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHh
Q psy4520 2 SEYSLDLA-LQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELV 77 (291)
Q Consensus 2 ~q~al~la-~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 77 (291)
.+++.++| .+|++|++||+||+.+++++||+++.++++..... ...++|
T Consensus 244 l~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~--------------------------- 296 (472)
T PRK06321 244 LNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRDF--------------------------- 296 (472)
T ss_pred HHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHH---------------------------
Confidence 35777777 46999999999999999999999999999887543 122344
Q ss_pred hccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCC--CCCccHHHHHHHH
Q psy4520 78 RKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLS--DSALDRFYMQDTI 155 (291)
Q Consensus 78 ~~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~--~~~~~r~~~~~~i 155 (291)
.++..+..++.+.|+||+|.++ .++++|++++|++++++|+++|||||||+|...+ ....++++++++|
T Consensus 297 --------~~~~~a~~~l~~~~~~idd~~~-~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~I 367 (472)
T PRK06321 297 --------QRIVSVVNEMQEHTLLIDDQPG-LKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEI 367 (472)
T ss_pred --------HHHHHHHHHHHcCCEEEeCCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHH
Confidence 6777888999999999999987 5899999999999999999999999999986432 1235788999999
Q ss_pred HHHHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCcc---ccccceEEEEecccCCC
Q psy4520 156 IQEFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQ---NLELKKFLQALPIERCP 227 (291)
Q Consensus 156 ~r~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~---~~~~~~~l~I~KnR~~~ 227 (291)
++.||.||||+||||+++|| ||++| +||.|+||||||+||||||+|+||||+++. +..+.++|+|+|||
T Consensus 368 sr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IEqdAD~v~~l~R~~~y~~~~~~~~~elivaKnR--- 444 (472)
T PRK06321 368 SRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLRREYYDPNDKPGTAELIVAKNR--- 444 (472)
T ss_pred HHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhcccccccCCEEEEEechhhcCCcCCCCceEEEEEecC---
Confidence 99999999999999999999 99998 799999999999999999999999998752 22356899999986
Q ss_pred CccCCCCCC-ceeeeceEeEEeeCCC
Q psy4520 228 QFRDQPPGS-TATYNGKCYIFYNRRP 252 (291)
Q Consensus 228 ~~R~g~~G~-~l~f~g~~~~f~~~~~ 252 (291)
|||+|+ .+.|++++.+|.|...
T Consensus 445 ---~G~~G~v~l~f~~~~~~f~~~~~ 467 (472)
T PRK06321 445 ---HGSIGSVPLVFEKEFARFRNYAA 467 (472)
T ss_pred ---CCCCceEEEEEecCCCcccCccc
Confidence 899999 9999999999988744
No 8
>PRK06904 replicative DNA helicase; Validated
Probab=100.00 E-value=6.5e-44 Score=354.04 Aligned_cols=205 Identities=16% Similarity=0.132 Sum_probs=175.8
Q ss_pred HHHHHHHH-cCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccc----cccchhhhhccccccccccCCCCchhHHHHHh
Q psy4520 3 EYSLDLAL-QGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLD----KFDEYSDWFKTLPMYFLTFHGPQPLKLVMELV 77 (291)
Q Consensus 3 q~al~la~-qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 77 (291)
++|.++|. +|++|++|||||+.++++.||+++.++++...... ..++|
T Consensus 240 nia~~~a~~~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~--------------------------- 292 (472)
T PRK06904 240 NLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDW--------------------------- 292 (472)
T ss_pred HHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHH---------------------------
Confidence 56677774 69999999999999999999999999998876431 23344
Q ss_pred hccchhhhhhHHHHHHhhc-CCCeEEEcCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeccccccCCCCCCccHHHHHHHH
Q psy4520 78 RKPLLDNLDKFDEYSDWFK-TLPMYFLTFHGPQPLKLVMEAVEHAMYVY-DTGHVIIDNVQFMLGLSDSALDRFYMQDTI 155 (291)
Q Consensus 78 ~~~~~~~~~~~~~a~~~~~-~~pl~i~d~~g~~~i~~i~~~~r~~~~~~-gv~lviIDyLqlm~~~~~~~~~r~~~~~~i 155 (291)
+++..+.+++. ..|+||+|.++ .++++|++++|++++++ ++++|||||||+|.... ...++.+++++|
T Consensus 293 --------~~~~~a~~~l~~~~~l~I~d~~~-~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~-~~~~r~~ei~~i 362 (472)
T PRK06904 293 --------AKISSTVGMFKQKPNLYIDDSSG-LTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPG-FEDNRTLEIAEI 362 (472)
T ss_pred --------HHHHHHHHHHhcCCCEEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCC-CCCcHHHHHHHH
Confidence 66777888886 45699999988 58999999999988776 69999999999997543 235788999999
Q ss_pred HHHHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCccc-----cccceEEEEecccC
Q psy4520 156 IQEFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQN-----LELKKFLQALPIER 225 (291)
Q Consensus 156 ~r~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~-----~~~~~~l~I~KnR~ 225 (291)
+++||.||||+|||||+||| ||.+| +||.++||||||+||||||+|+||||+++.+ ..+.++|+|+|||
T Consensus 363 sr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~~~~~elivaKnR- 441 (472)
T PRK06904 363 SRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIYRDEVYNETTEDNKGVAEIIIGKQR- 441 (472)
T ss_pred HHHHHHHHHHhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccCCcEEEEEeccccccCccccCCCceEEEEeccC-
Confidence 99999999999999999999 99887 7999999999999999999999999997521 1356889999985
Q ss_pred CCCccCCCCCC-ceeeeceEeEEeeC
Q psy4520 226 CPQFRDQPPGS-TATYNGKCYIFYNR 250 (291)
Q Consensus 226 ~~~~R~g~~G~-~l~f~g~~~~f~~~ 250 (291)
|||+|+ .+.|++++.+|.|.
T Consensus 442 -----~G~~G~v~l~f~~~~~~f~~~ 462 (472)
T PRK06904 442 -----NGPIGRVRLAFQGQYSRFDNL 462 (472)
T ss_pred -----CCCCceEEEEEccCCCCcccc
Confidence 899999 99999999999875
No 9
>PRK08760 replicative DNA helicase; Provisional
Probab=100.00 E-value=6.7e-44 Score=354.24 Aligned_cols=207 Identities=14% Similarity=0.092 Sum_probs=180.8
Q ss_pred HHHHHHHH-cCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHhh
Q psy4520 3 EYSLDLAL-QGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVR 78 (291)
Q Consensus 3 q~al~la~-qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (291)
++|.++|. +|++|++||+||++++++.||++..++++..... ...++|
T Consensus 248 ~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~---------------------------- 299 (476)
T PRK08760 248 NIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDEDW---------------------------- 299 (476)
T ss_pred HHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHH----------------------------
Confidence 56777774 6999999999999999999999999999887542 223344
Q ss_pred ccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHH
Q psy4520 79 KPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQE 158 (291)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~ 158 (291)
.++..+.+++.++||||+|.++ .++++|++++|++++++|+++|||||||+|.... ...++++++++|+++
T Consensus 300 -------~~~~~a~~~l~~~~l~I~d~~~-~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~-~~~~r~~ei~~Isr~ 370 (476)
T PRK08760 300 -------ARVTGAIKMLKETKIFIDDTPG-VSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPG-NSENRATEISEISRS 370 (476)
T ss_pred -------HHHHHHHHHHhcCCEEEeCCCC-CCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCC-CCcccHHHHHHHHHH
Confidence 6777889999999999999887 6899999999999999999999999999996433 235788999999999
Q ss_pred HHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCccc-----cccceEEEEecccCCCC
Q psy4520 159 FRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQN-----LELKKFLQALPIERCPQ 228 (291)
Q Consensus 159 LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~-----~~~~~~l~I~KnR~~~~ 228 (291)
||.||||+|||||+++| ||.++ +||.|+||||||+|||+||+|+||||+++.+ ..+.++|+|+|||
T Consensus 371 LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~~~~~~~~eliiaKnR---- 446 (476)
T PRK08760 371 LKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDDYYNKENSPDKGLAEIIIGKHR---- 446 (476)
T ss_pred HHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEEechhhcccccccCCCceEEEEEccC----
Confidence 99999999999999999 99887 7999999999999999999999999997522 2356889999985
Q ss_pred ccCCCCCC-ceeeeceEeEEeeCCC
Q psy4520 229 FRDQPPGS-TATYNGKCYIFYNRRP 252 (291)
Q Consensus 229 ~R~g~~G~-~l~f~g~~~~f~~~~~ 252 (291)
|||+|+ .+.|++++++|.|..+
T Consensus 447 --~G~~g~~~l~f~~~~~~f~~~~~ 469 (476)
T PRK08760 447 --GGPTGSCKLKFFGEYTRFDNLAH 469 (476)
T ss_pred --CCCCceEEEEEecCCCceecccc
Confidence 899999 9999999999998744
No 10
>PRK08506 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.3e-43 Score=351.86 Aligned_cols=209 Identities=15% Similarity=0.152 Sum_probs=179.4
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHhh
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVR 78 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (291)
.+++.+++.+|++|++||+||++++++.||+++.+++++.... ...++|
T Consensus 210 l~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~---------------------------- 261 (472)
T PRK08506 210 LNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEW---------------------------- 261 (472)
T ss_pred HHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHH----------------------------
Confidence 4677888889999999999999999999999999999987643 223344
Q ss_pred ccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeccccccCCCCCCccHHHHHHHHHH
Q psy4520 79 KPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVY-DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQ 157 (291)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~-gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r 157 (291)
+++.++.+++.+.|+||+|.++ .++++|++++|++++++ |+++|||||||+|...+ ...++.+++++|++
T Consensus 262 -------~~~~~a~~~l~~~~l~I~d~~~-~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~-~~~~r~~ev~~isr 332 (472)
T PRK08506 262 -------ERLSDACDELSKKKLFVYDSGY-VNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSG-NFKDRHLQISEISR 332 (472)
T ss_pred -------HHHHHHHHHHHcCCeEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCC-CCCCHHHHHHHHHH
Confidence 6777889999999999999866 69999999999998876 59999999999997543 23578899999999
Q ss_pred HHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCccc------------ccc------
Q psy4520 158 EFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQN------------LEL------ 214 (291)
Q Consensus 158 ~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~------------~~~------ 214 (291)
.||.||||+||||++||| ||.++ +||.++||||||+|||+||+|+||||+++.+ .++
T Consensus 333 ~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~~~~~~~~~~~~g~~~~~~ 412 (472)
T PRK08506 333 GLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYKEREEKEKEKKAKKEGKEERRI 412 (472)
T ss_pred HHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcCCEEEEEeccccccccccccccccccccccccccc
Confidence 999999999999999999 99886 7999999999999999999999999986421 011
Q ss_pred --------ceEEEEecccCCCCccCCCCCC-ceeeeceEeEEeeCCCC
Q psy4520 215 --------KKFLQALPIERCPQFRDQPPGS-TATYNGKCYIFYNRRPM 253 (291)
Q Consensus 215 --------~~~l~I~KnR~~~~~R~g~~G~-~l~f~g~~~~f~~~~~~ 253 (291)
.++|+|+||| |||+|+ .+.|++++.+|.|...+
T Consensus 413 ~~~~~~~~~~eliiaKnR------~G~~G~v~l~f~~~~~~f~~~~~~ 454 (472)
T PRK08506 413 HFQNKSIEEAEIIIGKNR------NGPTGTVKLRFQKEFTRFVDKPIE 454 (472)
T ss_pred ccccccccceEEEEecCC------CCCCceEEEEEecCCccccCCCCC
Confidence 3789999985 899999 99999999999886443
No 11
>PRK05595 replicative DNA helicase; Provisional
Probab=100.00 E-value=2.2e-43 Score=347.05 Aligned_cols=206 Identities=16% Similarity=0.136 Sum_probs=179.9
Q ss_pred cHHHHHHH-HcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHh
Q psy4520 2 SEYSLDLA-LQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELV 77 (291)
Q Consensus 2 ~q~al~la-~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 77 (291)
.+++.++| ++|.+|++||+||++++++.|+++..++++..... ...++|
T Consensus 219 l~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~--------------------------- 271 (444)
T PRK05595 219 LNIAEYAALREGKSVAIFSLEMSKEQLAYKLLCSEANVDMLRLRTGNLEDKDW--------------------------- 271 (444)
T ss_pred HHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHH---------------------------
Confidence 35666765 57999999999999999999999999999987642 123344
Q ss_pred hccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHH
Q psy4520 78 RKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQ 157 (291)
Q Consensus 78 ~~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r 157 (291)
.++..+.+++.++|+||+|.++ .++++|++++|+++.++|+++|||||||+|.+.. ...++++++++|++
T Consensus 272 --------~~~~~~~~~l~~~~l~i~d~~~-~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~-~~~~r~~~v~~is~ 341 (444)
T PRK05595 272 --------ENIARASGPLAAAKIFIDDTAG-VSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGK-GSESRQQEVSEISR 341 (444)
T ss_pred --------HHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCC-CCccHHHHHHHHHH
Confidence 5677889999999999999888 6999999999999999999999999999997533 23578899999999
Q ss_pred HHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCccc----cccceEEEEecccCCCC
Q psy4520 158 EFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQN----LELKKFLQALPIERCPQ 228 (291)
Q Consensus 158 ~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~----~~~~~~l~I~KnR~~~~ 228 (291)
.||.||||+||||++++| ||.+| +||.++||||||+|||+||.|+||||+.+.+ ..+.++|+|+|||
T Consensus 342 ~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~AD~vl~l~r~~~~~~~~~~~~~~e~iv~K~R---- 417 (444)
T PRK05595 342 SIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYRDEYYNKETEDKNVAECIIAKQR---- 417 (444)
T ss_pred HHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCCCEEEEEecccccccccCCCCceEEEEEccC----
Confidence 999999999999999999 99887 7899999999999999999999999998532 3456899999985
Q ss_pred ccCCCCCC-ceeeeceEeEEeeC
Q psy4520 229 FRDQPPGS-TATYNGKCYIFYNR 250 (291)
Q Consensus 229 ~R~g~~G~-~l~f~g~~~~f~~~ 250 (291)
|||+|+ .+.|++++.+|.+.
T Consensus 418 --~G~~g~~~~~~~~~~~~f~~~ 438 (444)
T PRK05595 418 --NGPTGTVKLAWLGQYSKFGNL 438 (444)
T ss_pred --CCCCceEEEEEecCCCccccc
Confidence 899999 99999999999875
No 12
>PRK09165 replicative DNA helicase; Provisional
Probab=100.00 E-value=4e-43 Score=350.28 Aligned_cols=199 Identities=16% Similarity=0.171 Sum_probs=174.3
Q ss_pred CCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHhhccchhhhhhH
Q psy4520 12 GVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLLDNLDKF 88 (291)
Q Consensus 12 G~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 88 (291)
|.+|++||+||++++++.|+++..++++..... ...++| +++
T Consensus 260 g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~~~~l~~~e~-----------------------------------~~l 304 (497)
T PRK09165 260 GGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGKISEEDF-----------------------------------EKL 304 (497)
T ss_pred CCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHH-----------------------------------HHH
Confidence 789999999999999999999999999987642 223344 677
Q ss_pred HHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCC-CCccHHHHHHHHHHHHHHHHHhcC
Q psy4520 89 DEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSD-SALDRFYMQDTIIQEFRAFASRSH 167 (291)
Q Consensus 89 ~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~-~~~~r~~~~~~i~r~LK~~Ake~~ 167 (291)
..+..++.++||||+|.++ .++++|++++|++++++|+++|||||||+|..... ...++.++++.|++.||.||||+|
T Consensus 305 ~~a~~~l~~~~l~I~d~~~-~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~LK~lAkel~ 383 (497)
T PRK09165 305 VDASQELQKLPLYIDDTPA-LSISQLRARARRLKRQHGLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQGLKALAKELN 383 (497)
T ss_pred HHHHHHHhcCCeEEeCCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHhccCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Confidence 7889999999999999877 69999999999999999999999999999975432 246788899999999999999999
Q ss_pred ceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCccc---------------------cccceEEEEe
Q psy4520 168 CHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQN---------------------LELKKFLQAL 221 (291)
Q Consensus 168 VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~---------------------~~~~~~l~I~ 221 (291)
|||++++| ||.++ +||.|+||||||+|||+||+|+||||+++.+ ..+.++|+|+
T Consensus 384 ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~iva 463 (497)
T PRK09165 384 IPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQDADVVMFVYREEYYLKRKEPREGTPKHEEWQEKMEKVHNKAEVIIA 463 (497)
T ss_pred CeEEEeecccchhhccCCCCCchhhhhhccchhccCCEEEEEeehhhhccccccccccchhhhhhhhhcccCCceEEEEe
Confidence 99999999 99987 7999999999999999999999999986421 1256889999
Q ss_pred cccCCCCccCCCCCC-ceeeeceEeEEeeCCC
Q psy4520 222 PIERCPQFRDQPPGS-TATYNGKCYIFYNRRP 252 (291)
Q Consensus 222 KnR~~~~~R~g~~G~-~l~f~g~~~~f~~~~~ 252 (291)
||| |||+|+ .+.|++.+++|.|...
T Consensus 464 KnR------~G~~g~~~~~f~~~~~~f~~~~~ 489 (497)
T PRK09165 464 KQR------HGPTGTVKLAFESEFTRFGDLAD 489 (497)
T ss_pred ccC------CCCCeeEEEEEecCCCcccCccc
Confidence 985 899999 9999999999988753
No 13
>PHA02542 41 41 helicase; Provisional
Probab=100.00 E-value=1e-41 Score=338.47 Aligned_cols=208 Identities=14% Similarity=0.091 Sum_probs=173.6
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc-ccccchhhhhccccccccccCCCCchhHHHHHhhcc
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL-DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKP 80 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (291)
.++|.++|.+|.+|++|||||+..+++.||++..++++++... ...++|
T Consensus 208 lniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl~a~~~~i~~~~l~~l~~~~~------------------------------ 257 (473)
T PHA02542 208 CSLAADYLQQGYNVLYISMEMAEEVIAKRIDANLLDVSLDDIDDLSKAEY------------------------------ 257 (473)
T ss_pred HHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCCHHHHhhcCHHHH------------------------------
Confidence 3567777788999999999999999999999999999987653 223445
Q ss_pred chhhhhhHHHHHHhhcCCCeEEEcC-CCCCCHHHHHHHHHHHHHhCC--CcEEEEeccccccCCC--CCCccHHHHHHHH
Q psy4520 81 LLDNLDKFDEYSDWFKTLPMYFLTF-HGPQPLKLVMEAVEHAMYVYD--TGHVIIDNVQFMLGLS--DSALDRFYMQDTI 155 (291)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~pl~i~d~-~g~~~i~~i~~~~r~~~~~~g--v~lviIDyLqlm~~~~--~~~~~r~~~~~~i 155 (291)
.++..+...+...||||++. ++..++.++++++|++++++| +++|||||||+|.+.. ....++++++++|
T Consensus 258 -----~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~I 332 (473)
T PHA02542 258 -----KAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVSSENSYTYVKAI 332 (473)
T ss_pred -----HHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCCCCChHHHHHHH
Confidence 44455667777889977753 234689999999999988777 9999999999996431 1236899999999
Q ss_pred HHHHHHHHHhcCceEEEEec-cCCcC--CCCccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCC
Q psy4520 156 IQEFRAFASRSHCHVTLVIH-PRKEN--EQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQ 232 (291)
Q Consensus 156 ~r~LK~~Ake~~VpVilvsh-pRk~e--k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g 232 (291)
+|.||.||||+|||||++|| ||.+| ..|+++||||||+|||+||+|+||||+++....+.++|+|+||| ||
T Consensus 333 sr~LK~lAkel~vpVi~lsQLnR~~e~r~dP~lsDLreSG~IEqdAD~vl~l~r~~~~~~~~~~eliv~KnR------~G 406 (473)
T PHA02542 333 AEELRGLAVEHDVVVWTAAQTTRSGWDSSDVDMSDTAESAGLPATADFMLAVIETEELAQMGQQLVKQLKSR------YG 406 (473)
T ss_pred HHHHHHHHHHhCCeEEEEEeeCccccccCCCcchhcccccchHhhcCEEEEEecCcccccCCeEEEEEecCC------CC
Confidence 99999999999999999999 99998 34999999999999999999999999987544577899999986 89
Q ss_pred CCC---C-ceeeeceEeEEeeC
Q psy4520 233 PPG---S-TATYNGKCYIFYNR 250 (291)
Q Consensus 233 ~~G---~-~l~f~g~~~~f~~~ 250 (291)
|+| + .+.|++++++|+|.
T Consensus 407 ~~g~~g~v~l~f~~~~~~F~~~ 428 (473)
T PHA02542 407 DKNKFNKFLMGVDKGNQRWYDV 428 (473)
T ss_pred CCCCceEEEEEEECCcCccccc
Confidence 988 5 77788888888774
No 14
>PRK05748 replicative DNA helicase; Provisional
Probab=100.00 E-value=9.8e-42 Score=335.33 Aligned_cols=208 Identities=15% Similarity=0.112 Sum_probs=179.4
Q ss_pred cHHHHHHH-HcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHh
Q psy4520 2 SEYSLDLA-LQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELV 77 (291)
Q Consensus 2 ~q~al~la-~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 77 (291)
.+++.++| ++|.+|++||+||++++++.||++..++++..... ....+|
T Consensus 221 l~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~--------------------------- 273 (448)
T PRK05748 221 LNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDW--------------------------- 273 (448)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHH---------------------------
Confidence 36777877 46999999999999999999999999998876432 223344
Q ss_pred hccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeccccccCCCCCCccHHHHHHHHH
Q psy4520 78 RKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVY-DTGHVIIDNVQFMLGLSDSALDRFYMQDTII 156 (291)
Q Consensus 78 ~~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~-gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~ 156 (291)
.++..+.+.+.++|+||+|.++ .++++|++++|++++++ ++++|||||||+|......+.++++++++|+
T Consensus 274 --------~~~~~a~~~l~~~~~~i~d~~~-~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~ 344 (448)
T PRK05748 274 --------PKLTIAMGSLSDAPIYIDDTPG-IKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEIS 344 (448)
T ss_pred --------HHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHH
Confidence 6777889999999999999887 69999999999999998 7999999999999643323357889999999
Q ss_pred HHHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCccc----cccceEEEEecccCCC
Q psy4520 157 QEFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQN----LELKKFLQALPIERCP 227 (291)
Q Consensus 157 r~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~----~~~~~~l~I~KnR~~~ 227 (291)
+.||.||||+||||++++| ||.++ ++|.++||||||+|||+||.|++|||+++.+ ..+.++|+|+|||
T Consensus 345 ~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r~~~~~~~~~~~~~~e~~v~K~R--- 421 (448)
T PRK05748 345 RSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRDDYYDEETENKNTIEIIIAKQR--- 421 (448)
T ss_pred HHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEEecccccCccccCCCceEEEEeccC---
Confidence 9999999999999999999 99765 7999999999999999999999999998532 2356889999985
Q ss_pred CccCCCCCC-ceeeeceEeEEeeCC
Q psy4520 228 QFRDQPPGS-TATYNGKCYIFYNRR 251 (291)
Q Consensus 228 ~~R~g~~G~-~l~f~g~~~~f~~~~ 251 (291)
||++|+ .+.|++++.+|.+..
T Consensus 422 ---~G~~g~~~~~~~~~~~~f~~~~ 443 (448)
T PRK05748 422 ---NGPVGTVELAFQKEYNKFVNLA 443 (448)
T ss_pred ---CCCCceEEEEEeCCCCcccccc
Confidence 899999 999999999998753
No 15
>KOG2373|consensus
Probab=100.00 E-value=1.4e-42 Score=329.47 Aligned_cols=197 Identities=53% Similarity=0.808 Sum_probs=180.1
Q ss_pred CcHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhcc
Q psy4520 1 MSEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKP 80 (291)
Q Consensus 1 l~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (291)
||||+||+|.||++|+|+|+||++++|+++||.|++|.++....++...|||+|+++|+|||+|||+++
T Consensus 290 lsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y~HWadrFErlplyfmtfhgqq~----------- 358 (514)
T KOG2373|consen 290 LSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSYKHWADRFERLPLYFMTFHGQQF----------- 358 (514)
T ss_pred ehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHccCchHhhhhhhhHHHHHHhccchHhhhhcccch-----------
Confidence 699999999999999999999999999999999999999988778888999999999999999999966
Q ss_pred chhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHH
Q psy4520 81 LLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFR 160 (291)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK 160 (291)
++-+++.+.++++.|+|.||||||||+|.+.+....|+...|+.|+..++
T Consensus 359 ------------------------------~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~Drf~~QD~iig~fR 408 (514)
T KOG2373|consen 359 ------------------------------MEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMALDRFHLQDRIIGYFR 408 (514)
T ss_pred ------------------------------HHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhccchhhhHHHHHHHHH
Confidence 34455666677889999999999999999876556799999999999999
Q ss_pred HHHHhcCceEEEEeccCCcC--CCCccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC-c
Q psy4520 161 AFASRSHCHVTLVIHPRKEN--EQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS-T 237 (291)
Q Consensus 161 ~~Ake~~VpVilvshpRk~e--k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~-~ 237 (291)
+||.++||||++|.||||.+ +..+.+++.||++.+|+||||++|++.+.....++++++|+||| | .|..|. .
T Consensus 409 ~fAT~nn~HvTlVvHPRKed~d~El~t~s~fGsAkatQEADNVliiQdkrl~~~rgkkyLqi~KNR----y-~Gdvg~~p 483 (514)
T KOG2373|consen 409 QFATQNNIHVTLVVHPRKEDGDTELDTQSFFGSAKATQEADNVLIIQDKRLDRDRGKKYLQILKNR----Y-YGDVGSDP 483 (514)
T ss_pred HHhhccceeEEEEecccccCCCceeeehhhccccccccccccEEEEeecccccccchhhhhhhhhc----c-cCcccccc
Confidence 99999999999999999998 89999999999999999999999999887777889999999999 5 688888 7
Q ss_pred eeeece
Q psy4520 238 ATYNGK 243 (291)
Q Consensus 238 l~f~g~ 243 (291)
|.|+..
T Consensus 484 LEf~kn 489 (514)
T KOG2373|consen 484 LEFVKN 489 (514)
T ss_pred eeeccC
Confidence 777654
No 16
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=100.00 E-value=1.1e-40 Score=324.97 Aligned_cols=194 Identities=14% Similarity=0.141 Sum_probs=166.8
Q ss_pred HHHHHHH-HcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHhh
Q psy4520 3 EYSLDLA-LQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVR 78 (291)
Q Consensus 3 q~al~la-~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (291)
+++.++| .+|++|++||+||+++++++|++++.++++..... ...++|
T Consensus 213 ~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~---------------------------- 264 (421)
T TIGR03600 213 NIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFNDSDF---------------------------- 264 (421)
T ss_pred HHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHH----------------------------
Confidence 5667777 68999999999999999999999999999887542 122334
Q ss_pred ccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeccccccCCCCCCccHHHHHHHHHH
Q psy4520 79 KPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVY-DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQ 157 (291)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~-gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r 157 (291)
+++..+.+++.+.|+||+|.++ .++++|++++|+++.++ ++++|||||||+|... .+.+++++++.|++
T Consensus 265 -------~~~~~~~~~l~~~~l~i~d~~~-~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~--~~~~~~~~~~~i~~ 334 (421)
T TIGR03600 265 -------NRLLNAVDRLSEKDLYIDDTGG-LTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPT--RGRDRNEELGGISR 334 (421)
T ss_pred -------HHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEecccccCCC--CCCCHHHHHHHHHH
Confidence 5677788999999999999877 69999999999999888 7999999999998753 23578899999999
Q ss_pred HHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCccc----cccceEEEEecccCCCC
Q psy4520 158 EFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQN----LELKKFLQALPIERCPQ 228 (291)
Q Consensus 158 ~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~----~~~~~~l~I~KnR~~~~ 228 (291)
.||.|||++||||++++| +|.++ ++|.++||||||+|||+||+|+||||+.+.+ ..+.++|+|+|||
T Consensus 335 ~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l~R~~~~~~~~~~~~~~el~v~K~R---- 410 (421)
T TIGR03600 335 GLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREPPAGVAELILAKNR---- 410 (421)
T ss_pred HHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccCcEEEEeccccccCCccCCCCceEEEEECCC----
Confidence 999999999999999999 88876 7899999999999999999999999998632 1256889999985
Q ss_pred ccCCCCCC-ceee
Q psy4520 229 FRDQPPGS-TATY 240 (291)
Q Consensus 229 ~R~g~~G~-~l~f 240 (291)
|||+|+ .+.|
T Consensus 411 --~G~~g~~~l~~ 421 (421)
T TIGR03600 411 --HGPTGTVELLF 421 (421)
T ss_pred --CCCCceEEecC
Confidence 899998 6544
No 17
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=100.00 E-value=4.1e-40 Score=321.51 Aligned_cols=207 Identities=16% Similarity=0.184 Sum_probs=177.3
Q ss_pred cHHHHHHHH-cCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHh
Q psy4520 2 SEYSLDLAL-QGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELV 77 (291)
Q Consensus 2 ~q~al~la~-qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 77 (291)
.+++.++|. +|++|++||+||++++++.|+++..++++..... ...++|
T Consensus 213 l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~--------------------------- 265 (434)
T TIGR00665 213 LNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDW--------------------------- 265 (434)
T ss_pred HHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHH---------------------------
Confidence 467888775 7999999999999999999999999999876542 122334
Q ss_pred hccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHH
Q psy4520 78 RKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQ 157 (291)
Q Consensus 78 ~~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r 157 (291)
+++..+.+++.+.|+||+|.++ .++++|+++++++++++|+++|||||||+|.... ...+++.+++.|++
T Consensus 266 --------~~~~~a~~~l~~~~l~i~d~~~-~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~-~~~~r~~~i~~i~~ 335 (434)
T TIGR00665 266 --------EKLTSAAGKLSEAPLYIDDTPG-LTITELRAKARRLKREHGLGLIVIDYLQLMSGSG-RSENRQQEVSEISR 335 (434)
T ss_pred --------HHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCC-CCCCHHHHHHHHHH
Confidence 5677788999999999999876 6899999999999999999999999999986433 23578889999999
Q ss_pred HHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCcc----ccccceEEEEecccCCCC
Q psy4520 158 EFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQ----NLELKKFLQALPIERCPQ 228 (291)
Q Consensus 158 ~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~----~~~~~~~l~I~KnR~~~~ 228 (291)
.||.||+++||||++++| ||+.+ ++|.++||||||+|||+||+|++|||+++. +..+.++|+|+|||
T Consensus 336 ~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l~r~~~~~~~~~~~~~~~l~v~KnR---- 411 (434)
T TIGR00665 336 SLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYYNPDSEDKGIAEIIIAKQR---- 411 (434)
T ss_pred HHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEeccccccCCCcCCCCceEEEEecCC----
Confidence 999999999999999999 99875 789999999999999999999999998742 22356889999986
Q ss_pred ccCCCCCC-ceeeeceEeEEeeCC
Q psy4520 229 FRDQPPGS-TATYNGKCYIFYNRR 251 (291)
Q Consensus 229 ~R~g~~G~-~l~f~g~~~~f~~~~ 251 (291)
||++|+ .+.|++.+.+|+|..
T Consensus 412 --~G~~g~~~l~~~~~~~~f~~~~ 433 (434)
T TIGR00665 412 --NGPTGTVKLAFQGEYTRFENLA 433 (434)
T ss_pred --CCCCCeEEEEEecCCCcccCCC
Confidence 899998 888888888887753
No 18
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=100.00 E-value=8.2e-40 Score=298.90 Aligned_cols=207 Identities=18% Similarity=0.240 Sum_probs=171.8
Q ss_pred cHHHHHHHHc-CCeEEEEeccCCHHHHHHHHHHHHhcCCCccccc---cccchhhhhccccccccccCCCCchhHHHHHh
Q psy4520 2 SEYSLDLALQ-GVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLD---KFDEYSDWFKTLPMYFLTFHGPQPLKLVMELV 77 (291)
Q Consensus 2 ~q~al~la~q-G~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 77 (291)
.|++++++.+ |.+|++||+||+.++++.|+++..++++...... ..++|
T Consensus 37 l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~--------------------------- 89 (259)
T PF03796_consen 37 LQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEF--------------------------- 89 (259)
T ss_dssp HHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHH---------------------------
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHH---------------------------
Confidence 5788898886 7999999999999999999999999998875432 12223
Q ss_pred hccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHh-CCCcEEEEeccccccCCCCCCccHHHHHHHHH
Q psy4520 78 RKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYV-YDTGHVIIDNVQFMLGLSDSALDRFYMQDTII 156 (291)
Q Consensus 78 ~~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~-~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~ 156 (291)
+++.++..++.+.|+||.+.++ .++++|.+.+++++.+ +++++|||||||+|.... ...+++++++.++
T Consensus 90 --------~~~~~~~~~l~~~~l~i~~~~~-~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~-~~~~~~~~~~~i~ 159 (259)
T PF03796_consen 90 --------ERLQAAAEKLSDLPLYIEDTPS-LTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSED-SSDNRRQEIGEIS 159 (259)
T ss_dssp --------HHHHHHHHHHHTSEEEEEESSS--BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSC-SSSCCHHHHHHHH
T ss_pred --------HHHHHHHHHHhhCcEEEECCCC-CCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCC-CCCCHHHHHHHHH
Confidence 5667788899999999999876 6999999999999999 899999999999987654 3467889999999
Q ss_pred HHHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCccc----cccceEEEEecccCCC
Q psy4520 157 QEFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQN----LELKKFLQALPIERCP 227 (291)
Q Consensus 157 r~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~----~~~~~~l~I~KnR~~~ 227 (291)
+.||.+|+++||||++++| +|..+ ++|+++||+|||.|||+||.|++|||++..+ ..+..+|+|+|||
T Consensus 160 ~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~~~~~~~~~~~l~v~KnR--- 236 (259)
T PF03796_consen 160 RELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLHRDEKYDEDRDDKGEAELIVAKNR--- 236 (259)
T ss_dssp HHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCHCCSSCTTEEEEEEEEES---
T ss_pred HHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhccchhhccccCCCCeEEEEEEecC---
Confidence 9999999999999999999 88775 6899999999999999999999999998532 2246789999986
Q ss_pred CccCCCCCC-ceeeeceEeEEeeCC
Q psy4520 228 QFRDQPPGS-TATYNGKCYIFYNRR 251 (291)
Q Consensus 228 ~~R~g~~G~-~l~f~g~~~~f~~~~ 251 (291)
+|++|+ .+.|++++.+|+|..
T Consensus 237 ---~G~~g~v~~~f~~~~~~f~~~~ 258 (259)
T PF03796_consen 237 ---NGPTGTVPLRFNPETSRFTDLE 258 (259)
T ss_dssp ---SS--EEEEEEEETTTTEEEE--
T ss_pred ---CCCCceEEEEEECCCCeEeecc
Confidence 899999 989999999998864
No 19
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=100.00 E-value=6.1e-33 Score=249.01 Aligned_cols=198 Identities=16% Similarity=0.191 Sum_probs=164.4
Q ss_pred cHHHHHHHHc-CCeEEEEeccCCHHHHHHHHHHHHhcCCCccccc---cccchhhhhccccccccccCCCCchhHHHHHh
Q psy4520 2 SEYSLDLALQ-GVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLD---KFDEYSDWFKTLPMYFLTFHGPQPLKLVMELV 77 (291)
Q Consensus 2 ~q~al~la~q-G~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 77 (291)
.|++++++.+ |.+|++||+||++++++.|++++.++++...... ..++|
T Consensus 31 ~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 83 (242)
T cd00984 31 LNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSDEDW--------------------------- 83 (242)
T ss_pred HHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHH---------------------------
Confidence 4788888887 9999999999999999999999999988765321 11112
Q ss_pred hccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHH
Q psy4520 78 RKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQ 157 (291)
Q Consensus 78 ~~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r 157 (291)
+.+.++...+...|+|+.+.+. .++++|.+.+++++.++++++||||||+.+.... ...+++.++..+++
T Consensus 84 --------~~~~~~~~~~~~~~~~i~~~~~-~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~-~~~~~~~~~~~~~~ 153 (242)
T cd00984 84 --------ERLAEAIGELKELPIYIDDSSS-LTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK-KKGNRQQEVAEISR 153 (242)
T ss_pred --------HHHHHHHHHHhcCCEEEeCCCC-CCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC-CCCCHHHHHHHHHH
Confidence 4455667778889999998755 6899999999999999999999999999876433 23578889999999
Q ss_pred HHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCcc----ccccceEEEEecccCCCC
Q psy4520 158 EFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQ----NLELKKFLQALPIERCPQ 228 (291)
Q Consensus 158 ~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~----~~~~~~~l~I~KnR~~~~ 228 (291)
.||.||+++||||++++| +|..+ ++|.++|++|||.|+|.||.|++|+|+... ...+..+|.|+|||
T Consensus 154 ~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~~~~~~~~~~~~~~~~l~v~KnR---- 229 (242)
T cd00984 154 SLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYNKESESKGIAEIIVAKNR---- 229 (242)
T ss_pred HHHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEecccccccccCCCCceEEEEECCC----
Confidence 999999999999999999 66543 689999999999999999999999999742 23456889999986
Q ss_pred ccCCCCCC-ceeeec
Q psy4520 229 FRDQPPGS-TATYNG 242 (291)
Q Consensus 229 ~R~g~~G~-~l~f~g 242 (291)
+|++|+ .+.|.|
T Consensus 230 --~G~~g~~~l~~~~ 242 (242)
T cd00984 230 --NGPTGTVELRFDG 242 (242)
T ss_pred --CCCCeeEEEEeeC
Confidence 799887 666654
No 20
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.97 E-value=1.1e-29 Score=232.18 Aligned_cols=210 Identities=28% Similarity=0.343 Sum_probs=162.1
Q ss_pred cHHHHHHHHc-CCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhcc
Q psy4520 2 SEYSLDLALQ-GVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKP 80 (291)
Q Consensus 2 ~q~al~la~q-G~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (291)
.|++.+++.+ |++|++||+||+.++++.|++++.+++++..... ...+ .
T Consensus 48 ~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~~~~-~~~~------------------~----------- 97 (271)
T cd01122 48 REYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHLPDT-VFIY------------------T----------- 97 (271)
T ss_pred HHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCcccCCc-cccc------------------c-----------
Confidence 5788888887 9999999999999999999999999987754211 0111 0
Q ss_pred chhhhhhHHHHHHhhcCC-CeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHH
Q psy4520 81 LLDNLDKFDEYSDWFKTL-PMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEF 159 (291)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~-pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~L 159 (291)
.+.+..+.+++.+. .++++|..+..+++++++.+++++..+++++|||||||.+........++...+..+++.|
T Consensus 98 ----~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L 173 (271)
T cd01122 98 ----LEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKL 173 (271)
T ss_pred ----HHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHH
Confidence 02333344555433 4788887776689999999999999999999999999988654322346667789999999
Q ss_pred HHHHHhcCceEEEEeccCCcC--------CCCccccccccccccccCccEEEEEccCcc--ccccceEEEEecccCCCCc
Q psy4520 160 RAFASRSHCHVTLVIHPRKEN--------EQLTVNSVFGSAKATQESDNVLIIQQKFNQ--NLELKKFLQALPIERCPQF 229 (291)
Q Consensus 160 K~~Ake~~VpVilvshpRk~e--------k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~--~~~~~~~l~I~KnR~~~~~ 229 (291)
|.||+++||+|++++|.++.. ++|.++|++||++|+|.||+||+|+|+.+. ......+|+|.|+| +
T Consensus 174 ~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~~e~~~~~~~~i~v~K~R----~ 249 (271)
T cd01122 174 RGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQAELDERNTTYLRILKNR----F 249 (271)
T ss_pred HHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCccccccCCcEEEEEEeec----c
Confidence 999999999999999955432 579999999999999999999999998763 23456779999997 2
Q ss_pred cCCCCCCceeeeceEeEEeeCCCCchh
Q psy4520 230 RDQPPGSTATYNGKCYIFYNRRPMNLR 256 (291)
Q Consensus 230 R~g~~G~~l~f~g~~~~f~~~~~~~~~ 256 (291)
.|++|. .+..+||+.|++|.
T Consensus 250 -~~~~g~------~~~~~~~~~t~~~~ 269 (271)
T cd01122 250 -TGGTGV------AGPLEYDKETGRLS 269 (271)
T ss_pred -CCCccc------eeeEEEECCCceec
Confidence 246653 35677777777764
No 21
>PRK07773 replicative DNA helicase; Validated
Probab=99.96 E-value=7.7e-29 Score=262.09 Aligned_cols=163 Identities=12% Similarity=0.122 Sum_probs=142.0
Q ss_pred HHHHHHHH-cCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHhh
Q psy4520 3 EYSLDLAL-QGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVR 78 (291)
Q Consensus 3 q~al~la~-qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (291)
++|.++|. +|.+|++||+||+.+|+++||++..++++..... ....+|
T Consensus 236 ~ia~~~a~~~~~~V~~fSlEms~~ql~~R~~s~~~~i~~~~i~~g~l~~~~~---------------------------- 287 (886)
T PRK07773 236 DFARNCAIRHRLAVAIFSLEMSKEQLVMRLLSAEAKIKLSDMRSGRMSDDDW---------------------------- 287 (886)
T ss_pred HHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHH----------------------------
Confidence 56777774 5899999999999999999999999999887542 223344
Q ss_pred ccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHH
Q psy4520 79 KPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQE 158 (291)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~ 158 (291)
+++..+.+++.+.|+||+|.++ .++++|++++|++++++|+++|||||||+|.... ...++.+++++|++.
T Consensus 288 -------~~~~~a~~~l~~~~i~i~d~~~-~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~-~~~~r~~ei~~isr~ 358 (886)
T PRK07773 288 -------TRLARAMGEISEAPIFIDDTPN-LTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGK-KYENRQQEVSEISRH 358 (886)
T ss_pred -------HHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCC-CCCCHHHHHHHHHHH
Confidence 5677788999999999999887 6999999999999999999999999999997543 346888999999999
Q ss_pred HHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEE
Q psy4520 159 FRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 159 LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi 202 (291)
||.||||+||||++++| ||.+| +||+||||||||.|+||+=++.
T Consensus 359 LK~lAkel~vpvi~lsQLnR~~e~r~~krP~lsDlres~~~~~d~~V~~ 407 (886)
T PRK07773 359 LKLLAKELEVPVVALSQLSRGVEQRTDKRPMLSDLRESGCLTGDTLILR 407 (886)
T ss_pred HHHHHHHHCCcEEEecccCcchhccCCCCCCHHHHhhcCcccCcceEEe
Confidence 99999999999999999 99987 8999999999999999875543
No 22
>PRK05973 replicative DNA helicase; Provisional
Probab=99.72 E-value=4.3e-17 Score=149.58 Aligned_cols=139 Identities=12% Similarity=0.112 Sum_probs=104.2
Q ss_pred HHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccch
Q psy4520 3 EYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLL 82 (291)
Q Consensus 3 q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 82 (291)
|++.++|.+|.+|.+||+||++.++.+||.+. |.+.. ++
T Consensus 83 qfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~--g~d~~-------~~-------------------------------- 121 (237)
T PRK05973 83 ELAVEAMKSGRTGVFFTLEYTEQDVRDRLRAL--GADRA-------QF-------------------------------- 121 (237)
T ss_pred HHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHc--CCChH-------Hh--------------------------------
Confidence 67888888999999999999999999998755 32211 11
Q ss_pred hhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHH
Q psy4520 83 DNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAF 162 (291)
Q Consensus 83 ~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~ 162 (291)
.+ +++.+.....+.++++ ++++.+++.++|||||||.+.... + ..+...+++.||.+
T Consensus 122 ---------~~------~~~~d~~d~~~~~~ii---~~l~~~~~~~lVVIDsLq~l~~~~----~-~~el~~~~~~Lk~~ 178 (237)
T PRK05973 122 ---------AD------LFEFDTSDAICADYII---ARLASAPRGTLVVIDYLQLLDQRR----E-KPDLSVQVRALKSF 178 (237)
T ss_pred ---------cc------ceEeecCCCCCHHHHH---HHHHHhhCCCEEEEEcHHHHhhcc----c-chhHHHHHHHHHHH
Confidence 00 2233332224555544 455557889999999999875321 1 12357789999999
Q ss_pred HHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCc
Q psy4520 163 ASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFN 209 (291)
Q Consensus 163 Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~ 209 (291)
||++||||++++| +|..| ++|+++|||- .|.+|..+|.+|=..
T Consensus 179 Ak~~gitvIl~sQl~r~~e~~~~~~P~laDlR~----~~~~d~~~f~~~~~~ 226 (237)
T PRK05973 179 ARERGLIIVFISQIDRSFDPSAKPLPDIRDVRL----PNPLDLSLFDKACFL 226 (237)
T ss_pred HHhCCCeEEEEecCccccccCCCCCCChhhcCC----CChhhHHHhhhhhee
Confidence 9999999999999 89987 6899999986 669999999988654
No 23
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.38 E-value=2.2e-11 Score=112.48 Aligned_cols=165 Identities=12% Similarity=0.212 Sum_probs=113.5
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccc
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPL 81 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (291)
.|++.+.|.+|.+|+++|+|++..++.+++..+.....+. |
T Consensus 54 ~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d--------~------------------------------- 94 (259)
T TIGR03878 54 EQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVD--------F------------------------------- 94 (259)
T ss_pred HHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCC--------H-------------------------------
Confidence 3678888889999999999999998888876654442221 1
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEcCCCC----CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHH
Q psy4520 82 LDNLDKFDEYSDWFKTLPMYFLTFHGP----QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQ 157 (291)
Q Consensus 82 ~~~~~~~~~a~~~~~~~pl~i~d~~g~----~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r 157 (291)
+. ..+ ++++.|.... .++++++..++++++++++++||||+++.+... .+ ....+++.
T Consensus 95 ----~~---~~~-----~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~----~~--~~~r~~~~ 156 (259)
T TIGR03878 95 ----DK---IEE-----NIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEA----KE--MMAREIVR 156 (259)
T ss_pred ----HH---HhC-----CEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhccc----ch--HHHHHHHH
Confidence 00 111 2555553321 257888999999999999999999999644221 11 33467899
Q ss_pred HHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCcc-----------ccccceEEEEeccc
Q psy4520 158 EFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQ-----------NLELKKFLQALPIE 224 (291)
Q Consensus 158 ~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~-----------~~~~~~~l~I~KnR 224 (291)
+|+.++++++|++++++|.++....... +..+.-.++-.||+||+|...... ..+....|.|.|.|
T Consensus 157 ~L~~~lk~~~~t~ll~~e~~~~~~~~~~-~~~~~~~~~~l~D~vI~L~~~~~~~~~~~~~~~~~~~~~~R~l~I~KmR 233 (259)
T TIGR03878 157 QLFNFMKKWYQTALFVSQKRSGHEELSA-EAAGGYAVSHIVDGTIVLAKQLIMSRFDASLYKKPIGEIVRLFRIDGCR 233 (259)
T ss_pred HHHHHHHHcCCeEEEEeccccCcccccc-cccCCcceeEeeccEEEEeeeeccchhhhhhccccccceEEEEEEEEcc
Confidence 9999999999999999997664211111 344443588999999999853211 12234569999988
No 24
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.33 E-value=6.4e-12 Score=108.75 Aligned_cols=131 Identities=24% Similarity=0.251 Sum_probs=72.0
Q ss_pred cHHHHHHHH----------cCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchh
Q psy4520 2 SEYSLDLAL----------QGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLK 71 (291)
Q Consensus 2 ~q~al~la~----------qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 71 (291)
.+++..++. ++.+|+++++|++..++..|+.......+....
T Consensus 50 ~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~---------------------------- 101 (193)
T PF13481_consen 50 LQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDAN---------------------------- 101 (193)
T ss_dssp HHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHH----------------------------
T ss_pred HHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccc----------------------------
Confidence 466666665 578999999999999999998877644311000
Q ss_pred HHHHHhhccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHh-CCCcEEEEeccccccCCCCCCccHHH
Q psy4520 72 LVMELVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYV-YDTGHVIIDNVQFMLGLSDSALDRFY 150 (291)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~-~gv~lviIDyLqlm~~~~~~~~~r~~ 150 (291)
..+....+. ...+++.++..+.. .+..++.+.+.+.. +++++||||+|+.+.... .+...
T Consensus 102 --------------~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~---~~~~~ 162 (193)
T PF13481_consen 102 --------------LFFVDLSNW-GCIRLFEPDSGGPL-LDEDLEELEAALKELYGPDLVVIDPLQSLHDGD---ENSNS 162 (193)
T ss_dssp --------------HHHHHH--E--EE---TTS---TT-SHHHHHHHHHHHTT----SEEEEE-GGGG--S----TT-HH
T ss_pred --------------eEEeecccc-ccceeeeccccccc-chHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCC---CCCHH
Confidence 111112222 33445544544433 45556666665666 899999999998877542 24434
Q ss_pred HHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 151 MQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 151 ~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
.+..+++.|++||+++||+|+++.|.+|.
T Consensus 163 ~~~~~~~~l~~la~~~~~~vi~v~H~~K~ 191 (193)
T PF13481_consen 163 AVAQLMQELKRLAKEYGVAVILVHHTNKS 191 (193)
T ss_dssp HHHHHHHHHHHHHHHH--EEEEEEEE---
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECCCCC
Confidence 45899999999999999999999998875
No 25
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.29 E-value=1.8e-10 Score=112.20 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=110.1
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccc
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPL 81 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (291)
.|++.+++.+|.+|+++|+|.+..|+..|+-+ .+.+. +
T Consensus 100 lq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~r--lg~~~-------~--------------------------------- 137 (372)
T cd01121 100 LQVAARLAKRGGKVLYVSGEESPEQIKLRADR--LGIST-------E--------------------------------- 137 (372)
T ss_pred HHHHHHHHhcCCeEEEEECCcCHHHHHHHHHH--cCCCc-------c---------------------------------
Confidence 46777778888999999999999988776421 11111 0
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCC-CCCccHHHHHHHHHHHHH
Q psy4520 82 LDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLS-DSALDRFYMQDTIIQEFR 160 (291)
Q Consensus 82 ~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~-~~~~~r~~~~~~i~r~LK 160 (291)
++++... .++++|.+.+ ..++.++||||++|.+.... +.......++.+++..|+
T Consensus 138 -----------------~l~l~~e---~~le~I~~~i----~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~ 193 (372)
T cd01121 138 -----------------NLYLLAE---TNLEDILASI----EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELM 193 (372)
T ss_pred -----------------cEEEEcc---CcHHHHHHHH----HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHH
Confidence 1344332 3567776655 45789999999999875322 111233456778899999
Q ss_pred HHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 161 AFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 161 ~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
++||++||+|+++.|.+|.. ++.|+..++..||.|+.+.++.. .....|.+.||| .|+++.
T Consensus 194 ~lak~~~itvilvghvtk~g------~~aG~~~leh~vD~Vi~le~~~~---~~~R~Lri~KnR------~g~~~e 254 (372)
T cd01121 194 RFAKERNIPIFIVGHVTKEG------SIAGPKVLEHMVDTVLYFEGDRH---SEYRILRSVKNR------FGSTNE 254 (372)
T ss_pred HHHHHcCCeEEEEeeccCCC------cccCcccchhhceEEEEEEcCCC---CcEEEEEEEeCC------CCCCCC
Confidence 99999999999999977642 36778899999999999987653 234568999997 366665
No 26
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.21 E-value=6.3e-10 Score=95.47 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=104.4
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccc
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPL 81 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (291)
.|++.+.+++|.+|+++|+|+++.++.+++.+. |.+...... +
T Consensus 17 ~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~--g~~~~~l~~----~------------------------------- 59 (187)
T cd01124 17 LQFLYAGLARGEPGLYVTLEESPEELIENAESL--GWDLERLED----E------------------------------- 59 (187)
T ss_pred HHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHc--CCChHHHHh----c-------------------------------
Confidence 367788889999999999999999999997544 544432110 0
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEcCC------CC-CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHH
Q psy4520 82 LDNLDKFDEYSDWFKTLPMYFLTFH------GP-QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDT 154 (291)
Q Consensus 82 ~~~~~~~~~a~~~~~~~pl~i~d~~------g~-~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~ 154 (291)
+ .+++.+.. +. ....+++..++.++..++.++||||+++.+... +.......
T Consensus 60 -----------g-----~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~-----~~~~~~~~ 118 (187)
T cd01124 60 -----------G-----LLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLM-----EQSTARLE 118 (187)
T ss_pred -----------C-----CeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhc-----ChHHHHHH
Confidence 0 01111110 00 011256777777778899999999999865532 22233344
Q ss_pred HHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 155 IIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 155 i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
+.+-++.+++ .|++|++++|...... ...+++.+++.||.|+.|++.... .....+|.|.|+|
T Consensus 119 i~~l~~~l~~-~g~tvi~v~~~~~~~~-----~~~~~~~~~~~aD~ii~l~~~~~~-~~~~r~l~i~K~R 181 (187)
T cd01124 119 IRRLLFALKR-FGVTTLLTSEQSGLEG-----TGFGGGDVEYLVDGVIRLRLDEEG-GRLRRSLSVVKMR 181 (187)
T ss_pred HHHHHHHHHH-CCCEEEEEeccccCCC-----cccCcCceeEeeeEEEEEEEEccC-CEEEEEEEEEEcc
Confidence 5555666554 4999999999554311 245778899999999999987542 2334579999987
No 27
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.20 E-value=8.6e-10 Score=109.61 Aligned_cols=154 Identities=20% Similarity=0.174 Sum_probs=107.9
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccc
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPL 81 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (291)
.|++.+++++|.+|+++|+|.+..|+..|+- ..+.+..
T Consensus 98 lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~--rlg~~~~---------------------------------------- 135 (446)
T PRK11823 98 LQVAARLAAAGGKVLYVSGEESASQIKLRAE--RLGLPSD---------------------------------------- 135 (446)
T ss_pred HHHHHHHHhcCCeEEEEEccccHHHHHHHHH--HcCCChh----------------------------------------
Confidence 4677778888999999999999999887742 1221110
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCC-CCCccHHHHHHHHHHHHH
Q psy4520 82 LDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLS-DSALDRFYMQDTIIQEFR 160 (291)
Q Consensus 82 ~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~-~~~~~r~~~~~~i~r~LK 160 (291)
++++... .+++++++.+ .+++.++||||++|.+.... +.......++.+++..|+
T Consensus 136 -----------------~l~~~~e---~~l~~i~~~i----~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~ 191 (446)
T PRK11823 136 -----------------NLYLLAE---TNLEAILATI----EEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELM 191 (446)
T ss_pred -----------------cEEEeCC---CCHHHHHHHH----HhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHH
Confidence 1334332 3466666544 45789999999999775422 111234456778899999
Q ss_pred HHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 161 AFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 161 ~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
.+||++||+|+++.|..|.. .+.|+..++..+|.|+.+.++.. .....|.|.|+| .|+++.
T Consensus 192 ~~ak~~~itvilv~hvtk~~------~~ag~~~lehlvD~Vi~le~~~~---~~~R~l~i~K~R------~g~~~e 252 (446)
T PRK11823 192 RLAKQRGIAVFLVGHVTKEG------AIAGPRVLEHMVDTVLYFEGDRH---SRYRILRAVKNR------FGATNE 252 (446)
T ss_pred HHHHHcCCEEEEEeeccCCC------CcCCcchhhhhCeEEEEEEcCCC---CceEEEEEccCC------CCCCCc
Confidence 99999999999999976642 25667779999999999875322 234568999997 366654
No 28
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.17 E-value=1.9e-09 Score=96.39 Aligned_cols=166 Identities=10% Similarity=0.102 Sum_probs=106.3
Q ss_pred HHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccch
Q psy4520 3 EYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLL 82 (291)
Q Consensus 3 q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 82 (291)
+++.+.+++|.+|+++|+|++..++.++ ++..|.++...... ..+ .+.
T Consensus 39 ~~~~~~~~~g~~~~~is~e~~~~~i~~~--~~~~g~~~~~~~~~-~~l---------~i~-------------------- 86 (229)
T TIGR03881 39 HFAYKGLRDGDPVIYVTTEESRESIIRQ--AAQFGMDFEKAIEE-GKL---------VII-------------------- 86 (229)
T ss_pred HHHHHHHhcCCeEEEEEccCCHHHHHHH--HHHhCCCHHHHhhc-CCE---------EEE--------------------
Confidence 4566677889999999999999999877 34445555432110 000 000
Q ss_pred hhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCC--CcEEEEeccccccCCCCCCccHHHHHHHHHHHHH
Q psy4520 83 DNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYD--TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFR 160 (291)
Q Consensus 83 ~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~g--v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK 160 (291)
+.+. ..+....++ . ..+++++..+++.++.++| .+.+|||+++.+.... . ....+++..|+
T Consensus 87 ---d~~~--~~~~~~~~~-----~-~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~----~--~~~r~~~~~l~ 149 (229)
T TIGR03881 87 ---DALM--KEKEDEWSL-----R-ELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDK----P--AMARKYSYYLK 149 (229)
T ss_pred ---Eccc--ccccccccc-----c-cCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccC----h--HHHHHHHHHHH
Confidence 0000 000001111 1 2579999999999888865 5689999998775321 1 12346788999
Q ss_pred HHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 161 AFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 161 ~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
++++++||+|++++|.-.....+.. -.++.-||.||.|+..... ......|.|.|.|
T Consensus 150 ~~l~~~~~tvil~~~~~~~~~~~~~------~~~~~l~D~vI~L~~~~~~-~~~~R~i~i~K~R 206 (229)
T TIGR03881 150 RVLNRWNFTILLTSQYAITTSQAFG------FGIEHVADGIIRFRKVVVD-GELRRYLIVEKMR 206 (229)
T ss_pred HHHHhCCCEEEEEecccccCCCCcc------cceEEEEeEEEEEEEeccC-CcEEEEEEEEecc
Confidence 9999999999999994332211111 2367899999999865542 2334569999987
No 29
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.15 E-value=1.4e-09 Score=98.50 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=102.2
Q ss_pred cCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccchhhhhhHHH
Q psy4520 11 QGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLLDNLDKFDE 90 (291)
Q Consensus 11 qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 90 (291)
.+.+|+++++|++..++.+|+.+......+...... . + + . .|
T Consensus 40 ~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~r---l-------~--~-~-~g------------------------ 81 (239)
T cd01125 40 EPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDR---L-------F--I-D-SG------------------------ 81 (239)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccc---e-------E--E-e-cc------------------------
Confidence 456899999999999999999887665433211100 0 0 0 0 00
Q ss_pred HHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceE
Q psy4520 91 YSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHV 170 (291)
Q Consensus 91 a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpV 170 (291)
...|+.+..........++...++.+ ..++.++||||++.-+.. . .++....+..++..|+++|+++||.|
T Consensus 82 -----~~~~l~~~~~~~~~~~~~~~~l~~~~-~~~~~~lvviDpl~~~~~-~--~~~d~~~~~~~~~~L~~~a~~~g~av 152 (239)
T cd01125 82 -----RIQPISIAREGRIIVVPEFERIIEQL-LIRRIDLVVIDPLVSFHG-V--SENDNGAMDAVIKALRRIAAQTGAAI 152 (239)
T ss_pred -----CCCceecccCCcccccHHHHHHHHHH-HhcCCCEEEECChHHhCC-C--CcCCHHHHHHHHHHHHHHHHHhCCEE
Confidence 01123332211011233333333333 367899999999965422 1 23445667889999999999999999
Q ss_pred EEEeccCCcC-CC-CccccccccccccccCccEEEEEccCc
Q psy4520 171 TLVIHPRKEN-EQ-LTVNSVFGSAKATQESDNVLIIQQKFN 209 (291)
Q Consensus 171 ilvshpRk~e-k~-p~lsDLrgSg~IeQdAD~Vi~L~R~~~ 209 (291)
+++.|.+|.. .. ...++.|||.++.+-+|.+++|.|...
T Consensus 153 l~v~H~~K~~~~~~~~~~~~rGssal~~~~r~~~~l~~~~~ 193 (239)
T cd01125 153 LLVHHVRKGSAKDGDTQEAARGASALVDGARWVRALTRMTS 193 (239)
T ss_pred EEEeccCcccccCcccccccCcHHHHhcccceEEEEeeCCH
Confidence 9999988776 22 488999999999999999999999865
No 30
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.14 E-value=1.7e-09 Score=96.72 Aligned_cols=159 Identities=13% Similarity=0.238 Sum_probs=100.3
Q ss_pred HHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccch
Q psy4520 3 EYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLL 82 (291)
Q Consensus 3 q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 82 (291)
|++.+.+.+|.+|+++|+|+++.++.+++.+. +.++ ++
T Consensus 35 ~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~--~~~~-------~~--------------------------------- 72 (224)
T TIGR03880 35 QFLYQGLKNGEKAMYISLEEREERILGYAKSK--GWDL-------ED--------------------------------- 72 (224)
T ss_pred HHHHHHHhCCCeEEEEECCCCHHHHHHHHHHc--CCCh-------HH---------------------------------
Confidence 56777778899999999999999999997432 1111 00
Q ss_pred hhhhhHHHHHHhhcCCCeEEEcCCC---CCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHH
Q psy4520 83 DNLDKFDEYSDWFKTLPMYFLTFHG---PQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEF 159 (291)
Q Consensus 83 ~~~~~~~~a~~~~~~~pl~i~d~~g---~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~L 159 (291)
. +.+ ++++.+.+. ...++.+...++.++.++++++||||+++.+..... +.......+.+-+
T Consensus 73 --------~---~~~-~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~~---~~~~~r~~l~~l~ 137 (224)
T TIGR03880 73 --------Y---IDK-SLYIVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLETLFD---DDAERRTELFRFY 137 (224)
T ss_pred --------H---HhC-CeEEEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhhhcC---CHHHHHHHHHHHH
Confidence 0 111 455555321 123677888888889999999999999987632111 1111122333333
Q ss_pred HHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccc-cccceEEEEeccc
Q psy4520 160 RAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQN-LELKKFLQALPIE 224 (291)
Q Consensus 160 K~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~-~~~~~~l~I~KnR 224 (291)
+.+ ++.|++|++++|..... |..++ .+.+++-||.|+.|.-..... ......|.|.|.|
T Consensus 138 ~~l-k~~~~tvll~s~~~~~~--~~~~~---~~~~~~l~D~vI~L~~~~~~~~~~~~r~l~v~K~R 197 (224)
T TIGR03880 138 SSL-RETGVTTILTSEADKTN--VFASK---YGLIEYLADGVIILKYVRNSDLRDVRLAVEVVKMR 197 (224)
T ss_pred HHH-HhCCCEEEEEEcccCCC--CCccC---CCceEEEEeEEEEEeeeecccCcceEEEEEEEEcc
Confidence 333 57899999999954421 22222 456899999999995332221 1223468999988
No 31
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.13 E-value=1.5e-09 Score=98.70 Aligned_cols=172 Identities=14% Similarity=0.156 Sum_probs=110.0
Q ss_pred HHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccch
Q psy4520 3 EYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLL 82 (291)
Q Consensus 3 q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 82 (291)
|++.+.+++|.+++++|+|+++.++.++|.+ .|.++....... .. ++.
T Consensus 40 ~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~--~g~~~~~~~~~g-~l---------~~~-------------------- 87 (237)
T TIGR03877 40 QFLWNGLQMGEPGIYVALEEHPVQVRRNMAQ--FGWDVRKYEEEG-KF---------AIV-------------------- 87 (237)
T ss_pred HHHHHHHHcCCcEEEEEeeCCHHHHHHHHHH--hCCCHHHHhhcC-CE---------EEE--------------------
Confidence 5677777889999999999999999999652 344432211000 00 000
Q ss_pred hhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHH
Q psy4520 83 DNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAF 162 (291)
Q Consensus 83 ~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~ 162 (291)
+.+..........+.|+.+.+. ++++++.+++.++..++.++||||+|+.+.... . ...-+++..|+.+
T Consensus 88 ---d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~----~--~~~r~~l~~l~~~ 156 (237)
T TIGR03877 88 ---DAFTGGIGEAAEREKYVVKDPT--DVRELIDVLRQAIRDINAKRVVIDSVTTLYITK----P--AMARSIVMQLKRV 156 (237)
T ss_pred ---eccccccccccccccccccCcc--cHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCC----h--HHHHHHHHHHHHH
Confidence 0000001111223455554443 688999999999999999999999998654211 1 1123678999999
Q ss_pred HHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 163 ASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 163 Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
+|++||+|++++|-...++ + .. + -.++.-||.||.|...... ......|.|.|.|
T Consensus 157 lk~~~~t~llt~~~~~~~~-~-~~---~-~~~~~~~D~vI~L~~~~~~-~~~~R~l~i~K~R 211 (237)
T TIGR03877 157 LSGLGCTSIFVSQVSVGER-G-FG---G-PGVEHAVDGIIRLDLDEID-GELKRSLIVWKMR 211 (237)
T ss_pred HHhCCCEEEEEECcccccc-c-cc---c-cceEEEEeEEEEEEEEeeC-CceEEEEEEEECC
Confidence 9999999999998332211 1 01 1 2367789999999865432 2234669999987
No 32
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.13 E-value=2.3e-09 Score=106.88 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=108.9
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccc
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPL 81 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (291)
.|++.+++.+|.+|+++|+|.+..|+..|+.+ .+.+.
T Consensus 112 lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~r--lg~~~----------------------------------------- 148 (454)
T TIGR00416 112 LQVACQLAKNQMKVLYVSGEESLQQIKMRAIR--LGLPE----------------------------------------- 148 (454)
T ss_pred HHHHHHHHhcCCcEEEEECcCCHHHHHHHHHH--cCCCh-----------------------------------------
Confidence 46778888888999999999999998877532 11110
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCC-CCccHHHHHHHHHHHHH
Q psy4520 82 LDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSD-SALDRFYMQDTIIQEFR 160 (291)
Q Consensus 82 ~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~-~~~~r~~~~~~i~r~LK 160 (291)
+ .+++.+. .++++|.+.+ .+++.++||||++|.+..... .......++.+++..|+
T Consensus 149 -----------~-----~l~~~~e---~~~~~I~~~i----~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~ 205 (454)
T TIGR00416 149 -----------P-----NLYVLSE---TNWEQICANI----EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELM 205 (454)
T ss_pred -----------H-----HeEEcCC---CCHHHHHHHH----HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHH
Confidence 1 1444432 3567776554 457899999999998753221 11122345678899999
Q ss_pred HHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 161 AFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 161 ~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
++||++|++|+++.|..+. ..+.|+..++.-+|.|+.+..+.. .....+.+.|+| .|++++
T Consensus 206 ~~ak~~giTvllt~hvtke------g~~aG~~~le~lvD~VI~Le~~~~---~~~R~L~v~K~R------~g~~~e 266 (454)
T TIGR00416 206 RLAKTRGIAIFIVGHVTKE------GSIAGPKVLEHMVDTVLYFEGDRD---SRFRILRSVKNR------FGATNE 266 (454)
T ss_pred HHHHHhCCEEEEEeccccC------CccCCcccEeeeceEEEEEeccCC---CcEEEEEEecCC------CCCCCc
Confidence 9999999999999997663 246778889999999999987442 223468999987 367655
No 33
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.06 E-value=7.1e-09 Score=92.66 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=64.4
Q ss_pred CCCcEEEEeccccccCC---C-CCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC-cCCCCccccccccccccccCc
Q psy4520 125 YDTGHVIIDNVQFMLGL---S-DSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK-ENEQLTVNSVFGSAKATQESD 199 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~---~-~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk-~ek~p~lsDLrgSg~IeQdAD 199 (291)
+++++||||++..+... . .....+...+.++++.|+++|+++||+|+++.|.+. .+.. ... -.|+..++..+|
T Consensus 106 ~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~-~~~-~~gg~~~~~~~d 183 (225)
T PRK09361 106 ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSD-GLR-PLGGHTLEHWSK 183 (225)
T ss_pred hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCC-ccc-CCCcchhhhhcc
Confidence 78999999999754321 1 112233566777888999999999999999999443 2211 111 234557899999
Q ss_pred cEEEEEccCccccccceEEEEeccc
Q psy4520 200 NVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 200 ~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
.|+.|.+... ....+.|.|+|
T Consensus 184 ~ii~l~~~~~----~~r~~~i~k~~ 204 (225)
T PRK09361 184 TILRLEKFRN----GKRRATLEKHR 204 (225)
T ss_pred EEEEEEEccC----CeEEEEEEECC
Confidence 9999988322 23456788875
No 34
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.02 E-value=5.5e-09 Score=85.87 Aligned_cols=96 Identities=10% Similarity=0.102 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCC-CccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC-CCCccc
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDS-ALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN-EQLTVN 186 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~-~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e-k~p~ls 186 (291)
.........+.+....++.+++|||+++.+...... .........++++.|..++++.+++|+++.|.++.+ ..+.-
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~- 146 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGDPRL- 146 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccccCccc-
Confidence 345556667778888899999999999865432110 012234567889999999999999999999955544 43333
Q ss_pred cccccccccccCccEEEEEc
Q psy4520 187 SVFGSAKATQESDNVLIIQQ 206 (291)
Q Consensus 187 DLrgSg~IeQdAD~Vi~L~R 206 (291)
.+|+.++++.||.++.|.|
T Consensus 147 -~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 147 -TRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred -ccCccceeeecceEEEEeC
Confidence 8999999999999999976
No 35
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.00 E-value=2.5e-08 Score=88.67 Aligned_cols=125 Identities=12% Similarity=0.115 Sum_probs=88.3
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHH---hCCCcEEEEeccccccCCC--CC--CccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMY---VYDTGHVIIDNVQFMLGLS--DS--ALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~---~~gv~lviIDyLqlm~~~~--~~--~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+++.+.. +.+++...++.+.. .+++++||||+++.+.... .. ..++...+.++++.|+.+|++++|+|++
T Consensus 88 i~~~~~~---~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~ 164 (226)
T cd01393 88 IYVARPY---NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVF 164 (226)
T ss_pred EEEEeCC---CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEE
Confidence 6665542 46777777776654 6789999999997654321 11 1245567788999999999999999999
Q ss_pred Eecc-CCcCC---CCccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 173 VIHP-RKENE---QLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 173 vshp-Rk~ek---~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
+.|. ++.+. .+.. -.+...|...+|++++|.+.... ......+.|.|++ ..|.|+
T Consensus 165 tnq~~~~~~~~~~~~~~--p~~G~~~~~~~~~ri~l~~~~~~-~~~~r~~~~~k~~------~~~~~~ 223 (226)
T cd01393 165 TNQVRAKVDVMFGDPET--PAGGNALAHASTTRLDLRKGRGI-IGERRIAKVVKSP------ALPEAE 223 (226)
T ss_pred EEEEeeecccccCCCcc--ccCchhhhCcccEEEEEEecCCc-cCcEEEEEEEeCC------CCCCcc
Confidence 9994 44431 2222 24567999999999999987643 2244569999986 466664
No 36
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.86 E-value=1.5e-07 Score=83.55 Aligned_cols=94 Identities=10% Similarity=0.056 Sum_probs=62.2
Q ss_pred CCCcEEEEeccccccCCC-C---CCccHHHHHHHHHHHHHHHHHhcCceEEEEec-cCCcCCCCccccccccccccccCc
Q psy4520 125 YDTGHVIIDNVQFMLGLS-D---SALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRKENEQLTVNSVFGSAKATQESD 199 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~-~---~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk~ek~p~lsDLrgSg~IeQdAD 199 (291)
.+.++||||+++.+.... + ...++..++.++++.|+.+|+++||+|+++.| ++..+. ...... |+-.++--||
T Consensus 102 ~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~-~~~~p~-~g~~~~~~~d 179 (218)
T cd01394 102 EKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGS-GSVRPL-GGHTLEHWSK 179 (218)
T ss_pred cCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCC-Cccccc-CCcchhccee
Confidence 458999999998763211 1 11234456777889999999999999999999 444431 111112 3345899999
Q ss_pred cEEEEEccCccccccceEEEEeccc
Q psy4520 200 NVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 200 ~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
.||.|.+.+. ......+.|+|
T Consensus 180 ~~i~l~~~~~----~~r~~~~~~~~ 200 (218)
T cd01394 180 VILRLEKLRV----GTRRAVLEKHR 200 (218)
T ss_pred EEEEEEEcCC----CeEEEEEeeCC
Confidence 9999998652 12233466754
No 37
>PRK04328 hypothetical protein; Provisional
Probab=98.84 E-value=2.3e-07 Score=85.26 Aligned_cols=172 Identities=13% Similarity=0.111 Sum_probs=105.7
Q ss_pred HHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccch
Q psy4520 3 EYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLL 82 (291)
Q Consensus 3 q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 82 (291)
|++.+.+.+|.+++++|+|.++.++.++|-+ .|.++.....+.. +++.+..
T Consensus 42 ~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~--~g~d~~~~~~~~~----------l~iid~~----------------- 92 (249)
T PRK04328 42 QFLWNGLQMGEPGVYVALEEHPVQVRRNMRQ--FGWDVRKYEEEGK----------FAIVDAF----------------- 92 (249)
T ss_pred HHHHHHHhcCCcEEEEEeeCCHHHHHHHHHH--cCCCHHHHhhcCC----------EEEEecc-----------------
Confidence 5677777899999999999999998776532 3444332211000 0000000
Q ss_pred hhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHH
Q psy4520 83 DNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAF 162 (291)
Q Consensus 83 ~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~ 162 (291)
....+......-|+...+ .++++++..++.+..+++.+.||||+++-+.... . ...-+++..|+.+
T Consensus 93 ------~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~----~--~~~r~~~~~l~~~ 158 (249)
T PRK04328 93 ------TGGIGSAAKREKYVVKDP--DDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTK----P--AMARSIVMQLKRV 158 (249)
T ss_pred ------ccccccccccccccccCc--ccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCC----h--HHHHHHHHHHHHH
Confidence 000000011112333222 3578889999999999999999999997553211 1 1123578899999
Q ss_pred HHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 163 ASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 163 Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
+|++||++++++|....+. + +.|. .++.-||.||.|...... ......+.|.|.|
T Consensus 159 lk~~g~t~llt~e~~~~~~-~----~~~~-~~~~~~D~vI~L~~~~~~-~~~~R~l~I~K~R 213 (249)
T PRK04328 159 LSGLGCTAIFVSQVSVGER-G----FGGP-GVEHAVDGIIRLDLDEID-GELKRSLIVWKMR 213 (249)
T ss_pred HHhCCCEEEEEECcccccc-c----cCCC-CcEEEEEEEEEEEEEecC-CcEEEEEEEEEcc
Confidence 9999999999998443211 1 1122 356779999999876532 2234569999987
No 38
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.77 E-value=2.5e-07 Score=92.99 Aligned_cols=169 Identities=12% Similarity=0.139 Sum_probs=109.6
Q ss_pred cHHHHHHHHc-CCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhcc
Q psy4520 2 SEYSLDLALQ-GVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKP 80 (291)
Q Consensus 2 ~q~al~la~q-G~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (291)
.|++.+.+++ |.+|+++|+|++++++.++|.+. |.++.....+ .. +++....
T Consensus 49 ~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~--g~d~~~~~~~-g~---------l~~~~~~--------------- 101 (509)
T PRK09302 49 LQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASF--GWDLQKLIDE-GK---------LFILDAS--------------- 101 (509)
T ss_pred HHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHc--CCCHHHHhhC-Ce---------EEEEecC---------------
Confidence 3678888877 99999999999999999998753 5554332110 00 1111100
Q ss_pred chhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHH
Q psy4520 81 LLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFR 160 (291)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK 160 (291)
..+...++ .+..+++.+..++..++.+++.+.||||.++-+.... +.....-..+..|.
T Consensus 102 ----------------~~~~~~~~-~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~----d~~~~~r~~l~~L~ 160 (509)
T PRK09302 102 ----------------PDPSEQEE-AGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGF----SNEAVVRRELRRLF 160 (509)
T ss_pred ----------------cccccccc-cccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhc----cCHHHHHHHHHHHH
Confidence 00000011 2334678889999999999999999999997543221 11222344567777
Q ss_pred HHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 161 AFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 161 ~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
..+++.+|.++++.|.-.. ..++...+-.+.-||.|+.|...... ......|.|.|.|
T Consensus 161 ~~Lk~~g~TvLlt~~~~~~-----~~~~~~~~~~~~laDgVI~L~~~~~~-~~~~R~l~I~K~R 218 (509)
T PRK09302 161 AWLKQKGVTAVITGERGDE-----YGPLTRYGVEEFVSDCVIILRNRLEG-EKRTRTLRILKYR 218 (509)
T ss_pred HHHHhCCCEEEEEECCccC-----cCCccccCceEEEeeEEEEEeEEccC-CeEEEEEEEEECC
Confidence 8889999999999985331 12334445567899999999865432 2234679999987
No 39
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.76 E-value=4.8e-07 Score=79.74 Aligned_cols=104 Identities=11% Similarity=0.081 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCC--CCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccC-CcCCCCccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLS--DSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR-KENEQLTVNSVFG 190 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~--~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR-k~ek~p~lsDLrg 190 (291)
.+.........+++++||||.++.+.... .....+.....+.+..|+++|+++||.|+++.|-+ ..+.. ...-.|
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~~~~--~~~~~g 162 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVYTDVNNG--TLRPLG 162 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEecCCC--CCcCCC
Confidence 35555555566789999999997553211 11112344556678889999999999999999943 32210 011124
Q ss_pred cccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 191 SAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 191 Sg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
+..++.-||.|+.|.+.. +...++|.|.|
T Consensus 163 g~~~~~~~d~vi~l~~~~-----~~r~~~i~k~~ 191 (209)
T TIGR02237 163 GHLLEHWSKVILRLEKFR-----GRRLATLEKHR 191 (209)
T ss_pred cchhheeeeEEEEEEecC-----CEEEEEEEECC
Confidence 446789999999998752 23456677754
No 40
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.75 E-value=1.2e-07 Score=84.85 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=105.8
Q ss_pred cHHHHHHHHc-CCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhcc
Q psy4520 2 SEYSLDLALQ-GVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKP 80 (291)
Q Consensus 2 ~q~al~la~q-G~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (291)
.|++.+.+++ |.+|+++|+|.+++++.++|- ..|.++....
T Consensus 37 ~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~--s~g~d~~~~~------------------------------------ 78 (226)
T PF06745_consen 37 LQFLYNGLKNFGEKVLYVSFEEPPEELIENMK--SFGWDLEEYE------------------------------------ 78 (226)
T ss_dssp HHHHHHHHHHHT--EEEEESSS-HHHHHHHHH--TTTS-HHHHH------------------------------------
T ss_pred HHHHHHhhhhcCCcEEEEEecCCHHHHHHHHH--HcCCcHHHHh------------------------------------
Confidence 4788888889 999999999999999888865 2233322110
Q ss_pred chhhhhhHHHHHHhhcCCCeEEEcCCC------CCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHH
Q psy4520 81 LLDNLDKFDEYSDWFKTLPMYFLTFHG------PQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDT 154 (291)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~pl~i~d~~g------~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~ 154 (291)
+ +-.+.+.|... ..+++.+...+.....+.+.+.||||.|+.+ .... +. ...-.
T Consensus 79 ------------~---~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l-~~~~---~~-~~~r~ 138 (226)
T PF06745_consen 79 ------------D---SGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL-LLYD---DP-EELRR 138 (226)
T ss_dssp ------------H---TTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH-TTSS---SG-GGHHH
T ss_pred ------------h---cCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH-hhcC---CH-HHHHH
Confidence 0 00133333221 2478999999999889999999999999876 2221 11 22345
Q ss_pred HHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccc-cCccEEEEEccCccccccceEEEEeccc
Q psy4520 155 IIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQ-ESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 155 i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQ-dAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
+++.|..++++.+|.++++++.... .+-.+...++. -||.||.|...... ..-...|.|.|.|
T Consensus 139 ~l~~l~~~l~~~~~t~llt~~~~~~------~~~~~~~~i~~~l~D~vI~L~~~~~~-~~~~R~l~I~K~R 202 (226)
T PF06745_consen 139 FLRALIKFLKSRGVTTLLTSEMPSG------SEDDGTFGIEHYLADGVIELRYEEEG-GRIRRRLRIVKMR 202 (226)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEESSS------SSSSSSTSHHHHHSSEEEEEEEEEET-TEEEEEEEEEEET
T ss_pred HHHHHHHHHHHCCCEEEEEEccccC------cccccccchhhhcccEEEEEEEEeeC-CEEEEEEEEEEcC
Confidence 7899999999999999999984332 12233445666 89999999976542 2334569999987
No 41
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.68 E-value=5.3e-07 Score=90.44 Aligned_cols=160 Identities=8% Similarity=0.091 Sum_probs=108.3
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccc
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPL 81 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (291)
.|++.++|++|.+++++|+|-++.|+..|+- ..|.++.....
T Consensus 281 ~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~--~lg~~~~~~~~------------------------------------ 322 (484)
T TIGR02655 281 SKFLENACANKERAILFAYEESRAQLLRNAY--SWGIDFEEMEQ------------------------------------ 322 (484)
T ss_pred HHHHHHHHHCCCeEEEEEeeCCHHHHHHHHH--HcCCChHHHhh------------------------------------
Confidence 4788999999999999999999999999972 23433321100
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEc-CCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHH
Q psy4520 82 LDNLDKFDEYSDWFKTLPMYFLT-FHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFR 160 (291)
Q Consensus 82 ~~~~~~~~~a~~~~~~~pl~i~d-~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK 160 (291)
.+. |++.+ .+...++++.+..++..+..++.+.||||.+|.+.... +. .+.-+.+..|-
T Consensus 323 ----------~g~-----l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~~----~~-~~~r~~~~~l~ 382 (484)
T TIGR02655 323 ----------QGL-----LKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALARGV----SN-NAFRQFVIGVT 382 (484)
T ss_pred ----------CCc-----EEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhc----CH-HHHHHHHHHHH
Confidence 011 33333 23345778899999999999999999999998764321 11 22234677788
Q ss_pred HHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 161 AFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 161 ~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
.++|+.||++++.......-. +.-.....+.-.||+||+|...+.. .+-+..|.|.|-|
T Consensus 383 ~~lk~~~it~~~t~~~~~~~~----~~~~~~~~~s~l~D~ii~l~~~e~~-g~~~r~i~V~K~R 441 (484)
T TIGR02655 383 GYAKQEEITGFFTNTSDQFMG----SHSITDSHISTITDTILMLQYVEIR-GEMSRAINVFKMR 441 (484)
T ss_pred HHHhhCCCeEEEeeccccccc----CCccCCCCeeEeeeEEEEEEEEecC-CEEEEEEEEEEcc
Confidence 999999999999965333210 0001113467789999999755432 2334568999987
No 42
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.2e-06 Score=84.47 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=110.5
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccc
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPL 81 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (291)
-|++-++|.++ +|++.|.|-|..|+..| ++..+++.
T Consensus 111 LQva~~lA~~~-~vLYVsGEES~~QiklR--A~RL~~~~----------------------------------------- 146 (456)
T COG1066 111 LQVAARLAKRG-KVLYVSGEESLQQIKLR--ADRLGLPT----------------------------------------- 146 (456)
T ss_pred HHHHHHHHhcC-cEEEEeCCcCHHHHHHH--HHHhCCCc-----------------------------------------
Confidence 46777777788 99999999999999776 23333322
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCC-CCCccHHHHHHHHHHHHH
Q psy4520 82 LDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLS-DSALDRFYMQDTIIQEFR 160 (291)
Q Consensus 82 ~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~-~~~~~r~~~~~~i~r~LK 160 (291)
-.+|+... +++++|++.+.. ..-+++|||.+|-|.... .+.--.-.++-+...+|-
T Consensus 147 ----------------~~l~l~aE---t~~e~I~~~l~~----~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~ 203 (456)
T COG1066 147 ----------------NNLYLLAE---TNLEDIIAELEQ----EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELM 203 (456)
T ss_pred ----------------cceEEehh---cCHHHHHHHHHh----cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHH
Confidence 11555443 568888876654 668999999999876533 122223455777899999
Q ss_pred HHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCCceee
Q psy4520 161 AFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGSTATY 240 (291)
Q Consensus 161 ~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~~l~f 240 (291)
++||+.||++++|-|-+|... |.|---.|--.|.|+.+.-|... .-..|+..||| | |++++-.-|
T Consensus 204 ~~AK~~~i~~fiVGHVTKeG~------IAGPrvLEHmVDtVlyFEGd~~~---~~RiLR~vKNR----F--G~t~EiGvF 268 (456)
T COG1066 204 RLAKTKNIAIFIVGHVTKEGA------IAGPRVLEHMVDTVLYFEGDRHS---RYRILRSVKNR----F--GATNELGVF 268 (456)
T ss_pred HHHHHcCCeEEEEEEEccccc------ccCchheeeeeeEEEEEeccCCC---ceeeeehhccc----C--CcccceeEE
Confidence 999999999999999888741 33333456678999999876532 22347788998 6 888764344
Q ss_pred e
Q psy4520 241 N 241 (291)
Q Consensus 241 ~ 241 (291)
+
T Consensus 269 e 269 (456)
T COG1066 269 E 269 (456)
T ss_pred E
Confidence 4
No 43
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.56 E-value=2.1e-06 Score=86.34 Aligned_cols=158 Identities=11% Similarity=0.076 Sum_probs=105.6
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccc
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPL 81 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (291)
.|++.+++.+|.+|+++|+|+++.++.+++- ..|.++.....
T Consensus 291 ~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~--~~g~~~~~~~~------------------------------------ 332 (509)
T PRK09302 291 SKFAEAACRRGERCLLFAFEESRAQLIRNAR--SWGIDLEKMEE------------------------------------ 332 (509)
T ss_pred HHHHHHHHhCCCcEEEEEecCCHHHHHHHHH--HcCCChHHHhh------------------------------------
Confidence 3677788889999999999999999988762 22333321100
Q ss_pred hhhhhhHHHHHHhhcCCCeEE-EcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHH
Q psy4520 82 LDNLDKFDEYSDWFKTLPMYF-LTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFR 160 (291)
Q Consensus 82 ~~~~~~~~~a~~~~~~~pl~i-~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK 160 (291)
.+. +.+ +..+...++++.+..+......++.++||||.|+.+.... + .....+.+..|.
T Consensus 333 ----------~g~-----l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~----~-~~~~~~~l~~l~ 392 (509)
T PRK09302 333 ----------KGL-----LKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGG----S-LNEFRQFVIRLT 392 (509)
T ss_pred ----------cCC-----ceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC----C-HHHHHHHHHHHH
Confidence 000 111 1222334677888888888888999999999997654322 1 133456788899
Q ss_pred HHHHhcCceEEEEeccCCc--CCCCccccccccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 161 AFASRSHCHVTLVIHPRKE--NEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 161 ~~Ake~~VpVilvshpRk~--ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
.++|++||.|+++.+.... ..... ...++--||+||.|...... ..-...|.|.|.|
T Consensus 393 ~~~k~~~~t~l~t~~~~~~~g~~~~~------~~~~~~l~D~vI~L~~~~~~-~~~~R~l~I~K~R 451 (509)
T PRK09302 393 DYLKSEEITGLFTNLTPDFMGSHSIT------ESHISSLTDTWILLQYVEIN-GEMNRALYVLKMR 451 (509)
T ss_pred HHHHhCCCeEEEEeccccccCCCCCC------cCceEEeeeEEEEEEEeecC-CeeEEEEEEEEcC
Confidence 9999999999999874331 11111 12367789999999876542 2223569999987
No 44
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.40 E-value=9.9e-06 Score=72.39 Aligned_cols=120 Identities=11% Similarity=0.135 Sum_probs=78.1
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeccccccCC--CCC--CccHHHHHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMYVY-DTGHVIIDNVQFMLGL--SDS--ALDRFYMQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~~~-gv~lviIDyLqlm~~~--~~~--~~~r~~~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
+++....+......++...+....++ ++++||||.++.+... ... ...+...+.++++.||++|++++|+|+++.
T Consensus 88 i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 88 IYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 55554333223344555566666677 8999999999755321 111 135667788999999999999999999999
Q ss_pred c-cCCcCCC-----CccccccccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 175 H-PRKENEQ-----LTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 175 h-pRk~ek~-----p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
| ..+.+.. ..... .+--.|..-++..+++.|... ....+.|.|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~p-~lG~~w~~~v~~Rl~l~~~~~----~~r~~~i~k~~ 218 (235)
T cd01123 168 QVTARPDGAAMFGGDPKKP-AGGNIWAHASTTRLYLRKGRG----EERIAKIVDSP 218 (235)
T ss_pred cEeecCCcccccCCCCeec-cCccHhhCCceEEEEEEECCC----CceEEEEeeCC
Confidence 8 3333211 11111 122467888888899988742 33579999975
No 45
>PRK07773 replicative DNA helicase; Validated
Probab=98.35 E-value=3.7e-07 Score=97.76 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=49.2
Q ss_pred ccccccccccccCccEEEEEccCccc----cccceEEEEecccCCCCccCCCCCC-ceeeeceEeEEeeCC
Q psy4520 186 NSVFGSAKATQESDNVLIIQQKFNQN----LELKKFLQALPIERCPQFRDQPPGS-TATYNGKCYIFYNRR 251 (291)
Q Consensus 186 sDLrgSg~IeQdAD~Vi~L~R~~~~~----~~~~~~l~I~KnR~~~~~R~g~~G~-~l~f~g~~~~f~~~~ 251 (291)
.++--..+||||||+|+||||+++.+ ..+.++|+|+||| |||+|+ .+.|++++++|.|..
T Consensus 820 ng~~~hn~i~~dAD~v~~l~r~~~y~~~~~~~g~~e~ii~K~R------~g~~g~~~~~~~~~~~~f~~~~ 884 (886)
T PRK07773 820 NGIIVHNSIEQDADVVILLYRPDYYDRDDPRGGEAEFIVAKHR------NGPTGTVTLAFQLHLSRFANLA 884 (886)
T ss_pred cceEecCceeccCCEEEEEechhhcCCCCCCCCceEEEEeccC------CCCCceEEEEEecCcceeeccC
Confidence 44445578999999999999988532 2367899999985 999999 999999999998753
No 46
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=98.24 E-value=4.7e-05 Score=72.25 Aligned_cols=112 Identities=12% Similarity=0.140 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHh-CCCcEEEEeccccccCC--CCCC--ccHHHHHHHHHHHHHHHHHhcCceEEEEec-cCCcC---CCC
Q psy4520 113 LVMEAVEHAMYV-YDTGHVIIDNVQFMLGL--SDSA--LDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRKEN---EQL 183 (291)
Q Consensus 113 ~i~~~~r~~~~~-~gv~lviIDyLqlm~~~--~~~~--~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk~e---k~p 183 (291)
.++..+..+... +++++||||.++.+... ...+ ..+.....+++..|+++|+++||+|+++.| ..+.+ ..|
T Consensus 184 ~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnqv~~~~~~~~~~~ 263 (317)
T PRK04301 184 LLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDP 263 (317)
T ss_pred HHHHHHHHHHhccCceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeceEEeccccccCcc
Confidence 344555555555 78999999999765321 1110 123444667889999999999999999998 33322 111
Q ss_pred ccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 184 TVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 184 ~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
. -..|--.+..-++..+.|.+... ....+.|.|++ .+|.|.
T Consensus 264 -~-~~~~G~~~~~~~~~rl~l~k~~~----~~R~~~v~k~~------~~~~~~ 304 (317)
T PRK04301 264 -T-QPIGGHILGHTATFRIYLRKSKG----NKRIARLVDSP------HLPEGE 304 (317)
T ss_pred -c-cCCcchHhHhheeEEEEEEecCC----CceEEEEEeCC------CCCCce
Confidence 1 11122347888888999987432 23478999986 467664
No 47
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.08 E-value=9.9e-05 Score=66.50 Aligned_cols=161 Identities=13% Similarity=0.126 Sum_probs=98.1
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccc
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPL 81 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (291)
.|++.+.+.+|.+|+++|+|.++.+++++|-+ .|.+...... + ..++++
T Consensus 43 ~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~--~g~~~~~~~~----~----g~l~i~--------------------- 91 (234)
T PRK06067 43 QQFVYGALKQGKKVYVITTENTSKSYLKQMES--VKIDISDFFL----W----GYLRIF--------------------- 91 (234)
T ss_pred HHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHH--CCCChhHHHh----C----CCceEE---------------------
Confidence 46777888899999999999999999888733 3433322100 0 000000
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEc-CCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHH
Q psy4520 82 LDNLDKFDEYSDWFKTLPMYFLT-FHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFR 160 (291)
Q Consensus 82 ~~~~~~~~~a~~~~~~~pl~i~d-~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK 160 (291)
+++..+ .......+.++..+..+...++.++||||.+....... +. ..+..+++.|+
T Consensus 92 -----------------~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~----~~-~~~~~~l~~l~ 149 (234)
T PRK06067 92 -----------------PLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYA----EE-DDILNFLTEAK 149 (234)
T ss_pred -----------------eccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcC----CH-HHHHHHHHHHH
Confidence 000000 00112457788888888888899999999997543211 21 33556777787
Q ss_pred HHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 161 AFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 161 ~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
.+++ .++.+++++|......+ ....++.-||.|+.|..... .......|.|.|-|
T Consensus 150 ~l~~-~g~tvllt~~~~~~~~~-------~~~~~~~l~DgvI~L~~~~~-~~~~~r~l~i~K~R 204 (234)
T PRK06067 150 NLVD-LGKTILITLHPYAFSEE-------LLSRIRSICDVYLKLRAEQI-GGRYVKVLEVVKLR 204 (234)
T ss_pred HHHh-CCCEEEEEecCCcCCHH-------HHHHHHhheEEEEEEEeecc-CCEEeEEEEEEhhc
Confidence 7776 48888888884322110 01346778899999975432 22334569999976
No 48
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=98.05 E-value=0.00015 Score=68.26 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=71.0
Q ss_pred HHHHHHHHhC--CCcEEEEeccccccCCC--CC--CccHHHHHHHHHHHHHHHHHhcCceEEEEec-cCCcC---CCCcc
Q psy4520 116 EAVEHAMYVY--DTGHVIIDNVQFMLGLS--DS--ALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRKEN---EQLTV 185 (291)
Q Consensus 116 ~~~r~~~~~~--gv~lviIDyLqlm~~~~--~~--~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk~e---k~p~l 185 (291)
+.+......+ .+++||||.++.+.... .. ...|.+.+..++..|+.+|+++||+|+++.| ..+.+ ..|.
T Consensus 180 d~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnqv~~~~~~~~~~~~- 258 (310)
T TIGR02236 180 EKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDPT- 258 (310)
T ss_pred HHHHHHHHhcCCCceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEeceeeecCccccCccc-
Confidence 3333334444 48999999997543211 11 1123445677889999999999999999999 33332 1111
Q ss_pred ccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 186 NSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 186 sDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
...|--.|+.-++..+.|.|... ....+.|.|+| .+|.|+
T Consensus 259 -~~~~G~~~~h~~~~rl~l~~~~~----~~R~~~~~k~~------~~~~~~ 298 (310)
T TIGR02236 259 -RPIGGHILGHAATFRVYLRKGKG----DKRIARLVDSP------HLPEGE 298 (310)
T ss_pred -cCCcchhhhhheeEEEEEEecCC----CeEEEEEEECC------CCCCee
Confidence 12234578999999999997432 23579999986 577765
No 49
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.97 E-value=0.00029 Score=67.40 Aligned_cols=105 Identities=10% Similarity=0.083 Sum_probs=69.0
Q ss_pred HHhCCCcEEEEeccccccCCC--CCCc--cHHHHHHHHHHHHHHHHHhcCceEEEEeccC-CcCCC-Ccc--ccc--ccc
Q psy4520 122 MYVYDTGHVIIDNVQFMLGLS--DSAL--DRFYMQDTIIQEFRAFASRSHCHVTLVIHPR-KENEQ-LTV--NSV--FGS 191 (291)
Q Consensus 122 ~~~~gv~lviIDyLqlm~~~~--~~~~--~r~~~~~~i~r~LK~~Ake~~VpVilvshpR-k~ek~-p~l--sDL--rgS 191 (291)
....++++||||.++.+.... ..+. .|.....++++.|+.+|+++||+|+++.|-+ +.+.. ... ..+ .|-
T Consensus 187 ~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNqv~~~~~~~~~~~~g~~~~p~gG 266 (316)
T TIGR02239 187 MSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVVITNQVVAQVDGAGSMFAGDPKKPIGG 266 (316)
T ss_pred hccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceEEecCCccccccCCCCcCCch
Confidence 455789999999997653211 1111 2344567899999999999999999998833 22210 000 000 122
Q ss_pred ccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 192 AKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
-.|+.-++..+.|.|.+. ....+.|.|+| .+|.|+
T Consensus 267 ~~~~h~~~~ri~l~k~~~----~~R~~~v~ksp------~~p~~~ 301 (316)
T TIGR02239 267 NIMAHASTTRLSLRKGRG----EQRICKIYDSP------CLPESE 301 (316)
T ss_pred HHHHhhccEEEEEEecCC----CeEEEEEEECC------CCCCeE
Confidence 367999999999997543 23468999986 467664
No 50
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.94 E-value=0.00032 Score=70.56 Aligned_cols=168 Identities=15% Similarity=0.187 Sum_probs=97.8
Q ss_pred HHHHHHHHc-CCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccc
Q psy4520 3 EYSLDLALQ-GVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPL 81 (291)
Q Consensus 3 q~al~la~q-G~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (291)
|++.+.|++ |.+++++|+|.+++++.++|.+ .|.++.....+.. +++.... +
T Consensus 40 qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~--~G~~~~~~~~~g~----------l~~~~~~---~------------ 92 (484)
T TIGR02655 40 QFLYNGIIHFDEPGVFVTFEESPQDIIKNARS--FGWDLQKLVDEGK----------LFILDAS---P------------ 92 (484)
T ss_pred HHHHHHHHhCCCCEEEEEEecCHHHHHHHHHH--cCCCHHHHhhcCc----------eEEEecC---c------------
Confidence 677777776 9999999999999999888643 2444432211000 0000000 0
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHH
Q psy4520 82 LDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRA 161 (291)
Q Consensus 82 ~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~ 161 (291)
.... .+ ......++.++.+.......++.+.|+||.+..+....+ ........+.+-++.
T Consensus 93 --------~~~~------~~---~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~---~~~~~r~~l~~Li~~ 152 (484)
T TIGR02655 93 --------DPEG------QD---VVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYD---AVSVVRREIFRLVAR 152 (484)
T ss_pred --------hhcc------cc---ccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcC---chHHHHHHHHHHHHH
Confidence 0000 00 112245677888888888888999999998865432221 212222334444433
Q ss_pred HHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 162 FASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 162 ~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
+ ++.++.|++++|.-.... +...-|..+--||.||.|...... ......|.|.|.|
T Consensus 153 L-~~~g~TvLLtsh~~~~~~-----~~~~~~~~e~laDgVI~L~~~~~~-~~~~R~l~I~K~R 208 (484)
T TIGR02655 153 L-KQIGVTTVMTTERIEEYG-----PIARYGVEEFVSDNVVILRNVLEG-ERRRRTLEILKLR 208 (484)
T ss_pred H-HHCCCEEEEEecCccccc-----ccccCCceeEeeeeEEEEEEEecC-CEEEEEEEEEECC
Confidence 3 567999999999543211 122223347799999999854331 2223569999987
No 51
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.93 E-value=0.00031 Score=68.06 Aligned_cols=104 Identities=11% Similarity=0.120 Sum_probs=69.3
Q ss_pred HHhCCCcEEEEeccccccCC--CCCC--ccHHHHHHHHHHHHHHHHHhcCceEEEEeccC-CcCC-----CCcccccccc
Q psy4520 122 MYVYDTGHVIIDNVQFMLGL--SDSA--LDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR-KENE-----QLTVNSVFGS 191 (291)
Q Consensus 122 ~~~~gv~lviIDyLqlm~~~--~~~~--~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR-k~ek-----~p~lsDLrgS 191 (291)
....++++||||.++.+... ...+ ..|.....++++.|+.+|+++||+|+++-|-+ +.+. .|.+.-. |-
T Consensus 214 ~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~-gG 292 (342)
T PLN03186 214 MAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPI-GG 292 (342)
T ss_pred hhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCEEEccCCccccCCCccccc-hh
Confidence 45678999999999755321 1111 12344567899999999999999999998843 2221 1111111 22
Q ss_pred ccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 192 AKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
-.|+.-++..++|.+... ....+.|.|++ .+|.|+
T Consensus 293 ~~~~h~~~tRl~L~k~~~----~~R~~~v~ksp------~~p~~e 327 (342)
T PLN03186 293 NIMAHASTTRLALRKGRG----ENRICKVISSP------CLPEAE 327 (342)
T ss_pred HHHHhhccEEEEEEecCC----CeEEEEEEECC------CCCCeE
Confidence 378899999999987432 33568999986 467654
No 52
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.89 E-value=0.00055 Score=65.51 Aligned_cols=100 Identities=7% Similarity=0.086 Sum_probs=63.9
Q ss_pred HHHhCCCcEEEEeccccccCC--CCC--CccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcc--cc-c--ccc
Q psy4520 121 AMYVYDTGHVIIDNVQFMLGL--SDS--ALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTV--NS-V--FGS 191 (291)
Q Consensus 121 ~~~~~gv~lviIDyLqlm~~~--~~~--~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~l--sD-L--rgS 191 (291)
....+++++||||.++.+... ... -..+.+...+++..|+.+|+++||+|+++-|-++....-.+ .+ . .|-
T Consensus 186 ~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvitNqv~~~~~~~~~~~~~~~~p~gG 265 (313)
T TIGR02238 186 KFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVTNQVQADPGATMTFIADPKKPIGG 265 (313)
T ss_pred HhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEECceEecCCcccccCCCCccCcch
Confidence 345578999999999855321 111 12344557789999999999999999999995543110000 01 0 112
Q ss_pred ccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 192 AKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
-.|+.-++..+.|.|.+. ....+.|.|..
T Consensus 266 ~~~~h~~~~Rl~l~k~~~----~~R~~~~~~sp 294 (313)
T TIGR02238 266 HVLAHASTTRILLRKGRG----EERVAKLYDSP 294 (313)
T ss_pred hhhhhheeEEEEEEecCC----CeEEEEEeeCC
Confidence 267889999999987532 12356677764
No 53
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.83 E-value=0.001 Score=64.16 Aligned_cols=122 Identities=11% Similarity=0.089 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCC----CCcc----HHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCC
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSD----SALD----RFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENE 181 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~----~~~~----r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek 181 (291)
+.++.++.++.+++...+++||||.+..+....+ .++. .....+..+++|..+|+++||+|+++.|-|..-.
T Consensus 117 ~~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig 196 (325)
T cd00983 117 TGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKIG 196 (325)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence 5678888888888889999999999976543211 1111 1233467889999999999999999999555321
Q ss_pred --CCccccccccccccccCccEEEEEccCc----ccc-ccceEEEEecccCCCCccCCCCCCc
Q psy4520 182 --QLTVNSVFGSAKATQESDNVLIIQQKFN----QNL-ELKKFLQALPIERCPQFRDQPPGST 237 (291)
Q Consensus 182 --~p~lsDLrgSg~IeQdAD~Vi~L~R~~~----~~~-~~~~~l~I~KnR~~~~~R~g~~G~~ 237 (291)
-..-.--.|.-.+..-|...+-|-|-.. .+. ..+..+.|.||| --|++..
T Consensus 197 ~~~g~~e~~~GG~~L~~~ss~rl~lrk~~~~k~~~~~~G~~~~~~v~Knk------~~~p~~~ 253 (325)
T cd00983 197 VMFGNPETTTGGNALKFYSSVRLDIRRIETIKDGDEVIGNRTKVKVVKNK------VAPPFKT 253 (325)
T ss_pred cccCCCccCCCchHHhhhcceEEEEEeecccccCCcccccEEEEEEEecc------cCCCCCc
Confidence 0001112233347788888888877542 111 234569999997 3555554
No 54
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.81 E-value=0.0013 Score=63.97 Aligned_cols=99 Identities=9% Similarity=0.078 Sum_probs=66.2
Q ss_pred HHHHhCCCcEEEEeccccccCC--CCCC--ccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC-cCC-----CCcccccc
Q psy4520 120 HAMYVYDTGHVIIDNVQFMLGL--SDSA--LDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK-ENE-----QLTVNSVF 189 (291)
Q Consensus 120 ~~~~~~gv~lviIDyLqlm~~~--~~~~--~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk-~ek-----~p~lsDLr 189 (291)
.....+++++||||.++.+... ...+ ..+.+.+.++++.|+++|+++||+|++..|-+. .+. .|. --.
T Consensus 215 ~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTNqv~~~~~~~~~~~~~~--~pa 292 (344)
T PLN03187 215 AKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDPK--KPA 292 (344)
T ss_pred HHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEecEEEcCCcccccCCCC--CCC
Confidence 3455678999999999754321 1111 245566788999999999999999999998432 221 111 122
Q ss_pred ccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 190 GSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 190 gSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
|.-.|..-+...+.|.+... ....+.|.|.+
T Consensus 293 gG~~~~h~~~~Rl~l~k~~~----~~R~~~v~ksp 323 (344)
T PLN03187 293 GGHVLAHAATIRLMLRKGKG----EQRVCKVFDAP 323 (344)
T ss_pred CchhhheeeeEEEEEEcCCC----CeEEEEEEECC
Confidence 33468888888888876432 23468888976
No 55
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.79 E-value=0.0027 Score=57.87 Aligned_cols=157 Identities=11% Similarity=0.168 Sum_probs=89.8
Q ss_pred HHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccch
Q psy4520 3 EYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLL 82 (291)
Q Consensus 3 q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 82 (291)
|++.+++.+|.+++++|+|.++.++...+. ..|.++......
T Consensus 43 ~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~--~~g~~~~~~~~~------------------------------------ 84 (230)
T PRK08533 43 RLAYGFLQNGYSVSYVSTQLTTTEFIKQMM--SLGYDINKKLIS------------------------------------ 84 (230)
T ss_pred HHHHHHHhCCCcEEEEeCCCCHHHHHHHHH--HhCCchHHHhhc------------------------------------
Confidence 677888889999999999999999988872 233333211100
Q ss_pred hhhhhHHHHHHhhcCCCeEEEcCC---CCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHH
Q psy4520 83 DNLDKFDEYSDWFKTLPMYFLTFH---GPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEF 159 (291)
Q Consensus 83 ~~~~~~~~a~~~~~~~pl~i~d~~---g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~L 159 (291)
+.+ .++.-.+ +....+..+..+......++.+++|||++.-..... .+ ...+..+.+.|
T Consensus 85 ----------~~l----~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~---~d-~~~~~~l~~~l 146 (230)
T PRK08533 85 ----------GKL----LYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISND---AS-EVAVNDLMAFF 146 (230)
T ss_pred ----------CcE----EEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCC---cc-hHHHHHHHHHH
Confidence 000 0000000 101123333333344445678999999996543211 12 23345677788
Q ss_pred HHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 160 RAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 160 K~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
+.++++ ++ +++++|....-.. ...+.++--||.||.|...... ..-...+.|.|.|
T Consensus 147 ~~l~~~-g~-tvi~t~~~~~~~~------~~~~~~~~~~DgvI~L~~~~~~-~~~~R~i~V~KmR 202 (230)
T PRK08533 147 KRISSL-NK-VIILTANPKELDE------SVLTILRTAATMLIRLEVKVFG-GDLKNSAKIVKYN 202 (230)
T ss_pred HHHHhC-CC-EEEEEeccccccc------ccceeEEEeeeEEEEEEEeecC-CEEEEEEEEEEec
Confidence 888765 77 4455553322110 1123578899999999866543 2224569999987
No 56
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.78 E-value=0.00068 Score=65.28 Aligned_cols=114 Identities=9% Similarity=0.064 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCC----CCcc----HHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC-
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSD----SALD----RFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN- 180 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~----~~~~----r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e- 180 (291)
+.++.+..+..+++..++++||||.++.+....+ .+++ .....+.++++|..+|+++||+|+++.|-|..-
T Consensus 117 ~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~~g 196 (321)
T TIGR02012 117 TGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIREKIG 196 (321)
T ss_pred CHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeccC
Confidence 4677788888888888999999999976543211 0111 223345688999999999999999999966532
Q ss_pred ---CCCccccccccccccccCccEEEEEccCc----cc-cccceEEEEecccC
Q psy4520 181 ---EQLTVNSVFGSAKATQESDNVLIIQQKFN----QN-LELKKFLQALPIER 225 (291)
Q Consensus 181 ---k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~----~~-~~~~~~l~I~KnR~ 225 (291)
..|.. -.|.-++..-+-..+-+.|-.. .+ ..+...+.|.|||.
T Consensus 197 ~~~~~~e~--~~GG~aL~~~ss~r~~lrr~~~iK~~~~~~g~~~~~~v~Knk~ 247 (321)
T TIGR02012 197 VMFGNPET--TTGGRALKFYASVRLDIRRIGQVKQGEEVVGNRTKVKVVKNKV 247 (321)
T ss_pred cccCCCcc--CcCccHHHHHHhHhHhhhhhhccccCCceeccEEEEEEEECCC
Confidence 11111 1122224555555566655332 11 12346699999984
No 57
>PRK09354 recA recombinase A; Provisional
Probab=97.57 E-value=0.0037 Score=60.92 Aligned_cols=113 Identities=9% Similarity=0.065 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCC----CCCc----cHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC-
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLS----DSAL----DRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN- 180 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~----~~~~----~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e- 180 (291)
+.++.+..++.+++..++++||||.+..+.... +.++ ......+..+++|..+++++||+|+++.|-|..-
T Consensus 122 ~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~~ig 201 (349)
T PRK09354 122 TGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIG 201 (349)
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeeeccc
Confidence 477788888888888999999999997654321 1111 1223455678999999999999999999966531
Q ss_pred ---CCCccccccccccccccCccEEEEEccCc----cc-cccceEEEEeccc
Q psy4520 181 ---EQLTVNSVFGSAKATQESDNVLIIQQKFN----QN-LELKKFLQALPIE 224 (291)
Q Consensus 181 ---k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~----~~-~~~~~~l~I~KnR 224 (291)
..|.. --|--++..-|-..+-|.|-.. .+ ...+..+.|.|||
T Consensus 202 ~~~g~pe~--~~GG~aL~~~ss~rl~lrr~~~iK~~~~~~G~~~r~~vvKnk 251 (349)
T PRK09354 202 VMFGNPET--TTGGNALKFYASVRLDIRRIGTIKDGDEVIGNRTKVKVVKNK 251 (349)
T ss_pred cccCCCCc--CCCchhhHhhheeeeEEecccccccCCceecceEEEEEEecc
Confidence 12211 1111225566666677776542 11 1234568999997
No 58
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.48 E-value=0.0032 Score=58.38 Aligned_cols=117 Identities=9% Similarity=0.134 Sum_probs=73.3
Q ss_pred eEEEcCCCCCCHHHHHHHHHH---HHHhCCCcEEEEeccccccC----CCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEH---AMYVYDTGHVIIDNVQFMLG----LSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~---~~~~~gv~lviIDyLqlm~~----~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+++.... +.+++.+.... ......+++||||.+...-. ..+....|......+++.||.+|++++|+|++
T Consensus 107 I~v~~~~---~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvv 183 (256)
T PF08423_consen 107 IFVIRVF---DLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYNIAVVV 183 (256)
T ss_dssp EEEEE-S---SHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred eeeeecC---CHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCCceEEe
Confidence 4554432 34444444433 34567899999999955421 11111356788899999999999999999999
Q ss_pred Eec-cCCcCCCCcccc--c---cccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 173 VIH-PRKENEQLTVNS--V---FGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 173 vsh-pRk~ek~p~lsD--L---rgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
.-| ..+.+.. .+.+ . .+.-.|..-++.-++|.|... ....+.|.|..
T Consensus 184 TNqv~~~~~~~-~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~~----~~R~~~i~ksp 236 (256)
T PF08423_consen 184 TNQVTTKIDSN-SLFDGDRLKPALGHSWSHAVTTRLFLSKGRG----SERVATIVKSP 236 (256)
T ss_dssp EEEECSSTT-----SSTTSEEETTHHHHHHHSSEEEEEEECST----TEEEEEEEECS
T ss_pred eceeeecCCcc-cccccccceecCcchhhhhccEEEEEEeCCC----CeEEEEEeECC
Confidence 988 3333311 1111 0 233458899999999988542 23568888875
No 59
>PTZ00035 Rad51 protein; Provisional
Probab=97.37 E-value=0.0081 Score=58.06 Aligned_cols=104 Identities=10% Similarity=0.136 Sum_probs=65.8
Q ss_pred HhCCCcEEEEeccccccCC--CCCC--ccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC-cCCC-C-cccc--cccccc
Q psy4520 123 YVYDTGHVIIDNVQFMLGL--SDSA--LDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK-ENEQ-L-TVNS--VFGSAK 193 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~--~~~~--~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk-~ek~-p-~lsD--LrgSg~ 193 (291)
...++++||||.++.+... ...+ ..|.+...++++.|+++|+++||+|+++-|-+. .+.. . .-.. --|--.
T Consensus 210 ~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~gG~~ 289 (337)
T PTZ00035 210 AEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQVMADVDGASMFVADPKKPIGGHI 289 (337)
T ss_pred hccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecceEEecCCccccCCCCccCCchHH
Confidence 4578999999999764321 1111 234556788999999999999999999988332 2210 0 0000 112234
Q ss_pred ccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 194 ATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 194 IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
|..-++..+.|.|... ....+.|.|++ +.|.|.
T Consensus 290 ~~h~~~~Rl~l~k~~~----~~R~~~i~ksp------~~p~~~ 322 (337)
T PTZ00035 290 IAHASTTRLSLRKGRG----EQRICKIYDSP------NLPESE 322 (337)
T ss_pred HHhheeEEEEEEecCC----CeeEEEEEECC------CCCCee
Confidence 6677788888876532 22457788875 566654
No 60
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.29 E-value=0.005 Score=56.47 Aligned_cols=171 Identities=15% Similarity=0.124 Sum_probs=106.3
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccc
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPL 81 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (291)
.|++.+.|+.|.+|.+.|+|.+++.+...+.+ -|-++.....+ ..+ .+.
T Consensus 41 ~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~--~g~d~~~~~~~-g~l---------~i~------------------- 89 (260)
T COG0467 41 LQFLYEGAREGEPVLYVSTEESPEELLENARS--FGWDLEVYIEK-GKL---------AIL------------------- 89 (260)
T ss_pred HHHHHHHHhcCCcEEEEEecCCHHHHHHHHHH--cCCCHHHHhhc-CCE---------EEE-------------------
Confidence 47889999999999999999999999877665 44443321100 000 000
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHH
Q psy4520 82 LDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRA 161 (291)
Q Consensus 82 ~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~ 161 (291)
+.+...... .-++... ....+.+...++.++...+...+|||++..+.-.. +.....-.++..|++
T Consensus 90 ----d~~~~~~~~----~~~~~~~--~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~----~~~~~~r~~~~~l~~ 155 (260)
T COG0467 90 ----DAFLSEKGL----VSIVVGD--PLDLEELLDRIREIVEKEGADRVVIDSITELTLYL----NDPALVRRILLLLKR 155 (260)
T ss_pred ----Ecccccccc----ccccccC--CccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhc----CchHHHHHHHHHHHH
Confidence 000000000 0011111 24678899999999999999999999997433211 222333568999999
Q ss_pred HHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 162 FASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 162 ~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
+.++++|-.+++..-...+..+. |-.+--+|.||-|.............+.|.|-|
T Consensus 156 ~~~~~~~t~~~~~~~~~~~~~~~-------~~~~~~vdgvI~l~~~~~~~~~~r~~~~i~k~r 211 (260)
T COG0467 156 FLKKLGVTSLLTTEAPVEERGES-------GVEEYIVDGVIRLDLKEIEGGGDRRYLRILKMR 211 (260)
T ss_pred HHHhCCCEEEEEecccccCCCcc-------ceEEEEEEEEEEEeeecccCceEEEEEEEEecc
Confidence 99999988888776433222222 445558999999987654322222288999976
No 61
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.0073 Score=58.67 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN 180 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e 180 (291)
+..+...-.++..-++||||+.=- ...+++ .-..++..++++++++|++++|+|+.+.|+-|..
T Consensus 182 l~rRfek~~~Q~rp~~vViDp~v~-f~~G~s--~s~vqv~~fi~~~rkla~~l~caIiy~hHtskss 245 (402)
T COG3598 182 LYRRFEKILEQKRPDFVVIDPFVA-FYEGKS--ISDVQVKEFIKKTRKLARNLECAIIYIHHTSKSS 245 (402)
T ss_pred HHHHHHHHHHHhCCCeEEEcchhh-hcCCcc--chhHHHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence 344444444555568999999822 222222 2236788999999999999999999999987776
No 62
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.61 E-value=0.073 Score=51.46 Aligned_cols=118 Identities=13% Similarity=0.117 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCC-------C-CCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC-
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLS-------D-SALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN- 180 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~-------~-~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e- 180 (291)
+.++.++.++.+.+...+++||||.+-.+.+.. + .-..+....+.++|+|..+..+.||+++.+-|-|..-
T Consensus 115 ~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R~~ig 194 (322)
T PF00154_consen 115 TGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGLQARLMSQALRKLTPLLSKSNTTLIFINQVRDKIG 194 (322)
T ss_dssp SHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHHHHHHHHHTTT-EEEEEEEESSSSS
T ss_pred cHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccccccCcchHHHHHHHHHHHHHHHHhhceEEEEeehHHHHHh
Confidence 468888999999888889999999995553211 1 1124567788899999999999999999999977753
Q ss_pred ---CCCccccccccccccccCccEEEEEccCc-c---c-cccceEEEEecccCCCCc
Q psy4520 181 ---EQLTVNSVFGSAKATQESDNVLIIQQKFN-Q---N-LELKKFLQALPIERCPQF 229 (291)
Q Consensus 181 ---k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~-~---~-~~~~~~l~I~KnR~~~~~ 229 (291)
..|.. -.|--++.--|++.+-+-|-.. . + ......+.|.|||.++.|
T Consensus 195 ~~~g~~~~--t~GG~alkfyas~rl~i~k~~~ik~~~~~iG~~~~vkv~KnKva~P~ 249 (322)
T PF00154_consen 195 VMFGNPET--TPGGRALKFYASVRLEIRKKEQIKEGDEVIGNKIKVKVVKNKVAPPF 249 (322)
T ss_dssp SSSSSSSC--CTSHHHHHHHCSEEEEEEEEEEEEETTCECEEEEEEEEEEESSS-TT
T ss_pred hccCCCcC--CCCCchhhhhhhhHHhhhcccccccCCcccccEEEEEEEEcccCCCc
Confidence 33432 4577778888999999988653 1 1 123456999999844434
No 63
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.34 E-value=0.037 Score=59.25 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCC---C-Ccc----HHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSD---S-ALD----RFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~---~-~~~----r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
+.++.+..++.+++..++++||||.++-+....+ . +.. +...++.++++|..+++++||.|++.-|-|.
T Consensus 122 ~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~ 198 (790)
T PRK09519 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRD 198 (790)
T ss_pred CHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeccee
Confidence 4567778888888888999999999986653111 0 111 1223356889999999999999999988554
No 64
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.07 E-value=0.026 Score=54.11 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
.+......++.++-+..|++++|||+++-+..+. ...|.+++..||.|+.+++|||+++
T Consensus 128 ~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs------~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 128 DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS------YRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc------HHHHHHHHHHHHHHhhccCCCeEEe
Confidence 3567777888788899999999999997655322 2457889999999999999999988
No 65
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.80 E-value=0.29 Score=45.26 Aligned_cols=161 Identities=14% Similarity=0.183 Sum_probs=93.7
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccc
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPL 81 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (291)
.|+++-++.+|++|+..|-||+.+.....|-+- +.+..+...... -+||.. +
T Consensus 46 qr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl--~ydv~~~~l~G~---------l~~~~~-~---------------- 97 (235)
T COG2874 46 QRFAYGFLMNGYRVTYVSTELTVREFIKQMESL--SYDVSDFLLSGR---------LLFFPV-N---------------- 97 (235)
T ss_pred HHHHHHHHhCCceEEEEEechhHHHHHHHHHhc--CCCchHHHhcce---------eEEEEe-c----------------
Confidence 368888999999999999999999888776542 222221110000 000000 0
Q ss_pred hhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHH
Q psy4520 82 LDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRA 161 (291)
Q Consensus 82 ~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~ 161 (291)
--|+...+ -+..-+++..-...+...-++||||.|...... +....+-+++..+|.
T Consensus 98 ---------------~~~~~~~~----~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~-----~~~~~vl~fm~~~r~ 153 (235)
T COG2874 98 ---------------LEPVNWGR----RSARKLLDLLLEFIKRWEKDVIIIDSLSAFATY-----DSEDAVLNFMTFLRK 153 (235)
T ss_pred ---------------ccccccCh----HHHHHHHHHHHhhHHhhcCCEEEEecccHHhhc-----ccHHHHHHHHHHHHH
Confidence 00111111 122333333333344667799999999765432 234678899999999
Q ss_pred HHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEecc
Q psy4520 162 FASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPI 223 (291)
Q Consensus 162 ~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~Kn 223 (291)
|+-+-. -|++-+||-.... -.+ ..|.+-||..+.|+-.+-. ...+..+.|.|-
T Consensus 154 l~d~gK-vIilTvhp~~l~e-~~~------~rirs~~d~~l~L~~~~~G-g~~~~~~~i~K~ 206 (235)
T COG2874 154 LSDLGK-VIILTVHPSALDE-DVL------TRIRSACDVYLRLRLEELG-GDLIKVLEIVKY 206 (235)
T ss_pred HHhCCC-EEEEEeChhhcCH-HHH------HHHHHhhheeEEEEhhhhC-CeeeEEEEEeee
Confidence 996544 4666667655420 011 3477899999999865431 112345777774
No 66
>PF13479 AAA_24: AAA domain
Probab=94.74 E-value=0.25 Score=44.25 Aligned_cols=97 Identities=10% Similarity=0.107 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHH-HhCCCcEEEEeccccc--------cCC--C--CC-C----ccHH-HHHHHHHHHHHHHHHhcCceE
Q psy4520 110 PLKLVMEAVEHAM-YVYDTGHVIIDNVQFM--------LGL--S--DS-A----LDRF-YMQDTIIQEFRAFASRSHCHV 170 (291)
Q Consensus 110 ~i~~i~~~~r~~~-~~~gv~lviIDyLqlm--------~~~--~--~~-~----~~r~-~~~~~i~r~LK~~Ake~~VpV 170 (291)
+++++++....+. ..++.+.||||.+..+ +.. . .+ + ...| ....++.+-++.+-+.+++||
T Consensus 51 s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l~~~~~~~V 130 (213)
T PF13479_consen 51 SWEDFLEALDELEEDEADYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKLLNALGKNV 130 (213)
T ss_pred CHHHHHHHHHHHHhccCCCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHHHHHCCCcE
Confidence 7888888776643 3478999999988543 100 0 00 0 1223 334446666666777899999
Q ss_pred EEEecc--CCc-C------CCCccccccccccccccCccEEEEEcc
Q psy4520 171 TLVIHP--RKE-N------EQLTVNSVFGSAKATQESDNVLIIQQK 207 (291)
Q Consensus 171 ilvshp--Rk~-e------k~p~lsDLrgSg~IeQdAD~Vi~L~R~ 207 (291)
++++|. .+. + -+|.+.. +-...+...+|.|..+...
T Consensus 131 I~tah~~~~~~~~~~~~~~~~~~l~~-k~~~~l~~~~D~V~~l~~~ 175 (213)
T PF13479_consen 131 IFTAHAKEEEDEDGGKYTRYKPKLGK-KVRNELPGWFDVVGRLRVE 175 (213)
T ss_pred EEEEEEEEEEcCCCCceeEEeeccCh-hHHhhhhecccEEEEEEEE
Confidence 999993 333 1 2344443 4457789999999777654
No 67
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=93.94 E-value=0.31 Score=48.80 Aligned_cols=104 Identities=12% Similarity=0.104 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccc
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSV 188 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDL 188 (291)
..++.+++-+......-.--+|++|.|-.+.+.-....+.-+.+..+...|..||++.++++++|+-..+.
T Consensus 89 l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiieyla~~~~~~ed~e~l~~dLv~lard~g~~LIlVsEsa~~--------- 159 (484)
T PF07088_consen 89 LDIDSFRDFVDKINEAGKKPIIAFDSWDAIIEYLAEEHDEPEDIETLTNDLVELARDMGINLILVSESAEN--------- 159 (484)
T ss_pred cCHHHHHHHHHHhhhcccCcEEEEecHHHHHHHhhhhhcCcHHHHHHHHHHHHHHhhcCceEEEEEecCCC---------
Confidence 45677777776432223345889999865543111011222336668889999999999999999876553
Q ss_pred cccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 189 FGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 189 rgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
-.++--+|=|+-|+-...++..-..+|.+-|-|
T Consensus 160 ---~~LdYivDGVVTL~v~~derGR~~R~L~LeKLR 192 (484)
T PF07088_consen 160 ---EPLDYIVDGVVTLQVKNDERGRTRRYLRLEKLR 192 (484)
T ss_pred ---CcchheeeeEEEEEeccccCCceEEEEEehhhc
Confidence 347788999999964333333445679999976
No 68
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.30 E-value=0.23 Score=39.69 Aligned_cols=56 Identities=21% Similarity=0.270 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.+.+++.+.+.....+++..+||||++|.+. . ...+..|+.++.+.+|+|+++.+|
T Consensus 70 ~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~----------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 70 QTSDELRSLLIDALDRRRVVLLVIDEADHLF--S----------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp S-HHHHHHHHHHHHHHCTEEEEEEETTHHHH--T----------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEeChHhcC--C----------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 4688888988888888988999999998753 1 457888899999999999999887
No 69
>PRK04296 thymidine kinase; Provisional
Probab=89.09 E-value=1.5 Score=38.64 Aligned_cols=78 Identities=15% Similarity=0.048 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVF 189 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLr 189 (291)
..+++...++. ...+.++||||+.|++.. ++ +..|-+.++..+++|++..+...-...| .-
T Consensus 64 ~~~~~~~~~~~--~~~~~dvviIDEaq~l~~---------~~----v~~l~~~l~~~g~~vi~tgl~~~~~~~~----f~ 124 (190)
T PRK04296 64 SDTDIFELIEE--EGEKIDCVLIDEAQFLDK---------EQ----VVQLAEVLDDLGIPVICYGLDTDFRGEP----FE 124 (190)
T ss_pred ChHHHHHHHHh--hCCCCCEEEEEccccCCH---------HH----HHHHHHHHHHcCCeEEEEecCcccccCc----Cc
Confidence 45566665554 455689999999997521 11 2346666679999999987643322212 11
Q ss_pred ccccccccCccEEEEEc
Q psy4520 190 GSAKATQESDNVLIIQQ 206 (291)
Q Consensus 190 gSg~IeQdAD~Vi~L~R 206 (291)
++..+--.||+|..|.-
T Consensus 125 ~~~~L~~~aD~V~~l~~ 141 (190)
T PRK04296 125 GSPYLLALADKVTELKA 141 (190)
T ss_pred hHHHHHHhcCeEEEeeE
Confidence 23455567999998853
No 70
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=86.45 E-value=8 Score=39.44 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=52.5
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
+.+.++.++-.+..+|..+-++. +.++++++++++ .+.|...+.||++. .+.. .++.|+..|.+
T Consensus 216 ~a~~~a~~eTG~~k~y~~NiT~~-~~~em~~ra~~~-~e~G~~~~mv~~~~--~G~~------------~l~~l~~~~~~ 279 (468)
T PRK04208 216 EAIDKAEAETGERKGHYLNVTAP-TMEEMYKRAEFA-KELGSPIVMIDVVT--AGWT------------ALQSLREWCRD 279 (468)
T ss_pred HHHHHHHHhhCCcceEEEecCCC-CHHHHHHHHHHH-HHhCCCEEEEeccc--cccH------------HHHHHHHhhhc
Confidence 34445666666778999886663 589999999997 56899999999983 2211 37778888888
Q ss_pred cCceEEE
Q psy4520 166 SHCHVTL 172 (291)
Q Consensus 166 ~~VpVil 172 (291)
.++||+.
T Consensus 280 ~~l~Iha 286 (468)
T PRK04208 280 NGLALHA 286 (468)
T ss_pred CCcEEEe
Confidence 8888873
No 71
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=85.98 E-value=2.2 Score=40.58 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=50.7
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhCC--CcEEEEeccccccCCCC----CCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMYVYD--TGHVIIDNVQFMLGLSD----SALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~~~g--v~lviIDyLqlm~~~~~----~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
+++.-.. +.++-+..+..+.+-.. +++||||.+........ ....+.+..+..++.|..+|+++|+.|++.
T Consensus 116 l~v~~~~---~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~ 192 (279)
T COG0468 116 LLVSQPD---TGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTAVIFT 192 (279)
T ss_pred eeEecCC---CHHHHHHHHHHHHHhccCCCCEEEEecCcccchhhhcCcchHHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 5554432 34555555555555555 99999999964432211 112456777889999999999999999999
Q ss_pred eccC
Q psy4520 174 IHPR 177 (291)
Q Consensus 174 shpR 177 (291)
-|-|
T Consensus 193 NQv~ 196 (279)
T COG0468 193 NQVR 196 (279)
T ss_pred Ccee
Confidence 8743
No 72
>KOG1434|consensus
Probab=85.83 E-value=5.7 Score=38.03 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=41.8
Q ss_pred HhCC-CcEEEEecccccc--CCCCCC--ccHHHHHHHHHHHHHHHHHhcCceEEEEec-cCCc
Q psy4520 123 YVYD-TGHVIIDNVQFML--GLSDSA--LDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRKE 179 (291)
Q Consensus 123 ~~~g-v~lviIDyLqlm~--~~~~~~--~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk~ 179 (291)
..+| .++||||.+-+.- +-..++ ..|++-.+.+..+|-.+|+|+||.|++.-| ..+.
T Consensus 207 se~g~~rlvIVDsIma~FRvDy~grgeLseRqqkLn~ml~kl~~laeefnvAVfltNQvttdp 269 (335)
T KOG1434|consen 207 SEHGKYRLVIVDSIMALFRVDYDGRGELSERQQKLNQMLQKLNKLAEEFNVAVFLTNQVTTDP 269 (335)
T ss_pred hhcCcEEEEEEeceehheeecccccccHHHHHHHHHHHHHHHHHHHHhccEEEEEecceecCC
Confidence 4554 7899999994332 111111 367888899999999999999999999977 4443
No 73
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=85.70 E-value=7.5 Score=39.00 Aligned_cols=70 Identities=19% Similarity=0.148 Sum_probs=51.7
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
+.+.++.++-.+..+|..+-++. .++++++++++ .+.|...+.||++. .+.. .++.|+..+++
T Consensus 187 ~a~~~a~~eTG~~~~y~~NiT~~--~~em~~ra~~a-~e~G~~~~mv~~~~--~G~~------------~l~~l~~~~~~ 249 (412)
T cd08213 187 KARDKAEAETGERKAYLANITAP--VREMERRAELV-ADLGGKYVMIDVVV--AGWS------------ALQYLRDLAED 249 (412)
T ss_pred HHHHHHHHhhCCcceEEEEecCC--HHHHHHHHHHH-HHhCCCeEEeeccc--cChH------------HHHHHHHhccc
Confidence 44555666666778999997763 89999999986 56899999999983 2211 36777777777
Q ss_pred cCceEEE
Q psy4520 166 SHCHVTL 172 (291)
Q Consensus 166 ~~VpVil 172 (291)
.++||+.
T Consensus 250 ~~l~iha 256 (412)
T cd08213 250 YGLAIHA 256 (412)
T ss_pred cCeEEEE
Confidence 7788774
No 74
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=85.18 E-value=2 Score=39.05 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+..++.+-+.+......++.|+||+-|+.. .+++..|..+|-++|+||++--.
T Consensus 66 ~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~-------------~~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 66 SDTDIFDEIAALHEKPPVDCVLIDEAQFFD-------------EELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred ChHHHHHHHHhcccCCCcCEEEEehhHhCC-------------HHHHHHHHHHHhhcCCEEEEecc
Confidence 345666666554333348999999999863 24788999999999999998765
No 75
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=84.83 E-value=8.5 Score=38.60 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=51.7
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
+.+.++.++-.+..+|..+-++. .++++++++++ .+.|...+.||++. .+.. .++.|+..|.+
T Consensus 200 ~a~~~a~~eTG~~~~ya~NiT~~--~~em~~ra~~~-~~~G~~~~mv~~~~--~G~~------------~l~~l~~~~~~ 262 (412)
T TIGR03326 200 KVRDKVEAETGERKEYLANITAP--VREMERRAELV-ADLGGQYVMVDVVV--CGWS------------ALQYIRELTED 262 (412)
T ss_pred HHHHHHHHHhCCcceEEEEecCC--HHHHHHHHHHH-HHhCCCeEEEEeec--cchH------------HHHHHHHhhcc
Confidence 44455666666778999998774 79999999986 66899999999983 2211 36777777777
Q ss_pred cCceEEE
Q psy4520 166 SHCHVTL 172 (291)
Q Consensus 166 ~~VpVil 172 (291)
.++||+.
T Consensus 263 ~~l~ih~ 269 (412)
T TIGR03326 263 LGLAIHA 269 (412)
T ss_pred CCeEEEE
Confidence 7787774
No 76
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=84.76 E-value=6.3 Score=37.24 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=49.7
Q ss_pred HHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccE
Q psy4520 122 MYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNV 201 (291)
Q Consensus 122 ~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~V 201 (291)
.--+..+++|+|+=. .+- |- ....++.+-|+.+|++.++.|++.+|.=. .+++.||.|
T Consensus 150 aL~~~P~lliLDEPt--~GL-----Dp-~~~~~~~~~l~~l~~~g~~tvlissH~l~--------------e~~~~~d~v 207 (293)
T COG1131 150 ALLHDPELLILDEPT--SGL-----DP-ESRREIWELLRELAKEGGVTILLSTHILE--------------EAEELCDRV 207 (293)
T ss_pred HHhcCCCEEEECCCC--cCC-----CH-HHHHHHHHHHHHHHhCCCcEEEEeCCcHH--------------HHHHhCCEE
Confidence 345678999999983 222 21 44567999999999999999999999422 277889999
Q ss_pred EEEEccC
Q psy4520 202 LIIQQKF 208 (291)
Q Consensus 202 i~L~R~~ 208 (291)
+++++-.
T Consensus 208 ~il~~G~ 214 (293)
T COG1131 208 IILNDGK 214 (293)
T ss_pred EEEeCCE
Confidence 9998754
No 77
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=83.23 E-value=12 Score=37.56 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=49.9
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
+.+.++.++-.+..+|..+-++. +.++++++++++ .+.|...+.||++. .+.. .++.|+..+.+
T Consensus 188 ~a~~~a~~eTG~~~~y~~NiT~~-~~~em~~ra~~~-~~~G~~~~mv~~~~--~G~~------------~l~~l~~~~~~ 251 (414)
T cd08206 188 EAMDKAEAETGEAKGHYLNITAD-TPEEMIKRAEFA-KELGSVIVMVDGVT--AGWT------------AIQSARRWCPD 251 (414)
T ss_pred HHHHHHHHhhCCcceEEeccCCC-cHHHHHHHHHHH-HHhCCcEEEEeeec--ccHH------------HHHHHHHhccc
Confidence 44455666666778999887763 589999999986 67999999999983 2211 35566666556
Q ss_pred cCceEE
Q psy4520 166 SHCHVT 171 (291)
Q Consensus 166 ~~VpVi 171 (291)
.++||+
T Consensus 252 ~~l~ih 257 (414)
T cd08206 252 NGLALH 257 (414)
T ss_pred cCeEEE
Confidence 677766
No 78
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function.
Probab=82.86 E-value=18 Score=33.55 Aligned_cols=89 Identities=18% Similarity=0.267 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHh---CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHH-HHHHhcCceEEEEeccCCc--CCCC
Q psy4520 110 PLKLVMEAVEHAMYV---YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFR-AFASRSHCHVTLVIHPRKE--NEQL 183 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~---~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK-~~Ake~~VpVilvshpRk~--ek~p 183 (291)
++..+.+.++..... .+--+||||.+..+...+- +. .++=.+++.++ .++.+.++.++++.|.-.. +..+
T Consensus 116 ~L~~L~~~I~~~l~~~~~~~~~~liIDdls~Ll~lG~---s~-~~vldF~~ycra~l~~~~~~~lVvl~h~d~~~~~e~~ 191 (249)
T PF09807_consen 116 SLRSLYEFIQEALSPADSNGSVVLIIDDLSVLLSLGV---SS-NDVLDFIHYCRATLCSESNGSLVVLVHCDIDDEDEEN 191 (249)
T ss_pred hHHHHHHHHHHHHhhccCCCCeEEEEeCHHHHHHcCC---CH-HHHHHHHHHHHHHhccccCCCEEEEEecCCCCccchH
Confidence 577777777665544 3456999999988776432 22 34557899999 7999999999988883322 1222
Q ss_pred ccccccccccccccCccEEEEEc
Q psy4520 184 TVNSVFGSAKATQESDNVLIIQQ 206 (291)
Q Consensus 184 ~lsDLrgSg~IeQdAD~Vi~L~R 206 (291)
.. + .-.+...||.++-+..
T Consensus 192 ~~--l--~~~L~h~a~l~i~v~~ 210 (249)
T PF09807_consen 192 DL--L--LNSLAHMADLVITVEP 210 (249)
T ss_pred HH--H--HHHHHHHhcEEEEecC
Confidence 20 1 2457788999998853
No 79
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=82.35 E-value=17 Score=37.21 Aligned_cols=70 Identities=7% Similarity=0.008 Sum_probs=49.7
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
+.+.++.++=.+..+|..+-++ -+.++++++++++ .+.|...+.||.+. .+.. .++.|+..|++
T Consensus 223 ~a~~~a~~eTG~~~~y~~NiTa-~~~~em~~ra~~a-~e~G~~~~mv~~~~--~G~~------------al~~l~~~~~~ 286 (475)
T CHL00040 223 EAIYKAQAETGEIKGHYLNATA-GTCEEMYKRAVFA-RELGVPIVMHDYLT--GGFT------------ANTSLAHYCRD 286 (475)
T ss_pred HHHHHHHHhhCCcceeeeccCC-CCHHHHHHHHHHH-HHcCCceEEEeccc--cccc------------hHHHHHHHhhh
Confidence 3444556665566786655442 1689999999986 56899999999983 3321 37788888888
Q ss_pred cCceEE
Q psy4520 166 SHCHVT 171 (291)
Q Consensus 166 ~~VpVi 171 (291)
.++||+
T Consensus 287 ~~l~Ih 292 (475)
T CHL00040 287 NGLLLH 292 (475)
T ss_pred cCceEE
Confidence 888876
No 80
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=82.18 E-value=16 Score=37.15 Aligned_cols=70 Identities=11% Similarity=0.154 Sum_probs=50.4
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
+.+.++.++=.+..+|..+-++. +.++++++++++ .+.|...+.||.+ . +-. .++.|+..|++
T Consensus 201 ~a~~~a~~eTG~~~~y~~NiTa~-~~~em~~ra~~a-~~~G~~~~mv~~~--~-G~~------------~l~~l~~~a~~ 263 (450)
T cd08212 201 EAVNKAQAETGEVKGHYLNVTAG-TMEEMYKRAEFA-KELGSPIIMHDLL--T-GFT------------AIQSLAKWCRD 263 (450)
T ss_pred HHHHHHHHhhCCcceeeccccCC-CHHHHHHHHHHH-HHhCCCeEeeecc--c-ccc------------hHHHHHHHhhh
Confidence 34445566655667888876532 589999999986 5579999999955 2 322 37788888888
Q ss_pred cCceEEE
Q psy4520 166 SHCHVTL 172 (291)
Q Consensus 166 ~~VpVil 172 (291)
.++||+.
T Consensus 264 ~~l~Iha 270 (450)
T cd08212 264 NGMLLHL 270 (450)
T ss_pred cCceEEe
Confidence 8888773
No 81
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.99 E-value=13 Score=33.21 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=45.2
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|.... +..-||.|+
T Consensus 151 l~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~--------------~~~~~d~v~ 208 (235)
T cd03261 151 LALDPELLLYDEPT--AG-----LDP-IASGVIDDLIRSLKKELGLTSIMVTHDLDT--------------AFAIADRIA 208 (235)
T ss_pred HhcCCCEEEecCCc--cc-----CCH-HHHHHHHHHHHHHHHhcCcEEEEEecCHHH--------------HHHhcCEEE
Confidence 34567999999983 11 122 345678889999998889999999995432 456689999
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 209 ~l~~ 212 (235)
T cd03261 209 VLYD 212 (235)
T ss_pred EEEC
Confidence 9864
No 82
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=81.77 E-value=8.3 Score=37.24 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=49.9
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
+.+.++.++=.+-.+|..+-++. ++++++++++++ .+.|...+.||++. .+- ..++.|...+++
T Consensus 70 ~a~~~a~~eTG~~~ly~~NiT~~-~~~em~~ra~~a-~~~G~~~vmv~~~~--~G~------------~~~~~l~~~~~~ 133 (309)
T PF00016_consen 70 EAVDRAEEETGEKKLYAANITAD-TPDEMIERAEYA-KEAGANAVMVNVLT--AGF------------SALQSLAEDARD 133 (309)
T ss_dssp HHHHHHHHHHSS--EEEEEE-SS-SHHHHHHHHHHH-HHHTGSEEEEEHHH--HCH------------HHHHHHHHHHHH
T ss_pred hhhhccccccceecceecccccc-cHHHHHHhhhhh-hhhccchhhccccc--ccc------------cccchhhhhhcc
Confidence 44555666666678999886542 689999999986 55999999999872 221 147788889999
Q ss_pred cCceEEE
Q psy4520 166 SHCHVTL 172 (291)
Q Consensus 166 ~~VpVil 172 (291)
+.+||+.
T Consensus 134 ~~~~ih~ 140 (309)
T PF00016_consen 134 NGLPIHA 140 (309)
T ss_dssp HTSEEEE
T ss_pred cceeeee
Confidence 9977654
No 83
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=81.30 E-value=10 Score=35.01 Aligned_cols=59 Identities=7% Similarity=-0.105 Sum_probs=41.9
Q ss_pred CCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 97 TLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 97 ~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
.-|.|.--.+...+.+++.++++.+ ...|.++||.|=+.+-.. .=+.+++.+++||++.
T Consensus 150 ~~~~~a~asPy~~~~~~l~~Aa~~L-~~~gadlIvLDCmGYt~~-----------------~r~~~~~~~g~PVlLs 208 (221)
T PF07302_consen 150 NPVVVAAASPYEGDEEELAAAAREL-AEQGADLIVLDCMGYTQE-----------------MRDIVQRALGKPVLLS 208 (221)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHH-HhcCCCEEEEECCCCCHH-----------------HHHHHHHHhCCCEEeH
Confidence 3456666666545789999999986 678999999998865211 1123567799999874
No 84
>cd03593 CLECT_NK_receptors_like C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs). CLECT_NK_receptors_like: C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs), including proteins similar to oxidized low density lipoprotein (OxLDL) receptor (LOX-1), CD94, CD69, NKG2-A and -D, osteoclast inhibitory lectin (OCIL), dendritic cell-associated C-type lectin-1 (dectin-1), human myeloid inhibitory C-type lectin-like receptor (MICL), mast cell-associated functional antigen (MAFA), killer cell lectin-like receptors: subfamily F, member 1 (KLRF1) and subfamily B, member 1 (KLRB1), and lys49 receptors. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. NKRs are variously associated with activation or inhibition of natural killer (NK) cells. Activating NKRs stimulate cytolysis by NK cells of virally infected or transformed cells; inhibitory NKRs block cytolysis up
Probab=79.83 E-value=1.7 Score=34.01 Aligned_cols=45 Identities=24% Similarity=0.450 Sum_probs=38.1
Q ss_pred ceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccce
Q psy4520 237 TATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282 (291)
Q Consensus 237 ~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
...|.+.+++|+... .+|.++.++|...||.++.-.|++-+-||.
T Consensus 5 w~~~~~~Cy~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~ 49 (116)
T cd03593 5 WICYGNKCYYFSMEK-KTWNESKEACSSKNSSLLKIDDEEELEFLQ 49 (116)
T ss_pred CEEeCCEEEEEEcCC-CCHHHHHHHHHhCCCcEEEECCHHHHHHHH
Confidence 345778898887764 899999999999999999999988877765
No 85
>KOG1564|consensus
Probab=79.79 E-value=6.1 Score=38.25 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=49.1
Q ss_pred eEEEcCCCCCCHHHHHHHHHH----HHHhCCCcEEEEecccccc--CC--CCC-CccHHHHHHHHHHHHHHHHHhcCceE
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEH----AMYVYDTGHVIIDNVQFML--GL--SDS-ALDRFYMQDTIIQEFRAFASRSHCHV 170 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~----~~~~~gv~lviIDyLqlm~--~~--~~~-~~~r~~~~~~i~r~LK~~Ake~~VpV 170 (291)
+|+...+. ++.+.+.+-+ +-.++++++||||..--.- .. ..+ -..|-.....+..+|+.+|..++++|
T Consensus 180 IFv~~~~d---~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~fR~E~d~~~Sdl~~r~~~l~rla~~Lr~LA~~~~~aV 256 (351)
T KOG1564|consen 180 IFVENVHD---VDHLLHIVNRQLPILLNRKKIKLVIIDSVAALFRSEFDYNPSDLKKRARHLFRLAGKLRQLASKFDLAV 256 (351)
T ss_pred EEEEeccc---hhhHHHHHhhhccceeccCcceEEEEehhhHHHHHHhccChhhhhhHHHHHHHHHHHHHHHHHhcCccE
Confidence 67766544 4444444433 4467889999999873221 11 111 12345667889999999999999999
Q ss_pred EEEec
Q psy4520 171 TLVIH 175 (291)
Q Consensus 171 ilvsh 175 (291)
+++-|
T Consensus 257 V~~NQ 261 (351)
T KOG1564|consen 257 VCANQ 261 (351)
T ss_pred EEeec
Confidence 99988
No 86
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.59 E-value=15 Score=32.27 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=45.2
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .| ......+.+.|+.++++.+..|++++|.... +.+-||.|++
T Consensus 147 ~~~p~llllDEPt--~~-----LD-~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~--------------~~~~~d~i~~ 204 (214)
T cd03297 147 AAQPELLLLDEPF--SA-----LD-RALRLQLLPELKQIKKNLNIPVIFVTHDLSE--------------AEYLADRIVV 204 (214)
T ss_pred hcCCCEEEEcCCc--cc-----CC-HHHHHHHHHHHHHHHHHcCcEEEEEecCHHH--------------HHHhcCEEEE
Confidence 4567999999983 11 12 2445678889999999889999999996542 5567888888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+.+
T Consensus 205 l~~ 207 (214)
T cd03297 205 MED 207 (214)
T ss_pred EEC
Confidence 864
No 87
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=79.44 E-value=22 Score=31.73 Aligned_cols=60 Identities=18% Similarity=0.321 Sum_probs=43.8
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .| ...+..+.+.|+.++++.+..|++++|.... ++. ||.+++
T Consensus 148 ~~~p~llllDEP~--~~-----LD-~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~--------------~~~-~d~i~~ 204 (236)
T TIGR03864 148 LHRPALLLLDEPT--VG-----LD-PASRAAIVAHVRALCRDQGLSVLWATHLVDE--------------IEA-DDRLVV 204 (236)
T ss_pred hcCCCEEEEcCCc--cC-----CC-HHHHHHHHHHHHHHHHhCCCEEEEEecChhh--------------Hhh-CCEEEE
Confidence 3567999999983 21 12 2445678899999998889999999996542 333 899999
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 205 l~~ 207 (236)
T TIGR03864 205 LHR 207 (236)
T ss_pred EeC
Confidence 864
No 88
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=78.99 E-value=3.9 Score=32.83 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhcCceEE-EEeccCCcCCCCcccccccccccc--------ccCccEEEEE
Q psy4520 152 QDTIIQEFRAFASRSHCHVT-LVIHPRKENEQLTVNSVFGSAKAT--------QESDNVLIIQ 205 (291)
Q Consensus 152 ~~~i~r~LK~~Ake~~VpVi-lvshpRk~ek~p~lsDLrgSg~Ie--------QdAD~Vi~L~ 205 (291)
..+-+.+|+.||+-.|+.|+ -+.|+|+. |.-.-.-|||+++ .+||.|+|=+
T Consensus 6 ~~~~l~El~~L~~t~g~~vv~~~~q~~~~---~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~ 65 (95)
T PF13167_consen 6 FEESLEELEELAETAGYEVVGTVVQKRRK---PDPKTYIGSGKVEEIKELIEELDADLVVFDN 65 (95)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecCCC---CCcceeechhHHHHHHHHHhhcCCCEEEECC
Confidence 56679999999999999999 56677653 4555567888776 5677777654
No 89
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=78.91 E-value=15 Score=32.04 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+ .| ...+..+.+.|+.++++.++.|++++|....
T Consensus 138 r~~laral--~~~p~llllDEPt--~~-----LD-~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~-------------- 193 (213)
T cd03301 138 RVALGRAI--VREPKVFLMDEPL--SN-----LD-AKLRVQMRAELKRLQQRLGTTTIYVTHDQVE-------------- 193 (213)
T ss_pred HHHHHHHH--hcCCCEEEEcCCc--cc-----CC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------------
Confidence 33444443 3567899999983 11 12 2445678999999999889999999995432
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++.+
T Consensus 194 ~~~~~d~i~~l~~ 206 (213)
T cd03301 194 AMTMADRIAVMND 206 (213)
T ss_pred HHHhcCeEEEEEC
Confidence 4556788888854
No 90
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=78.15 E-value=16 Score=34.93 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+....+|.+ -.+-+++|.|+-.-.. | ...+..|++.|+.+.++.++.|++++|.-..
T Consensus 161 QRv~iArAL--~~~P~lLilDEPts~L-------D-~~~~~~i~~lL~~l~~~~g~til~iTHdl~~------------- 217 (327)
T PRK11308 161 QRIAIARAL--MLDPDVVVADEPVSAL-------D-VSVQAQVLNLMMDLQQELGLSYVFISHDLSV------------- 217 (327)
T ss_pred HHHHHHHHH--HcCCCEEEEECCCccC-------C-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-------------
Confidence 334444443 4467899999984222 2 2446789999999999999999999995432
Q ss_pred cccccCccEEEEEccC
Q psy4520 193 KATQESDNVLIIQQKF 208 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R~~ 208 (291)
+..-||.|+++|.-.
T Consensus 218 -~~~~adrv~vm~~G~ 232 (327)
T PRK11308 218 -VEHIADEVMVMYLGR 232 (327)
T ss_pred -HHHhCCEEEEEECCE
Confidence 445688888887643
No 91
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.96 E-value=16 Score=32.16 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=44.7
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|.... +.+-||.++
T Consensus 146 l~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~--------------~~~~~d~i~ 203 (220)
T cd03265 146 LVHRPEVLFLDEPT--IG-----LDP-QTRAHVWEYIEKLKEEFGMTILLTTHYMEE--------------AEQLCDRVA 203 (220)
T ss_pred HhcCCCEEEEcCCc--cC-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------------HHHhCCEEE
Confidence 44577999999983 21 122 335668888899998889999999995442 556688888
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 204 ~l~~ 207 (220)
T cd03265 204 IIDH 207 (220)
T ss_pred EEeC
Confidence 8854
No 92
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.91 E-value=19 Score=31.92 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=45.5
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .| ......+.+.|+.++++.+..|++++|.... +..-||.++
T Consensus 155 l~~~p~lllLDEP~--~~-----LD-~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~--------------~~~~~d~i~ 212 (233)
T cd03258 155 LANNPKVLLCDEAT--SA-----LD-PETTQSILALLRDINRELGLTIVLITHEMEV--------------VKRICDRVA 212 (233)
T ss_pred HhcCCCEEEecCCC--Cc-----CC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------------HHHhCCEEE
Confidence 34677999999983 11 12 2345678899999999989999999995432 456789998
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 213 ~l~~ 216 (233)
T cd03258 213 VMEK 216 (233)
T ss_pred EEEC
Confidence 8864
No 93
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=77.77 E-value=18 Score=33.07 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=45.7
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .| ......+.+.|+.++++.+..|++++|.... +...||.|+
T Consensus 162 l~~~p~lllLDEPt--~~-----LD-~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~--------------i~~~~d~i~ 219 (265)
T PRK10575 162 VAQDSRCLLLDEPT--SA-----LD-IAHQVDVLALVHRLSQERGLTVIAVLHDINM--------------AARYCDYLV 219 (265)
T ss_pred HhcCCCEEEEcCCc--cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------------HHHhCCEEE
Confidence 34578999999983 21 12 2345678899999998889999999996543 556788888
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++.+
T Consensus 220 ~l~~ 223 (265)
T PRK10575 220 ALRG 223 (265)
T ss_pred EEEC
Confidence 8864
No 94
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=77.57 E-value=23 Score=31.62 Aligned_cols=69 Identities=10% Similarity=0.163 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -.+-+++++|+-. .+ .|. .....+.+.|+.++++.++.|++++|....
T Consensus 153 rv~la~al--~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~~~~~tiii~tH~~~~-------------- 208 (243)
T TIGR02315 153 RVAIARAL--AQQPDLILADEPI--AS-----LDP-KTSKQVMDYLKRINKEDGITVIINLHQVDL-------------- 208 (243)
T ss_pred HHHHHHHH--hcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------------
Confidence 34444443 3567899999983 11 122 345668888888988889999999996442
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++.+
T Consensus 209 ~~~~~d~v~~l~~ 221 (243)
T TIGR02315 209 AKKYADRIVGLKA 221 (243)
T ss_pred HHHhcCeEEEEEC
Confidence 4566899988864
No 95
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=77.54 E-value=28 Score=35.12 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=38.0
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNV 135 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyL 135 (291)
+.+.++.++=.+..+|..+-++ ..++++++++.+ .+.|...+.||++
T Consensus 216 ~ai~~a~~eTG~~~~ya~NiT~--~~~em~~ra~~a-~~~G~~~vmv~~~ 262 (424)
T cd08208 216 KARRRAEAETGVPKIYLANITD--EVDRLMELHDVA-VRNGANALLINAM 262 (424)
T ss_pred HHHHHHHHhhCCcceEEEEccC--CHHHHHHHHHHH-HHhCCCEEEEeee
Confidence 4555566666677899988776 589999999986 6699999999999
No 96
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=77.38 E-value=12 Score=33.93 Aligned_cols=73 Identities=10% Similarity=0.049 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHh--CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccc
Q psy4520 113 LVMEAVEHAMYV--YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFG 190 (291)
Q Consensus 113 ~i~~~~r~~~~~--~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrg 190 (291)
..+..++.+... ...+++++|+-.- + .| ......+.+.|+.++++ +..|++++|...
T Consensus 162 ~rl~la~al~~~~~~~p~~lllDEPt~--~-----LD-~~~~~~l~~~i~~~~~~-g~~vi~isH~~~------------ 220 (247)
T cd03275 162 TMAALALLFAIHSYQPAPFFVLDEVDA--A-----LD-NTNVGKVASYIREQAGP-NFQFIVISLKEE------------ 220 (247)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecccc--c-----CC-HHHHHHHHHHHHHhccC-CcEEEEEECCHH------------
Confidence 344444444432 2368999999832 1 12 13345677788888766 899999999633
Q ss_pred cccccccCccEEEEEccCc
Q psy4520 191 SAKATQESDNVLIIQQKFN 209 (291)
Q Consensus 191 Sg~IeQdAD~Vi~L~R~~~ 209 (291)
+-..||.+++++|+..
T Consensus 221 ---~~~~~d~i~~~~~~~~ 236 (247)
T cd03275 221 ---FFSKADALVGVYRDQE 236 (247)
T ss_pred ---HHhhCCeEEEEEecCC
Confidence 2235899999999865
No 97
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.35 E-value=24 Score=31.38 Aligned_cols=68 Identities=10% Similarity=0.158 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccc
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKA 194 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~I 194 (291)
+..++.+ -.+-+++++|+-. .+ .| ......+.+.|+.++++.+..|++++|.... +
T Consensus 153 v~la~al--~~~p~llllDEPt--~~-----LD-~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~--------------~ 208 (241)
T cd03256 153 VAIARAL--MQQPKLILADEPV--AS-----LD-PASSRQVMDLLKRINREEGITVIVSLHQVDL--------------A 208 (241)
T ss_pred HHHHHHH--hcCCCEEEEeCcc--cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------------H
Confidence 3344443 3567999999983 11 12 2345678899999998889999999995442 4
Q ss_pred cccCccEEEEEc
Q psy4520 195 TQESDNVLIIQQ 206 (291)
Q Consensus 195 eQdAD~Vi~L~R 206 (291)
.+-||.|+++..
T Consensus 209 ~~~~d~v~~l~~ 220 (241)
T cd03256 209 REYADRIVGLKD 220 (241)
T ss_pred HHhCCEEEEEEC
Confidence 556899998864
No 98
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=77.29 E-value=31 Score=34.65 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=37.7
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNV 135 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyL 135 (291)
+.+.++.++=.+..+|..+-++. .++++++++++ .+.|...+.||++
T Consensus 190 ~a~~~a~~eTG~~~~y~~NiT~~--~~em~~ra~~a-~~~G~~~~m~~~~ 236 (407)
T PRK09549 190 EVLQEVYETTGHKTLYAVNLTGR--TFELKEKAKRA-AEAGADALLFNVF 236 (407)
T ss_pred HHHHHHHHhhCCcceEEEecCCC--HHHHHHHHHHH-HHcCCCeEEEecc
Confidence 44555666666778999998774 58999999986 5699999999998
No 99
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=77.29 E-value=5.5 Score=36.19 Aligned_cols=116 Identities=10% Similarity=0.092 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccchhhhhhHHHHHHhhcCCCeE
Q psy4520 22 VQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLLDNLDKFDEYSDWFKTLPMY 101 (291)
Q Consensus 22 M~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~pl~ 101 (291)
|+.+++..++-.....+|.......--. .+|. ... +.+....+.+++..||
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmG--S~~T-------------~~~--------------~~m~~vl~~l~~~gl~ 121 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMG--SRFT-------------SDR--------------EAMRWVLEVLKERGLF 121 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE---CCHH-------------C-H--------------HHHHHHHHHHHHTT-E
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCC--cccc-------------CCH--------------HHHHHHHHHHHHcCCE
Confidence 8999999999999999887644211000 0000 001 2222234555555677
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 102 FLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 102 i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
+.|+.+. . ..++....+++|+.....|=. + +. ......+..-.+++...|++.|-.| ++.||+..
T Consensus 122 FvDS~T~--~---~s~a~~~A~~~gvp~~~rdvf--L-D~----~~~~~~I~~ql~~~~~~A~~~G~aI-~Igh~~p~ 186 (213)
T PF04748_consen 122 FVDSRTT--P---RSVAPQVAKELGVPAARRDVF--L-DN----DQDEAAIRRQLDQAARIARKQGSAI-AIGHPRPE 186 (213)
T ss_dssp EEE-S----T---T-SHHHHHHHCT--EEE-SEE--T-TS----T-SHHHHHHHHHHHHHHHHCCSEEE-EEEE-SCC
T ss_pred EEeCCCC--c---ccHHHHHHHHcCCCEEeecee--c-CC----CCCHHHHHHHHHHHHHhhhhcCcEE-EEEcCCHH
Confidence 7664321 1 123334456777765554432 1 11 1234667788899999999976554 57898875
No 100
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=77.15 E-value=23 Score=31.36 Aligned_cols=68 Identities=16% Similarity=0.085 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -.+-+++++|+-. .+ .| ......+.+.|+.++++.+..|++++|....
T Consensus 154 rl~la~al--~~~p~llllDEPt--~~-----LD-~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-------------- 209 (228)
T PRK10584 154 RVALARAF--NGRPDVLFADEPT--GN-----LD-RQTGDKIADLLFSLNREHGTTLILVTHDLQL-------------- 209 (228)
T ss_pred HHHHHHHH--hcCCCEEEEeCCC--CC-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------------
Confidence 33344443 4578999999983 11 12 2445678889999999989999999995332
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
++ .||.++++..
T Consensus 210 ~~-~~d~i~~l~~ 221 (228)
T PRK10584 210 AA-RCDRRLRLVN 221 (228)
T ss_pred HH-hCCEEEEEEC
Confidence 33 3888888864
No 101
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=77.02 E-value=34 Score=34.16 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=38.0
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNV 135 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyL 135 (291)
+.+.++.++=.+..+|..+-++. .++++++++++ .+.|...+.||++
T Consensus 180 ~a~~~a~~eTG~~~~ya~NiT~~--~~em~~ra~~~-~~~G~~~~mv~~~ 226 (391)
T cd08209 180 PVLQEVYEQTGRRTLYAVNLTGP--VFTLKEKARRL-VEAGANALLFNVF 226 (391)
T ss_pred HHHHHHHHhhCCcceEEEEcCCC--HHHHHHHHHHH-HHhCCCEEEEecc
Confidence 44555666666778999998774 79999999986 5699999999998
No 102
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.81 E-value=21 Score=31.94 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=44.2
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
--.+.+++++|+-. .+ .|. ..+..+.+.|+.++.+.++.|++++|.... +...||.|+
T Consensus 144 l~~~p~llllDEPt--~g-----LD~-~~~~~l~~~l~~~~~~~~~tili~tH~~~~--------------~~~~~d~i~ 201 (235)
T cd03299 144 LVVNPKILLLDEPF--SA-----LDV-RTKEKLREELKKIRKEFGVTVLHVTHDFEE--------------AWALADKVA 201 (235)
T ss_pred HHcCCCEEEECCCc--cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------------HHHhCCEEE
Confidence 34567999999983 22 122 445678889999988889999999994332 345678888
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
.+..
T Consensus 202 ~l~~ 205 (235)
T cd03299 202 IMLN 205 (235)
T ss_pred EEEC
Confidence 8864
No 103
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=75.81 E-value=37 Score=34.05 Aligned_cols=47 Identities=6% Similarity=0.018 Sum_probs=37.6
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNV 135 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyL 135 (291)
+.+.++.++-.+..+|..+-++ +.++++++++++ .+.|...+.||++
T Consensus 199 ~a~~~a~~eTG~~~~y~~NiT~--~~~em~~ra~~~-~~~G~~~~mv~~~ 245 (406)
T cd08207 199 RVINDHAQRTGRKVMYAFNITD--DIDEMRRNHDLV-VEAGGTCVMVSLN 245 (406)
T ss_pred HHHHHHHHhhCCcceEEEecCC--CHHHHHHHHHHH-HHhCCCeEEEecc
Confidence 3444566666677899999877 489999999986 5799999999998
No 104
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.78 E-value=24 Score=30.90 Aligned_cols=69 Identities=13% Similarity=0.257 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|....
T Consensus 138 rl~la~al--~~~p~~lllDEPt--~~-----LD~-~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-------------- 193 (213)
T cd03259 138 RVALARAL--AREPSLLLLDEPL--SA-----LDA-KLREELREELKELQRELGITTIYVTHDQEE-------------- 193 (213)
T ss_pred HHHHHHHH--hcCCCEEEEcCCc--cc-----CCH-HHHHHHHHHHHHHHHHcCCEEEEEecCHHH--------------
Confidence 34444443 3567899999983 11 122 445678899999998889999999996432
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 194 ~~~~~d~v~~l~~ 206 (213)
T cd03259 194 ALALADRIAVMNE 206 (213)
T ss_pred HHHhcCEEEEEEC
Confidence 4567888888864
No 105
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=75.68 E-value=23 Score=32.13 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+ -| ......+.+.|+.++++.+..|++++|....
T Consensus 159 rl~laral--~~~p~llllDEPt--~~-----LD-~~~~~~l~~~l~~~~~~~~~tii~isH~~~~-------------- 214 (258)
T PRK11701 159 RLQIARNL--VTHPRLVFMDEPT--GG-----LD-VSVQARLLDLLRGLVRELGLAVVIVTHDLAV-------------- 214 (258)
T ss_pred HHHHHHHH--hcCCCEEEEcCCc--cc-----CC-HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH--------------
Confidence 33444443 4567999999983 11 12 2445678888999999889999999997653
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 215 ~~~~~d~i~~l~~ 227 (258)
T PRK11701 215 ARLLAHRLLVMKQ 227 (258)
T ss_pred HHHhcCEEEEEEC
Confidence 5567899988864
No 106
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.59 E-value=16 Score=31.98 Aligned_cols=69 Identities=14% Similarity=0.235 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -.+-+++++|+-. .+ .| ......+.+.|++++++.++.|++++|....
T Consensus 136 rv~ia~al--~~~p~llllDEP~--~~-----LD-~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-------------- 191 (211)
T cd03298 136 RVALARVL--VRDKPVLLLDEPF--AA-----LD-PALRAEMLDLVLDLHAETKMTVLMVTHQPED-------------- 191 (211)
T ss_pred HHHHHHHH--hcCCCEEEEcCCc--cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------------
Confidence 34444443 3567999999983 11 12 1345668899999999889999999995542
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 192 ~~~~~d~i~~l~~ 204 (211)
T cd03298 192 AKRLAQRVVFLDN 204 (211)
T ss_pred HHhhhCEEEEEEC
Confidence 4566888888864
No 107
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=75.53 E-value=9.3 Score=32.43 Aligned_cols=67 Identities=16% Similarity=0.320 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN 180 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e 180 (291)
+.+..+.+.+-...++.+=++|+||-+..+.- .+.+..+-.++..||.+|-.+|..+++++-|...+
T Consensus 58 t~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l-----~NgF~~v~KFL~~LkD~~~~~~~~lIl~~~~~al~ 124 (136)
T PF05763_consen 58 TNLHKLLDTIVRFLKENGNGVVIIDGLEYLIL-----ENGFESVLKFLASLKDYALLNNGTLILVVDPEALD 124 (136)
T ss_pred hhhHHHHHHHHHHHHhCCCcEEEEecHHHHHH-----HcCHHHHHHHHHHhHHHeeccCCEEEEEEChhhcC
Confidence 35566666665555556667999998866543 24478889999999999999999999998766554
No 108
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=75.04 E-value=23 Score=34.03 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....++.+ -.+-+++|.|+-.-. .| ...+.++.+.|+.+.++.+..|++++|.-..
T Consensus 169 Rv~iArAL--~~~P~llilDEPts~-------LD-~~~~~~i~~lL~~l~~~~~~til~iTHdl~~-------------- 224 (331)
T PRK15079 169 RIGIARAL--ILEPKLIICDEPVSA-------LD-VSIQAQVVNLLQQLQREMGLSLIFIAHDLAV-------------- 224 (331)
T ss_pred HHHHHHHH--hcCCCEEEEeCCCcc-------CC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------------
Confidence 33444443 456799999998421 12 2446779999999999999999999995432
Q ss_pred ccccCccEEEEEcc
Q psy4520 194 ATQESDNVLIIQQK 207 (291)
Q Consensus 194 IeQdAD~Vi~L~R~ 207 (291)
+..-||.|++++.-
T Consensus 225 ~~~~~dri~vl~~G 238 (331)
T PRK15079 225 VKHISDRVLVMYLG 238 (331)
T ss_pred HHHhCCEEEEEECC
Confidence 34557888888753
No 109
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=74.95 E-value=28 Score=32.50 Aligned_cols=69 Identities=14% Similarity=0.295 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -..-+++|+|+-. .+ .|. ..+..+.+.|+.++++.+..|++++|.-..
T Consensus 153 rv~lAraL--~~~P~llllDEPt--~~-----LD~-~~~~~l~~~L~~l~~~~g~tviiitHd~~~-------------- 208 (290)
T PRK13634 153 RVAIAGVL--AMEPEVLVLDEPT--AG-----LDP-KGRKEMMEMFYKLHKEKGLTTVLVTHSMED-------------- 208 (290)
T ss_pred HHHHHHHH--HcCCCEEEEECCc--cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------------
Confidence 34444444 3567999999984 21 122 446778999999999999999999995332
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|++++.
T Consensus 209 ~~~~~drv~~l~~ 221 (290)
T PRK13634 209 AARYADQIVVMHK 221 (290)
T ss_pred HHHhCCEEEEEEC
Confidence 5577999999974
No 110
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=74.87 E-value=21 Score=36.53 Aligned_cols=69 Identities=12% Similarity=-0.036 Sum_probs=50.0
Q ss_pred HHHhhcC---CCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy4520 91 YSDWFKT---LPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSH 167 (291)
Q Consensus 91 a~~~~~~---~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~ 167 (291)
..+++.. +|.=|.+.+-..+.+.+.++++.+..+.+|+.||+-..++- +. ...-..++.++
T Consensus 28 i~~~l~~~~~~~~~v~~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs--------~a--------~~~i~~~~~l~ 91 (484)
T cd03557 28 IVDGLNASGKLPVKIVFKPVLTTPDEILAVCREANADDNCAGVITWMHTFS--------PA--------KMWIAGLTALQ 91 (484)
T ss_pred HHHHhcccCCCCeEEEEccccCCHHHHHHHHHHccccCCccEEEEccCCCc--------hH--------HHHHHHHHHcC
Confidence 4556655 88888888877899999999887655688999998666541 11 11222378899
Q ss_pred ceEEEEec
Q psy4520 168 CHVTLVIH 175 (291)
Q Consensus 168 VpVilvsh 175 (291)
+||++++-
T Consensus 92 ~PvL~~~~ 99 (484)
T cd03557 92 KPLLHLHT 99 (484)
T ss_pred CCEEEEcc
Confidence 99998875
No 111
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=74.58 E-value=9.2 Score=35.48 Aligned_cols=51 Identities=24% Similarity=0.258 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 117 AVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 117 ~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+.=.|+.-.+.+-|++|+= + . +.|-... -++++-||++|.|+|-.|++|-|
T Consensus 144 AfIAMVlaQdTdyvlLDEP-L-N-----NLDmkHs-v~iMk~Lrrla~el~KtiviVlH 194 (252)
T COG4604 144 AFIAMVLAQDTDYVLLDEP-L-N-----NLDMKHS-VQIMKILRRLADELGKTIVVVLH 194 (252)
T ss_pred hhhheeeeccCcEEEecCc-c-c-----ccchHHH-HHHHHHHHHHHHHhCCeEEEEEe
Confidence 3334566678888888865 1 1 1232222 35899999999999999999988
No 112
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=74.57 E-value=28 Score=30.48 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=42.3
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ -| ......+.+.|+.++++ +..|++++|.... +.+-||.|+
T Consensus 153 l~~~p~llllDEPt--~~-----LD-~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~--------------~~~~~d~i~ 209 (216)
T TIGR00960 153 IVHKPPLLLADEPT--GN-----LD-PELSRDIMRLFEEFNRR-GTTVLVATHDINL--------------VETYRHRTL 209 (216)
T ss_pred HhcCCCEEEEeCCC--Cc-----CC-HHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------------HHHhCCEEE
Confidence 34567999999983 11 12 23456678888888765 8999999996442 456688888
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 210 ~l~~ 213 (216)
T TIGR00960 210 TLSR 213 (216)
T ss_pred EEeC
Confidence 8854
No 113
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=73.58 E-value=25 Score=31.62 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=45.2
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .| ......+.+.|+.++++.+..|++++|.... +..-||.++
T Consensus 168 l~~~p~llllDEPt--~~-----LD-~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~--------------~~~~~d~i~ 225 (236)
T cd03267 168 LLHEPEILFLDEPT--IG-----LD-VVAQENIRNFLKEYNRERGTTVLLTSHYMKD--------------IEALARRVL 225 (236)
T ss_pred HhcCCCEEEEcCCC--CC-----CC-HHHHHHHHHHHHHHHhcCCCEEEEEecCHHH--------------HHHhCCEEE
Confidence 34567999999983 11 12 2445678999999999889999999996553 445678888
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
+|..
T Consensus 226 ~l~~ 229 (236)
T cd03267 226 VIDK 229 (236)
T ss_pred EEeC
Confidence 8853
No 114
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=73.55 E-value=29 Score=30.39 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=42.9
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .|. .....+.+.|+.++++.++.|++++|.... ++ -||.|++
T Consensus 156 ~~~p~lllLDEP~--~~-----LD~-~~~~~l~~~l~~~~~~~~~tii~~sH~~~~--------------~~-~~d~v~~ 212 (218)
T cd03255 156 ANDPKIILADEPT--GN-----LDS-ETGKEVMELLRELNKEAGTTIVVVTHDPEL--------------AE-YADRIIE 212 (218)
T ss_pred ccCCCEEEEcCCc--cc-----CCH-HHHHHHHHHHHHHHHhcCCeEEEEECCHHH--------------Hh-hhcEEEE
Confidence 4567999999983 11 121 345678899999988889999999996331 33 5788888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 213 l~~ 215 (218)
T cd03255 213 LRD 215 (218)
T ss_pred eeC
Confidence 853
No 115
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=73.20 E-value=28 Score=30.38 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=41.7
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .|. ..+..+.+.|+.++++ +..|++++|.... +.+-||.++
T Consensus 151 l~~~p~llllDEPt--~~-----LD~-~~~~~~~~~l~~~~~~-~~tiiivtH~~~~--------------~~~~~d~i~ 207 (214)
T cd03292 151 IVNSPTILIADEPT--GN-----LDP-DTTWEIMNLLKKINKA-GTTVVVATHAKEL--------------VDTTRHRVI 207 (214)
T ss_pred HHcCCCEEEEeCCC--Cc-----CCH-HHHHHHHHHHHHHHHc-CCEEEEEeCCHHH--------------HHHhCCEEE
Confidence 34577999999983 11 121 3346678888888765 8899999995432 445678888
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++.+
T Consensus 208 ~l~~ 211 (214)
T cd03292 208 ALER 211 (214)
T ss_pred EEeC
Confidence 8753
No 116
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=73.13 E-value=31 Score=30.07 Aligned_cols=60 Identities=15% Similarity=0.276 Sum_probs=42.7
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .|. ..+..+.+.|+.+++ .+..|++++|... .+.+.||.|++
T Consensus 151 ~~~p~llllDEP~--~~-----LD~-~~~~~l~~~l~~~~~-~~~tvi~~sh~~~--------------~~~~~~d~i~~ 207 (213)
T cd03262 151 AMNPKVMLFDEPT--SA-----LDP-ELVGEVLDVMKDLAE-EGMTMVVVTHEMG--------------FAREVADRVIF 207 (213)
T ss_pred hcCCCEEEEeCCc--cC-----CCH-HHHHHHHHHHHHHHH-cCCEEEEEeCCHH--------------HHHHhCCEEEE
Confidence 4567999999983 11 122 445678888888887 4889999999543 25677899888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+.+
T Consensus 208 l~~ 210 (213)
T cd03262 208 MDD 210 (213)
T ss_pred EeC
Confidence 864
No 117
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=72.92 E-value=53 Score=32.48 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=38.0
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNV 135 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyL 135 (291)
+.+.++.++-.+..+|..+-++. .++++++++++ .+.|...+.||++
T Consensus 183 ~a~~~a~~eTG~~~~y~~NiT~~--~~em~~ra~~~-~~~G~~~~mv~~~ 229 (366)
T cd08148 183 AALDRVQEETGEKKLYAVNVTAG--TFEIIERAERA-LELGANMLMVDVL 229 (366)
T ss_pred HHHHHHHHhhCCcceEEEEccCC--HHHHHHHHHHH-HHhCCCEEEEecc
Confidence 45555667767778999998774 59999999986 6799999999998
No 118
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=72.91 E-value=21 Score=31.76 Aligned_cols=61 Identities=13% Similarity=0.238 Sum_probs=45.7
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .| ...+..+.+.|+.++++.+..|++++|.... +.+-||.|++
T Consensus 145 ~~~p~lllLDEP~--~g-----LD-~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~--------------~~~~~d~i~~ 202 (232)
T PRK10771 145 VREQPILLLDEPF--SA-----LD-PALRQEMLTLVSQVCQERQLTLLMVSHSLED--------------AARIAPRSLV 202 (232)
T ss_pred hcCCCEEEEeCCc--cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEECCHHH--------------HHHhCCEEEE
Confidence 3567999999983 21 12 1345678889999999889999999996653 5677899988
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 203 l~~ 205 (232)
T PRK10771 203 VAD 205 (232)
T ss_pred EEC
Confidence 864
No 119
>cd03590 CLECT_DC-SIGN_like C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR). CLECT_DC-SIGN_like: C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR). This group also contains proteins similar to hepatic asialoglycoprotein receptor (ASGP-R) and langerin in human. These proteins are type II membrane proteins with a CTLD ectodomain. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DC-SIGN is thought to mediate the initial contact between dendritic cells and resting T cells, and may also mediate the rolling of DCs on epithelium. DC-SIGN and DC-SIGNR bind to oligosaccharides present on human tissues, as well as, on path
Probab=72.82 E-value=3.5 Score=32.55 Aligned_cols=43 Identities=28% Similarity=0.559 Sum_probs=35.2
Q ss_pred eeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 238 ATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 238 l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
..|.+.++.|.+. ..++.++.++|...||.++.-.+++-+-||
T Consensus 6 ~~~~~~Cy~~~~~-~~tw~~A~~~C~~~g~~La~i~s~~e~~~l 48 (126)
T cd03590 6 KSFQSSCYFFSTE-KKSWEESRQFCEDMGAHLVIINSQEEQEFI 48 (126)
T ss_pred eEeCCEEEEEeCC-CcCHHHHHHHHHhCCCEEEeeCCHHHHHHH
Confidence 3567889888875 899999999999999999987777655443
No 120
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=72.71 E-value=19 Score=32.22 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=45.4
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++|+|+-. .+ -| ......+.+.|+.++++.++.|++++|... .+.+-||.|++
T Consensus 130 ~~~p~lllLDEPt--~g-----LD-~~~~~~l~~~l~~~~~~~~~tii~~sH~~~--------------~~~~~~d~v~~ 187 (230)
T TIGR01184 130 SIRPKVLLLDEPF--GA-----LD-ALTRGNLQEELMQIWEEHRVTVLMVTHDVD--------------EALLLSDRVVM 187 (230)
T ss_pred HcCCCEEEEcCCC--cC-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------HHHHhcCEEEE
Confidence 4567999999983 11 12 134567889999999999999999999543 25677899999
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+.+
T Consensus 188 l~~ 190 (230)
T TIGR01184 188 LTN 190 (230)
T ss_pred EeC
Confidence 964
No 121
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=72.17 E-value=23 Score=30.92 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+ .| ......+.+.|+.++++ ++.|++++|....
T Consensus 142 rv~laral--~~~p~llllDEPt--~~-----LD-~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~-------------- 196 (211)
T cd03225 142 RVAIAGVL--AMDPDILLLDEPT--AG-----LD-PAGRRELLELLKKLKAE-GKTIIIVTHDLDL-------------- 196 (211)
T ss_pred HHHHHHHH--hcCCCEEEEcCCc--cc-----CC-HHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH--------------
Confidence 34444443 3467899999983 11 12 13346688888888887 9999999995442
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+++-||.|+++..
T Consensus 197 ~~~~~d~i~~l~~ 209 (211)
T cd03225 197 LLELADRVIVLED 209 (211)
T ss_pred HHHhCCEEEEEeC
Confidence 4556888888853
No 122
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=71.98 E-value=19 Score=32.85 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHh----CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccc
Q psy4520 112 KLVMEAVEHAMYV----YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNS 187 (291)
Q Consensus 112 ~~i~~~~r~~~~~----~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsD 187 (291)
...+..++.+... .+-+++++|+-.- + .| ......+.+.|+.++++.+..|++++|....
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~--~-----LD-~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-------- 203 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTS--A-----LD-LAHQHHVLRLARQLAHERGLAVIVVLHDLNL-------- 203 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcc--c-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEECCHHH--------
Confidence 3445555555431 4679999999831 1 12 2345668889999987789999999996543
Q ss_pred ccccccccccCccEEEEEc
Q psy4520 188 VFGSAKATQESDNVLIIQQ 206 (291)
Q Consensus 188 LrgSg~IeQdAD~Vi~L~R 206 (291)
+..-||.|+++.+
T Consensus 204 ------~~~~~d~i~~l~~ 216 (258)
T PRK13548 204 ------AARYADRIVLLHQ 216 (258)
T ss_pred ------HHHhcCEEEEEEC
Confidence 4567899999875
No 123
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=71.79 E-value=31 Score=31.50 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=45.0
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|.... +.+-||.|++
T Consensus 144 ~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~L~~~~~~~g~tviivsH~~~~--------------~~~~~d~i~~ 201 (255)
T PRK11248 144 AANPQLLLLDEPF--GA-----LDA-FTREQMQTLLLKLWQETGKQVLLITHDIEE--------------AVFMATELVL 201 (255)
T ss_pred hcCCCEEEEeCCC--cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------------HHHhCCEEEE
Confidence 4567999999983 11 122 345668888888888789999999996543 5677899999
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
|..
T Consensus 202 l~~ 204 (255)
T PRK11248 202 LSP 204 (255)
T ss_pred EeC
Confidence 963
No 124
>PTZ00445 p36-lilke protein; Provisional
Probab=71.79 E-value=12 Score=34.60 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEecc-ccccCC--C--CCCccHHHHHHHHHHHHHHHH---HhcCceEEEEeccCCcC
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNV-QFMLGL--S--DSALDRFYMQDTIIQEFRAFA---SRSHCHVTLVIHPRKEN 180 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyL-qlm~~~--~--~~~~~r~~~~~~i~r~LK~~A---ke~~VpVilvshpRk~e 180 (291)
.+..+..+..-..-+++||++|++|.= +++..+ + ....+...-+...+..+|.+. ++.|++|++|.++.++.
T Consensus 25 ~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 25 LNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 467788787777778999999999975 333312 1 111022223333444455544 46799999999987754
No 125
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=71.68 E-value=31 Score=33.15 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.++++.++.|++++|....
T Consensus 148 Rv~lAraL--~~~p~iLlLDEPt--s~-----LD~-~~~~~l~~~L~~l~~~~g~tiilvtH~~~~-------------- 203 (343)
T PRK11153 148 RVAIARAL--ASNPKVLLCDEAT--SA-----LDP-ATTRSILELLKDINRELGLTIVLITHEMDV-------------- 203 (343)
T ss_pred HHHHHHHH--HcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------------
Confidence 33444443 4567999999983 11 122 335678999999999999999999995432
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 204 i~~~~d~v~~l~~ 216 (343)
T PRK11153 204 VKRICDRVAVIDA 216 (343)
T ss_pred HHHhCCEEEEEEC
Confidence 4456777777754
No 126
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=71.62 E-value=37 Score=29.85 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -.+-+++++|+-. .+ .| ......+.+.|+.++++.+..|++++|....
T Consensus 139 rl~la~al--~~~p~lllLDEPt--~~-----LD-~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~-------------- 194 (220)
T cd03293 139 RVALARAL--AVDPDVLLLDEPF--SA-----LD-ALTREQLQEELLDIWRETGKTVLLVTHDIDE-------------- 194 (220)
T ss_pred HHHHHHHH--HcCCCEEEECCCC--CC-----CC-HHHHHHHHHHHHHHHHHcCCEEEEEecCHHH--------------
Confidence 33444443 3467899999983 11 12 2345678888999988889999999995442
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.++++.+
T Consensus 195 ~~~~~d~i~~l~~ 207 (220)
T cd03293 195 AVFLADRVVVLSA 207 (220)
T ss_pred HHHhCCEEEEEEC
Confidence 4567888888863
No 127
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=71.56 E-value=28 Score=31.30 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=45.5
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .| ......+.+.|+.++++.++.|++++|.... +.+-||.|+
T Consensus 168 l~~~p~llllDEPt--~~-----LD-~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~--------------~~~~~d~i~ 225 (255)
T PRK11300 168 MVTQPEILMLDEPA--AG-----LN-PKETKELDELIAELRNEHNVTVLLIEHDMKL--------------VMGISDRIY 225 (255)
T ss_pred HhcCCCEEEEcCCc--cC-----CC-HHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH--------------HHHhCCEEE
Confidence 44567999999983 21 12 2345678888999988889999999995442 556789998
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 226 ~l~~ 229 (255)
T PRK11300 226 VVNQ 229 (255)
T ss_pred EEEC
Confidence 8864
No 128
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.38 E-value=31 Score=30.99 Aligned_cols=69 Identities=12% Similarity=0.172 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -.+-+++++|+-. .+ -|. ..+..+.+.|+.++++.+..|++++|....
T Consensus 139 rl~la~al--~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~~~g~tii~~sH~~~~-------------- 194 (241)
T PRK14250 139 RVSIARTL--ANNPEVLLLDEPT--SA-----LDP-TSTEIIEELIVKLKNKMNLTVIWITHNMEQ-------------- 194 (241)
T ss_pred HHHHHHHH--hcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHHhCCCEEEEEeccHHH--------------
Confidence 33444443 3567999999983 11 122 345678889999998889999999996542
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 195 ~~~~~d~i~~l~~ 207 (241)
T PRK14250 195 AKRIGDYTAFLNK 207 (241)
T ss_pred HHHhCCEEEEEeC
Confidence 4567899999964
No 129
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=71.22 E-value=34 Score=31.29 Aligned_cols=68 Identities=12% Similarity=0.204 Sum_probs=48.1
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccc
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKA 194 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~I 194 (291)
...+|.+ -.+-+++++|+-. .+ .|. ..+..+.+.|+.++++.+..|++++|.... +
T Consensus 159 v~laral--~~~p~illLDEPt--~~-----LD~-~~~~~l~~~l~~~~~~~g~tiiivsH~~~~--------------~ 214 (265)
T TIGR02769 159 INIARAL--AVKPKLIVLDEAV--SN-----LDM-VLQAVILELLRKLQQAFGTAYLFITHDLRL--------------V 214 (265)
T ss_pred HHHHHHH--hcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHHhcCcEEEEEeCCHHH--------------H
Confidence 3344443 3567999999983 21 122 445678999999999889999999995432 4
Q ss_pred cccCccEEEEEc
Q psy4520 195 TQESDNVLIIQQ 206 (291)
Q Consensus 195 eQdAD~Vi~L~R 206 (291)
.+-||.+++|++
T Consensus 215 ~~~~d~i~~l~~ 226 (265)
T TIGR02769 215 QSFCQRVAVMDK 226 (265)
T ss_pred HHHhcEEEEEeC
Confidence 567899999975
No 130
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=71.15 E-value=53 Score=32.99 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=37.3
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNV 135 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyL 135 (291)
+.+.++.++=.+..+|..+-++. .++++++++++ .+.|...+.||++
T Consensus 195 ~a~~~a~~eTG~~~~y~~NiT~~--~~em~~ra~~a-~~~G~~~~mv~~~ 241 (407)
T TIGR03332 195 EVLQEVYEQTGHKTLYAVNLTGR--TFDLKDKAKRA-AELGADVLLFNVF 241 (407)
T ss_pred HHHHHHHHHHCCcceEeecCCCC--HHHHHHHHHHH-HHhCCCEEEEecc
Confidence 44455666666778999998774 67899999986 5699999999998
No 131
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=70.97 E-value=47 Score=29.47 Aligned_cols=62 Identities=16% Similarity=0.307 Sum_probs=45.9
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .|. ..+..+.+.|+.++++.+..|++++|.... ++ .||.|++
T Consensus 153 ~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~~~~~tvii~sh~~~~--------------~~-~~d~i~~ 209 (225)
T PRK10247 153 QFMPKVLLLDEIT--SA-----LDE-SNKHNVNEIIHRYVREQNIAVLWVTHDKDE--------------IN-HADKVIT 209 (225)
T ss_pred hcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEECChHH--------------HH-hCCEEEE
Confidence 3567999999983 21 122 345678899999999999999999997542 33 4899999
Q ss_pred EEccC
Q psy4520 204 IQQKF 208 (291)
Q Consensus 204 L~R~~ 208 (291)
+.++.
T Consensus 210 l~~~~ 214 (225)
T PRK10247 210 LQPHA 214 (225)
T ss_pred Eeccc
Confidence 96654
No 132
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=70.53 E-value=26 Score=30.85 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=44.8
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|.... +.+-||.|++
T Consensus 161 ~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~l~~~~~~~~~tii~~sH~~~~--------------~~~~~d~i~~ 218 (228)
T cd03257 161 ALNPKLLIADEPT--SA-----LDV-SVQAQILDLLKKLQEELGLTLLFITHDLGV--------------VAKIADRVAV 218 (228)
T ss_pred hcCCCEEEecCCC--CC-----CCH-HHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------------HHHhcCeEEE
Confidence 3567999999983 11 122 345678899999999889999999995432 5567888888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
|+.
T Consensus 219 l~~ 221 (228)
T cd03257 219 MYA 221 (228)
T ss_pred EeC
Confidence 864
No 133
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=70.26 E-value=22 Score=32.52 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -..-+++++|+-.- + .|- .....+.+.|+.++++.+..|++++|....
T Consensus 123 rv~iaraL--~~~p~llllDEPt~--~-----LD~-~~~~~l~~~l~~~~~~~~~tiiivsHd~~~-------------- 178 (246)
T cd03237 123 RVAIAACL--SKDADIYLLDEPSA--Y-----LDV-EQRLMASKVIRRFAENNEKTAFVVEHDIIM-------------- 178 (246)
T ss_pred HHHHHHHH--hcCCCEEEEeCCcc--c-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------------
Confidence 33444433 45679999999832 1 121 335668889999999999999999996543
Q ss_pred ccccCccEEEEEcc
Q psy4520 194 ATQESDNVLIIQQK 207 (291)
Q Consensus 194 IeQdAD~Vi~L~R~ 207 (291)
+.+-||.|++++..
T Consensus 179 ~~~~~d~i~~l~~~ 192 (246)
T cd03237 179 IDYLADRLIVFEGE 192 (246)
T ss_pred HHHhCCEEEEEcCC
Confidence 55679999999653
No 134
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=70.21 E-value=35 Score=31.00 Aligned_cols=69 Identities=12% Similarity=0.180 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+ .| ...+..+.+.|+.++++.+..|++++|....
T Consensus 160 rv~laral--~~~p~llllDEPt--~~-----LD-~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~-------------- 215 (262)
T PRK09984 160 RVAIARAL--MQQAKVILADEPI--AS-----LD-PESARIVMDTLRDINQNDGITVVVTLHQVDY-------------- 215 (262)
T ss_pred HHHHHHHH--hcCCCEEEecCcc--cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------------
Confidence 33444443 3467899999983 11 12 2446678999999998889999999996542
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++++
T Consensus 216 ~~~~~d~i~~l~~ 228 (262)
T PRK09984 216 ALRYCERIVALRQ 228 (262)
T ss_pred HHHhCCEEEEEEC
Confidence 4466888888865
No 135
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=69.91 E-value=36 Score=30.49 Aligned_cols=61 Identities=16% Similarity=0.309 Sum_probs=43.8
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .| ......+.+.|+.++++.++.|++++|.... +..-||.|+.
T Consensus 146 ~~~p~llllDEP~--~~-----LD-~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~--------------~~~~~d~i~~ 203 (237)
T TIGR00968 146 AVEPQVLLLDEPF--GA-----LD-AKVRKELRSWLRKLHDEVHVTTVFVTHDQEE--------------AMEVADRIVV 203 (237)
T ss_pred hcCCCEEEEcCCc--cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------------HHhhcCEEEE
Confidence 3466999999983 22 12 2445778899999988889999999995442 3455788888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
|..
T Consensus 204 l~~ 206 (237)
T TIGR00968 204 MSN 206 (237)
T ss_pred EEC
Confidence 864
No 136
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=69.75 E-value=32 Score=32.85 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+....++.+ -.+-+++|.|+-.-. .|. ..+.++...|+.++++.+..|++++|.-..
T Consensus 160 QRv~iArAL--~~~P~llilDEPts~-------LD~-~~~~~il~lL~~l~~~~g~til~iTHdl~~------------- 216 (326)
T PRK11022 160 QRVMIAMAI--ACRPKLLIADEPTTA-------LDV-TIQAQIIELLLELQQKENMALVLITHDLAL------------- 216 (326)
T ss_pred HHHHHHHHH--HhCCCEEEEeCCCCC-------CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------------
Confidence 334444444 356799999998421 122 446779999999999999999999995432
Q ss_pred cccccCccEEEEEcc
Q psy4520 193 KATQESDNVLIIQQK 207 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R~ 207 (291)
+.+.||.|+++|.-
T Consensus 217 -~~~~adri~vm~~G 230 (326)
T PRK11022 217 -VAEAAHKIIVMYAG 230 (326)
T ss_pred -HHHhCCEEEEEECC
Confidence 44668888888753
No 137
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=69.60 E-value=49 Score=28.78 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
..+..+|.+ -..-+++++|+-. .+ .|. .....+.+.|+.++++ +..|++++|....
T Consensus 133 qrv~laral--~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~~-~~tii~~sH~~~~------------- 188 (205)
T cd03226 133 QRLAIAAAL--LSGKDLLIFDEPT--SG-----LDY-KNMERVGELIRELAAQ-GKAVIVITHDYEF------------- 188 (205)
T ss_pred HHHHHHHHH--HhCCCEEEEeCCC--cc-----CCH-HHHHHHHHHHHHHHHC-CCEEEEEeCCHHH-------------
Confidence 344444444 3467899999983 11 122 3356678888888765 8999999995432
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+..-||.|++++.
T Consensus 189 -~~~~~d~i~~l~~ 201 (205)
T cd03226 189 -LAKVCDRVLLLAN 201 (205)
T ss_pred -HHHhCCEEEEEEC
Confidence 4566888888863
No 138
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=69.35 E-value=58 Score=30.11 Aligned_cols=61 Identities=15% Similarity=0.288 Sum_probs=44.4
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-.- +. | ......+.+.|+.++++.++.|++++|.-.. ++. ||.|+
T Consensus 159 l~~~p~llllDEPt~--gL-----D-~~~~~~l~~~l~~l~~~~g~tillvtH~~~~--------------~~~-~d~v~ 215 (280)
T PRK13633 159 LAMRPECIIFDEPTA--ML-----D-PSGRREVVNTIKELNKKYGITIILITHYMEE--------------AVE-ADRII 215 (280)
T ss_pred HHcCCCEEEEeCCcc--cC-----C-HHHHHHHHHHHHHHHHhcCCEEEEEecChHH--------------Hhc-CCEEE
Confidence 345679999999832 11 2 2345668889999988889999999995442 344 89999
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 216 ~l~~ 219 (280)
T PRK13633 216 VMDS 219 (280)
T ss_pred EEEC
Confidence 9965
No 139
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.23 E-value=6.5 Score=35.63 Aligned_cols=57 Identities=14% Similarity=0.238 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhcCceEEEEeccCCcC--CCCccccccccccc-------------cccCccEEEEEcc
Q psy4520 151 MQDTIIQEFRAFASRSHCHVTLVIHPRKEN--EQLTVNSVFGSAKA-------------TQESDNVLIIQQK 207 (291)
Q Consensus 151 ~~~~i~r~LK~~Ake~~VpVilvshpRk~e--k~p~lsDLrgSg~I-------------eQdAD~Vi~L~R~ 207 (291)
..-.-+++||..+++.+|||+--+||-.-. .|-.|+|.=|-|-- --..|.|++=+|-
T Consensus 55 ~li~Ni~~Lr~~~~~~giPVvyTaqp~~qs~~draLL~d~WGpgl~~~p~~~~vv~~l~P~~~D~vL~kwrY 126 (218)
T COG1535 55 QLIANIAKLRIWCKQAGIPVVYTAQPGEQSPEDRALLKDFWGPGLTASPEQQKVVDELAPGADDTVLTKWRY 126 (218)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEecCCcCCHHHHHHHHHhcCCCCCCChhhhhhHHhcCCCCCceEEeeeeh
Confidence 344457899999999999999999987443 66677777766532 1245788888883
No 140
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=69.17 E-value=15 Score=28.43 Aligned_cols=52 Identities=12% Similarity=0.062 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
+...++......+--+.+++.|++ . . ........++++.++..++++++||+
T Consensus 41 v~~~~sDl~a~Ga~P~~~~~~l~~--~-~---~~~~~~l~~~~~Gi~~~~~~~g~~iv 92 (96)
T PF00586_consen 41 VAEALSDLAAMGAKPLAILDSLGL--P-N---PESPEELKEIVKGIAEACREFGIPIV 92 (96)
T ss_dssp HHHHHHHHHTTTEEEEEEEEEEEE--S-T---TSBHHHHHHHHHHHHHHHHHHT-EEE
T ss_pred HHHHHHHHHhcCCeeeEEEEEEEc--C-C---CCCHHHHHHHHHHHHHHHHHhCCcEe
Confidence 445555554444455889999975 1 1 12345588999999999999999997
No 141
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=69.15 E-value=12 Score=35.22 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=48.1
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-..-+++++|+-. .+- | ...+.+|.+-|+.+.+| ||.|++|+|.= +...+.+|.|++
T Consensus 155 ~~~p~lllLDEP~--~gv-----D-~~~~~~i~~lL~~l~~e-g~tIl~vtHDL--------------~~v~~~~D~vi~ 211 (254)
T COG1121 155 AQNPDLLLLDEPF--TGV-----D-VAGQKEIYDLLKELRQE-GKTVLMVTHDL--------------GLVMAYFDRVIC 211 (254)
T ss_pred ccCCCEEEecCCc--ccC-----C-HHHHHHHHHHHHHHHHC-CCEEEEEeCCc--------------HHhHhhCCEEEE
Confidence 3557899999982 221 2 24467899999999999 99999999932 235678999999
Q ss_pred EEccCc
Q psy4520 204 IQQKFN 209 (291)
Q Consensus 204 L~R~~~ 209 (291)
|.|.-.
T Consensus 212 Ln~~~~ 217 (254)
T COG1121 212 LNRHLI 217 (254)
T ss_pred EcCeeE
Confidence 998753
No 142
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.06 E-value=39 Score=31.04 Aligned_cols=74 Identities=14% Similarity=0.219 Sum_probs=49.9
Q ss_pred CCHHH--HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccc
Q psy4520 109 QPLKL--VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVN 186 (291)
Q Consensus 109 ~~i~~--i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~ls 186 (291)
.|--+ .+..++.+ -.+-+++|+|+-. .+ .|. .....+.+-|+.++++.+..|++++|....
T Consensus 161 LS~Gq~qrv~lAral--~~~p~illLDEPt--~~-----LD~-~~~~~l~~~l~~~~~~~g~tiii~tH~~~~------- 223 (269)
T cd03294 161 LSGGMQQRVGLARAL--AVDPDILLMDEAF--SA-----LDP-LIRREMQDELLRLQAELQKTIVFITHDLDE------- 223 (269)
T ss_pred CCHHHHHHHHHHHHH--hcCCCEEEEcCCC--cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------
Confidence 44444 33344443 3567999999983 11 122 445678888899988889999999995432
Q ss_pred cccccccccccCccEEEEEc
Q psy4520 187 SVFGSAKATQESDNVLIIQQ 206 (291)
Q Consensus 187 DLrgSg~IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 224 -------~~~~~d~v~~l~~ 236 (269)
T cd03294 224 -------ALRLGDRIAIMKD 236 (269)
T ss_pred -------HHHhcCEEEEEEC
Confidence 4566899999864
No 143
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=68.64 E-value=41 Score=32.66 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+..+.+|.+ -..-+++++|+-. .+ .|. .....+.+.|++++++.++.|++++|....
T Consensus 143 QRvalArAL--~~~P~llLLDEP~--s~-----LD~-~~r~~l~~~L~~l~~~~g~tii~vTHd~~e------------- 199 (353)
T PRK10851 143 QRVALARAL--AVEPQILLLDEPF--GA-----LDA-QVRKELRRWLRQLHEELKFTSVFVTHDQEE------------- 199 (353)
T ss_pred HHHHHHHHH--hcCCCEEEEeCCC--cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------------
Confidence 344555554 3456899999882 21 222 334668899999999999999999995442
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+...||.|+++..
T Consensus 200 -a~~~~Dri~vl~~ 212 (353)
T PRK10851 200 -AMEVADRVVVMSQ 212 (353)
T ss_pred -HHHhCCEEEEEEC
Confidence 3455666666654
No 144
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=68.50 E-value=37 Score=31.15 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=47.6
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccc
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKA 194 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~I 194 (291)
+..++.+ -..-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|.... +
T Consensus 158 v~laral--~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~l~~~~~~~g~tviivsH~~~~--------------~ 213 (267)
T PRK15112 158 LGLARAL--ILRPKVIIADEAL--AS-----LDM-SMRSQLINLMLELQEKQGISYIYVTQHLGM--------------M 213 (267)
T ss_pred HHHHHHH--HhCCCEEEEcCCc--cc-----CCH-HHHHHHHHHHHHHHHHcCcEEEEEeCCHHH--------------H
Confidence 3444443 3567999999983 11 222 345678889999999889999999996432 4
Q ss_pred cccCccEEEEEc
Q psy4520 195 TQESDNVLIIQQ 206 (291)
Q Consensus 195 eQdAD~Vi~L~R 206 (291)
.+-||.|++|..
T Consensus 214 ~~~~d~i~~l~~ 225 (267)
T PRK15112 214 KHISDQVLVMHQ 225 (267)
T ss_pred HHhcCEEEEEEC
Confidence 556888888864
No 145
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=68.47 E-value=26 Score=33.49 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=46.5
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-..-+++|.|+-.- +.|. ..+.++.+.|+.+.++.++.|++++|.-.. +..-||.|+
T Consensus 173 L~~~P~llilDEPts-------~LD~-~~~~~i~~lL~~l~~~~g~tii~itHdl~~--------------v~~~~dri~ 230 (330)
T PRK15093 173 LANQPRLLIADEPTN-------AMEP-TTQAQIFRLLTRLNQNNNTTILLISHDLQM--------------LSQWADKIN 230 (330)
T ss_pred HHCCCCEEEEeCCCC-------cCCH-HHHHHHHHHHHHHHHhcCCEEEEEECCHHH--------------HHHhCCEEE
Confidence 345679999999831 1222 456789999999999999999999995332 445678888
Q ss_pred EEEcc
Q psy4520 203 IIQQK 207 (291)
Q Consensus 203 ~L~R~ 207 (291)
+++.-
T Consensus 231 vm~~G 235 (330)
T PRK15093 231 VLYCG 235 (330)
T ss_pred EEECC
Confidence 88754
No 146
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=68.42 E-value=40 Score=29.47 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
..+..++.+ -.+-+++++|+-. .+ .| ......+.+.|+.+++ .+..|++++|....
T Consensus 139 qrv~la~al--~~~p~llllDEPt--~~-----LD-~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~------------- 194 (213)
T cd03235 139 QRVLLARAL--VQDPDLLLLDEPF--AG-----VD-PKTQEDIYELLRELRR-EGMTILVVTHDLGL------------- 194 (213)
T ss_pred HHHHHHHHH--HcCCCEEEEeCCc--cc-----CC-HHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-------------
Confidence 334444443 4577999999983 11 12 2345668888888887 58999999996543
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 195 -~~~~~d~i~~l~~ 207 (213)
T cd03235 195 -VLEYFDRVLLLNR 207 (213)
T ss_pred -HHHhcCEEEEEcC
Confidence 4566888888853
No 147
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.41 E-value=40 Score=30.17 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=47.1
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccc
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKA 194 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~I 194 (291)
+..+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|.... +
T Consensus 144 v~laral--~~~p~llllDEPt--~~-----LD~-~~~~~l~~~L~~~~~~~g~tvii~sH~~~~--------------~ 199 (242)
T cd03295 144 VGVARAL--AADPPLLLMDEPF--GA-----LDP-ITRDQLQEEFKRLQQELGKTIVFVTHDIDE--------------A 199 (242)
T ss_pred HHHHHHH--hcCCCEEEecCCc--cc-----CCH-HHHHHHHHHHHHHHHHcCCEEEEEecCHHH--------------H
Confidence 3344443 3567899999983 11 122 335678889999998889999999995332 4
Q ss_pred cccCccEEEEEc
Q psy4520 195 TQESDNVLIIQQ 206 (291)
Q Consensus 195 eQdAD~Vi~L~R 206 (291)
..-||.|++|..
T Consensus 200 ~~~~d~i~~l~~ 211 (242)
T cd03295 200 FRLADRIAIMKN 211 (242)
T ss_pred HHhCCEEEEEEC
Confidence 567888888864
No 148
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=68.28 E-value=29 Score=36.13 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
.....+|.+ -.+-+++|+|+-.- + .| ...+..+.+.|+.++++.+..|++++|.-..
T Consensus 470 QRv~iAraL--~~~p~llllDEPts--~-----LD-~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~------------- 526 (623)
T PRK10261 470 QRICIARAL--ALNPKVIIADEAVS--A-----LD-VSIRGQIINLLLDLQRDFGIAYLFISHDMAV------------- 526 (623)
T ss_pred HHHHHHHHH--hcCCCEEEEeCCcc--c-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------------
Confidence 344444444 45789999999831 1 12 2446778999999999999999999995332
Q ss_pred cccccCccEEEEEcc
Q psy4520 193 KATQESDNVLIIQQK 207 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R~ 207 (291)
+.+-||.|++++.-
T Consensus 527 -v~~~~dri~vl~~G 540 (623)
T PRK10261 527 -VERISHRVAVMYLG 540 (623)
T ss_pred -HHHhCCEEEEEECC
Confidence 55678999999753
No 149
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=68.24 E-value=31 Score=30.27 Aligned_cols=70 Identities=11% Similarity=0.202 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
..+..+|.+. .+-+++++|+-. .+ .| ...+..+.+.|+.++++.+..|++++|....
T Consensus 135 qrl~laral~--~~p~llllDEPt--~~-----LD-~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~------------- 191 (213)
T TIGR01277 135 QRVALARCLV--RPNPILLLDEPF--SA-----LD-PLLREEMLALVKQLCSERQRTLLMVTHHLSD------------- 191 (213)
T ss_pred HHHHHHHHHh--cCCCEEEEcCCC--cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------------
Confidence 3444445443 457899999983 11 12 2445678899999998889999999996543
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+...||.|++++.
T Consensus 192 -~~~~~d~v~~l~~ 204 (213)
T TIGR01277 192 -ARAIASQIAVVSQ 204 (213)
T ss_pred -HHhhcCeEEEEEC
Confidence 4566888888864
No 150
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=68.22 E-value=11 Score=37.55 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhc-CceEEEEeccCCcCC
Q psy4520 150 YMQDTIIQEFRAFASRS-HCHVTLVIHPRKENE 181 (291)
Q Consensus 150 ~~~~~i~r~LK~~Ake~-~VpVilvshpRk~ek 181 (291)
.-..+|+..|+++|.++ +++|+.-.|+|+..+
T Consensus 219 ~~~~~i~~al~~i~~~~~~~~viyp~H~~~~v~ 251 (383)
T COG0381 219 EPLEEICEALREIAEEYPDVIVIYPVHPRPRVR 251 (383)
T ss_pred ccHHHHHHHHHHHHHhCCCceEEEeCCCChhhh
Confidence 56778999999999999 999999999985533
No 151
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=68.06 E-value=30 Score=29.80 Aligned_cols=63 Identities=10% Similarity=-0.063 Sum_probs=42.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 104 TFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 104 d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+..+..+.+++.+.++.+.....++.|||+- ...+ .+- ....++.+.++.+. +.+.||++.+|
T Consensus 17 ~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~g---g~~-~~~~~~~~~i~~~~-~~~kpVia~v~ 79 (177)
T cd07014 17 DTQGNVSGDTTAAQIRDARLDPKVKAIVLRV----NSPG---GSV-TASEVIRAELAAAR-AAGKPVVASGG 79 (177)
T ss_pred CCCCCcCHHHHHHHHHHHhcCCCceEEEEEe----eCCC---cCH-HHHHHHHHHHHHHH-hCCCCEEEEEC
Confidence 4555678999999999988888899999973 1111 121 12234444455544 47999998887
No 152
>PRK13475 ribulose bisphosphate carboxylase; Provisional
Probab=68.01 E-value=66 Score=32.71 Aligned_cols=93 Identities=10% Similarity=0.117 Sum_probs=55.7
Q ss_pred ccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccchhhhhhHHHHHHhhcCCC
Q psy4520 20 FEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLLDNLDKFDEYSDWFKTLP 99 (291)
Q Consensus 20 lEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~p 99 (291)
+=++++++.+-......|.++-+. + +-. +.++-..+.|-++.+ ++.+.++.++-.+..
T Consensus 169 lGLsp~~~a~~~ye~~~GgD~IKD--D-E~l---------------~~q~f~p~~eRv~~~----~~ai~~a~~eTG~~~ 226 (443)
T PRK13475 169 LGLRPEPFAEACYDFWLGGDFIKN--D-EPQ---------------GNQVFAPLKKTVPLV----ADAMKRAQDETGEAK 226 (443)
T ss_pred ccCCHHHHHHHHHHHHhcCCcccc--c-ccc---------------cCCCCCCHHHHHHHH----HHHHHHHHHhhCCce
Confidence 467888988888888778655321 1 111 011111112211111 144555666666778
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhCCCc----EEEEecc
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMYVYDTG----HVIIDNV 135 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~~~gv~----lviIDyL 135 (291)
+|..+-++ -+.+++++++++++..+|.. .++||++
T Consensus 227 ~y~~NiTa-~~~~em~~ra~~a~e~~G~~~~~~~vmv~~~ 265 (443)
T PRK13475 227 LFSANITA-DDHYEMIARGEYILETFGENADHVAFLVDGY 265 (443)
T ss_pred eEeccCCC-CCHHHHHHHHHHHHHhcCCCccceEEEEcCc
Confidence 99877654 26899999999987765755 7888887
No 153
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=67.53 E-value=32 Score=31.66 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|....
T Consensus 141 rl~laraL--~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~L~~~~~~~~~tviivsHd~~~-------------- 196 (257)
T PRK11247 141 RVALARAL--IHRPGLLLLDEPL--GA-----LDA-LTRIEMQDLIESLWQQHGFTVLLVTHDVSE-------------- 196 (257)
T ss_pred HHHHHHHH--hcCCCEEEEeCCC--CC-----CCH-HHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------------
Confidence 34444443 3567999999983 21 122 445678889999988889999999996543
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 197 ~~~~~d~i~~l~~ 209 (257)
T PRK11247 197 AVAMADRVLLIEE 209 (257)
T ss_pred HHHhCCEEEEEEC
Confidence 4567888888864
No 154
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.52 E-value=44 Score=29.87 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -.+-+++++|+-. .+ .|. .....+...|+.++++.+..|++++|....
T Consensus 144 rl~la~al--~~~p~llllDEP~--~~-----LD~-~~~~~l~~~l~~~~~~~~~tvii~sH~~~~-------------- 199 (239)
T cd03296 144 RVALARAL--AVEPKVLLLDEPF--GA-----LDA-KVRKELRRWLRRLHDELHVTTVFVTHDQEE-------------- 199 (239)
T ss_pred HHHHHHHH--hcCCCEEEEcCCc--cc-----CCH-HHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------------
Confidence 34444443 3467999999983 11 121 334567888889988889999999995432
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+...||.|+++..
T Consensus 200 ~~~~~d~i~~l~~ 212 (239)
T cd03296 200 ALEVADRVVVMNK 212 (239)
T ss_pred HHHhCCEEEEEEC
Confidence 4566888888854
No 155
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=67.42 E-value=52 Score=29.13 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=42.0
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .|. .....+.+.|+.+++ .+..|++++|.... +.+-||.|++
T Consensus 159 ~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~-~~~tii~vsH~~~~--------------~~~~~d~i~~ 215 (236)
T cd03219 159 ATDPKLLLLDEPA--AG-----LNP-EETEELAELIRELRE-RGITVLLVEHDMDV--------------VMSLADRVTV 215 (236)
T ss_pred hcCCCEEEEcCCc--cc-----CCH-HHHHHHHHHHHHHHH-CCCEEEEEecCHHH--------------HHHhCCEEEE
Confidence 3567999999983 11 122 334567888888877 58999999995432 4567888888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 216 l~~ 218 (236)
T cd03219 216 LDQ 218 (236)
T ss_pred EeC
Confidence 864
No 156
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=67.31 E-value=42 Score=33.86 Aligned_cols=55 Identities=11% Similarity=0.014 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
....++. .-.+-+++++|+-.- + -|. ..+..+...|+.++++.+..|++++|...
T Consensus 176 rv~iA~a--l~~~p~lllLDEPt~--~-----LD~-~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 176 RVVLARQ--LAKEPFLFLADEPTG--T-----LDP-QTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHHHHH--HhcCCCEEEeeCCcc--c-----CCH-HHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 3344443 346788999999832 1 122 44577889999999999999999999544
No 157
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=67.19 E-value=14 Score=29.29 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCc
Q psy4520 153 DTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFN 209 (291)
Q Consensus 153 ~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~ 209 (291)
.++...++ .||+.+++|+++..+.. ..+.+.||+++.+.-++.
T Consensus 67 ~~~~~~~~-~ak~~g~~vi~iT~~~~-------------~~l~~~ad~~l~~~~~~~ 109 (131)
T PF01380_consen 67 RELIELLR-FAKERGAPVILITSNSE-------------SPLARLADIVLYIPTGEE 109 (131)
T ss_dssp HHHHHHHH-HHHHTTSEEEEEESSTT-------------SHHHHHSSEEEEEESSCG
T ss_pred hhhhhhhH-HHHhcCCeEEEEeCCCC-------------CchhhhCCEEEEecCCCc
Confidence 34677777 99999999999987654 347788899998876543
No 158
>cd03589 CLECT_CEL-1_like C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina. CLECT_CEL-1_like: C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. The CEL-1 CTLD binds three calcium ions and has a high specificity for N-acteylgalactosamine (GalNAc). CEL-1 exhibits strong cytotoxicity which is inhibited by GalNAc. This protein may play a role as a toxin defending against predation. Echinoidin is found in the coelomic fluid of the sea urchin and is specific for GalBeta1-3GalNAc. Echinoidin has a cell adhesive activity towards human cancer cells which is not mediated through the CTLD. Both CEL-1 and Echinoidin are multimeric proteins comprised of multiple dimers linked by disulfide bonds.
Probab=67.12 E-value=4 Score=32.88 Aligned_cols=43 Identities=23% Similarity=0.495 Sum_probs=35.2
Q ss_pred eeeeceEeEEeeCCCCchhhhHhhhhcc-----CCCcccCCCccccccc
Q psy4520 238 ATYNGKCYIFYNRRPMNLRDSLAFCRSR-----GGSLVDESNPALQGFI 281 (291)
Q Consensus 238 l~f~g~~~~f~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 281 (291)
..|+|.+++|++. ..+|.++.++|.+. ||.++--.|++-+-||
T Consensus 6 ~~~~~~Cy~~~~~-~~~w~~A~~~C~~~~~~g~~~~La~i~s~~e~~~l 53 (137)
T cd03589 6 TAFGGYCYRFFGD-RLTWEEAELRCRSFSIPGLIAHLVSIHSQEENDFV 53 (137)
T ss_pred hhhCCEEEEEeCC-CcCHHHHHHHHHhhcCCCCCceEcccCCHHHHHHH
Confidence 3467899999876 88999999999997 6899988887755555
No 159
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=66.60 E-value=41 Score=31.50 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=43.8
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-++-+++++|+-. .+ .|- .....+.+.|+.++++ +..|++++|.... +++-||.|+
T Consensus 139 l~~~p~lllLDEPt--~g-----LD~-~~~~~l~~~l~~~~~~-g~tvi~~sH~~~~--------------~~~~~d~v~ 195 (302)
T TIGR01188 139 LIHQPDVLFLDEPT--TG-----LDP-RTRRAIWDYIRALKEE-GVTILLTTHYMEE--------------ADKLCDRIA 195 (302)
T ss_pred HhcCCCEEEEeCCC--cC-----CCH-HHHHHHHHHHHHHHhC-CCEEEEECCCHHH--------------HHHhCCEEE
Confidence 44678999999983 21 121 3345678888888765 9999999995432 567788888
Q ss_pred EEEcc
Q psy4520 203 IIQQK 207 (291)
Q Consensus 203 ~L~R~ 207 (291)
++..-
T Consensus 196 ~l~~G 200 (302)
T TIGR01188 196 IIDHG 200 (302)
T ss_pred EEECC
Confidence 88653
No 160
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=66.59 E-value=44 Score=32.25 Aligned_cols=56 Identities=11% Similarity=0.073 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
.....+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.++++.+++|++++|...
T Consensus 138 qRvalAraL--~~~p~lllLDEPt--s~-----LD~-~~~~~l~~~L~~l~~~~g~tiiivtH~~~ 193 (354)
T TIGR02142 138 QRVAIGRAL--LSSPRLLLMDEPL--AA-----LDD-PRKYEILPYLERLHAEFGIPILYVSHSLQ 193 (354)
T ss_pred HHHHHHHHH--HcCCCEEEEcCCC--cC-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 344555544 3467899999983 11 122 34567899999999999999999999543
No 161
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=66.15 E-value=49 Score=31.96 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
.....+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.++++.++.|++++|....
T Consensus 135 qRvalaraL--~~~p~llLLDEPt--s~-----LD~-~~~~~l~~~L~~l~~~~g~tii~vTHd~~~------------- 191 (352)
T PRK11144 135 QRVAIGRAL--LTAPELLLMDEPL--AS-----LDL-PRKRELLPYLERLAREINIPILYVSHSLDE------------- 191 (352)
T ss_pred HHHHHHHHH--HcCCCEEEEcCCc--cc-----CCH-HHHHHHHHHHHHHHHhcCCeEEEEecCHHH-------------
Confidence 344445544 3567899999882 21 122 334668889999999999999999995442
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+.+.||.|+++..
T Consensus 192 -~~~~~d~i~~l~~ 204 (352)
T PRK11144 192 -ILRLADRVVVLEQ 204 (352)
T ss_pred -HHHhCCEEEEEeC
Confidence 4456677777754
No 162
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.11 E-value=39 Score=31.17 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=46.1
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-..-+++|+|+-.- + .| ......+.+.|+.++++.++.|++++|.-.. +..-||.|+
T Consensus 152 L~~~p~llilDEPt~--g-----LD-~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~--------------~~~~~drv~ 209 (277)
T PRK13652 152 IAMEPQVLVLDEPTA--G-----LD-PQGVKELIDFLNDLPETYGMTVIFSTHQLDL--------------VPEMADYIY 209 (277)
T ss_pred HHcCCCEEEEeCCcc--c-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------------HHHhCCEEE
Confidence 345678999999831 1 12 1345678899999999889999999996432 556789999
Q ss_pred EEEcc
Q psy4520 203 IIQQK 207 (291)
Q Consensus 203 ~L~R~ 207 (291)
+++..
T Consensus 210 ~l~~G 214 (277)
T PRK13652 210 VMDKG 214 (277)
T ss_pred EEECC
Confidence 99753
No 163
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=65.85 E-value=46 Score=28.47 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
..+..+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|....
T Consensus 104 qrl~laral--~~~p~llllDEP~--~~-----LD~-~~~~~~~~~l~~~~~~~~~tiii~sh~~~~------------- 160 (180)
T cd03214 104 QRVLLARAL--AQEPPILLLDEPT--SH-----LDI-AHQIELLELLRRLARERGKTVVMVLHDLNL------------- 160 (180)
T ss_pred HHHHHHHHH--hcCCCEEEEeCCc--cC-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------------
Confidence 344445544 3467999999983 11 122 345678888889988878999999996442
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+.+.||.++++..
T Consensus 161 -~~~~~d~~~~l~~ 173 (180)
T cd03214 161 -AARYADRVILLKD 173 (180)
T ss_pred -HHHhCCEEEEEEC
Confidence 4566788888764
No 164
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=65.80 E-value=34 Score=31.32 Aligned_cols=98 Identities=11% Similarity=0.131 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHH-hCCCcEEEEeccccccC-------C-CCC---CccHH-HHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 109 QPLKLVMEAVEHAMY-VYDTGHVIIDNVQFMLG-------L-SDS---ALDRF-YMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~-~~gv~lviIDyLqlm~~-------~-~~~---~~~r~-~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.+++.+.+....+.. -.+.+.||||+++-+.. . ... ....| .....+++.|+.| ++++++|++++|
T Consensus 63 ~~~~~~~d~l~~~~~~~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L-~~~g~nII~tAh 141 (220)
T TIGR01618 63 PPIQAMVEFYVMQNIQAVKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVL-KESNKNIYATAW 141 (220)
T ss_pred CCHHHHHHHHHHHHhccccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHH-HhCCCcEEEEEe
Confidence 356777777765432 35689999999865432 1 111 11123 3444577788888 459999999999
Q ss_pred c--CCcC---CCC-cc--cccccc--ccccccCccEEEEEcc
Q psy4520 176 P--RKEN---EQL-TV--NSVFGS--AKATQESDNVLIIQQK 207 (291)
Q Consensus 176 p--Rk~e---k~p-~l--sDLrgS--g~IeQdAD~Vi~L~R~ 207 (291)
- |+.. ..+ +- -+|++. ..+.-.+|.|.-+.-+
T Consensus 142 e~~~~~~de~G~~~~r~~P~i~~K~~n~l~G~~DvV~rl~i~ 183 (220)
T TIGR01618 142 ELTNQSSGESGQIYNRYQPDIREKVLNAFLGLTDVVGRIVLN 183 (220)
T ss_pred eccccccCCCCCCcceechhhhhhHHHhhcccccEEEEEEEc
Confidence 5 3322 221 11 255531 2466788999877643
No 165
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=65.66 E-value=20 Score=37.33 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=50.7
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-..-+++|.|+=+=. .| -..|.+|..-||.+.+++|+.|++++|.=. -+++-||.|+
T Consensus 169 La~~P~LLIaDEPTTa-------LD-vt~q~qIL~llk~l~~e~g~a~l~ITHDl~--------------Vva~~aDrv~ 226 (539)
T COG1123 169 LALKPKLLIADEPTTA-------LD-VTTQAQILDLLKDLQRELGMAVLFITHDLG--------------VVAELADRVV 226 (539)
T ss_pred HhCCCCEEEECCCccc-------cC-HHHHHHHHHHHHHHHHHcCcEEEEEcCCHH--------------HHHHhcCeEE
Confidence 4455679999987421 12 245788999999999999999999999543 3889999999
Q ss_pred EEEccC
Q psy4520 203 IIQQKF 208 (291)
Q Consensus 203 ~L~R~~ 208 (291)
++|+-+
T Consensus 227 Vm~~G~ 232 (539)
T COG1123 227 VMYKGE 232 (539)
T ss_pred EEECCE
Confidence 999854
No 166
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=65.59 E-value=47 Score=32.24 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGS 191 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgS 191 (291)
.+..+.+|.++ .+-+++++|+-. .+ .| ......+.+.|+++.++.+++|++|+|....
T Consensus 140 ~QRvaLARaL~--~~P~llLLDEP~--s~-----LD-~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~e------------ 197 (353)
T TIGR03265 140 QQRVALARALA--TSPGLLLLDEPL--SA-----LD-ARVREHLRTEIRQLQRRLGVTTIMVTHDQEE------------ 197 (353)
T ss_pred HHHHHHHHHHh--cCCCEEEEcCCc--cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH------------
Confidence 34455555543 456899999882 21 12 2345678999999999999999999995442
Q ss_pred ccccccCccEEEEEc
Q psy4520 192 AKATQESDNVLIIQQ 206 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R 206 (291)
+...||.|+++..
T Consensus 198 --a~~l~d~i~vl~~ 210 (353)
T TIGR03265 198 --ALSMADRIVVMNH 210 (353)
T ss_pred --HHHhCCEEEEEEC
Confidence 3455666666654
No 167
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=65.48 E-value=57 Score=29.53 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=42.0
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .| ......+.+.|+.++++ ++.|++++|.... +..-||.|++
T Consensus 168 ~~~p~llllDEPt--~~-----LD-~~~~~~l~~~l~~l~~~-g~tiiivsH~~~~--------------~~~~~d~i~~ 224 (257)
T PRK10619 168 AMEPEVLLFDEPT--SA-----LD-PELVGEVLRIMQQLAEE-GKTMVVVTHEMGF--------------ARHVSSHVIF 224 (257)
T ss_pred hcCCCEEEEeCCc--cc-----CC-HHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH--------------HHHhcCEEEE
Confidence 3466899999983 21 12 23345688888888764 9999999995432 3456899988
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+.+
T Consensus 225 l~~ 227 (257)
T PRK10619 225 LHQ 227 (257)
T ss_pred EEC
Confidence 865
No 168
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=65.27 E-value=60 Score=29.78 Aligned_cols=69 Identities=12% Similarity=0.195 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+ .|. ..+..+.+.|+.++++.+..|++++|....
T Consensus 159 rl~laral--~~~p~lllLDEPt--~~-----LD~-~~~~~~~~~l~~~~~~~~~tiiivsH~~~~-------------- 214 (268)
T PRK10419 159 RVCLARAL--AVEPKLLILDEAV--SN-----LDL-VLQAGVIRLLKKLQQQFGTACLFITHDLRL-------------- 214 (268)
T ss_pred HHHHHHHH--hcCCCEEEEeCCC--cc-----cCH-HHHHHHHHHHHHHHHHcCcEEEEEECCHHH--------------
Confidence 34444443 3567999999983 11 122 345678899999999989999999996542
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|++|..
T Consensus 215 i~~~~d~i~~l~~ 227 (268)
T PRK10419 215 VERFCQRVMVMDN 227 (268)
T ss_pred HHHhCCEEEEEEC
Confidence 5566888888864
No 169
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=65.00 E-value=30 Score=31.62 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=44.0
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|.... +..-||.|++
T Consensus 136 ~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~L~~~~~~~g~tiiivsH~~~~--------------i~~~~d~i~~ 193 (251)
T PRK09544 136 LNRPQLLVLDEPT--QG-----VDV-NGQVALYDLIDQLRRELDCAVLMVSHDLHL--------------VMAKTDEVLC 193 (251)
T ss_pred hcCCCEEEEeCCC--cC-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------------HHHhCCEEEE
Confidence 3567999999983 11 122 345678888999998889999999996543 5566888888
Q ss_pred EE
Q psy4520 204 IQ 205 (291)
Q Consensus 204 L~ 205 (291)
+.
T Consensus 194 l~ 195 (251)
T PRK09544 194 LN 195 (251)
T ss_pred EC
Confidence 84
No 170
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=64.97 E-value=48 Score=32.22 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
+..+.+|.+ -..-+++++|+-. .+ .|. .....+.+.|+++.++.+++|++|+|...
T Consensus 141 QRvalARAL--~~~P~llLLDEP~--s~-----LD~-~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 196 (356)
T PRK11650 141 QRVAMGRAI--VREPAVFLFDEPL--SN-----LDA-KLRVQMRLEIQRLHRRLKTTSLYVTHDQV 196 (356)
T ss_pred HHHHHHHHH--hcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 344445554 3567899999982 21 122 34567889999999999999999999543
No 171
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=64.87 E-value=54 Score=29.55 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+ .|. ..+..+...|+.++++.++.|++++|....
T Consensus 154 rv~laral--~~~p~llllDEP~--~~-----LD~-~~~~~l~~~l~~~~~~~~~tiiivsH~~~~-------------- 209 (252)
T TIGR03005 154 RVAIARAL--AMRPKVMLFDEVT--SA-----LDP-ELVGEVLNVIRRLASEHDLTMLLVTHEMGF-------------- 209 (252)
T ss_pred HHHHHHHH--HcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHHhcCcEEEEEeCCHHH--------------
Confidence 33444443 3567899999983 11 121 345678889999999889999999995432
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+..-||.+++|..
T Consensus 210 ~~~~~d~i~~l~~ 222 (252)
T TIGR03005 210 AREFADRVCFFDK 222 (252)
T ss_pred HHHhcCEEEEEEC
Confidence 4456888888864
No 172
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=64.83 E-value=40 Score=31.26 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=44.8
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
--..-+++++|+-. .+ .| ...+..+.+.|+.++++.++.|++++|.-.. ++. ||.|+
T Consensus 155 l~~~p~lllLDEPt--~g-----LD-~~~~~~l~~~l~~l~~~~~~tilivsH~~~~--------------~~~-~d~i~ 211 (279)
T PRK13635 155 LALQPDIIILDEAT--SM-----LD-PRGRREVLETVRQLKEQKGITVLSITHDLDE--------------AAQ-ADRVI 211 (279)
T ss_pred HHcCCCEEEEeCCc--cc-----CC-HHHHHHHHHHHHHHHHcCCCEEEEEecCHHH--------------HHc-CCEEE
Confidence 34567999999983 21 12 1345678899999999999999999995432 344 89999
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
+|+.
T Consensus 212 ~l~~ 215 (279)
T PRK13635 212 VMNK 215 (279)
T ss_pred EEEC
Confidence 9975
No 173
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.82 E-value=41 Score=29.94 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=44.6
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .| ......+.+.|+.++++.++.|++++|.... +...||.+++
T Consensus 146 ~~~p~llllDEP~--~g-----LD-~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~--------------~~~~~d~i~~ 203 (232)
T cd03300 146 VNEPKVLLLDEPL--GA-----LD-LKLRKDMQLELKRLQKELGITFVFVTHDQEE--------------ALTMSDRIAV 203 (232)
T ss_pred hcCCCEEEEcCCc--cc-----CC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------------HHHhcCEEEE
Confidence 3466999999983 22 12 2345678888999998889999999995542 4567898888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
|..
T Consensus 204 l~~ 206 (232)
T cd03300 204 MNK 206 (232)
T ss_pred EEC
Confidence 865
No 174
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=64.79 E-value=55 Score=29.59 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=42.4
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .| ......+...|+.++++ +..|++++|.... +.+-||.|++
T Consensus 153 ~~~p~llllDEPt--~~-----LD-~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~--------------~~~~~d~i~~ 209 (256)
T TIGR03873 153 AQEPKLLLLDEPT--NH-----LD-VRAQLETLALVRELAAT-GVTVVAALHDLNL--------------AASYCDHVVV 209 (256)
T ss_pred hcCCCEEEEcCcc--cc-----CC-HHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH--------------HHHhCCEEEE
Confidence 3467999999983 11 12 13345677888888654 8899999995443 5677888888
Q ss_pred EEcc
Q psy4520 204 IQQK 207 (291)
Q Consensus 204 L~R~ 207 (291)
|.+.
T Consensus 210 l~~G 213 (256)
T TIGR03873 210 LDGG 213 (256)
T ss_pred EeCC
Confidence 8653
No 175
>cd03588 CLECT_CSPGs C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins. CLECT_CSPGs: C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins (CSPGs) in human and chicken aggrecan, frog brevican, and zebra fish dermacan. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Xenopus brevican is expressed in the notochord and the brain during early embryogenesis. Zebra fish dermacan is expressed in dermal bones and may play a role in dermal bone development. CSPGs do contain LINK domain(s) which bind HA. These LINK domains are considered by one classif
Probab=64.75 E-value=6.4 Score=31.65 Aligned_cols=42 Identities=26% Similarity=0.535 Sum_probs=33.3
Q ss_pred eeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCcccccc
Q psy4520 238 ATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGF 280 (291)
Q Consensus 238 l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (291)
..|.+.++.|+ ....++.++.++|.+.||.|+.=.|..-+-|
T Consensus 6 ~~~~~~Cy~~~-~~~~sw~~A~~~C~~~gg~La~i~s~~e~~f 47 (124)
T cd03588 6 DKFQGHCYRHF-PDRETWEDAERRCREQQGHLSSIVTPEEQEF 47 (124)
T ss_pred eecCCEEEEEE-CCccCHHHHHHHHHhcCCEEeccCCHHHHHH
Confidence 45778899887 4679999999999999999987666554444
No 176
>PRK10908 cell division protein FtsE; Provisional
Probab=64.71 E-value=39 Score=29.77 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=42.8
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-.- + .|. ..+..+.+.|+.++++ +..|++++|.... +.+-||.|++
T Consensus 153 ~~~p~llllDEPt~--~-----LD~-~~~~~l~~~l~~~~~~-~~tiii~sH~~~~--------------~~~~~d~i~~ 209 (222)
T PRK10908 153 VNKPAVLLADEPTG--N-----LDD-ALSEGILRLFEEFNRV-GVTVLMATHDIGL--------------ISRRSYRMLT 209 (222)
T ss_pred HcCCCEEEEeCCCC--c-----CCH-HHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------------HHHhCCEEEE
Confidence 35678999999831 1 121 3356678888888765 8999999996442 5677899999
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+++
T Consensus 210 l~~ 212 (222)
T PRK10908 210 LSD 212 (222)
T ss_pred EEC
Confidence 864
No 177
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=64.56 E-value=39 Score=34.10 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....++. .-.+-+++|+|+-.- + -| ......+.+.|+.++++.+..|++++|....
T Consensus 435 rv~lara--l~~~p~lLllDEPt~--~-----LD-~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~-------------- 490 (520)
T TIGR03269 435 RVALAQV--LIKEPRIVILDEPTG--T-----MD-PITKVDVTHSILKAREEMEQTFIIVSHDMDF-------------- 490 (520)
T ss_pred HHHHHHH--HhcCCCEEEEeCCcc--c-----CC-HHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH--------------
Confidence 3344443 345679999999831 1 12 2445678899999999999999999996553
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|++++.
T Consensus 491 ~~~~~d~i~~l~~ 503 (520)
T TIGR03269 491 VLDVCDRAALMRD 503 (520)
T ss_pred HHHhCCEEEEEEC
Confidence 4567899999864
No 178
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=64.40 E-value=23 Score=27.60 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCC--CCccHHHHHHHHHHHHHHHHHh-cCceEEEEec
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSD--SALDRFYMQDTIIQEFRAFASR-SHCHVTLVIH 175 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~--~~~~r~~~~~~i~r~LK~~Ake-~~VpVilvsh 175 (291)
+...+...++.++....-.+|+||++..+..... ........+..+...+....+. .+|.|++.+.
T Consensus 42 ~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn 110 (132)
T PF00004_consen 42 SEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTN 110 (132)
T ss_dssp HHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEES
T ss_pred cccccccccccccccccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeC
Confidence 3445555555543333368999999976654321 1122334455566666665555 3466666665
No 179
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=64.25 E-value=55 Score=29.43 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=44.4
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .|. .....+...|+.++++.+..|++++|.... +..-||.++
T Consensus 163 l~~~p~vlllDEP~--~~-----LD~-~~~~~l~~~l~~~~~~~~~tii~vsH~~~~--------------~~~~~d~~~ 220 (253)
T TIGR02323 163 LVTRPRLVFMDEPT--GG-----LDV-SVQARLLDLLRGLVRDLGLAVIIVTHDLGV--------------ARLLAQRLL 220 (253)
T ss_pred HhcCCCEEEEcCCC--cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------------HHHhcCEEE
Confidence 34577999999983 21 121 334568888899988889999999996442 445678888
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 221 ~l~~ 224 (253)
T TIGR02323 221 VMQQ 224 (253)
T ss_pred EEEC
Confidence 8864
No 180
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=64.06 E-value=35 Score=28.32 Aligned_cols=45 Identities=4% Similarity=-0.107 Sum_probs=32.3
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
.++++|++.....- . ........+.++.+.++++|++.+|+++=+
T Consensus 86 ~~~~vi~~~~~p~~-~---~~~~~~~~~~~~n~~l~~~a~~~~~~~id~ 130 (169)
T cd01828 86 PNIKIVVQSILPVG-E---LKSIPNEQIEELNRQLAQLAQQEGVTFLDL 130 (169)
T ss_pred CCCeEEEEecCCcC-c---cCcCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 68999999887432 1 111233556778889999999999999844
No 181
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=63.91 E-value=60 Score=27.78 Aligned_cols=66 Identities=12% Similarity=0.002 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCcc-HHHHHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALD-RFYMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~-r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
.-.+.++..+..+|+.+.+++-=..-.... ...+ ....-..-...|..+|+++|+++++..|....
T Consensus 45 ~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~-~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D 111 (189)
T TIGR02432 45 EEAEFVQQFCKKLNIPLEIKKVDVKALAKG-KKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADD 111 (189)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecchhhccc-cCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHH
Confidence 345666777788999988876421100000 1111 11111224556788999999999999996544
No 182
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=63.71 E-value=63 Score=29.57 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccc
Q psy4520 108 PQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNS 187 (291)
Q Consensus 108 ~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsD 187 (291)
..|--+....+=..+.-..-+++++|+-. .+. |. .....+.+.|+.++++.+..|++++|....
T Consensus 142 ~LS~G~~qrl~laral~~~p~lllLDEPt--~~L-----D~-~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-------- 205 (269)
T PRK13648 142 ALSGGQKQRVAIAGVLALNPSVIILDEAT--SML-----DP-DARQNLLDLVRKVKSEHNITIISITHDLSE-------- 205 (269)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCc--ccC-----CH-HHHHHHHHHHHHHHHhcCCEEEEEecCchH--------
Confidence 34444433332222334567999999983 211 21 334567888888888889999999995432
Q ss_pred ccccccccccCccEEEEEc
Q psy4520 188 VFGSAKATQESDNVLIIQQ 206 (291)
Q Consensus 188 LrgSg~IeQdAD~Vi~L~R 206 (291)
+.. ||.|+++..
T Consensus 206 ------~~~-~d~i~~l~~ 217 (269)
T PRK13648 206 ------AME-ADHVIVMNK 217 (269)
T ss_pred ------Hhc-CCEEEEEEC
Confidence 334 899999964
No 183
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=63.62 E-value=55 Score=28.57 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
..+..++.+...-+.+++++|+-. .+. |. .....+.+.|+++++ .+..|++++|....
T Consensus 94 qrl~laral~~~~~p~llLlDEPt--~~L-----D~-~~~~~l~~~l~~~~~-~g~tvIivSH~~~~------------- 151 (176)
T cd03238 94 QRVKLASELFSEPPGTLFILDEPS--TGL-----HQ-QDINQLLEVIKGLID-LGNTVILIEHNLDV------------- 151 (176)
T ss_pred HHHHHHHHHhhCCCCCEEEEeCCc--ccC-----CH-HHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-------------
Confidence 344555555444338999999983 111 21 334557777888764 69999999996542
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+ +.||.++++.+
T Consensus 152 -~-~~~d~i~~l~~ 163 (176)
T cd03238 152 -L-SSADWIIDFGP 163 (176)
T ss_pred -H-HhCCEEEEECC
Confidence 2 35888888854
No 184
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=63.57 E-value=54 Score=29.23 Aligned_cols=67 Identities=12% Similarity=0.226 Sum_probs=44.3
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccc
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKA 194 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~I 194 (291)
+..++.+ -.+-+++++|+-. .+- |. .....+.+.|+.++++ +..|++++|.... +
T Consensus 145 v~la~al--~~~p~llllDEP~--~~L-----D~-~~~~~l~~~l~~~~~~-~~tiii~sH~~~~--------------~ 199 (240)
T PRK09493 145 VAIARAL--AVKPKLMLFDEPT--SAL-----DP-ELRHEVLKVMQDLAEE-GMTMVIVTHEIGF--------------A 199 (240)
T ss_pred HHHHHHH--hcCCCEEEEcCCc--ccC-----CH-HHHHHHHHHHHHHHHc-CCEEEEEeCCHHH--------------H
Confidence 3344443 3567899999983 211 21 3345677788888754 8999999996542 4
Q ss_pred cccCccEEEEEc
Q psy4520 195 TQESDNVLIIQQ 206 (291)
Q Consensus 195 eQdAD~Vi~L~R 206 (291)
..-||.++++..
T Consensus 200 ~~~~d~i~~l~~ 211 (240)
T PRK09493 200 EKVASRLIFIDK 211 (240)
T ss_pred HHhCCEEEEEEC
Confidence 466888888864
No 185
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=63.35 E-value=58 Score=28.35 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -.+-+++++|+-. .+. | ......+.+.|+.++++ +..|++++|....
T Consensus 145 rl~la~al--~~~p~lllLDEPt--~~L-----D-~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~-------------- 199 (214)
T TIGR02673 145 RVAIARAI--VNSPPLLLADEPT--GNL-----D-PDLSERILDLLKRLNKR-GTTVIVATHDLSL-------------- 199 (214)
T ss_pred HHHHHHHH--hCCCCEEEEeCCc--ccC-----C-HHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH--------------
Confidence 33444433 3567999999983 111 2 13345678888887654 8999999995442
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+.||.|+++.+
T Consensus 200 ~~~~~d~i~~l~~ 212 (214)
T TIGR02673 200 VDRVAHRVIILDD 212 (214)
T ss_pred HHHhcCEEEEecC
Confidence 4566888888753
No 186
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=63.10 E-value=80 Score=28.36 Aligned_cols=47 Identities=23% Similarity=0.428 Sum_probs=30.8
Q ss_pred CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec--cCCcC
Q psy4520 126 DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH--PRKEN 180 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh--pRk~e 180 (291)
.+++++||.+|.+.+ ....|..+..-+..+- +.+.+|++.+. |....
T Consensus 97 ~~DlL~iDDi~~l~~-------~~~~q~~lf~l~n~~~-~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 97 SADLLIIDDIQFLAG-------KQRTQEELFHLFNRLI-ESGKQLILTSDRPPSELS 145 (219)
T ss_dssp TSSEEEEETGGGGTT-------HHHHHHHHHHHHHHHH-HTTSEEEEEESS-TTTTT
T ss_pred cCCEEEEecchhhcC-------chHHHHHHHHHHHHHH-hhCCeEEEEeCCCCcccc
Confidence 589999999987642 1223455555555554 55889988886 55543
No 187
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=62.99 E-value=60 Score=28.83 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|.-..
T Consensus 133 rv~laral--~~~p~vllLDEPt--~~-----LD~-~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-------------- 188 (230)
T TIGR02770 133 RVMIALAL--LLEPPFLIADEPT--TD-----LDV-VNQARVLKLLRELRQLFGTGILLITHDLGV-------------- 188 (230)
T ss_pred HHHHHHHH--hcCCCEEEEcCCc--cc-----cCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------------
Confidence 33444443 3567899999983 11 122 334678888999988889999999995332
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 189 ~~~~~d~i~~l~~ 201 (230)
T TIGR02770 189 VARIADEVAVMDD 201 (230)
T ss_pred HHHhCCEEEEEEC
Confidence 4456899999865
No 188
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=62.80 E-value=40 Score=35.11 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....++.+ -..-+++|+|+-.- + -|. ..+.++.+-|+.++++.++.|++++|....
T Consensus 176 Rv~iA~AL--~~~P~lLllDEPt~--~-----LD~-~~~~~l~~ll~~l~~~~g~tvi~itHdl~~-------------- 231 (623)
T PRK10261 176 RVMIAMAL--SCRPAVLIADEPTT--A-----LDV-TIQAQILQLIKVLQKEMSMGVIFITHDMGV-------------- 231 (623)
T ss_pred HHHHHHHH--hCCCCEEEEeCCCC--c-----cCH-HHHHHHHHHHHHHHHhcCCEEEEEcCCHHH--------------
Confidence 34444443 45788999999842 1 122 446778999999999999999999996543
Q ss_pred ccccCccEEEEE
Q psy4520 194 ATQESDNVLIIQ 205 (291)
Q Consensus 194 IeQdAD~Vi~L~ 205 (291)
+.+-||.|++++
T Consensus 232 ~~~~adri~vl~ 243 (623)
T PRK10261 232 VAEIADRVLVMY 243 (623)
T ss_pred HHHhCCEEEEee
Confidence 345556666665
No 189
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=62.74 E-value=64 Score=28.50 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=42.4
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
--.+-+++++|+-. .+ .|. .....+.+.|+.++++ +..|++++|.... +.+-||.|+
T Consensus 148 l~~~p~llllDEPt--~~-----LD~-~~~~~~~~~l~~~~~~-~~tii~~sH~~~~--------------~~~~~d~i~ 204 (232)
T cd03218 148 LATNPKFLLLDEPF--AG-----VDP-IAVQDIQKIIKILKDR-GIGVLITDHNVRE--------------TLSITDRAY 204 (232)
T ss_pred HhcCCCEEEecCCc--cc-----CCH-HHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------------HHHhCCEEE
Confidence 34567999999983 11 122 3456688888888764 8999999995432 567788888
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 205 ~l~~ 208 (232)
T cd03218 205 IIYE 208 (232)
T ss_pred EEEC
Confidence 8854
No 190
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=62.38 E-value=64 Score=31.27 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+....+|.+. .+-++++.|+-. .. .| ......+.+-|+.+++++++.|++++|....
T Consensus 147 QRV~IARAL~--~~P~iLLlDEPt--s~-----LD-~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~------------- 203 (343)
T TIGR02314 147 QRVAIARALA--SNPKVLLCDEAT--SA-----LD-PATTQSILELLKEINRRLGLTILLITHEMDV------------- 203 (343)
T ss_pred HHHHHHHHHH--hCCCEEEEeCCc--cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------------
Confidence 3444555543 457999999983 11 12 1334678999999999999999999995443
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 204 -v~~~~d~v~vl~~ 216 (343)
T TIGR02314 204 -VKRICDCVAVISN 216 (343)
T ss_pred -HHHhCCEEEEEEC
Confidence 4456777877764
No 191
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=62.32 E-value=46 Score=29.12 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=41.7
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .|. .....+.+.|+.++++ +..|++++|.... +..-||.|++
T Consensus 152 ~~~p~illlDEPt--~~-----LD~-~~~~~l~~~l~~~~~~-~~tii~~tH~~~~--------------~~~~~d~i~~ 208 (218)
T cd03266 152 VHDPPVLLLDEPT--TG-----LDV-MATRALREFIRQLRAL-GKCILFSTHIMQE--------------VERLCDRVVV 208 (218)
T ss_pred hcCCCEEEEcCCC--cC-----CCH-HHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------------HHHhcCEEEE
Confidence 4567999999983 11 121 3356688888888654 8999999995442 4566788888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 209 l~~ 211 (218)
T cd03266 209 LHR 211 (218)
T ss_pred EEC
Confidence 854
No 192
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=62.29 E-value=70 Score=30.44 Aligned_cols=56 Identities=13% Similarity=0.264 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
.....+|.+. .+-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|...
T Consensus 107 qRvalaraL~--~~p~lllLDEP~--s~-----LD~-~~~~~l~~~l~~l~~~~g~tiiivTHd~~ 162 (325)
T TIGR01187 107 QRVALARALV--FKPKILLLDEPL--SA-----LDK-KLRDQMQLELKTIQEQLGITFVFVTHDQE 162 (325)
T ss_pred HHHHHHHHHH--hCCCEEEEeCCC--cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3445555543 456899999972 11 122 34567889999999999999999999543
No 193
>cd03597 CLECT_attractin_like C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP). CLECT_attractin_like: C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Mouse AtrN (the product of the mahogany gene) has been shown to bind Agouti protein and to function in agouti-induced pigmentation and obesity. Mutations in AtrN have also been shown to cause spongiform encephalopathy and hypomyelination in rats and hamsters. The cytoplasmic region of mouse ALP has been shown to binds to melanocortin receptor (MCR4). Signaling through MCR4 plays a role in appetite suppression. Attractin may have therapeutic potential in the treatment of obesity. Human attractin (hAtrN) has been shown to be expressed on activated T cells and released extracellularly. The
Probab=62.07 E-value=8.8 Score=31.41 Aligned_cols=43 Identities=12% Similarity=0.253 Sum_probs=34.2
Q ss_pred eeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 238 ATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 238 l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
..|.+.+++|+ ...+++.++..+|.+.||.++-..|..-+-||
T Consensus 6 ~~~~~~Cy~~~-~~~~tw~~A~~~C~~~g~~La~i~~~~E~~fi 48 (129)
T cd03597 6 HLVGNSCLKIN-TARESYDNAKLYCRNLNAVLASLTTQKKVEFV 48 (129)
T ss_pred EEcCCEEEEEE-cCCCCHHHHHHHHHHcCCEEcCCCCHHHHHHH
Confidence 34567788765 55799999999999999999998876655554
No 194
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.92 E-value=61 Score=27.65 Aligned_cols=59 Identities=20% Similarity=0.328 Sum_probs=42.4
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLII 204 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L 204 (291)
..-+++++|+-. .+ .| ...+..+.+.|+.++++.+..|++++|.... ++.-||.++++
T Consensus 117 ~~p~llilDEP~--~~-----LD-~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~--------------~~~~~d~i~~l 174 (178)
T cd03229 117 MDPDVLLLDEPT--SA-----LD-PITRREVRALLKSLQAQLGITVVLVTHDLDE--------------AARLADRVVVL 174 (178)
T ss_pred CCCCEEEEeCCc--cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------------HHHhcCEEEEE
Confidence 467999999983 21 12 2445678888999998889999999996542 44557777777
Q ss_pred E
Q psy4520 205 Q 205 (291)
Q Consensus 205 ~ 205 (291)
.
T Consensus 175 ~ 175 (178)
T cd03229 175 R 175 (178)
T ss_pred e
Confidence 4
No 195
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=61.92 E-value=45 Score=30.12 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.++...++.+..-.+-.+|++|+.- .+.. ..|.. +....-++.++++.++.|++++|-
T Consensus 95 ~e~~~~a~il~~~~~~sLvLLDEp~--~gT~--~lD~~---~~~~~il~~l~~~~~~~vlisTH~ 152 (222)
T cd03285 95 AEMLETAAILKSATENSLIIIDELG--RGTS--TYDGF---GLAWAIAEYIATQIKCFCLFATHF 152 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCc--CCCC--hHHHH---HHHHHHHHHHHhcCCCeEEEEech
Confidence 3445555444334567899999992 1111 12222 222223356666678999999995
No 196
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=61.66 E-value=50 Score=28.89 Aligned_cols=68 Identities=13% Similarity=0.256 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....+|.+ -.+-+++++|+-. .+ -|. .....+.+.|+.+++ .+..|++++|.-. .
T Consensus 140 rv~laral--~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~-~~~tiii~sH~~~--------------~ 194 (222)
T cd03224 140 MLAIARAL--MSRPKLLLLDEPS--EG-----LAP-KIVEEIFEAIRELRD-EGVTILLVEQNAR--------------F 194 (222)
T ss_pred HHHHHHHH--hcCCCEEEECCCc--cc-----CCH-HHHHHHHHHHHHHHH-CCCEEEEEeCCHH--------------H
Confidence 34444444 3567999999983 21 122 335668888888876 5899999999433 2
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 195 ~~~~~d~i~~l~~ 207 (222)
T cd03224 195 ALEIADRAYVLER 207 (222)
T ss_pred HHHhccEEEEeeC
Confidence 4566888888853
No 197
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=61.62 E-value=56 Score=28.41 Aligned_cols=50 Identities=16% Similarity=-0.039 Sum_probs=26.0
Q ss_pred CCcEEEEeccccccCCCCCCccH--HHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 126 DTGHVIIDNVQFMLGLSDSALDR--FYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~~~~r--~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+.+.|+||-|+.+....-...+. ...+.+-+..|-..-++.++++++|+-
T Consensus 73 ~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsn 124 (169)
T cd00544 73 PGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSN 124 (169)
T ss_pred CCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 56789999997775422111110 011222223233333357899998863
No 198
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=61.57 E-value=60 Score=32.60 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=32.6
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
.-.+-+++++|+-.- + -| ......+.+.|+.++++ +..|++++|...
T Consensus 156 l~~~p~lllLDEPt~--~-----LD-~~~~~~l~~~l~~l~~~-~~tvii~sHd~~ 202 (501)
T PRK10762 156 LSFESKVIIMDEPTD--A-----LT-DTETESLFRVIRELKSQ-GRGIVYISHRLK 202 (501)
T ss_pred HhcCCCEEEEeCCcC--C-----CC-HHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 446789999999842 1 12 13456677788888654 899999999543
No 199
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=61.53 E-value=72 Score=28.55 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -.+-+++|+|+-.- + -| ......+.+.|+.++++ +..|++++|....
T Consensus 152 rv~la~al--~~~p~lllLDEPt~--~-----LD-~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~~-------------- 206 (250)
T PRK11264 152 RVAIARAL--AMRPEVILFDEPTS--A-----LD-PELVGEVLNTIRQLAQE-KRTMVIVTHEMSF-------------- 206 (250)
T ss_pred HHHHHHHH--hcCCCEEEEeCCCc--c-----CC-HHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH--------------
Confidence 33444443 35678999999831 1 12 13345677777887765 8999999996432
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 207 ~~~~~d~i~~l~~ 219 (250)
T PRK11264 207 ARDVADRAIFMDQ 219 (250)
T ss_pred HHHhcCEEEEEEC
Confidence 4466899999975
No 200
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=61.39 E-value=43 Score=30.72 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=44.5
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .|. ..+..+.+.|+.++++.+..|++++|.... +..-||.|++
T Consensus 159 ~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~l~~~~~~~g~tiiivsH~~~~--------------~~~~~d~v~~ 216 (269)
T PRK11831 159 ALEPDLIMFDEPF--VG-----QDP-ITMGVLVKLISELNSALGVTCVVVSHDVPE--------------VLSIADHAYI 216 (269)
T ss_pred hcCCCEEEEcCCC--cc-----CCH-HHHHHHHHHHHHHHHhcCcEEEEEecCHHH--------------HHHhhCEEEE
Confidence 3467899999983 11 122 445678889999998889999999996442 4566888888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 217 l~~ 219 (269)
T PRK11831 217 VAD 219 (269)
T ss_pred EEC
Confidence 854
No 201
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=61.34 E-value=47 Score=30.63 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|. .-.+-+++++|+-.- + .| ...+..+.+.|+.++++ ++.|++++|....
T Consensus 146 rv~lara--L~~~p~llllDEPt~--~-----LD-~~~~~~l~~~l~~~~~~-g~tili~tH~~~~-------------- 200 (274)
T PRK13647 146 RVAIAGV--LAMDPDVIVLDEPMA--Y-----LD-PRGQETLMEILDRLHNQ-GKTVIVATHDVDL-------------- 200 (274)
T ss_pred HHHHHHH--HHcCCCEEEEECCCc--C-----CC-HHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------------
Confidence 3344443 345679999999842 1 12 13456788888888876 9999999996542
Q ss_pred ccccCccEEEEEcc
Q psy4520 194 ATQESDNVLIIQQK 207 (291)
Q Consensus 194 IeQdAD~Vi~L~R~ 207 (291)
+.+-||.|++++..
T Consensus 201 ~~~~~d~i~~l~~G 214 (274)
T PRK13647 201 AAEWADQVIVLKEG 214 (274)
T ss_pred HHHhCCEEEEEECC
Confidence 44679999999653
No 202
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=61.28 E-value=46 Score=33.71 Aligned_cols=69 Identities=13% Similarity=0.246 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++. .-.+-+++|+|+-.- + -| ...+..+...|+.++++.++.|++++|....
T Consensus 433 rv~la~a--l~~~p~llllDEPt~--~-----LD-~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~-------------- 488 (529)
T PRK15134 433 RIAIARA--LILKPSLIILDEPTS--S-----LD-KTVQAQILALLKSLQQKHQLAYLFISHDLHV-------------- 488 (529)
T ss_pred HHHHHHH--HhCCCCEEEeeCCcc--c-----cC-HHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH--------------
Confidence 3344443 346789999999831 1 12 2445678899999999899999999995442
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|++++.
T Consensus 489 ~~~~~d~i~~l~~ 501 (529)
T PRK15134 489 VRALCHQVIVLRQ 501 (529)
T ss_pred HHHhcCeEEEEEC
Confidence 4456899999963
No 203
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=61.27 E-value=37 Score=30.72 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=47.7
Q ss_pred HHHHHHHHHHH-----hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccc
Q psy4520 113 LVMEAVEHAMY-----VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNS 187 (291)
Q Consensus 113 ~i~~~~r~~~~-----~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsD 187 (291)
..+..++.+.. +.+-+++++|+-. .+ .|. .....+.+.|+.++++ +..|++++|....
T Consensus 133 qrv~la~al~~~~~~~~p~p~llllDEPt--~~-----LD~-~~~~~l~~~L~~~~~~-~~tvi~~sH~~~~-------- 195 (248)
T PRK03695 133 QRVRLAAVVLQVWPDINPAGQLLLLDEPM--NS-----LDV-AQQAALDRLLSELCQQ-GIAVVMSSHDLNH-------- 195 (248)
T ss_pred HHHHHHHHHhccccccCCCCCEEEEcCCc--cc-----CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCHHH--------
Confidence 34444555443 1256999999983 21 122 3356688888888765 8999999996543
Q ss_pred ccccccccccCccEEEEEcc
Q psy4520 188 VFGSAKATQESDNVLIIQQK 207 (291)
Q Consensus 188 LrgSg~IeQdAD~Vi~L~R~ 207 (291)
+..-||.|+++.+-
T Consensus 196 ------~~~~~d~i~~l~~G 209 (248)
T PRK03695 196 ------TLRHADRVWLLKQG 209 (248)
T ss_pred ------HHHhCCEEEEEECC
Confidence 45668999988753
No 204
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=61.12 E-value=54 Score=28.95 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHh--------CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 112 KLVMEAVEHAMYV--------YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 112 ~~i~~~~r~~~~~--------~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
...++.++.++.+ .+.+++++|+-. .+ .|. .....+.+.|+.++++ +..|++++|...
T Consensus 129 ~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~--~~-----lD~-~~~~~~~~~l~~~~~~-~~tii~itH~~~ 194 (213)
T cd03279 129 TFLASLSLALALSEVLQNRGGARLEALFIDEGF--GT-----LDP-EALEAVATALELIRTE-NRMVGVISHVEE 194 (213)
T ss_pred HHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHhC-CCEEEEEECchH
Confidence 4455566665542 356899999983 11 121 3345577778888665 889999999554
No 205
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=61.01 E-value=48 Score=28.00 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhC--CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccC
Q psy4520 111 LKLVMEAVEHAMYVY--DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 111 i~~i~~~~r~~~~~~--gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR 177 (291)
..++...++.+.... +-+++++|+.. .+. | ......+.+.|+.+.++ ++.+++++|..
T Consensus 82 ~~~~~~la~~L~~~~~~~~~llllDEp~--~gl-----d-~~~~~~l~~~l~~~~~~-~~~vii~TH~~ 141 (162)
T cd03227 82 EKELSALALILALASLKPRPLYILDEID--RGL-----D-PRDGQALAEAILEHLVK-GAQVIVITHLP 141 (162)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCC--CCC-----C-HHHHHHHHHHHHHHHhc-CCEEEEEcCCH
Confidence 456666666665433 67999999993 111 1 12234577778777777 89999999943
No 206
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=61.00 E-value=55 Score=28.94 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=45.0
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|.-.. +.+-||.|+
T Consensus 146 l~~~p~illlDEPt--~~-----LD~-~~~~~l~~~l~~~~~~~~~tii~~sH~~~~--------------~~~~~d~v~ 203 (230)
T TIGR03410 146 LVTRPKLLLLDEPT--EG-----IQP-SIIKDIGRVIRRLRAEGGMAILLVEQYLDF--------------ARELADRYY 203 (230)
T ss_pred HhcCCCEEEecCCc--cc-----CCH-HHHHHHHHHHHHHHHcCCcEEEEEeCCHHH--------------HHHhCCEEE
Confidence 34567999999983 21 121 334568888888888889999999995432 556788898
Q ss_pred EEEcc
Q psy4520 203 IIQQK 207 (291)
Q Consensus 203 ~L~R~ 207 (291)
++.+.
T Consensus 204 ~l~~g 208 (230)
T TIGR03410 204 VMERG 208 (230)
T ss_pred EEECC
Confidence 88653
No 207
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=61.00 E-value=48 Score=30.26 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+ .| ......+.+.|+.++++.+..|++++|....
T Consensus 151 rv~laral--~~~p~llllDEPt--~g-----LD-~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~-------------- 206 (265)
T PRK10253 151 RAWIAMVL--AQETAIMLLDEPT--TW-----LD-ISHQIDLLELLSELNREKGYTLAAVLHDLNQ-------------- 206 (265)
T ss_pred HHHHHHHH--hcCCCEEEEeCcc--cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------------
Confidence 33444443 3567999999983 11 12 2445678888999988889999999996553
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 207 ~~~~~d~i~~l~~ 219 (265)
T PRK10253 207 ACRYASHLIALRE 219 (265)
T ss_pred HHHhCCEEEEEEC
Confidence 5567888888864
No 208
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=60.99 E-value=87 Score=27.54 Aligned_cols=68 Identities=15% Similarity=0.278 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-++++.|+-. .+ .|. ..+..+...|+.++++.++.|++++|...
T Consensus 149 rv~laral--~~~p~illlDEP~--~~-----LD~-~~~~~l~~~l~~~~~~~~~tii~~sh~~~--------------- 203 (220)
T TIGR02982 149 RVAIARAL--VHRPKLVLADEPT--AA-----LDS-KSGRDVVELMQKLAREQGCTILIVTHDNR--------------- 203 (220)
T ss_pred HHHHHHHH--hcCCCEEEEeCCC--Cc-----CCH-HHHHHHHHHHHHHHHHcCCEEEEEeCCHH---------------
Confidence 33444433 3456999999983 21 122 44567899999999888999999999643
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+..-||.|+.++.
T Consensus 204 ~~~~~d~v~~l~~ 216 (220)
T TIGR02982 204 ILDVADRIVHMED 216 (220)
T ss_pred HHhhCCEEEEEEC
Confidence 2245788888753
No 209
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=60.38 E-value=68 Score=31.26 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
+..+.+|.+ -.+-+++++|+-. .+ .|. .....+...|+.++++.+..|++++|...
T Consensus 140 QRvaLAraL--~~~P~lLLLDEPt--s~-----LD~-~~~~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 140 QRVAIGRTL--VAEPSVFLLDEPL--SN-----LDA-ALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred HHHHHHHHH--hcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 344555554 3567999999983 11 122 33466888899999999999999999543
No 210
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.26 E-value=77 Score=29.12 Aligned_cols=60 Identities=17% Similarity=0.334 Sum_probs=42.7
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-..-+++++|+-. .+ .|. .....+.+.|+.++++ +..|++++|.... +.+-||.|++
T Consensus 161 ~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~l~~~~~~-~~tiiivsH~~~~--------------~~~~~d~i~~ 217 (280)
T PRK13649 161 AMEPKILVLDEPT--AG-----LDP-KGRKELMTLFKKLHQS-GMTIVLVTHLMDD--------------VANYADFVYV 217 (280)
T ss_pred HcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHHC-CCEEEEEeccHHH--------------HHHhCCEEEE
Confidence 3467999999983 11 122 3356688888888765 8999999996432 5567899999
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
|..
T Consensus 218 l~~ 220 (280)
T PRK13649 218 LEK 220 (280)
T ss_pred EEC
Confidence 864
No 211
>cd03599 CLECT_DGCR2_like C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS). CLECT_DGCR2_like: C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DGS is also known velo-cardio-facial syndrome (VCFS). DGS is a genetic abnormality that results in malformations of the heart, face, and limbs and is associated with schizophrenia and depressive disorders. DGCR2 is a candidate for involvement in the pathogenesis of DGS since the DGCR2 gene lies within the minimal DGS critical region (MDGRC) of 22q11, which when deleted gives rise to DGS, and the DGCR2 gene is in close proximity to the balanced translocation breakpoint in a DGS patient having a balanced translocation.
Probab=60.01 E-value=7.7 Score=33.51 Aligned_cols=43 Identities=30% Similarity=0.512 Sum_probs=33.9
Q ss_pred eeec--eEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccce
Q psy4520 239 TYNG--KCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282 (291)
Q Consensus 239 ~f~g--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
.|+| .|+++++. ..++.|+.+||.+.||.|+--.+.+-+-||.
T Consensus 7 ~~~~~~~CYk~~~~-~~tw~dA~~~C~~~Gg~Lasi~s~~e~~fl~ 51 (153)
T cd03599 7 HYEGTASCYKVYLS-GENYWDAVQTCQKVNGSLATFTTDQELQFIL 51 (153)
T ss_pred ccCCCCeEEEEeCC-cCCHHHHHHHHHHcCCEEcCCCCHHHHHHHH
Confidence 4566 78888865 6899999999999999999776666555543
No 212
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=59.51 E-value=78 Score=29.38 Aligned_cols=69 Identities=20% Similarity=0.344 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -.+-+++|+|+-. .+ .| ...+..+.+.|+.++++ +..|++++|....
T Consensus 153 rl~laral--~~~p~lLlLDEPt--~g-----LD-~~~~~~l~~~l~~l~~~-g~tvlivsH~~~~-------------- 207 (287)
T PRK13641 153 RVAIAGVM--AYEPEILCLDEPA--AG-----LD-PEGRKEMMQLFKDYQKA-GHTVILVTHNMDD-------------- 207 (287)
T ss_pred HHHHHHHH--HcCCCEEEEECCC--CC-----CC-HHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH--------------
Confidence 34444443 3467999999983 11 12 24456778888888654 9999999995432
Q ss_pred ccccCccEEEEEcc
Q psy4520 194 ATQESDNVLIIQQK 207 (291)
Q Consensus 194 IeQdAD~Vi~L~R~ 207 (291)
+..-||.|++|++-
T Consensus 208 ~~~~~d~v~~l~~G 221 (287)
T PRK13641 208 VAEYADDVLVLEHG 221 (287)
T ss_pred HHHhCCEEEEEECC
Confidence 56779999999753
No 213
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=59.37 E-value=63 Score=29.79 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
.....+|.+. ..-+++++|+-. .+ .| ...+..+.+.|+.++++.+..|++++|....
T Consensus 147 qrv~lAraL~--~~p~llllDEPt--~~-----LD-~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~------------- 203 (277)
T PRK13642 147 QRVAVAGIIA--LRPEIIILDEST--SM-----LD-PTGRQEIMRVIHEIKEKYQLTVLSITHDLDE------------- 203 (277)
T ss_pred HHHHHHHHHH--cCCCEEEEeCCc--cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------------
Confidence 3444455443 345899999983 11 12 1345678899999999999999999996543
Q ss_pred cccccCccEEEEEcc
Q psy4520 193 KATQESDNVLIIQQK 207 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R~ 207 (291)
+.. ||.|++++..
T Consensus 204 -~~~-~d~i~~l~~G 216 (277)
T PRK13642 204 -AAS-SDRILVMKAG 216 (277)
T ss_pred -HHh-CCEEEEEECC
Confidence 343 8999999753
No 214
>PRK11440 putative hydrolase; Provisional
Probab=59.21 E-value=27 Score=30.27 Aligned_cols=48 Identities=21% Similarity=0.034 Sum_probs=31.7
Q ss_pred CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 127 TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.-+||||.-+-...... +......+-.-++.|-..|++.|+||+.+.|
T Consensus 9 ~ALlvID~Qn~f~~~~~-~~~~~~~~i~~i~~l~~~ar~~g~pVi~~~~ 56 (188)
T PRK11440 9 TALVVIDLQEGILPFAG-GPHTADEVVARAARLAAKFRASGSPVVLVRV 56 (188)
T ss_pred EEEEEEecccccccCCC-CcchHHHHHHHHHHHHHHHHHcCCcEEEEec
Confidence 45899998865442111 1122334445567888889999999998875
No 215
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=59.13 E-value=95 Score=28.06 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++|+|+-. .+ .|. .....+.+.|+.++++.+..|++++|.-..
T Consensus 148 rv~laral--~~~p~lLlLDEPt--~~-----LD~-~~~~~l~~~L~~~~~~~g~til~~sH~~~~-------------- 203 (254)
T PRK10418 148 RMMIALAL--LCEAPFIIADEPT--TD-----LDV-VAQARILDLLESIVQKRALGMLLVTHDMGV-------------- 203 (254)
T ss_pred HHHHHHHH--hcCCCEEEEeCCC--cc-----cCH-HHHHHHHHHHHHHHHhcCcEEEEEecCHHH--------------
Confidence 33444443 3567999999983 11 122 345678889999999889999999994332
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 204 ~~~~~d~v~~l~~ 216 (254)
T PRK10418 204 VARLADDVAVMSH 216 (254)
T ss_pred HHHhCCEEEEEEC
Confidence 4456788888853
No 216
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=59.10 E-value=56 Score=31.34 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=46.0
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++|.|+-.- +.| ...+..+.+.|+.++++.+..|++++|.-.. +..-||.|++
T Consensus 177 ~~~P~llilDEPts-------~LD-~~~~~~i~~lL~~l~~~~g~til~iTHdl~~--------------~~~~~Dri~v 234 (330)
T PRK09473 177 LCRPKLLIADEPTT-------ALD-VTVQAQIMTLLNELKREFNTAIIMITHDLGV--------------VAGICDKVLV 234 (330)
T ss_pred HcCCCEEEEeCCCc-------cCC-HHHHHHHHHHHHHHHHHcCCEEEEEECCHHH--------------HHHhCCEEEE
Confidence 35669999999831 112 2456789999999999999999999995432 4556888888
Q ss_pred EEcc
Q psy4520 204 IQQK 207 (291)
Q Consensus 204 L~R~ 207 (291)
++.-
T Consensus 235 m~~G 238 (330)
T PRK09473 235 MYAG 238 (330)
T ss_pred EECC
Confidence 8753
No 217
>PRK08727 hypothetical protein; Validated
Probab=59.09 E-value=94 Score=28.04 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=27.7
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
..+++||||+++.+.+.. ..+..+.. +-.-.++.+.+|++.+.
T Consensus 92 ~~~dlLiIDDi~~l~~~~-------~~~~~lf~-l~n~~~~~~~~vI~ts~ 134 (233)
T PRK08727 92 EGRSLVALDGLESIAGQR-------EDEVALFD-FHNRARAAGITLLYTAR 134 (233)
T ss_pred hcCCEEEEeCcccccCCh-------HHHHHHHH-HHHHHHHcCCeEEEECC
Confidence 457899999998654321 12334444 44444677899998887
No 218
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=58.84 E-value=23 Score=34.95 Aligned_cols=63 Identities=11% Similarity=0.006 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
.+.++|++..+. +..+|+.+-+|..+..+....-...++.++++...+.|+.+|+ .||+|+.-
T Consensus 42 W~~e~i~~~k~~-ie~~GL~~~vIEsvpv~e~IklG~~~RD~~Ieny~~~Irnlg~-~GI~vvcY 104 (351)
T PF03786_consen 42 WDYEEIRALKER-IEAAGLTLSVIESVPVHEDIKLGLPGRDEEIENYKQTIRNLGK-AGIKVVCY 104 (351)
T ss_dssp --HHHHHHHHHH-HHCTT-EEEEEES----HHHHCT-TTHHHHHHHHHHHHHHHHH-TT--EEEE
T ss_pred CCHHHHHHHHHH-HHHcCCeEEEEecCChHHHHhcCCCcHHHHHHHHHHHHHHHHh-cCCCEEEE
Confidence 567777665554 6899999999999865432211235788999999999999995 79999866
No 219
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=58.68 E-value=53 Score=30.42 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -..-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|....
T Consensus 158 rv~laral--~~~p~lLlLDEPt--~~-----LD~-~~~~~l~~~l~~~~~~~~~tiiiisH~~~~-------------- 213 (289)
T PRK13645 158 RVALAGII--AMDGNTLVLDEPT--GG-----LDP-KGEEDFINLFERLNKEYKKRIIMVTHNMDQ-------------- 213 (289)
T ss_pred HHHHHHHH--HhCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------------
Confidence 33444443 3467899999983 11 122 334668888899998889999999995332
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 214 ~~~~~d~i~~l~~ 226 (289)
T PRK13645 214 VLRIADEVIVMHE 226 (289)
T ss_pred HHHhCCEEEEEEC
Confidence 4567899999864
No 220
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=58.64 E-value=34 Score=28.37 Aligned_cols=50 Identities=12% Similarity=-0.079 Sum_probs=31.5
Q ss_pred EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 129 HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 129 lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
+||||.=+-..............+-.-+..|-..|+++++||+.+.|..+
T Consensus 2 LliID~Q~~f~~~~~~~~~~~~~~~~~i~~l~~~ar~~~~~vi~~~~~~~ 51 (161)
T cd00431 2 LLVVDMQNDFVPGGGLLLPGADELVPNINRLLAAARAAGIPVIFTRDWHP 51 (161)
T ss_pred EEEEECcccCcCCCCCcCccHHHHHHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 68899876444322111122344455566777779999999999988433
No 221
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=58.55 E-value=55 Score=29.15 Aligned_cols=60 Identities=20% Similarity=0.278 Sum_probs=42.4
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++|+|+-. .+ .|. ..+..+.+.|+.++++ +..|++++|.... +..-||.|++
T Consensus 158 ~~~p~llllDEP~--~g-----LD~-~~~~~~~~~l~~~~~~-~~tiii~sH~~~~--------------~~~~~d~i~~ 214 (224)
T cd03220 158 ALEPDILLIDEVL--AV-----GDA-AFQEKCQRRLRELLKQ-GKTVILVSHDPSS--------------IKRLCDRALV 214 (224)
T ss_pred hcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHhC-CCEEEEEeCCHHH--------------HHHhCCEEEE
Confidence 3567999999983 11 121 3356688888888876 8899999996542 4456788888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 215 l~~ 217 (224)
T cd03220 215 LEK 217 (224)
T ss_pred EEC
Confidence 853
No 222
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=58.48 E-value=76 Score=26.79 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGS 191 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgS 191 (291)
...+..+|.+ -.+-+++++|+-. .+ .| ......+...|+.++++ +..|++++|....
T Consensus 88 ~qrl~laral--~~~p~illlDEP~--~~-----LD-~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~------------ 144 (163)
T cd03216 88 RQMVEIARAL--ARNARLLILDEPT--AA-----LT-PAEVERLFKVIRRLRAQ-GVAVIFISHRLDE------------ 144 (163)
T ss_pred HHHHHHHHHH--hcCCCEEEEECCC--cC-----CC-HHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH------------
Confidence 3344445544 4567999999983 11 12 13345678888888755 8999999996542
Q ss_pred ccccccCccEEEEEc
Q psy4520 192 AKATQESDNVLIIQQ 206 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R 206 (291)
+.+.||.++++..
T Consensus 145 --~~~~~d~~~~l~~ 157 (163)
T cd03216 145 --VFEIADRVTVLRD 157 (163)
T ss_pred --HHHhCCEEEEEEC
Confidence 4556788888753
No 223
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=58.12 E-value=57 Score=30.22 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=46.0
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-..-+++|+|+-. .+ .| ...+..+.+.|+.++++.+..|++++|.-.. +.+.||.|+
T Consensus 156 L~~~p~lLilDEPt--~g-----LD-~~~~~~l~~~l~~l~~~~g~tillvsH~~~~--------------~~~~~dri~ 213 (283)
T PRK13636 156 LVMEPKVLVLDEPT--AG-----LD-PMGVSEIMKLLVEMQKELGLTIIIATHDIDI--------------VPLYCDNVF 213 (283)
T ss_pred HHcCCCEEEEeCCc--cC-----CC-HHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--------------HHHhCCEEE
Confidence 34567999999983 21 12 2445678888999999889999999995432 456789999
Q ss_pred EEEcc
Q psy4520 203 IIQQK 207 (291)
Q Consensus 203 ~L~R~ 207 (291)
++...
T Consensus 214 ~l~~G 218 (283)
T PRK13636 214 VMKEG 218 (283)
T ss_pred EEECC
Confidence 99653
No 224
>smart00034 CLECT C-type lectin (CTL) or carbohydrate-recognition domain (CRD). Many of these domains function as calcium-dependent carbohydrate binding modules.
Probab=57.98 E-value=7.8 Score=29.72 Aligned_cols=41 Identities=37% Similarity=0.687 Sum_probs=33.7
Q ss_pred eeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 240 f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
|.+.++++++ ...+|.++.++|.+.||.++.-.|++-+-||
T Consensus 8 ~~~~Cy~~~~-~~~~~~~A~~~C~~~~~~La~i~~~~e~~~i 48 (126)
T smart00034 8 YGGKCYKFST-EKKTWADAQAFCQSLGAHLASIHSEAENDFV 48 (126)
T ss_pred hCCEEEEEEC-CccCHHHHHHHHHhcCCEEcccCCHHHHHHH
Confidence 4678888887 4599999999999999999998887655554
No 225
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=57.63 E-value=50 Score=30.63 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=44.4
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLII 204 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L 204 (291)
.+-+++++|+-. .+ .| ......+...|++++++.+..|++++|.... +..-||.+++|
T Consensus 171 ~~p~lllLDEPt--~~-----LD-~~~~~~l~~~l~~~~~~~~~tviiisH~~~~--------------~~~~~d~i~~l 228 (272)
T PRK13547 171 QPPRYLLLDEPT--AA-----LD-LAHQHRLLDTVRRLARDWNLGVLAIVHDPNL--------------AARHADRIAML 228 (272)
T ss_pred CCCCEEEEcCcc--cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEECCHHH--------------HHHhCCEEEEE
Confidence 467999999983 21 12 1345668888888888889999999995432 45678899888
Q ss_pred Ecc
Q psy4520 205 QQK 207 (291)
Q Consensus 205 ~R~ 207 (291)
.+-
T Consensus 229 ~~G 231 (272)
T PRK13547 229 ADG 231 (272)
T ss_pred ECC
Confidence 753
No 226
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=57.05 E-value=59 Score=27.39 Aligned_cols=67 Identities=9% Similarity=-0.108 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccc-----ccCCCCCCccH-HHHHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQF-----MLGLSDSALDR-FYMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLql-----m~~~~~~~~~r-~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
++-.+.++..+..+|+.+.+++.-.. ..... ..... +..=......|...|+++|+.+++..|....
T Consensus 46 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD 118 (185)
T cd01993 46 DESLEVVERLAEELGIELEIVSFKEEYTDDIEVKKR-GGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDD 118 (185)
T ss_pred HHHHHHHHHHHHHcCCceEEEehhhhcchhhhhhcc-CCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHH
Confidence 34456677778999999999876310 01001 11110 0000123457788999999999999996553
No 227
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=57.00 E-value=33 Score=32.64 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCc--EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 115 MEAVEHAMYVYDTG--HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 115 ~~~~r~~~~~~gv~--lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
.++++. ....|++ -||+|+. + +-++ +. +.-=++++.|..| +++++||. +.++||.
T Consensus 166 ~~~i~~-a~~~GI~~~~IilDPG-i--GF~k---~~-~~n~~ll~~l~~l-~~lg~Pil-vg~SRKs 222 (282)
T PRK11613 166 IEQIAR-CEAAGIAKEKLLLDPG-F--GFGK---NL-SHNYQLLARLAEF-HHFNLPLL-VGMSRKS 222 (282)
T ss_pred HHHHHH-HHHcCCChhhEEEeCC-C--CcCC---CH-HHHHHHHHHHHHH-HhCCCCEE-EEecccH
Confidence 344443 4678987 9999996 2 3222 22 2233488889888 57999984 5778887
No 228
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=56.64 E-value=51 Score=29.33 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+. .+-+++++|+-. .+ -| ......+.+.|+.++++ +..|++++|.-. .
T Consensus 145 rl~la~al~--~~p~illlDEPt--~~-----LD-~~~~~~l~~~l~~~~~~-~~tiii~sH~~~--------------~ 199 (237)
T PRK11614 145 MLAIGRALM--SQPRLLLLDEPS--LG-----LA-PIIIQQIFDTIEQLREQ-GMTIFLVEQNAN--------------Q 199 (237)
T ss_pred HHHHHHHHH--hCCCEEEEcCcc--cc-----CC-HHHHHHHHHHHHHHHHC-CCEEEEEeCcHH--------------H
Confidence 344444443 466999999983 21 12 23456678888888765 899999999532 2
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.++++..
T Consensus 200 ~~~~~d~i~~l~~ 212 (237)
T PRK11614 200 ALKLADRGYVLEN 212 (237)
T ss_pred HHhhCCEEEEEeC
Confidence 5567899988864
No 229
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=56.61 E-value=1e+02 Score=31.11 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=37.2
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNV 135 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyL 135 (291)
+.+.++..+=.+-.+|..+-+.. .++++++++. +...|-..++||++
T Consensus 211 ~~i~~aeaeTGekk~y~~NITa~--~~EM~rrae~-a~elG~~~~midi~ 257 (429)
T COG1850 211 EAIDKAEAETGEKKMYAVNITAP--CEEMMRRAEL-AAELGANYVMIDIV 257 (429)
T ss_pred HHHHHHHHhhCceEEEEeeccCC--HHHHHHHHHH-HHHcCCCEEEEEEE
Confidence 45556666667778999887663 8999999987 57788899999998
No 230
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=56.54 E-value=9.3 Score=37.12 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 111 LKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
..+..+..|.+ --.-+++..|+= + .+.. ..| -.+|+--|.++++|.+|||+-|+|+=.+
T Consensus 133 EkQRVAIGRAL--Lt~P~LLLmDEP-L-aSLD---~~R---K~EilpylERL~~e~~IPIlYVSHS~~E 191 (352)
T COG4148 133 EKQRVAIGRAL--LTAPELLLMDEP-L-ASLD---LPR---KREILPYLERLRDEINIPILYVSHSLDE 191 (352)
T ss_pred hhhHHHHHHHH--hcCCCeeeecCc-h-hhcc---cch---hhHHHHHHHHHHHhcCCCEEEEecCHHH
Confidence 34445555543 233467777765 2 1111 122 2568999999999999999999996443
No 231
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=56.50 E-value=94 Score=31.39 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
....++.+ -.+-+++++|+-. .+ -|. .....+.+.|+.++++ +..|++++|...
T Consensus 148 rv~la~aL--~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~l~~~~~~-g~tiiivtHd~~ 201 (510)
T PRK15439 148 IVEILRGL--MRDSRILILDEPT--AS-----LTP-AETERLFSRIRELLAQ-GVGIVFISHKLP 201 (510)
T ss_pred HHHHHHHH--HcCCCEEEEECCC--CC-----CCH-HHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 33444443 4578999999983 11 121 3356678888888765 899999999543
No 232
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=56.50 E-value=52 Score=32.29 Aligned_cols=57 Identities=12% Similarity=0.250 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
.+..+.+|.++. .-+++++|+- + .+ .|. .....+...|++++++++++|++|+|...
T Consensus 150 ~QRVaLARaL~~--~P~llLLDEP-~-s~-----LD~-~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ 206 (375)
T PRK09452 150 QQRVAIARAVVN--KPKVLLLDES-L-SA-----LDY-KLRKQMQNELKALQRKLGITFVFVTHDQE 206 (375)
T ss_pred HHHHHHHHHHhc--CCCEEEEeCC-C-Cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 344555565543 4689999988 2 21 222 33466899999999999999999999543
No 233
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=56.28 E-value=44 Score=36.59 Aligned_cols=144 Identities=14% Similarity=0.145 Sum_probs=77.9
Q ss_pred HHHHHHcCCeEEEEeccCCHH------HHHHHHHHHHhc-----CCCccc-ccccc---chhhhhccccccccccCCCCc
Q psy4520 5 SLDLALQGVTTLWGSFEVQNK------RLARIMLQQLVR-----KPLLDN-LDKFD---EYSDWFKTLPMYFLTFHGPQP 69 (291)
Q Consensus 5 al~la~qG~~v~~fSlEM~~~------ql~~Rml~~~a~-----~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~g~~~ 69 (291)
|+++++.|.+|.+-+.==|.+ .+++.++.+-.. -|..-. .+|.+ .|...+.. +..|..|+|.++
T Consensus 78 A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~-~v~~~~y~Gdt~ 156 (851)
T COG1205 78 ALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPG-KVTFGRYTGDTP 156 (851)
T ss_pred HHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCC-cceeeeecCCCC
Confidence 677888999999887766654 444555544333 122111 13322 23333333 489999999988
Q ss_pred hhHHHHHhhccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHH
Q psy4520 70 LKLVMELVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRF 149 (291)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~ 149 (291)
-.+-+...+.| |=.+...+......-++..-+....-..++.||||++-.-.+..+
T Consensus 157 ~~~r~~~~~~p------------------p~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~G------ 212 (851)
T COG1205 157 PEERRAIIRNP------------------PDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQG------ 212 (851)
T ss_pred hHHHHHHHhCC------------------CCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccch------
Confidence 55544333322 222222222111111222222222223399999999943333221
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 150 YMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 150 ~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
..+.-++|.|+.+++-.|-+-.++
T Consensus 213 S~vA~llRRL~~~~~~~~~~~q~i 236 (851)
T COG1205 213 SEVALLLRRLLRRLRRYGSPLQII 236 (851)
T ss_pred hHHHHHHHHHHHHHhccCCCceEE
Confidence 336779999999999988554444
No 234
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=56.24 E-value=83 Score=31.63 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
.....+|.+ -.+-+++|+|+-. .+ .|. ..+..+.+.|+.++++ +..|++++|....
T Consensus 416 qrv~lAral--~~~p~lLlLDEPt--~~-----LD~-~~~~~l~~~l~~l~~~-g~tvi~vsHd~~~------------- 471 (510)
T PRK09700 416 QKVLISKWL--CCCPEVIIFDEPT--RG-----IDV-GAKAEIYKVMRQLADD-GKVILMVSSELPE------------- 471 (510)
T ss_pred HHHHHHHHH--hcCCCEEEECCCC--CC-----cCH-HHHHHHHHHHHHHHHC-CCEEEEEcCCHHH-------------
Confidence 344445544 3567999999983 11 121 3456678888888865 8999999996442
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+.+-||.|++++.
T Consensus 472 -~~~~~d~i~~l~~ 484 (510)
T PRK09700 472 -IITVCDRIAVFCE 484 (510)
T ss_pred -HHhhCCEEEEEEC
Confidence 5678899999964
No 235
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=56.21 E-value=1.1e+02 Score=28.23 Aligned_cols=79 Identities=10% Similarity=0.013 Sum_probs=49.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCc
Q psy4520 105 FHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLT 184 (291)
Q Consensus 105 ~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~ 184 (291)
..+..|--+....+=....-.+-+++++|+-. .+ .| ......+.+.|+.++ +.+..|++++|....
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt--~g-----LD-~~~~~~l~~~L~~~~-~~g~tiIiisH~~~~----- 205 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEAL--SV-----GD-QTFAQKCLDKIYEFK-EQNKTIFFVSHNLGQ----- 205 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCcc--cc-----CC-HHHHHHHHHHHHHHH-HCCCEEEEEcCCHHH-----
Confidence 33344555544333222334567999999983 11 12 133456778888885 469999999996543
Q ss_pred cccccccccccccCccEEEEEc
Q psy4520 185 VNSVFGSAKATQESDNVLIIQQ 206 (291)
Q Consensus 185 lsDLrgSg~IeQdAD~Vi~L~R 206 (291)
+.+-||.|++++.
T Consensus 206 ---------i~~~~d~i~~l~~ 218 (264)
T PRK13546 206 ---------VRQFCTKIAWIEG 218 (264)
T ss_pred ---------HHHHcCEEEEEEC
Confidence 4566788888754
No 236
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=56.17 E-value=68 Score=27.89 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=40.5
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .|. .....+.+.|+.++++ ++.|++++|.... +.+-||.+++
T Consensus 144 ~~~p~~lllDEP~--~~-----LD~-~~~~~~~~~l~~~~~~-~~tii~~sH~~~~--------------~~~~~d~i~~ 200 (210)
T cd03269 144 IHDPELLILDEPF--SG-----LDP-VNVELLKDVIRELARA-GKTVILSTHQMEL--------------VEELCDRVLL 200 (210)
T ss_pred hcCCCEEEEeCCC--cC-----CCH-HHHHHHHHHHHHHHHC-CCEEEEECCCHHH--------------HHHhhhEEEE
Confidence 3466899999983 11 121 3345678888888765 8999999995432 4456788877
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 201 l~~ 203 (210)
T cd03269 201 LNK 203 (210)
T ss_pred EeC
Confidence 753
No 237
>PLN03140 ABC transporter G family member; Provisional
Probab=56.16 E-value=1.2e+02 Score=35.46 Aligned_cols=61 Identities=20% Similarity=0.330 Sum_probs=44.1
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec-cCCcCCCCccccccccccccccCccE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRKENEQLTVNSVFGSAKATQESDNV 201 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk~ek~p~lsDLrgSg~IeQdAD~V 201 (291)
.-.+-+++++|+-. .+ .|. .....+++.|+++|++ +..|+++.| |+. .+.+.+|.+
T Consensus 1034 L~~~P~lL~LDEPT--sg-----LD~-~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~--------------~i~~~~D~v 1090 (1470)
T PLN03140 1034 LVANPSIIFMDEPT--SG-----LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQPSI--------------DIFEAFDEL 1090 (1470)
T ss_pred HhhCCCEEEEeCCC--CC-----CCH-HHHHHHHHHHHHHHHC-CCEEEEEeCCCCH--------------HHHHhCCEE
Confidence 34567889999983 21 222 3456789999999876 889999999 532 255778999
Q ss_pred EEEEc
Q psy4520 202 LIIQQ 206 (291)
Q Consensus 202 i~L~R 206 (291)
++|.+
T Consensus 1091 llL~~ 1095 (1470)
T PLN03140 1091 LLMKR 1095 (1470)
T ss_pred EEEcC
Confidence 99975
No 238
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=56.14 E-value=99 Score=27.50 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=41.3
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .|. ..+..+...|+.+++ +..|++++|.-.. +.+-||.|+
T Consensus 158 l~~~p~~lllDEPt--~~-----LD~-~~~~~l~~~l~~~~~--~~tii~~sH~~~~--------------~~~~~d~i~ 213 (242)
T TIGR03411 158 LMQDPKLLLLDEPV--AG-----MTD-EETEKTAELLKSLAG--KHSVVVVEHDMEF--------------VRSIADKVT 213 (242)
T ss_pred HhcCCCEEEecCCc--cC-----CCH-HHHHHHHHHHHHHhc--CCEEEEEECCHHH--------------HHHhCCEEE
Confidence 34567999999983 21 121 334667788888866 5899999995432 456789998
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
+|..
T Consensus 214 ~l~~ 217 (242)
T TIGR03411 214 VLHQ 217 (242)
T ss_pred EEEC
Confidence 8865
No 239
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=55.63 E-value=77 Score=28.84 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+ .| ......+.+.|+.++++.+..|++++|....
T Consensus 158 rv~laral--~~~p~vllLDEP~--~~-----LD-~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~-------------- 213 (261)
T PRK14258 158 RLCIARAL--AVKPKVLLMDEPC--FG-----LD-PIASMKVESLIQSLRLRSELTMVIVSHNLHQ-------------- 213 (261)
T ss_pred HHHHHHHH--hcCCCEEEEeCCC--cc-----CC-HHHHHHHHHHHHHHHHhCCCEEEEEECCHHH--------------
Confidence 34444444 3567999999983 21 12 2345678888999988778999999996543
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 214 i~~~~d~i~~l~~ 226 (261)
T PRK14258 214 VSRLSDFTAFFKG 226 (261)
T ss_pred HHHhcCEEEEEcc
Confidence 6678899999964
No 240
>KOG1695|consensus
Probab=55.62 E-value=28 Score=31.71 Aligned_cols=87 Identities=14% Similarity=0.200 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCCccccccccc-hhhhhccccccccccCCCCchhHHHHHhhccchhhhhhHHHHHHhhcCCCeEEEc
Q psy4520 26 RLARIMLQQLVRKPLLDNLDKFDE-YSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLLDNLDKFDEYSDWFKTLPMYFLT 104 (291)
Q Consensus 26 ql~~Rml~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~pl~i~d 104 (291)
-..-|+|-..+|+++...+...++ | ..+.. .--|.++|++=.|
T Consensus 15 ae~iR~lf~~a~v~fEd~r~~~~~~w-----------------------------------~~~K~-~~pfgqlP~l~vD 58 (206)
T KOG1695|consen 15 AEPIRLLFAYAGVSFEDKRITMEDAW-----------------------------------EELKD-KMPFGQLPVLEVD 58 (206)
T ss_pred HHHHHHHHHhcCCCcceeeeccccch-----------------------------------hhhcc-cCCCCCCCEEeEC
Confidence 446799999999999877655555 6 11111 1356788965555
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 105 FHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 105 ~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
| ..+.+-.+.+||+.+++| +.+. ...+...++.++..+|.|=-+
T Consensus 59 --g-~~i~QS~AI~RyLArk~g-----------l~Gk---t~~E~a~vD~i~d~~~D~~~~ 102 (206)
T KOG1695|consen 59 --G-KKLVQSRAILRYLARKFG-----------LAGK---TEEEEAWVDMIVDQFKDFRWE 102 (206)
T ss_pred --C-EeeccHHHHHHHHHHHhC-----------cCCC---CHHHHHHHHHHHHhhhhHHHH
Confidence 3 467888999999999999 2332 234456677788888887666
No 241
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=55.57 E-value=78 Score=28.36 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
.++.+..+.+..-.+-.+|++|+.- .+.. ..+. .+....-++.|++..+++|++++|-..
T Consensus 95 ~e~~~l~~~l~~~~~~~llllDEp~--~gt~--~lD~---~~~~~~il~~l~~~~~~~vi~~TH~~~ 154 (216)
T cd03284 95 VEMVETANILNNATERSLVLLDEIG--RGTS--TYDG---LSIAWAIVEYLHEKIGAKTLFATHYHE 154 (216)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCC--CCCC--hHHH---HHHHHHHHHHHHhccCCcEEEEeCcHH
Confidence 3444444444344567899999982 1111 1122 122233344455556999999999643
No 242
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=55.46 E-value=82 Score=28.79 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=32.8
Q ss_pred CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 126 DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
.--+|+||++- ++.+-.+..+-...-++.|++..+|.+++..|-...
T Consensus 122 ~~sLvliDE~g-------~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l 168 (235)
T PF00488_consen 122 EKSLVLIDELG-------RGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHEL 168 (235)
T ss_dssp TTEEEEEESTT-------TTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGG
T ss_pred cceeeeccccc-------CCCChhHHHHHHHHHHHHHHHhccccEEEEeccchh
Confidence 34599999992 223445556667778888888789999999995544
No 243
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=55.22 E-value=73 Score=32.19 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGS 191 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgS 191 (291)
...+..++.+ -.+.+++|+|+-. .+- | ...+..+.+.|+.++++ +..|++++|....
T Consensus 409 kqrl~la~al--~~~p~lLlLDEPt--~gL-----D-~~~~~~l~~~l~~l~~~-g~tiIivsHd~~~------------ 465 (510)
T PRK15439 409 QQKVLIAKCL--EASPQLLIVDEPT--RGV-----D-VSARNDIYQLIRSIAAQ-NVAVLFISSDLEE------------ 465 (510)
T ss_pred HHHHHHHHHH--hhCCCEEEECCCC--cCc-----C-hhHHHHHHHHHHHHHhC-CCEEEEECCCHHH------------
Confidence 3444455544 3468999999983 211 1 13345677888888775 8999999996553
Q ss_pred ccccccCccEEEEEc
Q psy4520 192 AKATQESDNVLIIQQ 206 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R 206 (291)
+++-||.|++|+.
T Consensus 466 --i~~~~d~i~~l~~ 478 (510)
T PRK15439 466 --IEQMADRVLVMHQ 478 (510)
T ss_pred --HHHhCCEEEEEEC
Confidence 6678999999974
No 244
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=55.21 E-value=23 Score=28.15 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEcc
Q psy4520 154 TIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQK 207 (291)
Q Consensus 154 ~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~ 207 (291)
++++.++. ||++|+||+++..+.. +.+.+.||.++.+...
T Consensus 62 ~~~~~~~~-a~~~g~~vi~iT~~~~-------------s~la~~ad~~l~~~~~ 101 (128)
T cd05014 62 ELLNLLPH-LKRRGAPIIAITGNPN-------------STLAKLSDVVLDLPVE 101 (128)
T ss_pred HHHHHHHH-HHHCCCeEEEEeCCCC-------------CchhhhCCEEEECCCC
Confidence 35555555 8999999999987443 3467789988888643
No 245
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=55.05 E-value=27 Score=29.29 Aligned_cols=46 Identities=15% Similarity=-0.057 Sum_probs=32.0
Q ss_pred EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 129 HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 129 lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+||||.-+-..... ........+-.-+.+|-..|++.++||+.+.+
T Consensus 3 LlvID~Q~~f~~~~-~~~~~~~~~i~~i~~l~~~~r~~~~~Vi~~~~ 48 (174)
T PF00857_consen 3 LLVIDMQNDFINGS-LAPPNAEAIIPNINRLLDAARAAGVPVIHTRD 48 (174)
T ss_dssp EEEES-BHHHHTST-TTSTTHHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEEeChhhhhcCC-ccccCHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 78999885444211 22344555666788888899999999999887
No 246
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=54.98 E-value=86 Score=31.54 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
.....++.+ -.+-+++|+|+-. .+ .|. ..+..+.+.|+.++++ +..|++++|....
T Consensus 412 qrv~lA~al--~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~------------- 467 (506)
T PRK13549 412 QKAVLAKCL--LLNPKILILDEPT--RG-----IDV-GAKYEIYKLINQLVQQ-GVAIIVISSELPE------------- 467 (506)
T ss_pred HHHHHHHHH--hhCCCEEEEcCCC--CC-----cCH-hHHHHHHHHHHHHHHC-CCEEEEECCCHHH-------------
Confidence 344445444 3567999999983 11 121 3456678888888765 9999999996543
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+++-||.|++++.
T Consensus 468 -~~~~~d~v~~l~~ 480 (506)
T PRK13549 468 -VLGLSDRVLVMHE 480 (506)
T ss_pred -HHHhCCEEEEEEC
Confidence 5567899998864
No 247
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=54.96 E-value=92 Score=31.33 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=32.8
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.-.+-+++++|+-.- + -|. ..+..+.+.|+.++++ +..|++++|.
T Consensus 160 l~~~p~lllLDEPt~--~-----LD~-~~~~~l~~~l~~l~~~-g~tiiivsHd 204 (510)
T PRK09700 160 LMLDAKVIIMDEPTS--S-----LTN-KEVDYLFLIMNQLRKE-GTAIVYISHK 204 (510)
T ss_pred HhcCCCEEEEeCCCC--C-----CCH-HHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 345779999999831 1 122 4456788888888776 8999999994
No 248
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=54.71 E-value=1.1e+02 Score=28.38 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=43.1
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-.--. |. .....+.+.|+.++++ +..|++++|.... +..-||.|+
T Consensus 159 L~~~p~illLDEPt~gL-------D~-~~~~~l~~~l~~l~~~-g~til~vtHd~~~--------------~~~~~dri~ 215 (288)
T PRK13643 159 LAMEPEVLVLDEPTAGL-------DP-KARIEMMQLFESIHQS-GQTVVLVTHLMDD--------------VADYADYVY 215 (288)
T ss_pred HHhCCCEEEEECCccCC-------CH-HHHHHHHHHHHHHHHC-CCEEEEEecCHHH--------------HHHhCCEEE
Confidence 34567899999984221 21 3345677788888765 8999999995432 446689999
Q ss_pred EEEcc
Q psy4520 203 IIQQK 207 (291)
Q Consensus 203 ~L~R~ 207 (291)
++...
T Consensus 216 ~l~~G 220 (288)
T PRK13643 216 LLEKG 220 (288)
T ss_pred EEECC
Confidence 99653
No 249
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=54.63 E-value=92 Score=28.14 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=41.9
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .| ...+..+.+.|+.++++ +..|++++|.... +.+.||.|++
T Consensus 154 ~~~p~llllDEP~--~~-----LD-~~~~~~l~~~l~~l~~~-~~tiii~tH~~~~--------------~~~~~d~i~~ 210 (255)
T PRK11231 154 AQDTPVVLLDEPT--TY-----LD-INHQVELMRLMRELNTQ-GKTVVTVLHDLNQ--------------ASRYCDHLVV 210 (255)
T ss_pred hcCCCEEEEcCCc--cc-----CC-HHHHHHHHHHHHHHHHC-CCEEEEEECCHHH--------------HHHhcCEEEE
Confidence 3466999999983 21 12 24456678888888765 8999999995432 4567888888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 211 l~~ 213 (255)
T PRK11231 211 LAN 213 (255)
T ss_pred EEC
Confidence 864
No 250
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=54.58 E-value=84 Score=31.56 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
....++.+ -.+-+++|+|+-.- + -|. .....+.+.|+.++++ +..|++++|.
T Consensus 148 rv~laral--~~~p~lllLDEPt~--~-----LD~-~~~~~l~~~l~~~~~~-g~tiiiitHd 199 (501)
T PRK11288 148 MVEIAKAL--ARNARVIAFDEPTS--S-----LSA-REIEQLFRVIRELRAE-GRVILYVSHR 199 (501)
T ss_pred HHHHHHHH--HhCCCEEEEcCCCC--C-----CCH-HHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 33444443 45779999999842 1 122 3356688888888764 8999999994
No 251
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=54.55 E-value=82 Score=29.29 Aligned_cols=71 Identities=14% Similarity=0.261 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
..+..++.+ -..-+++|+|+-.-- .|. ..+..+.+.|+.++++.+..|++++|.-..
T Consensus 151 qrv~iAraL--~~~P~llllDEPt~g-------LD~-~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~------------- 207 (287)
T PRK13637 151 RRVAIAGVV--AMEPKILILDEPTAG-------LDP-KGRDEILNKIKELHKEYNMTIILVSHSMED------------- 207 (287)
T ss_pred HHHHHHHHH--HcCCCEEEEECCccC-------CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------------
Confidence 344444443 446799999998421 122 445678889999999999999999994321
Q ss_pred cccccCccEEEEEcc
Q psy4520 193 KATQESDNVLIIQQK 207 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R~ 207 (291)
+..-||.|++++.-
T Consensus 208 -~~~~~drv~~l~~G 221 (287)
T PRK13637 208 -VAKLADRIIVMNKG 221 (287)
T ss_pred -HHHhCCEEEEEECC
Confidence 34568999999753
No 252
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=54.49 E-value=99 Score=30.01 Aligned_cols=56 Identities=11% Similarity=0.182 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
...+.+|.++. .-+++++|+-. .+ .|. ....++.+.|+.+.++.+++|++|+|...
T Consensus 143 QRVaLARaL~~--~P~lLLLDEP~--s~-----LD~-~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 198 (351)
T PRK11432 143 QRVALARALIL--KPKVLLFDEPL--SN-----LDA-NLRRSMREKIRELQQQFNITSLYVTHDQS 198 (351)
T ss_pred HHHHHHHHHHc--CCCEEEEcCCc--cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 34455565543 46899999882 21 122 33456888999999999999999999554
No 253
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=54.44 E-value=89 Score=26.49 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccc
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKA 194 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~I 194 (291)
...+|.+ -.+-+++++|+-.- + -| ......+.+.|+.++++ +..|++++|.... +
T Consensus 104 v~laral--~~~p~illlDEPt~--~-----LD-~~~~~~l~~~l~~~~~~-g~tiii~th~~~~--------------~ 158 (173)
T cd03230 104 LALAQAL--LHDPELLILDEPTS--G-----LD-PESRREFWELLRELKKE-GKTILLSSHILEE--------------A 158 (173)
T ss_pred HHHHHHH--HcCCCEEEEeCCcc--C-----CC-HHHHHHHHHHHHHHHHC-CCEEEEECCCHHH--------------H
Confidence 3444443 35679999999842 1 12 23456788889999887 8899999996442 4
Q ss_pred cccCccEEEEEc
Q psy4520 195 TQESDNVLIIQQ 206 (291)
Q Consensus 195 eQdAD~Vi~L~R 206 (291)
.+.||.++.++.
T Consensus 159 ~~~~d~i~~l~~ 170 (173)
T cd03230 159 ERLCDRVAILNN 170 (173)
T ss_pred HHhCCEEEEEeC
Confidence 566788887753
No 254
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=54.43 E-value=71 Score=27.49 Aligned_cols=75 Identities=11% Similarity=-0.053 Sum_probs=39.7
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHH--HHHHHHHhcCceEEEEeccC
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQ--EFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r--~LK~~Ake~~VpVilvshpR 177 (291)
++|+-.-.. .-..-...++..+..+|+.+.+++-=. .... . ...+...+-.| .|.++|+++++.++++.|..
T Consensus 33 ~~vdh~~~~-~s~~~~~~v~~~~~~~~i~~~~~~~~~--~~~~--~-~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 33 VHVDHGLRE-ESDEEAEFVEEICEQLGIPLYIVRIDE--DRKK--G-SNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp EEEE-STSC-CHHHHHHHHHHHHHHTT-EEEEEE--C--HCCT--T-STCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred EEEecCCCc-ccchhHHHHHHHHHhcCCceEEEEeee--eecc--c-CCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 555443332 233334566667789999988876552 1111 1 11233444443 78899999999999999976
Q ss_pred CcC
Q psy4520 178 KEN 180 (291)
Q Consensus 178 k~e 180 (291)
.-.
T Consensus 107 dD~ 109 (182)
T PF01171_consen 107 DDQ 109 (182)
T ss_dssp HHH
T ss_pred Ccc
Confidence 553
No 255
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=54.35 E-value=71 Score=27.63 Aligned_cols=58 Identities=9% Similarity=0.087 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
+...++.+..-.+-.++++|+.. .+ .|......-+..-++.++++.++.|++++|.-.
T Consensus 66 ~~~l~~~l~~~~~~~llllDEp~--~g-----~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~ 123 (185)
T smart00534 66 MKETANILKNATENSLVLLDELG--RG-----TSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE 123 (185)
T ss_pred HHHHHHHHHhCCCCeEEEEecCC--CC-----CCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 33333333332356899999993 11 122112222334455666656899999999443
No 256
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=54.19 E-value=83 Score=31.85 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
.....+|.+ -.+-+++++|+-.-- -|. .....+.+-|++++++.+..|++++|...
T Consensus 163 qrv~iAraL--~~~p~llllDEPt~~-------LD~-~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 218 (529)
T PRK15134 163 QRVMIAMAL--LTRPELLIADEPTTA-------LDV-SVQAQILQLLRELQQELNMGLLFITHNLS 218 (529)
T ss_pred HHHHHHHHH--hcCCCEEEEcCCCCc-------cCH-HHHHHHHHHHHHHHHhcCCeEEEEcCcHH
Confidence 344444443 467899999998421 122 44567888999999888999999999544
No 257
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=53.98 E-value=13 Score=35.33 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=57.5
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec--cC
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH--PR 177 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh--pR 177 (291)
+=|...+.+.+.++.+ .++.++.+||-..|+-..+ .+ +-..+|...+.++..||-+-++-+|+|+| |-
T Consensus 5 IGivTgtvSq~ed~~r-~Ae~l~~~Yg~~~I~h~ty------Pd---nf~~e~EttIskI~~lAdDp~mKaIVv~q~vpG 74 (275)
T PF12683_consen 5 IGIVTGTVSQSEDEYR-GAEELIKKYGDVMIKHVTY------PD---NFMSEQETTISKIVSLADDPDMKAIVVSQAVPG 74 (275)
T ss_dssp EEEEE--TTT-HHHHH-HHHHHHHHHHHHEEEEEE--------T---TGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS--
T ss_pred EEEEeCCcccChHHHH-HHHHHHHHhCcceEEEEeC------CC---cccchHHHHHHHHHHhccCCCccEEEEeCCCcc
Confidence 4455556666777765 5667789999654444333 11 22234677899999999999999999998 43
Q ss_pred CcC-------CCCcccccc-----ccccccccCccEEEE
Q psy4520 178 KEN-------EQLTVNSVF-----GSAKATQESDNVLII 204 (291)
Q Consensus 178 k~e-------k~p~lsDLr-----gSg~IeQdAD~Vi~L 204 (291)
-.+ +||.+-=+. +.+-|.+.||.++-.
T Consensus 75 t~~af~kIkekRpDIl~ia~~~~EDp~~i~~~aDi~~~~ 113 (275)
T PF12683_consen 75 TAEAFRKIKEKRPDILLIAGEPHEDPEVISSAADIVVNP 113 (275)
T ss_dssp -HHHHHHHHHH-TTSEEEESS--S-HHHHHHHSSEEEE-
T ss_pred hHHHHHHHHhcCCCeEEEcCCCcCCHHHHhhccCeEecc
Confidence 333 888663332 456788999988764
No 258
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=53.83 E-value=1.1e+02 Score=26.23 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccC
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR 177 (291)
+..+|.+ -.+-+++++|+-. .+ .| ...+..+.+.|+.++++ +..|++++|..
T Consensus 136 v~laral--~~~p~llllDEPt--~~-----LD-~~~~~~~~~~l~~~~~~-~~tili~sH~~ 187 (190)
T TIGR01166 136 VAIAGAV--AMRPDVLLLDEPT--AG-----LD-PAGREQMLAILRRLRAE-GMTVVISTHDV 187 (190)
T ss_pred HHHHHHH--hcCCCEEEEcCCc--cc-----CC-HHHHHHHHHHHHHHHHc-CCEEEEEeecc
Confidence 3344443 3567899999983 11 12 24456788888888765 89999999954
No 259
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=53.72 E-value=39 Score=29.91 Aligned_cols=47 Identities=9% Similarity=-0.022 Sum_probs=29.0
Q ss_pred cEEEEeccccccCCCCCC-ccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 128 GHVIIDNVQFMLGLSDSA-LDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 128 ~lviIDyLqlm~~~~~~~-~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
-+||||.-+-....+... .+....+. -+..|-..|++.++||+.+.|
T Consensus 4 ALlvID~Qndf~~~g~l~~~~~~~~v~-~i~~l~~~ar~~g~pVi~~~~ 51 (212)
T PRK11609 4 ALLLVDLQNDFCAGGALAVPEGDSTID-VANRLIDWCQSRGIPVIASQD 51 (212)
T ss_pred EEEEEeCCccCCCCCccccCCHHHHHH-HHHHHHHHHHhcCCeEEEEec
Confidence 589999987444222111 12223333 346666689999999998876
No 260
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=53.60 E-value=83 Score=31.62 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=44.0
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++|+|+-. .+ .| ...+..+.+.|+.++++ +..|++++|.... ++.-||.++
T Consensus 411 l~~~p~lllLDEPt--~~-----LD-~~~~~~l~~~l~~l~~~-g~tviivsHd~~~--------------~~~~~d~i~ 467 (501)
T PRK11288 411 LSEDMKVILLDEPT--RG-----ID-VGAKHEIYNVIYELAAQ-GVAVLFVSSDLPE--------------VLGVADRIV 467 (501)
T ss_pred HccCCCEEEEcCCC--CC-----CC-HhHHHHHHHHHHHHHhC-CCEEEEECCCHHH--------------HHhhCCEEE
Confidence 34678999999983 11 12 23456677888888765 9999999996653 567789999
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++.+
T Consensus 468 ~l~~ 471 (501)
T PRK11288 468 VMRE 471 (501)
T ss_pred EEEC
Confidence 8864
No 261
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=53.41 E-value=1.1e+02 Score=28.12 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
.+..+|.+ -.+-+++++|+-. .+- |. .....+.+.|+.++++ +..|++++|...
T Consensus 150 rv~laraL--~~~p~llllDEPt--~~L-----D~-~~~~~l~~~L~~~~~~-g~tviivsH~~~ 203 (272)
T PRK15056 150 RVFLARAI--AQQGQVILLDEPF--TGV-----DV-KTEARIISLLRELRDE-GKTMLVSTHNLG 203 (272)
T ss_pred HHHHHHHH--hcCCCEEEEeCCC--ccC-----CH-HHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 34444443 3567999999983 211 21 3345577778888765 889999999654
No 262
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=53.39 E-value=93 Score=29.11 Aligned_cols=61 Identities=23% Similarity=0.360 Sum_probs=42.1
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .|. .....+.+.|+.++++ +..|++++|.... +++-||.|+
T Consensus 150 l~~~p~lllLDEPt--~g-----LD~-~~~~~l~~~l~~~~~~-g~til~~sH~~~~--------------~~~~~d~i~ 206 (303)
T TIGR01288 150 LINDPQLLILDEPT--TG-----LDP-HARHLIWERLRSLLAR-GKTILLTTHFMEE--------------AERLCDRLC 206 (303)
T ss_pred HhcCCCEEEEeCCC--cC-----CCH-HHHHHHHHHHHHHHhC-CCEEEEECCCHHH--------------HHHhCCEEE
Confidence 34677999999983 21 122 3456688888888764 8999999996442 455677777
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 207 ~l~~ 210 (303)
T TIGR01288 207 VLES 210 (303)
T ss_pred EEEC
Confidence 7754
No 263
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=53.34 E-value=1e+02 Score=30.81 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
.....++.+. .+-+++++|+-. .+ -|. .....+.+.|+.+++ .+..|++++|...
T Consensus 148 qrv~iA~al~--~~p~lllLDEPt--~~-----LD~-~~~~~l~~~l~~l~~-~g~tviiitHd~~ 202 (500)
T TIGR02633 148 QLVEIAKALN--KQARLLILDEPS--SS-----LTE-KETEILLDIIRDLKA-HGVACVYISHKLN 202 (500)
T ss_pred HHHHHHHHHh--hCCCEEEEeCCC--CC-----CCH-HHHHHHHHHHHHHHh-CCCEEEEEeCcHH
Confidence 3444444443 467899999983 11 122 345667888888875 4999999999543
No 264
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=52.98 E-value=42 Score=29.71 Aligned_cols=61 Identities=11% Similarity=0.232 Sum_probs=43.4
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHH-HHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQD-TIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~-~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
.+.+++++|+-.- + .|. .... .+.+-|+.++++.+..|++++|... +...||.|+.
T Consensus 138 ~~p~illlDEP~~--~-----LD~-~~~~~~l~~~l~~~~~~~~~~iiiitH~~~---------------~~~~~d~i~~ 194 (204)
T cd03240 138 SNCGILALDEPTT--N-----LDE-ENIEESLAEIIEERKSQKNFQLIVITHDEE---------------LVDAADHIYR 194 (204)
T ss_pred cCCCEEEEcCCcc--c-----cCH-HHHHHHHHHHHHHHHhccCCEEEEEEecHH---------------HHhhCCEEEE
Confidence 5679999999832 1 121 2234 6788888888888999999999643 2245888998
Q ss_pred EEccC
Q psy4520 204 IQQKF 208 (291)
Q Consensus 204 L~R~~ 208 (291)
|.++.
T Consensus 195 l~~~~ 199 (204)
T cd03240 195 VEKDG 199 (204)
T ss_pred EeeCC
Confidence 87764
No 265
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=52.96 E-value=1.1e+02 Score=27.90 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -.+-+++++|+-. .+ .|. .....+.+.|+.++++ +..|++++|....
T Consensus 144 rl~laraL--~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~l~~~~~~-g~tii~vtH~~~~-------------- 198 (271)
T PRK13638 144 RVAIAGAL--VLQARYLLLDEPT--AG-----LDP-AGRTQMIAIIRRIVAQ-GNHVIISSHDIDL-------------- 198 (271)
T ss_pred HHHHHHHH--HcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------------
Confidence 34444443 4567999999983 11 122 3456788888888764 8899999995432
Q ss_pred ccccCccEEEEEcc
Q psy4520 194 ATQESDNVLIIQQK 207 (291)
Q Consensus 194 IeQdAD~Vi~L~R~ 207 (291)
+..-||.|+++...
T Consensus 199 ~~~~~d~i~~l~~G 212 (271)
T PRK13638 199 IYEISDAVYVLRQG 212 (271)
T ss_pred HHHhCCEEEEEECC
Confidence 44568999988653
No 266
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=52.85 E-value=1.1e+02 Score=28.26 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....+|. .-.+-+++++|+-.- + .|. .....+.+.|+.++++.+..|++++|.-..
T Consensus 148 rv~lAra--l~~~p~lLlLDEPt~--~-----LD~-~~~~~l~~~l~~l~~~~g~tilivtH~~~~-------------- 203 (279)
T PRK13650 148 RVAIAGA--VAMRPKIIILDEATS--M-----LDP-EGRLELIKTIKGIRDDYQMTVISITHDLDE-------------- 203 (279)
T ss_pred HHHHHHH--HHcCCCEEEEECCcc--c-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------------
Confidence 3344444 345679999999842 1 122 345678999999999999999999994331
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
++ -||.|++++.
T Consensus 204 ~~-~~dri~~l~~ 215 (279)
T PRK13650 204 VA-LSDRVLVMKN 215 (279)
T ss_pred HH-hCCEEEEEEC
Confidence 33 4899998864
No 267
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=52.63 E-value=95 Score=23.74 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=29.6
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHH----hcCceEEEEeccCC
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFAS----RSHCHVTLVIHPRK 178 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ak----e~~VpVilvshpRk 178 (291)
......+||||+.+.+. . ..+..+...+..+.. ..+++|++.+++.-
T Consensus 81 ~~~~~~~lilDe~~~~~-------~--~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLS-------R--GAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhh-------H--HHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 44567899999998651 1 123445555555544 36889988877443
No 268
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=52.60 E-value=1e+02 Score=29.08 Aligned_cols=68 Identities=12% Similarity=0.157 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....++.+ -.+-+++++|+-.--. |. .....+...|+.+++ .++.|++++|....
T Consensus 173 rvalA~aL--~~~P~lLlLDEPt~~L-------D~-~~~~~l~~~l~~l~~-~g~tiiivtHd~~~-------------- 227 (305)
T PRK13651 173 RVALAGIL--AMEPDFLVFDEPTAGL-------DP-QGVKEILEIFDNLNK-QGKTIILVTHDLDN-------------- 227 (305)
T ss_pred HHHHHHHH--HhCCCEEEEeCCCCCC-------CH-HHHHHHHHHHHHHHH-CCCEEEEEeeCHHH--------------
Confidence 33444443 4566999999984211 21 345668888888874 59999999996542
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 228 ~~~~adrv~vl~~ 240 (305)
T PRK13651 228 VLEWTKRTIFFKD 240 (305)
T ss_pred HHHhCCEEEEEEC
Confidence 4467999999964
No 269
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=52.56 E-value=1e+02 Score=28.99 Aligned_cols=92 Identities=10% Similarity=0.084 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC-CCCccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN-EQLTVNSVFGSA 192 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e-k~p~lsDLrgSg 192 (291)
..+.+-.++++||.+-|-||++......+ ..+++ .....++++|+.-.+..+..+++.+.+.... .....+.-.+-.
T Consensus 96 fi~s~~~~~~~~~~DGidiD~we~p~~~~-~~~d~-~~~~~~l~el~~~l~~~~~~l~~~v~~~~~~~~~~~~~~~~d~~ 173 (318)
T cd02876 96 LIKLLVTTAKKNHFDGIVLEVWSQLAAYG-VPDKR-KELIQLVIHLGETLHSANLKLILVIPPPREKGNQNGLFTRKDFE 173 (318)
T ss_pred HHHHHHHHHHHcCCCcEEEechhhhcccC-CHHHH-HHHHHHHHHHHHHHhhcCCEEEEEEcCccccccccccccccCHH
Confidence 34444556789999999999775433211 11222 3334567777666556677777666543221 011111111223
Q ss_pred cccccCccEEEEEcc
Q psy4520 193 KATQESDNVLIIQQK 207 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R~ 207 (291)
++.+-+|.|.+.-=|
T Consensus 174 ~l~~~vD~v~lMtYD 188 (318)
T cd02876 174 KLAPHVDGFSLMTYD 188 (318)
T ss_pred HHHhhccEEEEEeec
Confidence 466666666655433
No 270
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=52.55 E-value=1.2e+02 Score=27.92 Aligned_cols=68 Identities=12% Similarity=0.229 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++. .-.+-+++++|+-. .+ .| ...+..+.+.|+.+++ .+..|++++|....
T Consensus 144 rv~lara--l~~~p~lllLDEPt--~g-----LD-~~~~~~l~~~l~~l~~-~g~til~~tH~~~~-------------- 198 (274)
T PRK13644 144 CVALAGI--LTMEPECLIFDEVT--SM-----LD-PDSGIAVLERIKKLHE-KGKTIVYITHNLEE-------------- 198 (274)
T ss_pred HHHHHHH--HHcCCCEEEEeCCc--cc-----CC-HHHHHHHHHHHHHHHh-CCCEEEEEecCHHH--------------
Confidence 3344443 34567999999983 21 12 1334567888888875 49999999996442
Q ss_pred ccccCccEEEEEcc
Q psy4520 194 ATQESDNVLIIQQK 207 (291)
Q Consensus 194 IeQdAD~Vi~L~R~ 207 (291)
++ .||.|+++.+-
T Consensus 199 ~~-~~d~v~~l~~G 211 (274)
T PRK13644 199 LH-DADRIIVMDRG 211 (274)
T ss_pred Hh-hCCEEEEEECC
Confidence 43 49999999753
No 271
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=52.51 E-value=44 Score=28.06 Aligned_cols=46 Identities=20% Similarity=0.074 Sum_probs=29.0
Q ss_pred EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 129 HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 129 lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+||||.-+-..............+.. +.+|-+.|++.++||+.+.|
T Consensus 2 LlviD~Q~~f~~~~~~~~~~~~~v~~-i~~li~~~r~~~~~Vi~~~~ 47 (155)
T cd01014 2 LLVIDVQNGYFDGGLPPLNNEAALEN-IAALIAAARAAGIPVIHVRH 47 (155)
T ss_pred EEEEeCchhhhCCCCCcCCHHHHHHH-HHHHHHHHHHCCCeEEEEEe
Confidence 68999886554322111122233343 46666688999999998877
No 272
>PHA03097 C-type lectin-like protein; Provisional
Probab=52.26 E-value=15 Score=31.80 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=37.3
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
.|.| ...|+++++.|.. ...++.++.++|.+.||+++.=.|.+-+.||
T Consensus 46 CP~g-W~~~~~~CY~~s~-~~~sW~~A~~~C~~~g~~La~I~~~~E~~fi 93 (157)
T PHA03097 46 CRSG-WVGYNNKCYTFSE-NITNKHLAIERCADMDGILTLIDDQKEVLFV 93 (157)
T ss_pred CCCC-ceeeCCEEEEEec-CCCcHHHHHHHHHhCCCEEeeeCCHHHHHHH
Confidence 5555 5668889988754 4677889999999999999987777655554
No 273
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=51.99 E-value=56 Score=28.78 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=42.2
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+. | ......+.+.|+.++++ +..|++++|.... +.+-||.|+.
T Consensus 140 ~~~p~llllDEP~--~~L-----D-~~~~~~l~~~L~~~~~~-~~tiii~sH~~~~--------------~~~~~d~i~~ 196 (223)
T TIGR03740 140 LNHPKLLILDEPT--NGL-----D-PIGIQELRELIRSFPEQ-GITVILSSHILSE--------------VQQLADHIGI 196 (223)
T ss_pred hcCCCEEEECCCc--cCC-----C-HHHHHHHHHHHHHHHHC-CCEEEEEcCCHHH--------------HHHhcCEEEE
Confidence 4567999999983 211 2 23456788888888764 8899999996442 5567888888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 197 l~~ 199 (223)
T TIGR03740 197 ISE 199 (223)
T ss_pred EeC
Confidence 864
No 274
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=51.89 E-value=59 Score=27.20 Aligned_cols=64 Identities=13% Similarity=-0.095 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHH---HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 109 QPLKLVMEAVEHAM---YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 109 ~~i~~i~~~~r~~~---~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
.+.+++.+.++.+. +..++++|++-.... .............+.++.+.|+.+|++.+|+++=+
T Consensus 85 ~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~-~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~vd~ 151 (185)
T cd01832 85 TDPDTYRADLEEAVRRLRAAGARVVVFTIPDP-AVLEPFRRRVRARLAAYNAVIRAVAARYGAVHVDL 151 (185)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEecCCCc-cccchhHHHHHHHHHHHHHHHHHHHHHcCCEEEec
Confidence 34444444444332 256889888875532 11111111223457778899999999999998855
No 275
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=51.89 E-value=19 Score=34.98 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=49.5
Q ss_pred HHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCcc
Q psy4520 121 AMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDN 200 (291)
Q Consensus 121 ~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~ 200 (291)
+..-..-++||=|+=+ .+-|- .-|.+|++-||.+.+|.+..+++++|.=. -+.+-||.
T Consensus 166 mala~~P~LlIADEPT-------TALDv-t~QaqIl~Ll~~l~~e~~~aiilITHDl~--------------vva~~aDr 223 (316)
T COG0444 166 MALALNPKLLIADEPT-------TALDV-TVQAQILDLLKELQREKGTALILITHDLG--------------VVAEIADR 223 (316)
T ss_pred HHHhCCCCEEEeCCCc-------chhhH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------HHHHhcce
Confidence 3445667899988874 12233 45788999999999999999999999533 36678999
Q ss_pred EEEEEcc
Q psy4520 201 VLIIQQK 207 (291)
Q Consensus 201 Vi~L~R~ 207 (291)
|.++|=-
T Consensus 224 i~VMYaG 230 (316)
T COG0444 224 VAVMYAG 230 (316)
T ss_pred EEEEECc
Confidence 9998853
No 276
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=51.82 E-value=37 Score=31.90 Aligned_cols=70 Identities=4% Similarity=0.181 Sum_probs=46.5
Q ss_pred HHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC---CCCccccccccccc
Q psy4520 118 VEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN---EQLTVNSVFGSAKA 194 (291)
Q Consensus 118 ~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e---k~p~lsDLrgSg~I 194 (291)
+..+.+-++-+++++|+.. . .+.+..+.+.+ + .++.|++++|....+ +||.+..|-+.+.+
T Consensus 186 ~~~~i~~~~P~villDE~~-----~------~e~~~~l~~~~----~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~ 249 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIG-----R------EEDVEALLEAL----H-AGVSIIATAHGRDVEDLYKRPVFKELIENEAF 249 (270)
T ss_pred HHHHHHhCCCCEEEEeCCC-----c------HHHHHHHHHHH----h-CCCEEEEEechhHHHHHHhChHHHHHHhcCce
Confidence 4445566899999999952 1 11122233332 2 599999999965554 89999888765554
Q ss_pred cccCccEEEEEcc
Q psy4520 195 TQESDNVLIIQQK 207 (291)
Q Consensus 195 eQdAD~Vi~L~R~ 207 (291)
|.+++|.+.
T Consensus 250 ----~r~i~L~~~ 258 (270)
T TIGR02858 250 ----ERYVVLSRR 258 (270)
T ss_pred ----EEEEEEecC
Confidence 778888753
No 277
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=51.55 E-value=69 Score=29.48 Aligned_cols=67 Identities=16% Similarity=0.047 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+. .+-+++++|+-.- + .|. .....+...|+.++++ ++.|++++|....
T Consensus 147 rv~laral~--~~p~illlDEPts--~-----LD~-~~~~~l~~~l~~l~~~-~~tIIiiSHd~~~-------------- 201 (255)
T cd03236 147 RVAIAAALA--RDADFYFFDEPSS--Y-----LDI-KQRLNAARLIRELAED-DNYVLVVEHDLAV-------------- 201 (255)
T ss_pred HHHHHHHHH--hCCCEEEEECCCC--C-----CCH-HHHHHHHHHHHHHHhc-CCEEEEEECCHHH--------------
Confidence 444444443 4568999999842 1 121 3345567777777765 8999999996553
Q ss_pred ccccCccEEEEE
Q psy4520 194 ATQESDNVLIIQ 205 (291)
Q Consensus 194 IeQdAD~Vi~L~ 205 (291)
+.+-||.|++++
T Consensus 202 ~~~~ad~i~~l~ 213 (255)
T cd03236 202 LDYLSDYIHCLY 213 (255)
T ss_pred HHHhCCEEEEEC
Confidence 456689999884
No 278
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=51.17 E-value=63 Score=28.21 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=26.0
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHH-HHHHHHHhcCceEEEEecc
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQ-EFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r-~LK~~Ake~~VpVilvshp 176 (291)
.+-+++++|+..- + .|. .....+.. -++.+. +.++.|++++|.
T Consensus 107 ~~p~llllDEp~~--g-----lD~-~~~~~i~~~~l~~l~-~~~~~vi~~tH~ 150 (200)
T cd03280 107 DPDSLVLLDELGS--G-----TDP-VEGAALAIAILEELL-ERGALVIATTHY 150 (200)
T ss_pred CCCcEEEEcCCCC--C-----CCH-HHHHHHHHHHHHHHH-hcCCEEEEECCH
Confidence 5678999999932 1 121 22233433 244443 458999999995
No 279
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=51.15 E-value=89 Score=27.11 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=41.9
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .|. .....+.+.|+.+++ .+..|++++|.... +..-||.|++
T Consensus 142 ~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~-~~~tii~~tH~~~~--------------~~~~~d~v~~ 198 (208)
T cd03268 142 LGNPDLLILDEPT--NG-----LDP-DGIKELRELILSLRD-QGITVLISSHLLSE--------------IQKVADRIGI 198 (208)
T ss_pred hcCCCEEEECCCc--cc-----CCH-HHHHHHHHHHHHHHH-CCCEEEEEcCCHHH--------------HHHhcCEEEE
Confidence 3567899999983 11 122 335667888888887 58999999995442 4456888888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 199 l~~ 201 (208)
T cd03268 199 INK 201 (208)
T ss_pred EEC
Confidence 854
No 280
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=51.10 E-value=97 Score=30.86 Aligned_cols=68 Identities=16% Similarity=0.068 Sum_probs=44.1
Q ss_pred HHHhhcCCCeEEEcCCCCC-CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCce
Q psy4520 91 YSDWFKTLPMYFLTFHGPQ-PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCH 169 (291)
Q Consensus 91 a~~~~~~~pl~i~d~~g~~-~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~Vp 169 (291)
..+.+.+.+.=+...+... +.+++.+.++.+... +++.||+-..++ + +. ...-.+++++++|
T Consensus 28 ~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~tf----~----~~--------~~~~~~~~~~~~P 90 (452)
T cd00578 28 VADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEA-NCDGLIVWMHTF----G----PA--------KMWIAGLSELRKP 90 (452)
T ss_pred HHHHHhcCCceEEecCcccCCHHHHHHHHHHHhhc-CCcEEEEccccc----c----cH--------HHHHHHHHhcCCC
Confidence 3444555455444444445 889999999988665 899998766543 1 11 1122235788999
Q ss_pred EEEEec
Q psy4520 170 VTLVIH 175 (291)
Q Consensus 170 Vilvsh 175 (291)
|++++.
T Consensus 91 vll~a~ 96 (452)
T cd00578 91 VLLLAT 96 (452)
T ss_pred EEEEeC
Confidence 999986
No 281
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=51.06 E-value=73 Score=31.26 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
+..+.+|.+ -..-+++++|+- + .+ .|. .....+...|+++.++++++|++++|...
T Consensus 156 QRVaLARAL--~~~P~lLLLDEP-~-s~-----LD~-~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 211 (377)
T PRK11607 156 QRVALARSL--AKRPKLLLLDEP-M-GA-----LDK-KLRDRMQLEVVDILERVGVTCVMVTHDQE 211 (377)
T ss_pred HHHHHHHHH--hcCCCEEEEeCC-c-cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 344555554 345689999998 2 21 121 33456788899999999999999999544
No 282
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=51.01 E-value=1.1e+02 Score=30.71 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
.....++.+ -.+-+++++|+-. .+ -|. ..+..+.+.|+.++++ +..|++++|....
T Consensus 410 qrv~la~al--~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~l~~l~~~-g~tviivsHd~~~------------- 465 (500)
T TIGR02633 410 QKAVLAKML--LTNPRVLILDEPT--RG-----VDV-GAKYEIYKLINQLAQE-GVAIIVVSSELAE------------- 465 (500)
T ss_pred HHHHHHHHH--hhCCCEEEEcCCC--CC-----cCH-hHHHHHHHHHHHHHhC-CCEEEEECCCHHH-------------
Confidence 344444444 3568999999983 11 121 3345677788888776 8999999995443
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 466 -~~~~~d~v~~l~~ 478 (500)
T TIGR02633 466 -VLGLSDRVLVIGE 478 (500)
T ss_pred -HHHhCCEEEEEEC
Confidence 5567898888863
No 283
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=50.76 E-value=1.2e+02 Score=30.38 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
......++.+ -.+-+++++|+-. .+ .| ......+.+.|+.++++ +..|++++|.
T Consensus 141 ~qrv~la~al--~~~p~lllLDEPt--~~-----LD-~~~~~~l~~~l~~~~~~-g~tvii~tH~ 194 (490)
T PRK10938 141 TRKTLLCQAL--MSEPDLLILDEPF--DG-----LD-VASRQQLAELLASLHQS-GITLVLVLNR 194 (490)
T ss_pred HHHHHHHHHH--HcCCCEEEEcCCc--cc-----CC-HHHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 3444445544 4567899999983 11 12 24456688888888776 8999999994
No 284
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=50.47 E-value=72 Score=30.79 Aligned_cols=63 Identities=22% Similarity=0.322 Sum_probs=45.5
Q ss_pred HHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccE
Q psy4520 122 MYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNV 201 (291)
Q Consensus 122 ~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~V 201 (291)
+.-++-+++|+|+-. .+ .| -..+..+.+-|+.++++ +..|++++|.-.. +++-||.|
T Consensus 186 aL~~~P~lLiLDEPt--~g-----LD-~~~r~~l~~~l~~l~~~-g~tilisSH~l~e--------------~~~~~d~i 242 (340)
T PRK13536 186 ALINDPQLLILDEPT--TG-----LD-PHARHLIWERLRSLLAR-GKTILLTTHFMEE--------------AERLCDRL 242 (340)
T ss_pred HHhcCCCEEEEECCC--CC-----CC-HHHHHHHHHHHHHHHhC-CCEEEEECCCHHH--------------HHHhCCEE
Confidence 345678999999983 22 12 13456788888888764 9999999996543 66788999
Q ss_pred EEEEcc
Q psy4520 202 LIIQQK 207 (291)
Q Consensus 202 i~L~R~ 207 (291)
+++..-
T Consensus 243 ~il~~G 248 (340)
T PRK13536 243 CVLEAG 248 (340)
T ss_pred EEEECC
Confidence 888754
No 285
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=50.40 E-value=96 Score=27.51 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=40.1
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
--.+-+++|+|+-. .+ .|. .....+.+.|+.++++ +..|++++|.... +..-||.++
T Consensus 128 l~~~p~llilDEP~--~~-----LD~-~~~~~l~~~l~~~~~~-~~tvii~sH~~~~--------------~~~~~d~i~ 184 (223)
T TIGR03771 128 LATRPSVLLLDEPF--TG-----LDM-PTQELLTELFIELAGA-GTAILMTTHDLAQ--------------AMATCDRVV 184 (223)
T ss_pred HhcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHHc-CCEEEEEeCCHHH--------------HHHhCCEEE
Confidence 34567999999983 21 121 3345678888888754 8999999995442 445578777
Q ss_pred EE
Q psy4520 203 II 204 (291)
Q Consensus 203 ~L 204 (291)
++
T Consensus 185 ~l 186 (223)
T TIGR03771 185 LL 186 (223)
T ss_pred EE
Confidence 76
No 286
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=50.37 E-value=1.2e+02 Score=29.47 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhc-CceEEEEeccCC
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRS-HCHVTLVIHPRK 178 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~-~VpVilvshpRk 178 (291)
+..+.+|.+ -..-+++++|+-. .+ .|. ....++.+.|+++++++ +++|++++|...
T Consensus 144 QRvaLARAL--~~~P~llLLDEP~--s~-----LD~-~~r~~l~~~l~~l~~~~~g~til~vTHd~~ 200 (362)
T TIGR03258 144 QRIAIARAI--AIEPDVLLLDEPL--SA-----LDA-NIRANMREEIAALHEELPELTILCVTHDQD 200 (362)
T ss_pred HHHHHHHHH--hcCCCEEEEcCcc--cc-----CCH-HHHHHHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 344555554 4567899999882 21 122 34566888999999998 899999999543
No 287
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=50.32 E-value=1.1e+02 Score=26.42 Aligned_cols=59 Identities=8% Similarity=0.179 Sum_probs=40.2
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLII 204 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L 204 (291)
.+.+++++|+..- + .|. .....+.+.|+.+++. +..|++++|.... ...||.|+.|
T Consensus 115 ~~p~llilDEp~~--~-----LD~-~~~~~i~~~L~~~~~~-g~tiIiiSH~~~~---------------~~~adrvi~i 170 (178)
T cd03239 115 KPSPFYVLDEIDA--A-----LDP-TNRRRVSDMIKEMAKH-TSQFIVITLKKEM---------------FENADKLIGV 170 (178)
T ss_pred CCCCEEEEECCCC--C-----CCH-HHHHHHHHHHHHHHhC-CCEEEEEECCHHH---------------HhhCCeEEEE
Confidence 4679999999831 1 121 2245677788888765 8899999995331 1358999999
Q ss_pred Ecc
Q psy4520 205 QQK 207 (291)
Q Consensus 205 ~R~ 207 (291)
++.
T Consensus 171 ~~~ 173 (178)
T cd03239 171 LFV 173 (178)
T ss_pred EEe
Confidence 874
No 288
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=50.30 E-value=1.4e+02 Score=28.43 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEecccccc-CCCCCCccH-HHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFML-GLSDSALDR-FYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~-~~~~~~~~r-~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
...+-++-++..+..+||+|-||+-. .|. .-..+..+| |-=-..+-..|..+|.+.|.+|++=
T Consensus 55 ~p~~e~e~A~~~A~~iGi~H~~i~~~-~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~d 119 (269)
T COG1606 55 IPRREIEEAKNIAKEIGIRHEFIKMN-RMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVAD 119 (269)
T ss_pred CChhhhhHHHHHHHHhCCcceeeehh-hcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEe
Confidence 45666677777789999999999877 444 111122344 5555668899999999999999875
No 289
>PRK13409 putative ATPase RIL; Provisional
Probab=50.30 E-value=78 Score=33.01 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=45.7
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-.- + .| ......+.+.|+++|++.+..|++++|.... +.+-||.|+
T Consensus 468 L~~~p~llLLDEPt~--~-----LD-~~~~~~l~~~l~~l~~~~g~tviivsHD~~~--------------~~~~aDrvi 525 (590)
T PRK13409 468 LSRDADLYLLDEPSA--H-----LD-VEQRLAVAKAIRRIAEEREATALVVDHDIYM--------------IDYISDRLM 525 (590)
T ss_pred HhcCCCEEEEeCCcc--C-----CC-HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--------------HHHhCCEEE
Confidence 446789999998831 1 12 2445678999999999999999999995442 456688888
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
+++-
T Consensus 526 vl~~ 529 (590)
T PRK13409 526 VFEG 529 (590)
T ss_pred EEcC
Confidence 8853
No 290
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=50.20 E-value=1.2e+02 Score=30.61 Aligned_cols=53 Identities=11% Similarity=0.126 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccC
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR 177 (291)
....++. .-.+-+++++|+-.- + -| ......+.+.|+.+++ .+..|++++|..
T Consensus 151 rv~la~a--l~~~p~lllLDEPt~--~-----LD-~~~~~~l~~~l~~l~~-~~~tvi~~tH~~ 203 (506)
T PRK13549 151 LVEIAKA--LNKQARLLILDEPTA--S-----LT-ESETAVLLDIIRDLKA-HGIACIYISHKL 203 (506)
T ss_pred HHHHHHH--HhcCCCEEEEeCCCC--C-----CC-HHHHHHHHHHHHHHHH-CCCEEEEEeCcH
Confidence 3444444 346789999999831 1 12 1345667788888865 489999999943
No 291
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=50.10 E-value=1.1e+02 Score=26.75 Aligned_cols=71 Identities=11% Similarity=0.063 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGS 191 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgS 191 (291)
...+..+|.+. .+-+++++|+-.- + .|. .....+.+.|+.++++.+..|++++|....
T Consensus 77 ~qrv~laral~--~~p~lllLDEPts--~-----LD~-~~~~~l~~~l~~~~~~~~~tiiivsH~~~~------------ 134 (177)
T cd03222 77 LQRVAIAAALL--RNATFYLFDEPSA--Y-----LDI-EQRLNAARAIRRLSEEGKKTALVVEHDLAV------------ 134 (177)
T ss_pred HHHHHHHHHHh--cCCCEEEEECCcc--c-----CCH-HHHHHHHHHHHHHHHcCCCEEEEEECCHHH------------
Confidence 34445555543 3568999999831 1 121 334567888888888766999999996543
Q ss_pred ccccccCccEEEEEc
Q psy4520 192 AKATQESDNVLIIQQ 206 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R 206 (291)
+...||.+++++.
T Consensus 135 --~~~~~d~i~~l~~ 147 (177)
T cd03222 135 --LDYLSDRIHVFEG 147 (177)
T ss_pred --HHHhCCEEEEEcC
Confidence 4456788888853
No 292
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=49.93 E-value=1.4e+02 Score=29.59 Aligned_cols=56 Identities=9% Similarity=0.200 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
.....+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|...
T Consensus 171 QRv~LArAL--~~~P~iLLLDEPt--s~-----LD~-~~r~~l~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 171 QRVGLARAL--AINPDILLMDEAF--SA-----LDP-LIRTEMQDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred HHHHHHHHH--hcCCCEEEEECCC--cc-----CCH-HHHHHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 344444443 4567999999983 11 122 34566888899999889999999999543
No 293
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=49.80 E-value=1.1e+02 Score=28.29 Aligned_cols=69 Identities=16% Similarity=0.341 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+. | ......+.+.|+.++++.++.|++++|....
T Consensus 153 rv~laraL--~~~p~illlDEPt--~~L-----D-~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~-------------- 208 (286)
T PRK13646 153 KIAIVSIL--AMNPDIIVLDEPT--AGL-----D-PQSKRQVMRLLKSLQTDENKTIILVSHDMNE-------------- 208 (286)
T ss_pred HHHHHHHH--HhCCCEEEEECCc--ccC-----C-HHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--------------
Confidence 33444443 3567999999983 111 1 1345668888999988899999999995442
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 209 ~~~~~dri~~l~~ 221 (286)
T PRK13646 209 VARYADEVIVMKE 221 (286)
T ss_pred HHHhCCEEEEEEC
Confidence 4567899999864
No 294
>PRK02929 L-arabinose isomerase; Provisional
Probab=49.79 E-value=1e+02 Score=31.75 Aligned_cols=74 Identities=14% Similarity=-0.005 Sum_probs=51.3
Q ss_pred HHHhhcC---CCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcC
Q psy4520 91 YSDWFKT---LPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSH 167 (291)
Q Consensus 91 a~~~~~~---~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~ 167 (291)
..+++.. +|.=|...+-..+.+++.+.++.+....+|+.||+-..++ . +. ...-..+++++
T Consensus 34 i~~~l~~~~~~~~~vv~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TF----s----~a--------~~~i~~~~~l~ 97 (499)
T PRK02929 34 IVDGLNASGKLPVKIVLKPVLTTPDEITAVCREANYDDNCAGVITWMHTF----S----PA--------KMWIRGLSALQ 97 (499)
T ss_pred HHHHhcccCCCCeEEEEcCccCCHHHHHHHHHHccccCCCcEEEEccCCC----c----hH--------HHHHHHHHHcC
Confidence 3555555 7777777666789999999998876678899999866654 1 11 11223378899
Q ss_pred ceEEEEe-c-cCCcC
Q psy4520 168 CHVTLVI-H-PRKEN 180 (291)
Q Consensus 168 VpVilvs-h-pRk~e 180 (291)
+||++++ | +|...
T Consensus 98 ~PvL~~~~Q~~~e~p 112 (499)
T PRK02929 98 KPLLHLHTQFNAEIP 112 (499)
T ss_pred CCEEEEecCCCccCC
Confidence 9999886 4 55543
No 295
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=49.70 E-value=57 Score=32.65 Aligned_cols=64 Identities=8% Similarity=-0.027 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 108 PQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 108 ~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
..+.++|.+..++ +..+|+.+-||-.+.......-...++.+++....+.|+.+|+ .||||+.-
T Consensus 39 vW~~~~i~~~k~~-ie~~GL~~~vvEs~pv~e~Ik~g~~~rd~~Ienyk~~irNla~-~GI~vicY 102 (394)
T TIGR00695 39 VWEKEEIRKRKEY-IESAGLHWSVVESVPVHEAIKTGTGNYGRWIENYKQTLRNLAQ-CGIKTVCY 102 (394)
T ss_pred CCCHHHHHHHHHH-HHHcCCeEEEEeCCCccHHHHcCCCcHHHHHHHHHHHHHHHHH-cCCCEEEE
Confidence 4678888766554 6889999999988854322221235788999999999999995 79999976
No 296
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=49.17 E-value=1.2e+02 Score=30.55 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -.+-+++++|+-.--. | ......+.+.|+.++++ +..|++++|.-..
T Consensus 403 rv~lA~al--~~~p~lllLDEPt~~L-------D-~~~~~~l~~~l~~~~~~-g~tviivtHd~~~-------------- 457 (501)
T PRK10762 403 KVAIARGL--MTRPKVLILDEPTRGV-------D-VGAKKEIYQLINQFKAE-GLSIILVSSEMPE-------------- 457 (501)
T ss_pred HHHHHHHH--hhCCCEEEEcCCCCCC-------C-HhHHHHHHHHHHHHHHC-CCEEEEEcCCHHH--------------
Confidence 33444443 3567899999984211 1 13456678888888776 9999999996443
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+++-||.|+++..
T Consensus 458 ~~~~~d~v~~l~~ 470 (501)
T PRK10762 458 VLGMSDRILVMHE 470 (501)
T ss_pred HHhhCCEEEEEEC
Confidence 5567899999964
No 297
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=49.08 E-value=1e+02 Score=27.13 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=45.5
Q ss_pred HHHHHHHHHHH--hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccc
Q psy4520 113 LVMEAVEHAMY--VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFG 190 (291)
Q Consensus 113 ~i~~~~r~~~~--~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrg 190 (291)
..+..++.+.. -...+++++|+-. .+ .| ...+..+.+.|+++++ ++.|++++|....
T Consensus 120 qrl~la~~l~~~~~~~~~illlDEP~--~~-----LD-~~~~~~l~~~l~~~~~--~~tiIiitH~~~~----------- 178 (197)
T cd03278 120 ALTALALLFAIFRVRPSPFCVLDEVD--AA-----LD-DANVERFARLLKEFSK--ETQFIVITHRKGT----------- 178 (197)
T ss_pred HHHHHHHHHHHhccCCCCEEEEeCCc--cc-----CC-HHHHHHHHHHHHHhcc--CCEEEEEECCHHH-----------
Confidence 44444554432 2456899999883 11 12 2445667788888765 5889999996432
Q ss_pred cccccccCccEEEEEccC
Q psy4520 191 SAKATQESDNVLIIQQKF 208 (291)
Q Consensus 191 Sg~IeQdAD~Vi~L~R~~ 208 (291)
+ ..||.|+.+++.+
T Consensus 179 ---~-~~~d~v~~~~~~~ 192 (197)
T cd03278 179 ---M-EAADRLYGVTMQE 192 (197)
T ss_pred ---H-hhcceEEEEEecc
Confidence 1 2489999998765
No 298
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=49.03 E-value=64 Score=30.43 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHh---CCCcEEEEeccccccCCCCCCccH---HHH---HHHHHHHHHHHHHhcCceEEEEeccCCcC
Q psy4520 110 PLKLVMEAVEHAMYV---YDTGHVIIDNVQFMLGLSDSALDR---FYM---QDTIIQEFRAFASRSHCHVTLVIHPRKEN 180 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~---~gv~lviIDyLqlm~~~~~~~~~r---~~~---~~~i~r~LK~~Ake~~VpVilvshpRk~e 180 (291)
+++.+.+.++.+... .|+++||.=++- +.+-.-..... +.+ -+..++.|+.+|++++|.|++=...+..+
T Consensus 17 Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~-ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~G~~e~~~~ 95 (295)
T cd07566 17 NLSRAWELLDKTKKRAKLKKPDILVLPELA-LTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGYPEKVDE 95 (295)
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEcCCCC-cccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEEEeeeEecCC
Confidence 345555656655542 799999998883 33321110011 111 13467889999999999988643222211
Q ss_pred CCCccccccccccccccCccEEEEEccC
Q psy4520 181 EQLTVNSVFGSAKATQESDNVLIIQQKF 208 (291)
Q Consensus 181 k~p~lsDLrgSg~IeQdAD~Vi~L~R~~ 208 (291)
. + ..+..|.-+-..--.++..||..
T Consensus 96 ~-~--~~~yNta~vi~~~G~ii~~YrK~ 120 (295)
T cd07566 96 S-S--PKLYNSALVVDPEGEVVFNYRKS 120 (295)
T ss_pred C-C--CceEEEEEEEcCCCeEEEEEecc
Confidence 0 0 12444444443333456677654
No 299
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=48.83 E-value=1.3e+02 Score=30.09 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
....++.+ -.+-+++|+|+-.- + -|. .....+.+.|+.++++ +..|++++|.
T Consensus 142 rv~lA~al--~~~p~lllLDEPt~--~-----LD~-~~~~~l~~~l~~l~~~-g~tvii~tH~ 193 (491)
T PRK10982 142 MIEIAKAF--SYNAKIVIMDEPTS--S-----LTE-KEVNHLFTIIRKLKER-GCGIVYISHK 193 (491)
T ss_pred HHHHHHHH--HhCCCEEEEeCCCC--C-----CCH-HHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 34444443 45779999999831 1 122 3456677778888754 8999999994
No 300
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=48.81 E-value=1.6e+02 Score=24.78 Aligned_cols=63 Identities=11% Similarity=-0.059 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHH--HHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQD--TIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~--~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
.+-.+.++..+..+|+.+.++.... -.... .+. .... ...+.|.+.|+++|+..++..|....
T Consensus 44 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~---~~~-~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD 108 (185)
T cd01992 44 DEEAAFVADLCAKLGIPLYILVVAL-APKPG---GNL-EAAAREARYDFFAEIAKEHGADVLLTAHHADD 108 (185)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeecc-ccCCC---CCH-HHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHH
Confidence 3556777777889999999983221 11111 111 1112 23456888999999999999996554
No 301
>PRK10263 DNA translocase FtsK; Provisional
Probab=48.75 E-value=21 Score=40.88 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=32.9
Q ss_pred EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec-cC
Q psy4520 129 HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PR 177 (291)
Q Consensus 129 lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pR 177 (291)
+||||++..+.... ...+.+.+..|-+.++-.|||+|+..| |.
T Consensus 1143 VVIIDE~AdLm~~~------~kevE~lI~rLAqkGRAaGIHLILATQRPs 1186 (1355)
T PRK10263 1143 VVLVDEFADLMMTV------GKKVEELIARLAQKARAAGIHLVLATQRPS 1186 (1355)
T ss_pred EEEEcChHHHHhhh------hHHHHHHHHHHHHHhhhcCeEEEEEecCcc
Confidence 79999995443211 124667888999999999999999998 55
No 302
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.66 E-value=1.2e+02 Score=26.91 Aligned_cols=60 Identities=12% Similarity=0.267 Sum_probs=41.8
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .|. ..+..+.+.|+.+++ +..|++++|.... ++. ||.++
T Consensus 152 L~~~p~llllDEP~--~~-----LD~-~~~~~l~~~l~~~~~--~~tiii~sh~~~~--------------~~~-~d~~~ 206 (236)
T cd03253 152 ILKNPPILLLDEAT--SA-----LDT-HTEREIQAALRDVSK--GRTTIVIAHRLST--------------IVN-ADKII 206 (236)
T ss_pred HhcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHhcC--CCEEEEEcCCHHH--------------HHh-CCEEE
Confidence 34567999999983 21 121 335667888888865 8999999996442 333 89999
Q ss_pred EEEcc
Q psy4520 203 IIQQK 207 (291)
Q Consensus 203 ~L~R~ 207 (291)
++...
T Consensus 207 ~l~~g 211 (236)
T cd03253 207 VLKDG 211 (236)
T ss_pred EEECC
Confidence 99754
No 303
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=48.64 E-value=1e+02 Score=26.97 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=40.6
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .|. .....+.+.|+.+++ +..|++++|.... +.+-||.|++
T Consensus 149 ~~~p~llllDEP~--~~-----LD~-~~~~~l~~~l~~~~~--~~tii~~sH~~~~--------------~~~~~d~i~~ 204 (220)
T cd03263 149 IGGPSVLLLDEPT--SG-----LDP-ASRRAIWDLILEVRK--GRSIILTTHSMDE--------------AEALCDRIAI 204 (220)
T ss_pred hcCCCEEEECCCC--CC-----CCH-HHHHHHHHHHHHHhc--CCEEEEEcCCHHH--------------HHHhcCEEEE
Confidence 4577999999983 11 121 334567888888876 4889999995432 4566788888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 205 l~~ 207 (220)
T cd03263 205 MSD 207 (220)
T ss_pred EEC
Confidence 864
No 304
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=48.49 E-value=61 Score=27.79 Aligned_cols=59 Identities=14% Similarity=-0.012 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
|.++.+++ .+.|-.+|||-|=.-+... -.......+.+++..+.+++++|+.+.+.+.+
T Consensus 34 v~~~L~~l-~~~Gy~IvIvTNQ~gi~~~-----~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~ 92 (159)
T PF08645_consen 34 VPEALREL-HKKGYKIVIVTNQSGIGRG-----MGEKDLENFHEKIENILKELGIPIQVYAAPHK 92 (159)
T ss_dssp HHHHHHHH-HHTTEEEEEEEE-CCCCCT-----BTCCHHHHHHHHHHHHHHHCTS-EEEEECGCS
T ss_pred HHHHHHHH-HhcCCeEEEEeCccccccc-----cccchHHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 66777776 7789999998886332211 01133566889999999999999987765444
No 305
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=48.26 E-value=55 Score=30.37 Aligned_cols=64 Identities=9% Similarity=0.082 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHh----CCCcEEEEeccccccCCCCCCcc-H--HHH-----HHHHHHHHHHHHHhcCceEEEEe
Q psy4520 110 PLKLVMEAVEHAMYV----YDTGHVIIDNVQFMLGLSDSALD-R--FYM-----QDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~----~gv~lviIDyLqlm~~~~~~~~~-r--~~~-----~~~i~r~LK~~Ake~~VpVilvs 174 (291)
+++.+.+.++.++.+ .|+++||.=++- +.+-...... . +.. -+..++.|+.+|++++|+|++-.
T Consensus 22 Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~-ltGy~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G~ 97 (294)
T cd07582 22 NIDRINEQIDAAVGFSGPGLPVRLVVLPEYA-LQGFPMGEPREVWQFDKAAIDIPGPETEALGEKAKELNVYIAANA 97 (294)
T ss_pred HHHHHHHHHHHHHHhcccCCCceEEEcCccc-cccCCcccchhhhhhhhccccCCCHHHHHHHHHHHHcCEEEEEee
Confidence 567777778777665 479999988873 3332110000 0 011 13478999999999999988644
No 306
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=48.05 E-value=1.1e+02 Score=28.17 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=42.8
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-..-+++++|+-.- + .| ...+..+.+.|+.++++ +..|++++|.... +..-||.|++
T Consensus 153 ~~~p~llllDEPt~--g-----LD-~~~~~~l~~~l~~l~~~-~~til~vtH~~~~--------------~~~~~d~i~~ 209 (275)
T PRK13639 153 AMKPEIIVLDEPTS--G-----LD-PMGASQIMKLLYDLNKE-GITIIISTHDVDL--------------VPVYADKVYV 209 (275)
T ss_pred hcCCCEEEEeCCCc--C-----CC-HHHHHHHHHHHHHHHHC-CCEEEEEecCHHH--------------HHHhCCEEEE
Confidence 44679999999831 1 12 23456788888888876 9999999995442 4456888888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 210 l~~ 212 (275)
T PRK13639 210 MSD 212 (275)
T ss_pred EEC
Confidence 864
No 307
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.02 E-value=1.4e+02 Score=26.28 Aligned_cols=66 Identities=11% Similarity=0.219 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -.+-+++++|+-. .+- |. .....+.+.|+.+++ +..|++++|....
T Consensus 146 rv~la~al--~~~p~lllLDEP~--~~L-----D~-~~~~~l~~~l~~~~~--~~tii~~sh~~~~-------------- 199 (234)
T cd03251 146 RIAIARAL--LKDPPILILDEAT--SAL-----DT-ESERLVQAALERLMK--NRTTFVIAHRLST-------------- 199 (234)
T ss_pred HHHHHHHH--hcCCCEEEEeCcc--ccC-----CH-HHHHHHHHHHHHhcC--CCEEEEEecCHHH--------------
Confidence 33444443 3567899999983 221 21 234567777777764 7889999995542
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
++. ||.|++++.
T Consensus 200 ~~~-~d~v~~l~~ 211 (234)
T cd03251 200 IEN-ADRIVVLED 211 (234)
T ss_pred Hhh-CCEEEEecC
Confidence 444 899999864
No 308
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=47.92 E-value=1.7e+02 Score=25.59 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=42.0
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .| ......+.+.|+.++++.+..|++++|.... +. .+|.|++
T Consensus 157 ~~~p~illlDEPt--~~-----LD-~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~--------------~~-~~d~v~~ 213 (221)
T TIGR02211 157 VNQPSLVLADEPT--GN-----LD-NNNAKIIFDLMLELNRELNTSFLVVTHDLEL--------------AK-KLDRVLE 213 (221)
T ss_pred hCCCCEEEEeCCC--Cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--------------Hh-hcCEEEE
Confidence 3567899999983 11 12 2345678888899988889999999995432 32 3688888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 214 l~~ 216 (221)
T TIGR02211 214 MKD 216 (221)
T ss_pred EeC
Confidence 853
No 309
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=47.78 E-value=1.6e+02 Score=27.82 Aligned_cols=172 Identities=14% Similarity=0.131 Sum_probs=94.8
Q ss_pred cCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccch------hhhhccccccccccCCCCc-hhHHHHHhhccchh
Q psy4520 11 QGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEY------SDWFKTLPMYFLTFHGPQP-LKLVMELVRKPLLD 83 (291)
Q Consensus 11 qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~ 83 (291)
.|..+++..-==+.+..+-|++.-+..-..-......... -..+..+-|.|-++-+... --.+.+.+.+|+..
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~ 111 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP 111 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc
Confidence 5666666555556677777777654331111110000000 0234556666766666554 33344444444432
Q ss_pred -----hhhhHHHHHHhhcCCCeEEEc----CCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHH
Q psy4520 84 -----NLDKFDEYSDWFKTLPMYFLT----FHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDT 154 (291)
Q Consensus 84 -----~~~~~~~a~~~~~~~pl~i~d----~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~ 154 (291)
.-.++.++.+.+.=-|=|.+. .+|. --+..+.+|.+ --.-+++|.|+-.-++ | -.-|++
T Consensus 112 ~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGG--Q~QRiaIARAL--~~~PklLIlDEptSaL-------D-~siQa~ 179 (252)
T COG1124 112 HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGG--QRQRIAIARAL--IPEPKLLILDEPTSAL-------D-VSVQAQ 179 (252)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChh--HHHHHHHHHHh--ccCCCEEEecCchhhh-------c-HHHHHH
Confidence 111223333322111112222 2332 23344555544 3457899999984222 2 144788
Q ss_pred HHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccC
Q psy4520 155 IIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKF 208 (291)
Q Consensus 155 i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~ 208 (291)
|..-|..+.+++|...++++|.= +.++.-||.|+++++-.
T Consensus 180 IlnlL~~l~~~~~lt~l~IsHdl--------------~~v~~~cdRi~Vm~~G~ 219 (252)
T COG1124 180 ILNLLLELKKERGLTYLFISHDL--------------ALVEHMCDRIAVMDNGQ 219 (252)
T ss_pred HHHHHHHHHHhcCceEEEEeCcH--------------HHHHHHhhheeeeeCCe
Confidence 99999999999999999999952 34788999999998754
No 310
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.73 E-value=2.5e+02 Score=26.54 Aligned_cols=77 Identities=13% Similarity=0.040 Sum_probs=44.9
Q ss_pred HHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceE
Q psy4520 91 YSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHV 170 (291)
Q Consensus 91 a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpV 170 (291)
..+.+.+..+||.|.-+ +-. +.+-.+..+.||..+-=|=+ +.+ ++....+..=++.+..+|+.++-+
T Consensus 143 ~m~~Lk~r~l~flDs~T--~a~---S~a~~iAk~~gVp~~~rdvf--LD~-----e~~~~~V~kql~~~~~~Ark~G~a- 209 (250)
T COG2861 143 LMEALKERGLYFLDSGT--IAN---SLAGKIAKEIGVPVIKRDVF--LDD-----EDTEAAVLKQLDAAEKLARKNGSA- 209 (250)
T ss_pred HHHHHHHCCeEEEcccc--ccc---chhhhhHhhcCCceeeeeee--ecC-----cCCHHHHHHHHHHHHHHHHhcCce-
Confidence 35556666688888532 122 22333445666654433322 111 122456667788899999999875
Q ss_pred EEEeccCCcC
Q psy4520 171 TLVIHPRKEN 180 (291)
Q Consensus 171 ilvshpRk~e 180 (291)
|.+-||++..
T Consensus 210 i~IGh~~~~T 219 (250)
T COG2861 210 IGIGHPHKNT 219 (250)
T ss_pred EEecCCchhH
Confidence 5678888864
No 311
>cd03594 CLECT_REG-1_like C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2). CLECT_REG-1_like: C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. REG-1 is a proliferating factor which participates in various kinds of tissue regeneration including pancreatic beta-cell regeneration, regeneration of intestinal mucosa, regeneration of motor neurons, and perhaps in tissue regeneration of damaged heart. REG-1 may play a role on the pathophysiology of Alzheimer's disease and in the development of gastric cancers. Its expression is correlated with reduced survival from early-stage colorectal cancer. REG-1 also binds and aggregates
Probab=47.56 E-value=18 Score=28.65 Aligned_cols=43 Identities=30% Similarity=0.705 Sum_probs=33.4
Q ss_pred eeeeceEeEEeeCCCCchhhhHhhhhccC--CCcccCCCccccccc
Q psy4520 238 ATYNGKCYIFYNRRPMNLRDSLAFCRSRG--GSLVDESNPALQGFI 281 (291)
Q Consensus 238 l~f~g~~~~f~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 281 (291)
..|.+.++.|++. ..++.++.++|.+.| |.++.-.+..-+-||
T Consensus 6 ~~~~~~Cy~~~~~-~~tw~~A~~~C~~~~~g~~La~i~s~~e~~~l 50 (129)
T cd03594 6 LPYKGNCYGYFRQ-PLSWSDAELFCQKYGPGAHLASIHSPAEAAAI 50 (129)
T ss_pred EecCCEeeeEecc-CcCHHHHHHHHHhcCCCceEcccCCHHHHHHH
Confidence 3577889888754 789999999999994 899877776544444
No 312
>PRK13409 putative ATPase RIL; Provisional
Probab=47.36 E-value=1.2e+02 Score=31.61 Aligned_cols=61 Identities=16% Similarity=0.051 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
.|--+....+=..+.-.+-+++++|+-.--. |. .....+.+.|+.+++ +..|++++|....
T Consensus 213 LSgGe~qrv~ia~al~~~p~lllLDEPts~L-------D~-~~~~~l~~~i~~l~~--g~tvIivsHd~~~ 273 (590)
T PRK13409 213 LSGGELQRVAIAAALLRDADFYFFDEPTSYL-------DI-RQRLNVARLIRELAE--GKYVLVVEHDLAV 273 (590)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCC-------CH-HHHHHHHHHHHHHHC--CCEEEEEeCCHHH
Confidence 3444433333223344678999999984211 22 334567778888876 9999999996553
No 313
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=47.10 E-value=47 Score=29.39 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=31.6
Q ss_pred CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 126 DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
..-+||||.=+-..............+-.-+.+|-..|++.|+||+.+.|+
T Consensus 29 ~tALlvID~Q~~f~~~~~~~~~~~~~~~~~i~~li~~ar~~g~pVi~t~~~ 79 (203)
T cd01013 29 RAVLLVHDMQRYFLDFYDESAEPVPQLIANIARLRDWCRQAGIPVVYTAQP 79 (203)
T ss_pred cEEEEEEeChhhhhCccccccchHHHHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 456999998874443211111222333334677777899999999998763
No 314
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=47.09 E-value=1.7e+02 Score=27.84 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-.- + .| ......+.+.|+.++++ +..|++++|.-..
T Consensus 184 RvaiAraL--~~~p~iLLLDEPts--g-----LD-~~~~~~l~~~L~~l~~~-g~TiiivtHd~~~-------------- 238 (320)
T PRK13631 184 RVAIAGIL--AIQPEILIFDEPTA--G-----LD-PKGEHEMMQLILDAKAN-NKTVFVITHTMEH-------------- 238 (320)
T ss_pred HHHHHHHH--HcCCCEEEEECCcc--C-----CC-HHHHHHHHHHHHHHHHC-CCEEEEEecCHHH--------------
Confidence 44444443 45778999999832 1 12 23456688888888765 8999999995332
Q ss_pred ccccCccEEEEEcc
Q psy4520 194 ATQESDNVLIIQQK 207 (291)
Q Consensus 194 IeQdAD~Vi~L~R~ 207 (291)
+...||.|+++..-
T Consensus 239 ~~~~adri~vl~~G 252 (320)
T PRK13631 239 VLEVADEVIVMDKG 252 (320)
T ss_pred HHHhCCEEEEEECC
Confidence 34668888888653
No 315
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=47.07 E-value=2.2e+02 Score=26.09 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=43.3
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|.... +. .||.|+
T Consensus 157 l~~~p~lllLDEP~--~g-----LD~-~~~~~l~~~l~~~~~~~~~tiii~sH~~~~--------------~~-~~d~v~ 213 (271)
T PRK13632 157 LALNPEIIIFDEST--SM-----LDP-KGKREIKKIMVDLRKTRKKTLISITHDMDE--------------AI-LADKVI 213 (271)
T ss_pred HHcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHHhcCcEEEEEEechhH--------------Hh-hCCEEE
Confidence 34567999999983 11 122 445678899999988877999999995432 33 489998
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 214 ~l~~ 217 (271)
T PRK13632 214 VFSE 217 (271)
T ss_pred EEEC
Confidence 8864
No 316
>PHA02953 IEV and EEV membrane glycoprotein; Provisional
Probab=47.00 E-value=19 Score=31.63 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=32.8
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCC
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDES 273 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (291)
+|.| ...|+|.|++|++. ..++.++.++|.+.||.|+...
T Consensus 47 CP~G-W~~~~~~CYk~f~~-~~tW~~A~~~C~~~Gg~L~~~~ 86 (170)
T PHA02953 47 CAKG-WIPYDNYCYLDTNI-QLSTYGAVYLCNKYRARLPKPN 86 (170)
T ss_pred Cccc-ChhhCCEEEEEECC-cCCHHHHHHHHHhcCCCCCCCc
Confidence 6666 45678999998776 5899999999999999997644
No 317
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=46.94 E-value=92 Score=29.38 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=44.6
Q ss_pred HHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccE
Q psy4520 122 MYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNV 201 (291)
Q Consensus 122 ~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~V 201 (291)
+.-++-+++++|+-. .+- | -.....+.+.|+.++++ ++.|++++|.... ++.-||.|
T Consensus 152 aL~~~P~lllLDEPt--~gL-----D-~~~~~~l~~~l~~l~~~-g~till~sH~l~e--------------~~~~~d~i 208 (306)
T PRK13537 152 ALVNDPDVLVLDEPT--TGL-----D-PQARHLMWERLRSLLAR-GKTILLTTHFMEE--------------AERLCDRL 208 (306)
T ss_pred HHhCCCCEEEEeCCC--cCC-----C-HHHHHHHHHHHHHHHhC-CCEEEEECCCHHH--------------HHHhCCEE
Confidence 345678999999983 221 2 13345677888888654 9999999996543 56778999
Q ss_pred EEEEcc
Q psy4520 202 LIIQQK 207 (291)
Q Consensus 202 i~L~R~ 207 (291)
+++.+-
T Consensus 209 ~il~~G 214 (306)
T PRK13537 209 CVIEEG 214 (306)
T ss_pred EEEECC
Confidence 888764
No 318
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=46.90 E-value=1.3e+02 Score=28.28 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=45.8
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec-cCCcCCCCccccccccccccccCccE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRKENEQLTVNSVFGSAKATQESDNV 201 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk~ek~p~lsDLrgSg~IeQdAD~V 201 (291)
--...+++++|+-.-- -| ..-|-++++-+++++++.|..|+++.| +-- .-.-||.+
T Consensus 153 LaQ~~~iLLLDEPTs~-------LD-i~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~---------------A~ryad~~ 209 (258)
T COG1120 153 LAQETPILLLDEPTSH-------LD-IAHQIEVLELLRDLNREKGLTVVMVLHDLNL---------------AARYADHL 209 (258)
T ss_pred HhcCCCEEEeCCCccc-------cC-HHHHHHHHHHHHHHHHhcCCEEEEEecCHHH---------------HHHhCCEE
Confidence 3456889999988311 12 234678999999999999999999999 211 23567888
Q ss_pred EEEEccC
Q psy4520 202 LIIQQKF 208 (291)
Q Consensus 202 i~L~R~~ 208 (291)
+++..-.
T Consensus 210 i~lk~G~ 216 (258)
T COG1120 210 ILLKDGK 216 (258)
T ss_pred EEEECCe
Confidence 8887543
No 319
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=46.73 E-value=1.6e+02 Score=28.14 Aligned_cols=81 Identities=7% Similarity=0.029 Sum_probs=50.6
Q ss_pred CCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecccccc-CCCCCCcc-HHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 98 LPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFML-GLSDSALD-RFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 98 ~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~-~~~~~~~~-r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.|+...|+. ....+..+-++..+.++|++++++.+=..+. +......+ .+----.=+..|++.++++++-+++.-|
T Consensus 58 ~~vl~iDTG--~~FpEt~ef~d~~a~~~gl~l~v~~~~~~i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~ 135 (301)
T PRK05253 58 FPLLHVDTG--WKFPEMIEFRDRRAKELGLELIVHSNPEGIARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGA 135 (301)
T ss_pred eeEEEEeCC--CCCHHHHHHHHHHHHHhCCCEEEEeChHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEecc
Confidence 455555543 2346777888888899999999986543221 11111111 1111122355788999999999999999
Q ss_pred cCCcC
Q psy4520 176 PRKEN 180 (291)
Q Consensus 176 pRk~e 180 (291)
.|..+
T Consensus 136 RrDE~ 140 (301)
T PRK05253 136 RRDEE 140 (301)
T ss_pred ccchh
Confidence 88775
No 320
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=46.72 E-value=1.2e+02 Score=22.68 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=32.8
Q ss_pred HHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 120 HAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 120 ~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
..++....++|+||++..+.... .............+.......++.|++.+++
T Consensus 72 ~~~~~~~~~viiiDei~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 72 ALARKLKPDVLILDEITSLLDAE---QEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHhcCCCEEEEECCcccCCHH---HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 33444557999999996543321 0111111111446777888889999998886
No 321
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=46.70 E-value=93 Score=25.90 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCC-cEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 116 EAVEHAMYVYDT-GHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 116 ~~~r~~~~~~gv-~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
..+-.+.....- .+++||+... .-| ...|..+++.|+.+++ .++.|++.+|+
T Consensus 246 ~l~~~l~~~~~~~~illiDEpE~-~LH-------p~~q~~l~~~l~~~~~-~~~QviitTHS 298 (303)
T PF13304_consen 246 SLLSLLLSAKKNGSILLIDEPEN-HLH-------PSWQRKLIELLKELSK-KNIQVIITTHS 298 (303)
T ss_dssp HHHHHHHTTTTT-SEEEEESSST-TSS-------HHHHHHHHHHHHHTGG-GSSEEEEEES-
T ss_pred HHHHHHhCcCCCCeEEEecCCcC-CCC-------HHHHHHHHHHHHhhCc-cCCEEEEeCcc
Confidence 333333333333 8999999942 211 1556778899988888 99999999994
No 322
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=46.64 E-value=86 Score=29.11 Aligned_cols=78 Identities=8% Similarity=0.115 Sum_probs=52.4
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCC------------------CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCcc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGP------------------QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALD 147 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~------------------~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~ 147 (291)
+.+..|...+.+.++++.|+... .++++|.+.++.++. +-.-.+++|.|..|...+
T Consensus 95 ~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~v~~a~~~~~~G~s~~eI~~~l~~~~~-~~~~~f~v~~L~~L~~gG----- 168 (275)
T TIGR00762 95 QSARQAAEMVDEAKVTVIDSKSASMGLGLLVLEAAKLAEEGKSLEEILAKLEELRE-RTKLYFVVDTLEYLVKGG----- 168 (275)
T ss_pred HHHHHHHhhCCCCCEEEECChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-hcEEEEEECcHHHHHhcC-----
Confidence 34445666666668999996532 578999988887543 334578889996554322
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 148 RFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 148 r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+|++.-..+|+-++|.-++-..
T Consensus 169 ------Ris~~~~~~g~lL~ikPIi~~~ 190 (275)
T TIGR00762 169 ------RISKAAALIGSLLNIKPILTVD 190 (275)
T ss_pred ------CccHHHHHHHHhhcceeEEEEe
Confidence 2666667788888887665554
No 323
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=46.27 E-value=41 Score=30.18 Aligned_cols=67 Identities=13% Similarity=0.038 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccH----HHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDR----FYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r----~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
+++.+.+.++.+ ...|+++||.=++- +.+........ ....+.....|+.+|++++|+|++-+.+.+
T Consensus 16 n~~~~~~~i~~A-~~~g~dlivfPE~~-l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~ 86 (265)
T cd07572 16 NLARAKELIEEA-AAQGAKLVVLPECF-NYPGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLVGGSIPER 86 (265)
T ss_pred HHHHHHHHHHHH-HHCCCCEEECCccc-cCcCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEEEeeeccc
Confidence 345555666654 34689999988883 33322100011 011235788999999999999998766543
No 324
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=46.26 E-value=1.8e+02 Score=28.13 Aligned_cols=84 Identities=12% Similarity=0.034 Sum_probs=55.5
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEec-cc-cc--c-CC------CCC-CccHHHHHH
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDN-VQ-FM--L-GL------SDS-ALDRFYMQD 153 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDy-Lq-lm--~-~~------~~~-~~~r~~~~~ 153 (291)
..+.++.....+.|+++==++ ++++|.+.++. +.++|.|-|+.=| +- -+ . .. ... +-+--.-..
T Consensus 150 ~~l~~~vk~~~~~Pv~vKl~P---~~~di~~iA~~-~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp 225 (310)
T COG0167 150 EKLLEAVKAATKVPVFVKLAP---NITDIDEIAKA-AEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKP 225 (310)
T ss_pred HHHHHHHHhcccCceEEEeCC---CHHHHHHHHHH-HHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchH
Confidence 456666777777999997765 68889888876 5889988766555 21 11 0 01 000 111112234
Q ss_pred HHHHHHHHHHHhcC--ceEEEE
Q psy4520 154 TIIQEFRAFASRSH--CHVTLV 173 (291)
Q Consensus 154 ~i~r~LK~~Ake~~--VpVilv 173 (291)
..++.++.++++.+ ||||-+
T Consensus 226 ~al~~v~~l~~~~~~~ipIIGv 247 (310)
T COG0167 226 IALRVVAELYKRLGGDIPIIGV 247 (310)
T ss_pred HHHHHHHHHHHhcCCCCcEEEe
Confidence 47899999999988 999987
No 325
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=46.05 E-value=1.3e+02 Score=27.08 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=42.7
Q ss_pred hcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 95 FKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 95 ~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
+..-.+-+|.-|- .-.+++.++.+...+-..+.++|+--= +| =+.|++..|.+-++++||||-+.
T Consensus 111 iRGERISvDTiPl-VGEE~laEAVkAV~rLpRv~iLVLAGs-lM-------------GGkIteaVk~lr~~hgI~VISL~ 175 (218)
T COG1707 111 IRGERISVDTIPL-VGEEELAEAVKAVARLPRVGILVLAGS-LM-------------GGKITEAVKELREEHGIPVISLN 175 (218)
T ss_pred cccceeeeecccc-cChHHHHHHHHHHhccccceeEEEecc-cc-------------cchHHHHHHHHHHhcCCeEEEec
Confidence 3334455555442 456778777776555566777663221 12 14478888888899999999875
Q ss_pred ccC
Q psy4520 175 HPR 177 (291)
Q Consensus 175 hpR 177 (291)
-+-
T Consensus 176 M~G 178 (218)
T COG1707 176 MFG 178 (218)
T ss_pred cCC
Confidence 543
No 326
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=45.79 E-value=1.3e+02 Score=26.95 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.+++ ++.|++++|....
T Consensus 154 rv~laral--~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~l~~~~~--~~tiiivtH~~~~-------------- 207 (250)
T PRK14245 154 RLCIARAM--AVSPSVLLMDEPA--SA-----LDP-ISTAKVEELIHELKK--DYTIVIVTHNMQQ-------------- 207 (250)
T ss_pred HHHHHHHH--hcCCCEEEEeCCC--cc-----CCH-HHHHHHHHHHHHHhc--CCeEEEEeCCHHH--------------
Confidence 33444443 4577999999983 21 121 334567888888854 6899999995442
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+..-||.|++|+.
T Consensus 208 ~~~~~d~v~~l~~ 220 (250)
T PRK14245 208 AARVSDKTAFFYM 220 (250)
T ss_pred HHhhCCEEEEEEC
Confidence 4567899999975
No 327
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=45.78 E-value=30 Score=32.15 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
+++.+.+.++.+ .+.|+++||.=++- +.+...........-+..++.|+.+|++++|+|++=.
T Consensus 16 Nl~~~~~~i~~A-~~~gadlvvfPE~~-ltG~~~~~~~~~~~~~~~~~~l~~lA~~~~i~iv~G~ 78 (279)
T cd07579 16 NLATIDRLAAEA-KATGAELVVFPELA-LTGLDDPASEAESDTGPAVSALRRLARRLRLYLVAGF 78 (279)
T ss_pred HHHHHHHHHHHH-HHCCCCEEEeCCcc-ccCCCChHHhcccCCCHHHHHHHHHHHHcCeEEEEec
Confidence 345555555554 45689999987773 3332110000000113578899999999999888543
No 328
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=45.17 E-value=1.4e+02 Score=27.33 Aligned_cols=79 Identities=9% Similarity=-0.129 Sum_probs=47.3
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCC-CccHHHHHHHHHH-HHHHHHHhcCceEEEEeccC
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDS-ALDRFYMQDTIIQ-EFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~-~~~r~~~~~~i~r-~LK~~Ake~~VpVilvshpR 177 (291)
++|+-.-...+ +.-...++..+...|+.+++.+-- -....... +.+--..-..+-+ .|..+|+++|+.+++.+|++
T Consensus 53 ~~Vd~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~ 130 (298)
T COG0037 53 VHVDHGLRGYS-DQEAELVEKLCEKLGIPLIVERVT-DDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHL 130 (298)
T ss_pred EEecCCCCCcc-chHHHHHHHHHHHhCCceEEEEEE-eeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCc
Confidence 45544333233 556677778889999966665443 22221100 0112222333333 48999999999999999988
Q ss_pred CcC
Q psy4520 178 KEN 180 (291)
Q Consensus 178 k~e 180 (291)
.-.
T Consensus 131 dD~ 133 (298)
T COG0037 131 DDQ 133 (298)
T ss_pred HHH
Confidence 875
No 329
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=44.92 E-value=1.2e+02 Score=27.18 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=40.9
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .|. .....+.+.|+.+++ +..|++++|.... +.+-||.|+
T Consensus 161 l~~~p~llllDEP~--~~-----LD~-~~~~~l~~~l~~~~~--~~tiii~sH~~~~--------------~~~~~d~v~ 216 (250)
T PRK14240 161 LAVEPEVLLMDEPT--SA-----LDP-ISTLKIEELIQELKK--DYTIVIVTHNMQQ--------------ASRISDKTA 216 (250)
T ss_pred HhcCCCEEEEeCCC--cc-----CCH-HHHHHHHHHHHHHhc--CCeEEEEEeCHHH--------------HHhhCCEEE
Confidence 34567999999983 22 121 334557778888854 6789999996542 556789998
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
+|..
T Consensus 217 ~l~~ 220 (250)
T PRK14240 217 FFLN 220 (250)
T ss_pred EEEC
Confidence 8864
No 330
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=44.83 E-value=1.6e+02 Score=29.44 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=43.9
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccc-cCccE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQ-ESDNV 201 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQ-dAD~V 201 (291)
.-.+-+++++|+-. .+ .| ......+.+.|+.++++.+..|++++|.... +.+ -||.|
T Consensus 416 l~~~p~lllLDEPt--~g-----LD-~~~~~~l~~~L~~l~~~~~~tviivsHd~~~--------------~~~~~~d~v 473 (490)
T PRK10938 416 LVKHPTLLILDEPL--QG-----LD-PLNRQLVRRFVDVLISEGETQLLFVSHHAED--------------APACITHRL 473 (490)
T ss_pred HhcCCCEEEEcCcc--cc-----CC-HHHHHHHHHHHHHHHhcCCcEEEEEecchhh--------------hhhhhheeE
Confidence 34678999999983 21 12 2445678888999988866789999996553 333 47888
Q ss_pred EEEEc
Q psy4520 202 LIIQQ 206 (291)
Q Consensus 202 i~L~R 206 (291)
++++.
T Consensus 474 ~~l~~ 478 (490)
T PRK10938 474 EFVPD 478 (490)
T ss_pred EEecC
Confidence 88864
No 331
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=44.75 E-value=1.2e+02 Score=30.33 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++. .-.+-+++++|+-. .+- | ......+.+.|+.++++ +..|++++|....
T Consensus 399 rv~la~a--l~~~p~illLDEPt--~gL-----D-~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~~-------------- 453 (491)
T PRK10982 399 KVIIGRW--LLTQPEILMLDEPT--RGI-----D-VGAKFEIYQLIAELAKK-DKGIIIISSEMPE-------------- 453 (491)
T ss_pred HHHHHHH--HhcCCCEEEEcCCC--ccc-----C-hhHHHHHHHHHHHHHHC-CCEEEEECCChHH--------------
Confidence 3344443 34678999999983 111 1 13345577778887765 8999999996543
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+..-||.|++++.
T Consensus 454 ~~~~~d~v~~l~~ 466 (491)
T PRK10982 454 LLGITDRILVMSN 466 (491)
T ss_pred HHhhCCEEEEEEC
Confidence 4567999999964
No 332
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=44.60 E-value=11 Score=32.96 Aligned_cols=49 Identities=10% Similarity=0.056 Sum_probs=31.2
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
..--+++||++..+..... .+....+...+..|-+.++..+||+++..|
T Consensus 153 ~~~i~~~iDe~~~l~~~~~--~~~~~~~~~~l~~i~~~gR~~Gi~li~~~Q 201 (205)
T PF01580_consen 153 LPPIFIVIDEFAALRDSAP--DDSKKEIMDLLARIARKGRAAGIHLILATQ 201 (205)
T ss_dssp --EEEEEECTHHHHHHHHH--HH----HHHHHHHHHHHCGGGTEEEEEEES
T ss_pred CchHHHHhhhHHHHHhhcc--hhhHHHHHHHHHHHHHHHHhcCEEEEEEeC
Confidence 3445888999965543211 111344566777777779999999999988
No 333
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=44.58 E-value=49 Score=30.61 Aligned_cols=57 Identities=5% Similarity=-0.116 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhC--CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 111 LKLVMEAVEHAMYVY--DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 111 i~~i~~~~r~~~~~~--gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
..-+.+.++.++... .-.+-+.|+|++ -. . . ........++++.++..++++|+||+
T Consensus 23 ~~av~~~~~diaa~G~~a~P~~~~~~l~~-~~-~-~-p~~~~~l~~~~~gi~~a~~~~g~piv 81 (272)
T cd02193 23 ATGVGGAIRDIAATGIDAKPIALSANWMA-SA-G-H-PGEDAILYDAVKGVAELCNQLGLPIP 81 (272)
T ss_pred HHHHHHHHhhhhhcCCCccceEEeeeccc-CC-C-C-CCHHHHHHHHHHHHHHHhHhhCCccc
Confidence 445666777766655 667999999964 21 1 1 12335578999999999999999998
No 334
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=44.53 E-value=1.2e+02 Score=28.08 Aligned_cols=69 Identities=12% Similarity=0.220 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGS 191 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgS 191 (291)
.+..+.||.+ -+.-++|+-|+=+ +.- |. ..-.+++..|+.++++.|..|++|.|...
T Consensus 148 qQRVAIARAL--~~~P~iilADEPT---gnL----D~-~t~~~V~~ll~~~~~~~g~tii~VTHd~~------------- 204 (226)
T COG1136 148 QQRVAIARAL--INNPKIILADEPT---GNL----DS-KTAKEVLELLRELNKERGKTIIMVTHDPE------------- 204 (226)
T ss_pred HHHHHHHHHH--hcCCCeEEeeCcc---ccC----Ch-HHHHHHHHHHHHHHHhcCCEEEEEcCCHH-------------
Confidence 4566666654 4567889988873 111 11 22356899999999999999999999443
Q ss_pred ccccccCccEEEEE
Q psy4520 192 AKATQESDNVLIIQ 205 (291)
Q Consensus 192 g~IeQdAD~Vi~L~ 205 (291)
+..-||.++++.
T Consensus 205 --lA~~~dr~i~l~ 216 (226)
T COG1136 205 --LAKYADRVIELK 216 (226)
T ss_pred --HHHhCCEEEEEe
Confidence 345677777774
No 335
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=44.50 E-value=1.2e+02 Score=27.17 Aligned_cols=67 Identities=13% Similarity=0.207 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.++++ +.|++++|.-..
T Consensus 152 rv~laral--~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~~--~tiiivsH~~~~-------------- 205 (247)
T TIGR00972 152 RLCIARAL--AVEPEVLLLDEPT--SA-----LDP-IATGKIEELIQELKKK--YTIVIVTHNMQQ-------------- 205 (247)
T ss_pred HHHHHHHH--hcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHhc--CeEEEEecCHHH--------------
Confidence 34444444 3467999999983 11 121 3345678888888773 889999995432
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 206 ~~~~~d~i~~l~~ 218 (247)
T TIGR00972 206 AARISDRTAFFYD 218 (247)
T ss_pred HHHhCCEEEEEEC
Confidence 5577899999875
No 336
>TIGR01630 psiM2_ORF9 phage uncharacterized protein (putative large terminase), C-terminal domain. This model represents the C-terminal region of a set of phage proteins typically about 400-500 amino acids in length, although some members are considerably shorter. An article on Methanobacterium phage Psi-M2 (PubMed:9791169) calls the member from that phage, ORF9, a putative large terminase subunit, and ORF8 a candidate terminase small subunit. Most proteins in this family have an apparent P-loop nucleotide-binding sequence toward the N-terminus.
Probab=44.37 E-value=65 Score=26.60 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=46.5
Q ss_pred CeEEEcC-CCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcC--ceEEEEec
Q psy4520 99 PMYFLTF-HGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSH--CHVTLVIH 175 (291)
Q Consensus 99 pl~i~d~-~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~--VpVilvsh 175 (291)
.+|+.|. .+-.+..++...+..+..+|+.+.++++..+. +....+.|.+.+++.+ +||+-+.+
T Consensus 15 ~~yvld~~~~r~~~~~~~~~i~~~~~~~~~~~~~~E~~~~--------------~~~~~~~l~~~l~~~~~~~~i~~~~~ 80 (142)
T TIGR01630 15 RAYVLDAIYDKEPPPETERLVIRLLNAHRVNLAIIESNQE--------------GKSFGRSLVKILKEKGIRTPARAVYP 80 (142)
T ss_pred CEEEEEEEeccCChHHHHHHHHHHHHHcCCcceeeecccc--------------chHHHHHHHHHHHhhCCCCCceeeCC
Confidence 3777763 34567888888888888999988888776641 1123334444444444 56665543
Q ss_pred cCCcC-CCCccccccccc
Q psy4520 176 PRKEN-EQLTVNSVFGSA 192 (291)
Q Consensus 176 pRk~e-k~p~lsDLrgSg 192 (291)
.+.-+ +--.++.+-++|
T Consensus 81 ~~~K~~Ri~~~~p~~e~G 98 (142)
T TIGR01630 81 SGDKETRILSVAPWVEAG 98 (142)
T ss_pred CCChHHhhhccHHHHHcC
Confidence 22222 222356555555
No 337
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=44.29 E-value=1.6e+02 Score=23.38 Aligned_cols=50 Identities=10% Similarity=-0.112 Sum_probs=33.1
Q ss_pred HhCCCcEEEEeccccccCCCCC-CccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDS-ALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~-~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
+..+ ++++|.+.......... ..........+.+.++.+|++++++++=+
T Consensus 99 ~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~id~ 149 (179)
T PF13472_consen 99 RPHG-PVILVSPPPRGPDPRDPKQDYLNRRIDRYNQAIRELAKKYGVPFIDL 149 (179)
T ss_dssp HTTS-EEEEEE-SCSSSSTTTTHTTCHHHHHHHHHHHHHHHHHHCTEEEEEH
T ss_pred cccC-cEEEecCCCcccccccccchhhhhhHHHHHHHHHHHHHHcCCEEEEC
Confidence 4455 99999988432221100 01345667888999999999999998855
No 338
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=44.20 E-value=79 Score=26.37 Aligned_cols=49 Identities=8% Similarity=-0.034 Sum_probs=31.3
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
.++++|++.+.................+..+.+.++++|++.+|+++=+
T Consensus 95 ~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vd~ 143 (189)
T cd01825 95 PNASILLVGPPDSLQKTGAGRWRTPPGLDAVIAAQRRVAKEEGIAFWDL 143 (189)
T ss_pred CCCeEEEEcCCchhccCCCCCcccCCcHHHHHHHHHHHHHHcCCeEEeH
Confidence 5799999987642211110000112346778899999999999888744
No 339
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=44.10 E-value=1.2e+02 Score=27.11 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
....++.++++.+...-.|+.|||+ + ...+. + .....++...|+.+.+ +.||++.++.
T Consensus 25 ~~~~~l~~~l~~a~~d~~i~~Vvl~-~---~s~gg---~-~~~~~~l~~~l~~~~~--~KpViA~v~g 82 (214)
T cd07022 25 TSYEGIAAAIRAALADPDVRAIVLD-I---DSPGG---E-VAGVFELADAIRAARA--GKPIVAFVNG 82 (214)
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEE-E---eCCCC---c-HHHHHHHHHHHHHHhc--CCCEEEEECC
Confidence 5789999999998877889999986 1 22221 1 2233556777777765 8999988763
No 340
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=43.71 E-value=1.9e+02 Score=25.73 Aligned_cols=68 Identities=15% Similarity=0.246 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+ .|. ..+..+.+.|+.+++ .+..|++++|....
T Consensus 149 rv~laral--~~~p~llilDEPt--~~-----LD~-~~~~~l~~~l~~~~~-~~~tii~~sh~~~~-------------- 203 (242)
T PRK11124 149 RVAIARAL--MMEPQVLLFDEPT--AA-----LDP-EITAQIVSIIRELAE-TGITQVIVTHEVEV-------------- 203 (242)
T ss_pred HHHHHHHH--hcCCCEEEEcCCC--Cc-----CCH-HHHHHHHHHHHHHHH-cCCEEEEEeCCHHH--------------
Confidence 33444443 3467899999983 21 122 335567777887765 48899999995432
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+.||.++++..
T Consensus 204 ~~~~~d~i~~l~~ 216 (242)
T PRK11124 204 ARKTASRVVYMEN 216 (242)
T ss_pred HHHhcCEEEEEEC
Confidence 4456788888864
No 341
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=43.55 E-value=57 Score=29.30 Aligned_cols=63 Identities=14% Similarity=0.128 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCC-ccH--HHHHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSA-LDR--FYMQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~-~~r--~~~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
+.+.+...++.++ ..|+++||.=++ .+.+..... .+. ....+..+..|+++|++++|+|++=.
T Consensus 17 n~~~i~~~i~~a~-~~gadliv~PE~-~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~ 82 (261)
T cd07585 17 NLAVIARWTRKAA-AQGAELVCFPEM-CITGYTHVRALSREAEVPDGPSTQALSDLARRYGLTILAGL 82 (261)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEeccc-ccccccCCcccchhcccCCChHHHHHHHHHHHcCcEEEEec
Confidence 3455666666553 478999998888 444322110 000 11114578899999999999998654
No 342
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=43.52 E-value=1.1e+02 Score=27.68 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
++.+..+.+..-.+-.+|++|++- .+ .+-...+.....-++.|++..++.++++.|.-..
T Consensus 97 e~~~~~~il~~~~~~sLvllDE~~--~g-----T~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l 156 (222)
T cd03287 97 ELSETSHILSNCTSRSLVILDELG--RG-----TSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSL 156 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEccCC--CC-----CChhhHHHHHHHHHHHHHhccCCeEEEEcccHHH
Confidence 444444433333456799999992 11 1212223334556666666678999999995443
No 343
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=43.32 E-value=2.2e+02 Score=24.64 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+ .| ......+.+.|+.++++ +..|++++|.-.. .
T Consensus 119 rv~laral--~~~p~illlDEP~--~~-----LD-~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~-------------~ 174 (194)
T cd03213 119 RVSIALEL--VSNPSLLFLDEPT--SG-----LD-SSSALQVMSLLRRLADT-GRTIICSIHQPSS-------------E 174 (194)
T ss_pred HHHHHHHH--HcCCCEEEEeCCC--cC-----CC-HHHHHHHHHHHHHHHhC-CCEEEEEecCchH-------------H
Confidence 33444444 3567999999983 21 12 13345677888888665 8999999995321 1
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|++++.
T Consensus 175 ~~~~~d~v~~l~~ 187 (194)
T cd03213 175 IFELFDKLLLLSQ 187 (194)
T ss_pred HHHhcCEEEEEeC
Confidence 4456788888853
No 344
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=43.18 E-value=1.3e+02 Score=26.94 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccc
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKA 194 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~I 194 (291)
...+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.+++ +..|++++|.... +
T Consensus 158 v~laral--~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~--~~tiiiisH~~~~--------------~ 211 (251)
T PRK14244 158 LCIARAI--AVKPTMLLMDEPC--SA-----LDP-VATNVIENLIQELKK--NFTIIVVTHSMKQ--------------A 211 (251)
T ss_pred HHHHHHH--hcCCCEEEEeCCC--cc-----CCH-HHHHHHHHHHHHHhc--CCeEEEEeCCHHH--------------H
Confidence 3344443 3467999999983 22 122 234557778887754 7999999995442 5
Q ss_pred cccCccEEEEEc
Q psy4520 195 TQESDNVLIIQQ 206 (291)
Q Consensus 195 eQdAD~Vi~L~R 206 (291)
.+-||.|++|..
T Consensus 212 ~~~~d~i~~l~~ 223 (251)
T PRK14244 212 KKVSDRVAFFQS 223 (251)
T ss_pred HhhcCEEEEEEC
Confidence 567899999965
No 345
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=43.16 E-value=78 Score=28.27 Aligned_cols=62 Identities=10% Similarity=0.050 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHH----HHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRF----YMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~----~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+++.+.+.++.+ ...|+++||.=++- +.+-.. .+.. ...+.+.+.|+.+|++++|.|++-+.
T Consensus 17 n~~~i~~~i~~A-~~~g~dlvv~PE~~-l~g~~~--~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~ 82 (253)
T cd07583 17 NIERVESLIEEA-AAAGADLIVLPEMW-NTGYFL--DDLYELADEDGGETVSFLSELAKKHGVNIVAGSV 82 (253)
T ss_pred HHHHHHHHHHHH-HHCCCCEEEcCCcc-CCCCCh--hhHHhhhcccCchHHHHHHHHHHHcCcEEEeceE
Confidence 345555666554 45699999988873 232211 1111 11245789999999999999996544
No 346
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=43.11 E-value=45 Score=28.04 Aligned_cols=43 Identities=12% Similarity=-0.031 Sum_probs=29.2
Q ss_pred EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 129 HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 129 lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+||||.-+-..... .+ ...+-.-+..|-..|++.|+||+.+.|
T Consensus 2 LlvID~Q~~f~~~~---~~-~~~~~~~i~~l~~~ar~~g~pVi~~~~ 44 (157)
T cd01012 2 LLLVDVQEKLAPAI---KS-FDELINNTVKLAKAAKLLDVPVILTEQ 44 (157)
T ss_pred EEEEeCcHHHHHhh---cC-HHHHHHHHHHHHHHHHhcCCCEEEEee
Confidence 68899775433211 12 344444577777889999999999988
No 347
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=42.99 E-value=1.7e+02 Score=26.04 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccc
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKA 194 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~I 194 (291)
+..++.+ -.+-+++++|+-. .+ -|. .....+.+.|+.+++ .+..|++++|.... +
T Consensus 146 v~laral--~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~-~g~tiii~sH~~~~--------------~ 200 (241)
T PRK10895 146 VEIARAL--AANPKFILLDEPF--AG-----VDP-ISVIDIKRIIEHLRD-SGLGVLITDHNVRE--------------T 200 (241)
T ss_pred HHHHHHH--hcCCCEEEEcCCc--cc-----CCH-HHHHHHHHHHHHHHh-cCCEEEEEEcCHHH--------------H
Confidence 3344443 4567999999983 11 121 334556777777764 58899999995332 4
Q ss_pred cccCccEEEEEcc
Q psy4520 195 TQESDNVLIIQQK 207 (291)
Q Consensus 195 eQdAD~Vi~L~R~ 207 (291)
..-||.|+++++.
T Consensus 201 ~~~~d~v~~l~~G 213 (241)
T PRK10895 201 LAVCERAYIVSQG 213 (241)
T ss_pred HHhcCEEEEEeCC
Confidence 5668999988753
No 348
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=42.71 E-value=1.6e+02 Score=26.39 Aligned_cols=60 Identities=12% Similarity=0.213 Sum_probs=42.0
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+.+++++|+-. .+ .|. .....+.+.|+.+++ +..|++++|.... +.+-||.|+
T Consensus 157 l~~~p~lllLDEP~--~~-----LD~-~~~~~l~~~l~~~~~--~~tiii~tH~~~~--------------~~~~~d~i~ 212 (246)
T PRK14269 157 LAIKPKLLLLDEPT--SA-----LDP-ISSGVIEELLKELSH--NLSMIMVTHNMQQ--------------GKRVADYTA 212 (246)
T ss_pred HhcCCCEEEEcCCc--cc-----CCH-HHHHHHHHHHHHHhC--CCEEEEEecCHHH--------------HHhhCcEEE
Confidence 34577999999983 11 222 345667888888864 7899999995442 456789998
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
+|..
T Consensus 213 ~l~~ 216 (246)
T PRK14269 213 FFHL 216 (246)
T ss_pred EEEC
Confidence 8864
No 349
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=42.46 E-value=2.2e+02 Score=24.91 Aligned_cols=58 Identities=16% Similarity=0.323 Sum_probs=39.0
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .|. .....+.+.|+.+++ +..|++++|.... ++. ||.|+.
T Consensus 166 ~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~--~~tii~~sh~~~~--------------~~~-~d~i~~ 220 (226)
T cd03248 166 IRNPQVLILDEAT--SA-----LDA-ESEQQVQQALYDWPE--RRTVLVIAHRLST--------------VER-ADQILV 220 (226)
T ss_pred hcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHcC--CCEEEEEECCHHH--------------HHh-CCEEEE
Confidence 4567999999983 11 121 335567888888765 5889999995442 433 888888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
|+.
T Consensus 221 l~~ 223 (226)
T cd03248 221 LDG 223 (226)
T ss_pred ecC
Confidence 853
No 350
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=42.44 E-value=48 Score=27.93 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCC-----CCCccHHHHH-----HHHHHHHHHHHHhcCceEEEEec
Q psy4520 111 LKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLS-----DSALDRFYMQ-----DTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~-----~~~~~r~~~~-----~~i~r~LK~~Ake~~VpVilvsh 175 (291)
++.+.+.++.+.+. |+++||.=++-+ .+.. .......... +.....|+.+|++++++|++=..
T Consensus 20 ~~~i~~~~~~a~~~-~~dlvv~PE~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~ 92 (186)
T PF00795_consen 20 LKKILSLIEEAARQ-GADLVVFPEMAL-PGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAGIP 92 (186)
T ss_dssp HHHHHHHHHHHHHT-TESEEEEETTTT-TCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHHHHHC-CCCEEEcCcchh-cccccccccccccchhhhhccccccHHHHHHHHHHHhcCCccccccc
Confidence 55666666666555 999999999843 3220 0001111111 46889999999999999986644
No 351
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=42.11 E-value=1.8e+02 Score=25.58 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -.+-+++++|+-. .+ .|. .....+.+.|+.++++ ..|++++|....
T Consensus 149 rv~la~al--~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~~--~tii~~sH~~~~-------------- 202 (227)
T cd03260 149 RLCLARAL--ANEPEVLLLDEPT--SA-----LDP-ISTAKIEELIAELKKE--YTIVIVTHNMQQ-------------- 202 (227)
T ss_pred HHHHHHHH--hcCCCEEEEeCCC--cc-----CCH-HHHHHHHHHHHHHhhC--cEEEEEeccHHH--------------
Confidence 33444443 3567999999983 21 122 3456688888888877 889999995432
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+.||.|+++..
T Consensus 203 ~~~~~d~i~~l~~ 215 (227)
T cd03260 203 AARVADRTAFLLN 215 (227)
T ss_pred HHHhCCEEEEEeC
Confidence 4567888888864
No 352
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=41.94 E-value=1.7e+02 Score=25.45 Aligned_cols=46 Identities=20% Similarity=0.088 Sum_probs=32.9
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
-.+-+++++|+-. .+ .| ......+.+.|+.++++ ++.|++++|...
T Consensus 143 ~~~p~llllDEPt--~~-----LD-~~~~~~l~~~l~~~~~~-~~tiii~sH~~~ 188 (207)
T PRK13539 143 VSNRPIWILDEPT--AA-----LD-AAAVALFAELIRAHLAQ-GGIVIAATHIPL 188 (207)
T ss_pred hcCCCEEEEeCCc--cc-----CC-HHHHHHHHHHHHHHHHC-CCEEEEEeCCch
Confidence 3467999999983 11 12 23456688888888776 999999999544
No 353
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=41.79 E-value=1.3e+02 Score=24.16 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=36.8
Q ss_pred CeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 99 PMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 99 pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.+.+.|++|......+ .+...+.-.+-++|+|-- + ....+.+......+.+++...++|++++..
T Consensus 51 ~~~i~Dt~G~~~~~~~---~~~~~~~~~~~ilv~d~~-------~--~~s~~~~~~~~~~~~~~~~~~~~piiiv~N 115 (164)
T cd04145 51 ILDILDTAGQEEFSAM---REQYMRTGEGFLLVFSVT-------D--RGSFEEVDKFHTQILRVKDRDEFPMILVGN 115 (164)
T ss_pred EEEEEECCCCcchhHH---HHHHHhhCCEEEEEEECC-------C--HHHHHHHHHHHHHHHHHhCCCCCCEEEEee
Confidence 4677899985333322 222222222334444432 1 133555666777777777778999998874
No 354
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=41.69 E-value=67 Score=28.74 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=30.7
Q ss_pred hCCC--cEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 124 VYDT--GHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 124 ~~gv--~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
+.|+ +-|+||++ +.- +. + ...--++++.++.|...++.|++ ++++||
T Consensus 158 ~~Gi~~~~Ii~DPg-igf--~~---~-~~~~~~~l~~i~~~~~~~~~p~l-~~~srk 206 (210)
T PF00809_consen 158 KAGIPRERIILDPG-IGF--GK---D-PEQNLELLRNIEELKELFGYPIL-VGGSRK 206 (210)
T ss_dssp HTT--GGGEEEETT-TTS--ST---T-HHHHHHHHHTHHHHHTTSSSEBE-EEETTG
T ss_pred HcCCCHHHEeeccc-cCc--CC---C-HHHHHHHHHHHHHHHHhCCCCEE-EEEeCC
Confidence 4899 79999999 432 21 1 12234578888888888888884 455555
No 355
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=41.63 E-value=2.5e+02 Score=24.81 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=41.0
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccccccc-CccEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQE-SDNVL 202 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQd-AD~Vi 202 (291)
-.+-+++++|+-. .+ .|. .....+.+.|+.+++ .+..|++++|.... +..- ||.++
T Consensus 160 ~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~--------------~~~~~~d~i~ 216 (243)
T TIGR01978 160 LLEPKLAILDEID--SG-----LDI-DALKIVAEGINRLRE-PDRSFLIITHYQRL--------------LNYIKPDYVH 216 (243)
T ss_pred hcCCCEEEecCCc--cc-----CCH-HHHHHHHHHHHHHHH-CCcEEEEEEecHHH--------------HHhhcCCeEE
Confidence 4567999999983 11 122 334567788888865 57899999995432 4454 79998
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 217 ~l~~ 220 (243)
T TIGR01978 217 VLLD 220 (243)
T ss_pred EEeC
Confidence 8864
No 356
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=41.57 E-value=1.6e+02 Score=26.34 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=40.6
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLII 204 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L 204 (291)
.+-+++++|+-. .+ .|. ..+..+.+.|+.+++ +..|++++|.... +.+-||.|+++
T Consensus 166 ~~p~llllDEP~--~~-----LD~-~~~~~l~~~l~~~~~--~~tiii~sH~~~~--------------~~~~~d~i~~l 221 (253)
T PRK14267 166 MKPKILLMDEPT--AN-----IDP-VGTAKIEELLFELKK--EYTIVLVTHSPAQ--------------AARVSDYVAFL 221 (253)
T ss_pred cCCCEEEEcCCC--cc-----CCH-HHHHHHHHHHHHHhh--CCEEEEEECCHHH--------------HHhhCCEEEEE
Confidence 466999999983 21 122 345667888888875 5899999995432 45678999888
Q ss_pred Ec
Q psy4520 205 QQ 206 (291)
Q Consensus 205 ~R 206 (291)
..
T Consensus 222 ~~ 223 (253)
T PRK14267 222 YL 223 (253)
T ss_pred EC
Confidence 65
No 357
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=41.54 E-value=83 Score=28.00 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCc-cHH--HHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSAL-DRF--YMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~-~r~--~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
+++.+.+.++.+ .+.|+++||.=++ .+.+...... ... ..-+..++.|+.+|+++++.|++=
T Consensus 17 n~~~i~~~i~~a-~~~ga~lvv~PE~-~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 81 (254)
T cd07576 17 NLARLDEAAARA-AAAGADLLVFPEL-FLTGYNIGDAVARLAEPADGPALQALRAIARRHGIAIVVG 81 (254)
T ss_pred HHHHHHHHHHHH-HHcCCCEEEccCc-cccCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEEEe
Confidence 345555666654 4579999998887 3433221000 000 112357888999999999988865
No 358
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=41.50 E-value=2.2e+02 Score=25.10 Aligned_cols=68 Identities=21% Similarity=0.378 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccc
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKA 194 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~I 194 (291)
+..+|.+ -.+-+++++|+-. .+ .|. ..+..+.+.|+.++++ +..|++++|... ..+
T Consensus 152 l~laral--~~~p~illlDEP~--~g-----LD~-~~~~~~~~~l~~~~~~-~~tiii~sh~~~-------------~~~ 207 (226)
T cd03234 152 VSIAVQL--LWDPKVLILDEPT--SG-----LDS-FTALNLVSTLSQLARR-NRIVILTIHQPR-------------SDL 207 (226)
T ss_pred HHHHHHH--HhCCCEEEEeCCC--cC-----CCH-HHHHHHHHHHHHHHHC-CCEEEEEecCCC-------------HHH
Confidence 3344443 3457999999983 21 121 3356677888887655 899999999531 126
Q ss_pred cccCccEEEEEc
Q psy4520 195 TQESDNVLIIQQ 206 (291)
Q Consensus 195 eQdAD~Vi~L~R 206 (291)
.+-||.|++++.
T Consensus 208 ~~~~d~i~~l~~ 219 (226)
T cd03234 208 FRLFDRILLLSS 219 (226)
T ss_pred HHhCCEEEEEeC
Confidence 778899998864
No 359
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=41.46 E-value=2.6e+02 Score=24.96 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=40.6
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccccccc-CccEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQE-SDNVL 202 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQd-AD~Vi 202 (291)
-.+-+++++|+-. .+ .| ...+..+.+.|+.+++ .+..|++++|.... +.+- ||.|+
T Consensus 167 ~~~p~llllDEPt--~~-----LD-~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~--------------~~~~~~d~i~ 223 (252)
T CHL00131 167 LLDSELAILDETD--SG-----LD-IDALKIIAEGINKLMT-SENSIILITHYQRL--------------LDYIKPDYVH 223 (252)
T ss_pred HcCCCEEEEcCCc--cc-----CC-HHHHHHHHHHHHHHHh-CCCEEEEEecCHHH--------------HHhhhCCEEE
Confidence 4567999999982 21 12 1345567788888875 48999999995442 2333 68888
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
+++.
T Consensus 224 ~l~~ 227 (252)
T CHL00131 224 VMQN 227 (252)
T ss_pred EEeC
Confidence 8865
No 360
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=41.42 E-value=1.3e+02 Score=26.86 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh--cCceEEEEeccC
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR--SHCHVTLVIHPR 177 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake--~~VpVilvshpR 177 (291)
++......+..-.+-.+|+||++.- +.|.......+..-|+.+++. .+..|++++|..
T Consensus 95 el~~l~~~l~~~~~~slvllDE~~~-------gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 95 DLYQVSKALRLATRRSLVLIDEFGK-------GTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred HHHHHHHHHHhCCCCcEEEeccccC-------CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 3433333333345568999999941 123333344455667777764 234677888843
No 361
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=41.29 E-value=1.8e+02 Score=30.43 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
+..++.+ -.+-+++++|+-. .+ .|. .....+.+.|+.+++ .++.|++++|...
T Consensus 152 VaLArAL--~~~P~LLLLDEPT--sg-----LD~-~sr~~LlelL~el~~-~G~TIIIVSHdl~ 204 (549)
T PRK13545 152 LGFAISV--HINPDILVIDEAL--SV-----GDQ-TFTKKCLDKMNEFKE-QGKTIFFISHSLS 204 (549)
T ss_pred HHHHHHH--HhCCCEEEEECCc--cc-----CCH-HHHHHHHHHHHHHHh-CCCEEEEEECCHH
Confidence 3344433 4567999999983 11 121 334567788888764 5899999999543
No 362
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=41.15 E-value=2.5e+02 Score=24.79 Aligned_cols=48 Identities=21% Similarity=0.192 Sum_probs=34.8
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
.-.+-+++++|+-. .+ .|. .....+.+.|+.++++.+..|++++|...
T Consensus 160 l~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~l~~~~~~~g~tvii~sH~~~ 207 (233)
T PRK11629 160 LVNNPRLVLADEPT--GN-----LDA-RNADSIFQLLGELNRLQGTAFLVVTHDLQ 207 (233)
T ss_pred HhcCCCEEEEeCCC--CC-----CCH-HHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 34577999999983 11 121 33466888888888888999999999543
No 363
>cd03596 CLECT_tetranectin_like C-type lectin-like domain (CTLD) of the type found in the tetranectin (TN), cartilage derived C-type lectin (CLECSF1), and stem cell growth factor (SCGF). CLECT_tetranectin_like: C-type lectin-like domain (CTLD) of the type found in the tetranectin (TN), cartilage derived C-type lectin (CLECSF1), and stem cell growth factor (SCGF). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. TN binds to plasminogen and stimulates activation of plasminogen, playing a key role in the regulation of proteolytic processes. The TN CTLD binds two calcium ions. Its calcium free form binds to various kringle-like protein ligands. Two residues involved in the coordination of calcium are critical for the binding of TN to the fourth kringle (K4) domain of plasminogen (Plg K4). TN binds the kringle 1-4 form of angiostatin (AST K1-4). AST K1-4 is a fragment of Plg, commonly found in cancer tissues. TN inhibits the bin
Probab=41.04 E-value=28 Score=28.01 Aligned_cols=41 Identities=22% Similarity=0.509 Sum_probs=31.3
Q ss_pred CCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCcc
Q psy4520 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPA 276 (291)
Q Consensus 233 ~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (291)
|.|.+ ..++|+.|+. ...++.++.++|.+.||.++--.|..
T Consensus 2 ~~g~~--~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~ 42 (129)
T cd03596 2 LKGTK--IHKKCYLVSE-ETKHYHEASEDCIARGGTLATPRDSD 42 (129)
T ss_pred CCCcE--ECCEEEEEec-ccCCHHHHHHHHHhcCCeEecCCCHH
Confidence 55642 2478888885 46789999999999999998765554
No 364
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=40.99 E-value=1.9e+02 Score=25.84 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=41.3
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .|. .....+.+.|+.+++ +..|++++|.... +.+-||.|+
T Consensus 163 l~~~p~llllDEP~--~~-----LD~-~~~~~l~~~l~~~~~--~~tiii~sH~~~~--------------~~~~~d~i~ 218 (252)
T PRK14272 163 LAVEPEILLMDEPT--SA-----LDP-ASTARIEDLMTDLKK--VTTIIIVTHNMHQ--------------AARVSDTTS 218 (252)
T ss_pred HhcCCCEEEEeCCC--cc-----CCH-HHHHHHHHHHHHHhc--CCeEEEEeCCHHH--------------HHHhCCEEE
Confidence 34567999999983 21 121 334567778888864 5899999996543 556789998
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 219 ~l~~ 222 (252)
T PRK14272 219 FFLV 222 (252)
T ss_pred EEEC
Confidence 8865
No 365
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=40.88 E-value=37 Score=30.68 Aligned_cols=43 Identities=26% Similarity=0.505 Sum_probs=36.9
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNP 275 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (291)
+|.| +..|+..|++|.+....+|.++..+|.+.++++++-+|.
T Consensus 85 CP~~-Wi~~~~~Cy~~~~~~~~t~~eA~~~C~~~~s~L~~~~~~ 127 (200)
T PF05473_consen 85 CPKG-WIGYNNSCYRFSNSPKKTWEEARNICAAYNSTLANVNNA 127 (200)
T ss_pred CCcc-ceeeCCEEEEEeCCCCcCHHHHHHHHHhcCCcCCCchhH
Confidence 5555 677889999998877779999999999999999998774
No 366
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=40.67 E-value=23 Score=27.66 Aligned_cols=20 Identities=5% Similarity=0.119 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcCceEE
Q psy4520 152 QDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 152 ~~~i~r~LK~~Ake~~VpVi 171 (291)
.+.+-..++..|+++||||+
T Consensus 25 ~g~~A~~I~~~A~e~~VPi~ 44 (82)
T TIGR00789 25 VGEVAERIIEIAKKHGIPIV 44 (82)
T ss_pred CCHHHHHHHHHHHHcCCCEE
Confidence 35678899999999999998
No 367
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=40.33 E-value=99 Score=23.10 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
+..+.+..+ ..+..++++||+-. .+ .+- -++++.|++.. .++||++++....
T Consensus 31 ~~~~~~~~~----~~~~~d~iiid~~~--~~-----~~~----~~~~~~i~~~~--~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 31 SGEEALELL----KKHPPDLIIIDLEL--PD-----GDG----LELLEQIRQIN--PSIPIIVVTDEDD 82 (112)
T ss_dssp SHHHHHHHH----HHSTESEEEEESSS--SS-----SBH----HHHHHHHHHHT--TTSEEEEEESSTS
T ss_pred CHHHHHHHh----cccCceEEEEEeee--cc-----ccc----ccccccccccc--ccccEEEecCCCC
Confidence 456555444 55669999999762 21 122 24566665555 7999999985333
No 368
>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.
Probab=40.33 E-value=4.2e+02 Score=27.02 Aligned_cols=49 Identities=8% Similarity=0.025 Sum_probs=36.2
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHh----CCCcEEEEecc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYV----YDTGHVIIDNV 135 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~----~gv~lviIDyL 135 (291)
+.+.++.++=.+..+|..+-++. +.+++++++++++.. +|+..|+||.+
T Consensus 212 ~a~~~a~~eTG~~~~ya~NiTa~-~~~em~~ra~~a~~~gg~~~G~~~vMv~~~ 264 (439)
T cd08211 212 DAMRRAQDETGEAKLFSANITAD-DPDEMIARGEYILEAFGPNAGHVAFLVDGY 264 (439)
T ss_pred HHHHHHHHhhCCcceEEecCCCC-CHHHHHHHHHHHHHhcCcccCceEEEECcc
Confidence 44555666666778998776532 589999999997653 46689999988
No 369
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=40.28 E-value=75 Score=27.27 Aligned_cols=46 Identities=15% Similarity=-0.048 Sum_probs=28.5
Q ss_pred EEEEeccccccCCCCCCc-cHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 129 HVIIDNVQFMLGLSDSAL-DRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 129 lviIDyLqlm~~~~~~~~-~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+||||.=+-....+.... .....+ .-+.+|-+.|+..++||+.+.|
T Consensus 2 LlvID~Q~~f~~~~~~~~~~~~~~~-~ni~~l~~~ar~~~~~Vi~~~~ 48 (179)
T cd01015 2 LLVIDLVEGYTQPGSYLAPGIAAAL-ENVQRLLAAARAAGVPVIHTTV 48 (179)
T ss_pred EEEEEeecceeCCCCccccchHHHH-HHHHHHHHHHHHcCCCEEEEEe
Confidence 789998865543221111 222333 3356666678889999999977
No 370
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=40.11 E-value=1.7e+02 Score=24.92 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=39.3
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLII 204 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L 204 (291)
.+-+++++|+-. .+- | ......+.+.|+.++++ +..|++++|.... +..-||.|+++
T Consensus 121 ~~p~llllDEP~--~~L-----D-~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~--------------~~~~~d~v~~l 177 (182)
T cd03215 121 RDPRVLILDEPT--RGV-----D-VGAKAEIYRLIRELADA-GKAVLLISSELDE--------------LLGLCDRILVM 177 (182)
T ss_pred cCCCEEEECCCC--cCC-----C-HHHHHHHHHHHHHHHHC-CCEEEEEeCCHHH--------------HHHhCCEEEEe
Confidence 467899999983 211 2 13345677888888654 8999999996432 44567777777
Q ss_pred E
Q psy4520 205 Q 205 (291)
Q Consensus 205 ~ 205 (291)
.
T Consensus 178 ~ 178 (182)
T cd03215 178 Y 178 (182)
T ss_pred c
Confidence 5
No 371
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=40.06 E-value=1.7e+02 Score=25.91 Aligned_cols=67 Identities=12% Similarity=0.276 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....+|.++ .+-+++++|+-. .+- |. ..+..+.+.|+.+++ +..|++++|....
T Consensus 146 rv~laral~--~~p~llllDEP~--~~L-----D~-~~~~~l~~~l~~~~~--~~tiii~sH~~~~-------------- 199 (237)
T cd03252 146 RIAIARALI--HNPRILIFDEAT--SAL-----DY-ESEHAIMRNMHDICA--GRTVIIIAHRLST-------------- 199 (237)
T ss_pred HHHHHHHHh--hCCCEEEEeCCc--ccC-----CH-HHHHHHHHHHHHhcC--CCEEEEEeCCHHH--------------
Confidence 344445443 467999999983 211 21 334567888888864 8899999994432
Q ss_pred ccccCccEEEEEcc
Q psy4520 194 ATQESDNVLIIQQK 207 (291)
Q Consensus 194 IeQdAD~Vi~L~R~ 207 (291)
++ .||.|++++.-
T Consensus 200 ~~-~~d~v~~l~~G 212 (237)
T cd03252 200 VK-NADRIIVMEKG 212 (237)
T ss_pred HH-hCCEEEEEECC
Confidence 44 38999999753
No 372
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.00 E-value=1.6e+02 Score=27.24 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=44.3
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-..-+++|+|+-. .+ .| ......+...|+.++++.+..|++++|.-.. ++ .||.++
T Consensus 158 l~~~P~llllDEPt--~g-----LD-~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~--------------~~-~~d~i~ 214 (282)
T PRK13640 158 LAVEPKIIILDEST--SM-----LD-PAGKEQILKLIRKLKKKNNLTVISITHDIDE--------------AN-MADQVL 214 (282)
T ss_pred HHcCCCEEEEECCc--cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEecCHHH--------------HH-hCCEEE
Confidence 34567999999983 11 12 2445678899999999889999999996432 33 489999
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 215 ~l~~ 218 (282)
T PRK13640 215 VLDD 218 (282)
T ss_pred EEEC
Confidence 9864
No 373
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.87 E-value=2.1e+02 Score=24.95 Aligned_cols=61 Identities=20% Similarity=0.189 Sum_probs=41.6
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec-cCCcCCCCccccccccccccccCccEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
-.+-+++++|+-. .+ .| ......+.+.|+.++++.+..+++++| ... .+...||.++
T Consensus 134 ~~~p~llllDEPt--~~-----LD-~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~--------------~~~~~~d~i~ 191 (202)
T cd03233 134 VSRASVLCWDNST--RG-----LD-SSTALEILKCIRTMADVLKTTTFVSLYQASD--------------EIYDLFDKVL 191 (202)
T ss_pred hhCCCEEEEcCCC--cc-----CC-HHHHHHHHHHHHHHHHhCCCEEEEEEcCCHH--------------HHHHhCCeEE
Confidence 3467899999983 11 12 244567899999999988887776655 322 2456788888
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 192 ~l~~ 195 (202)
T cd03233 192 VLYE 195 (202)
T ss_pred EEEC
Confidence 8864
No 374
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=39.86 E-value=50 Score=30.34 Aligned_cols=57 Identities=5% Similarity=-0.116 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+++.+++.++.++ ..|.++||.=++ .+.+.. ...+..++.|+.+|++++++|++=+.
T Consensus 24 nl~~~~~~i~~a~-~~ga~lvvfPE~-~l~g~~-------~~~~~~~~~l~~~ak~~~i~ii~G~~ 80 (270)
T cd07571 24 TLDRYLDLTRELA-DEKPDLVVWPET-ALPFDL-------QRDPDALARLARAARAVGAPLLTGAP 80 (270)
T ss_pred HHHHHHHHHhhcc-cCCCCEEEecCC-cCCccc-------ccCHHHHHHHHHHHHhcCCeEEEeee
Confidence 3555666665543 457999997776 333211 12356789999999999999997655
No 375
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=39.70 E-value=2.1e+02 Score=26.18 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccc
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKA 194 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~I 194 (291)
...+|.+ -.+-+++|+|+-. .+ .|. ..+..+.+.|+.+++ +..|++++|.... +
T Consensus 177 v~laral--~~~p~lllLDEPt--~g-----LD~-~~~~~l~~~L~~~~~--~~tiiivtH~~~~--------------~ 230 (272)
T PRK14236 177 LVIARAI--AIEPEVLLLDEPT--SA-----LDP-ISTLKIEELITELKS--KYTIVIVTHNMQQ--------------A 230 (272)
T ss_pred HHHHHHH--HCCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHh--CCeEEEEeCCHHH--------------H
Confidence 3344443 3577999999983 21 122 345668888888875 5789999996542 5
Q ss_pred cccCccEEEEEc
Q psy4520 195 TQESDNVLIIQQ 206 (291)
Q Consensus 195 eQdAD~Vi~L~R 206 (291)
..-||.|+++++
T Consensus 231 ~~~~d~i~~l~~ 242 (272)
T PRK14236 231 ARVSDYTAFMYM 242 (272)
T ss_pred HhhCCEEEEEEC
Confidence 567899998875
No 376
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.70 E-value=1.6e+02 Score=25.53 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=40.0
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-++++.|+-. .+ -| ...+..+.+.|+.+++ +..|++++|.... +.+-||.+++
T Consensus 146 ~~~p~llllDEPt--~~-----LD-~~~~~~l~~~l~~~~~--~~tii~vsH~~~~--------------~~~~~d~i~~ 201 (211)
T cd03264 146 VGDPSILIVDEPT--AG-----LD-PEERIRFRNLLSELGE--DRIVILSTHIVED--------------VESLCNQVAV 201 (211)
T ss_pred hcCCCEEEEcCCc--cc-----CC-HHHHHHHHHHHHHHhC--CCEEEEEcCCHHH--------------HHHhCCEEEE
Confidence 4567999999883 11 12 2345567888888876 3789999995542 4567888888
Q ss_pred EE
Q psy4520 204 IQ 205 (291)
Q Consensus 204 L~ 205 (291)
+.
T Consensus 202 l~ 203 (211)
T cd03264 202 LN 203 (211)
T ss_pred EE
Confidence 85
No 377
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=39.67 E-value=1.4e+02 Score=26.99 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHH-HHHHHHhcCceEEEEeccCC
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQE-FRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~-LK~~Ake~~VpVilvshpRk 178 (291)
.++.+..+.+..-..-.+|+||++- .+.. - ..-..+... ++.|.+..++.++++.|...
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~--~Gt~-----~-~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELG--RGTS-----T-HDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeccc--CCCC-----c-hHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 3444444444333456799999982 2211 1 111223334 66666656999999999443
No 378
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=39.62 E-value=2e+02 Score=26.14 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=40.3
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLII 204 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L 204 (291)
.+-+++++|+-.- + .|. .....+.+.|+++++ ++.|++++|.... +.+-||.|+++
T Consensus 178 ~~p~llllDEPt~--g-----LD~-~~~~~l~~~l~~l~~--~~tiiivth~~~~--------------~~~~~d~i~~l 233 (265)
T PRK14252 178 TDPEILLFDEPTS--A-----LDP-IATASIEELISDLKN--KVTILIVTHNMQQ--------------AARVSDYTAYM 233 (265)
T ss_pred cCCCEEEEeCCCc--c-----CCH-HHHHHHHHHHHHHHh--CCEEEEEecCHHH--------------HHHhCCEEEEE
Confidence 4678999999832 1 121 334567778888865 5899999996543 55678999888
Q ss_pred Ec
Q psy4520 205 QQ 206 (291)
Q Consensus 205 ~R 206 (291)
..
T Consensus 234 ~~ 235 (265)
T PRK14252 234 YM 235 (265)
T ss_pred EC
Confidence 64
No 379
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=39.61 E-value=1.7e+02 Score=26.48 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....+|.+ -.+-+++++|+-. .+- |. .....+.+.|+.+++ ++.|++++|....
T Consensus 162 rv~laral--~~~p~llllDEPt--~~L-----D~-~~~~~l~~~l~~l~~--~~tiiivsH~~~~-------------- 215 (258)
T PRK14268 162 RLCIARTL--AVKPKIILFDEPT--SAL-----DP-ISTARIEDLIMNLKK--DYTIVIVTHNMQQ-------------- 215 (258)
T ss_pred HHHHHHHH--HcCCCEEEEeCCC--ccc-----CH-HHHHHHHHHHHHHhh--CCEEEEEECCHHH--------------
Confidence 33444443 3456999999983 211 21 334557777887764 6899999995442
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|++++.
T Consensus 216 ~~~~~d~i~~l~~ 228 (258)
T PRK14268 216 AARISDYTGFFLM 228 (258)
T ss_pred HHHhCCEEEEEEC
Confidence 4466899998864
No 380
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=39.55 E-value=65 Score=30.09 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=28.4
Q ss_pred HHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 120 HAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 120 ~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
.+.++|++++|| ..+.++. +-+-.|+ .-|+++||||++|..|.-
T Consensus 191 al~~~~~i~~lV------tK~SG~~--------Gg~~eKi-~AA~~lgi~vivI~RP~~ 234 (256)
T TIGR00715 191 ALLREYRIDAVV------TKASGEQ--------GGELEKV-KAAEALGINVIRIARPQT 234 (256)
T ss_pred HHHHHcCCCEEE------EcCCCCc--------cchHHHH-HHHHHcCCcEEEEeCCCC
Confidence 456778988877 2222221 1123334 789999999999987753
No 381
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=39.52 E-value=1.6e+02 Score=26.45 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 108 PQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 108 ~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
..++.++.+.++.+...-.|+.|||+- .+.+. ......++-+.|+.|.+ .+.||++.+.
T Consensus 28 ~~~~~~l~~~l~~a~~d~~ik~vvL~~----~s~gg----~~~~~~el~~~i~~~~~-~~kpVia~~~ 86 (222)
T cd07018 28 ELSLRDLLEALEKAAEDDRIKGIVLDL----DGLSG----GLAKLEELRQALERFRA-SGKPVIAYAD 86 (222)
T ss_pred CccHHHHHHHHHHHhcCCCeEEEEEEC----CCCCC----CHHHHHHHHHHHHHHHH-hCCeEEEEeC
Confidence 468999999999998888899999762 22221 22335567777777744 7899998765
No 382
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.52 E-value=1.4e+02 Score=24.67 Aligned_cols=62 Identities=6% Similarity=0.037 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHH-----HhCCCcEEEEeccccccCCCC--CCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 110 PLKLVMEAVEHAM-----YVYDTGHVIIDNVQFMLGLSD--SALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 110 ~i~~i~~~~r~~~-----~~~gv~lviIDyLqlm~~~~~--~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
++++..+.++.++ ...+..+|++-+.-....... ........+....+.++.+|++.+|+++
T Consensus 83 ~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~i 151 (191)
T cd01834 83 GLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEANEDPLPDGAEYNANLAAYADAVRELAAENGVAFV 151 (191)
T ss_pred cHHHHHHHHHHHHHHHHcccCCCcEEEECCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 4444444444433 234688888876522111100 0012245677788999999999999988
No 383
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=39.28 E-value=2.6e+02 Score=27.34 Aligned_cols=91 Identities=11% Similarity=0.120 Sum_probs=56.5
Q ss_pred hhHHHHHHhhcCCCeEEE----cCCCC---------CCHHHHHHHHHHHHH-hCCCcEEEEeccccccC-CCCCCccHHH
Q psy4520 86 DKFDEYSDWFKTLPMYFL----TFHGP---------QPLKLVMEAVEHAMY-VYDTGHVIIDNVQFMLG-LSDSALDRFY 150 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~----d~~g~---------~~i~~i~~~~r~~~~-~~gv~lviIDyLqlm~~-~~~~~~~r~~ 150 (291)
.++.+.+.. ..+|+++. +..+. ...+-|...+|.+.. ++|+|++=+.|---|.. .+......-.
T Consensus 146 ~rv~~ec~~-~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~ 224 (340)
T PRK12858 146 ERVGAECRA-NDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAY 224 (340)
T ss_pred HHHHHHHHH-cCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccc
Confidence 344444443 57888773 22111 356789999998876 89999999888632211 1100011122
Q ss_pred HHHHHHHHHHHHHHhcCceEEEEeccC
Q psy4520 151 MQDTIIQEFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 151 ~~~~i~r~LK~~Ake~~VpVilvshpR 177 (291)
.+.+....++..+.-.++|+++++-+.
T Consensus 225 ~~~~~~~~f~~~~~a~~~P~vvlsgG~ 251 (340)
T PRK12858 225 TQEEAFKLFREQSDATDLPFIFLSAGV 251 (340)
T ss_pred cHHHHHHHHHHHHhhCCCCEEEECCCC
Confidence 345566778888888999999997754
No 384
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=39.26 E-value=68 Score=37.01 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec-cCCcCCCCcccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRKENEQLTVNSVFGS 191 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk~ek~p~lsDLrgS 191 (291)
.....++.+. .+-+++++|+-. .+ .|. .....+++.|+.+|++.+..|+++.| |..
T Consensus 216 kRvsIA~aL~--~~p~vlllDEPT--sg-----LD~-~~~~~i~~~L~~la~~~g~tvii~~Hq~~~------------- 272 (1394)
T TIGR00956 216 KRVSIAEASL--GGAKIQCWDNAT--RG-----LDS-ATALEFIRALKTSANILDTTPLVAIYQCSQ------------- 272 (1394)
T ss_pred hHHHHHHHHH--hCCCEEEEeCCC--CC-----cCH-HHHHHHHHHHHHHHHhcCCEEEEEecCCCH-------------
Confidence 3445555544 356899999983 22 122 34567899999999999999999988 543
Q ss_pred ccccccCccEEEEEcc
Q psy4520 192 AKATQESDNVLIIQQK 207 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R~ 207 (291)
.+.+.+|.|++|+.-
T Consensus 273 -~i~~l~D~v~~L~~G 287 (1394)
T TIGR00956 273 -DAYELFDKVIVLYEG 287 (1394)
T ss_pred -HHHHhhceEEEEeCC
Confidence 256778999999753
No 385
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=39.19 E-value=88 Score=30.14 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHH---hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 109 QPLKLVMEAVEHAMY---VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~---~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.++++|++..+.+.. ..+-++||||+.+-|. . ..+..+.+-|.... .++.+++++|.
T Consensus 93 I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------~-~a~naLLk~LEep~--~~~~~Ilvth~ 152 (325)
T PRK08699 93 IKIDAVREIIDNVYLTSVRGGLRVILIHPAESMN--------L-QAANSLLKVLEEPP--PQVVFLLVSHA 152 (325)
T ss_pred cCHHHHHHHHHHHhhCcccCCceEEEEechhhCC--------H-HHHHHHHHHHHhCc--CCCEEEEEeCC
Confidence 579999988777653 3568899999996442 1 44566777777765 36889999993
No 386
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=39.15 E-value=2.5e+02 Score=24.14 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=33.4
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
.-.+-+++++|+-. .+ .|. ..+..+.+.|+.++++ +..|++++|...
T Consensus 149 l~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~~-~~tii~~sh~~~ 195 (206)
T TIGR03608 149 ILKDPPLILADEPT--GS-----LDP-KNRDEVLDLLLELNDE-GKTIIIVTHDPE 195 (206)
T ss_pred HHcCCCEEEEeCCc--CC-----CCH-HHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 34567999999983 11 121 4456788888888875 899999999543
No 387
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=39.05 E-value=2e+02 Score=25.53 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=40.9
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccccccc-CccE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQE-SDNV 201 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQd-AD~V 201 (291)
.-.+-+++++|+-. .+ .|. ..+..+.+.|+.+++ .+..|++++|.... +.+- ||.|
T Consensus 160 l~~~p~illLDEPt--~~-----LD~-~~~~~l~~~l~~l~~-~~~tiii~sH~~~~--------------~~~~~~d~i 216 (248)
T PRK09580 160 AVLEPELCILDESD--SG-----LDI-DALKIVADGVNSLRD-GKRSFIIVTHYQRI--------------LDYIKPDYV 216 (248)
T ss_pred HHcCCCEEEEeCCC--cc-----CCH-HHHHHHHHHHHHHHh-CCCEEEEEeCCHHH--------------HHhhhCCEE
Confidence 34567999999983 21 122 345677888888865 48899999996442 3333 7888
Q ss_pred EEEEc
Q psy4520 202 LIIQQ 206 (291)
Q Consensus 202 i~L~R 206 (291)
++++.
T Consensus 217 ~~l~~ 221 (248)
T PRK09580 217 HVLYQ 221 (248)
T ss_pred EEEEC
Confidence 88753
No 388
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=39.01 E-value=1e+02 Score=28.76 Aligned_cols=61 Identities=8% Similarity=-0.025 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHh-CCCcEEEEeccccccCCCCCCccHHHH-----HHHHHHHHHHHHHhcCceEEE
Q psy4520 110 PLKLVMEAVEHAMYV-YDTGHVIIDNVQFMLGLSDSALDRFYM-----QDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~-~gv~lviIDyLqlm~~~~~~~~~r~~~-----~~~i~r~LK~~Ake~~VpVil 172 (291)
+++.+.+.++.++.. .|+++||.=++- +.+..- ....... -+..++.|+.+|++++|.|++
T Consensus 22 Nl~~~~~~i~~A~~~~~gadLvvfPE~~-ltGy~~-~~~~~~~~a~~~~~~~~~~l~~lA~~~~i~i~~ 88 (291)
T cd07565 22 NAERIADMVEGTKRGLPGMDLIVFPEYS-TQGLMY-DKWTMDETACTVPGPETDIFAEACKEAKVWGVF 88 (291)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEeCCcc-cccCCC-CcchhhhhccCCCChhHHHHHHHHHHCCeEEEE
Confidence 456666667766553 689999988873 333210 0011111 135788999999999998875
No 389
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=38.78 E-value=1e+02 Score=26.72 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccC-CCCCCccH-HHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLG-LSDSALDR-FYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~-~~~~~~~r-~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
=.+.++..+...|+.+.++|-=.+... ......+. +..-..+.+.+..+|+++|+.+++..|+..
T Consensus 40 ~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~d 106 (202)
T cd01990 40 ELEEAKRLAKEIGIRHEVIETDELDDPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNAD 106 (202)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCccccHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 345666778899999999873111000 00000111 111123567788999999999999999654
No 390
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=38.63 E-value=26 Score=28.74 Aligned_cols=59 Identities=10% Similarity=0.235 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHH-HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 109 QPLKLVMEAVEHAM-YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 109 ~~i~~i~~~~r~~~-~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.|.+.+...++... .-..+++||||+.+.+... ........+.+.++... ++++++++-
T Consensus 101 ~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-----~~~~~~~~i~~~~~~~~---~~~~i~~SA 160 (169)
T PF00270_consen 101 TTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-----TFRAMLKSILRRLKRFK---NIQIILLSA 160 (169)
T ss_dssp EEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-----THHHHHHHHHHHSHTTT---TSEEEEEES
T ss_pred cCcchhhccccccccccccceeeccCcccccccc-----cHHHHHHHHHHHhcCCC---CCcEEEEee
Confidence 35666666655410 1233899999999876532 22234444555544443 799988864
No 391
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=38.42 E-value=1.5e+02 Score=28.52 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=46.1
Q ss_pred CeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccc-ccc---CCCCCCccHHHHHHHHHHHHHHHHHhcC-ceEEEE
Q psy4520 99 PMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQ-FML---GLSDSALDRFYMQDTIIQEFRAFASRSH-CHVTLV 173 (291)
Q Consensus 99 pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLq-lm~---~~~~~~~~r~~~~~~i~r~LK~~Ake~~-VpVilv 173 (291)
.++++. |.....+..+..+.++..+|+.+.+||.=. ++. +.......++.-=..+.+.+..+|++++ +..++.
T Consensus 46 av~vd~--G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~fl~~l~~v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~ 123 (311)
T TIGR00884 46 CVFVDH--GLLRKGEAEQVVKTFGDRLGLNLVYVDAKERFLSALKGVTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQ 123 (311)
T ss_pred EEEEeC--CCCChHHHHHHHHHHHHHcCCcEEEEeCcHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Confidence 466654 333456666666666668999999998632 111 1111111122112235677999999999 888888
Q ss_pred eccC
Q psy4520 174 IHPR 177 (291)
Q Consensus 174 shpR 177 (291)
.|+.
T Consensus 124 Gt~~ 127 (311)
T TIGR00884 124 GTIY 127 (311)
T ss_pred CCCC
Confidence 7754
No 392
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.01 E-value=2e+02 Score=26.49 Aligned_cols=67 Identities=10% Similarity=0.123 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++|+|+-. .+ .| ...+..+.+.|+.+++ +..|++++|....
T Consensus 169 rv~LAraL--~~~p~lllLDEPt--~~-----LD-~~~~~~l~~~L~~~~~--~~tiii~sH~~~~-------------- 222 (274)
T PRK14265 169 RLCIARAI--AMKPDVLLMDEPC--SA-----LD-PISTRQVEELCLELKE--QYTIIMVTHNMQQ-------------- 222 (274)
T ss_pred HHHHHHHH--hhCCCEEEEeCCc--cc-----CC-HHHHHHHHHHHHHHhc--CCEEEEEeCCHHH--------------
Confidence 33444443 3567999999983 11 12 2445677888888865 5889999996543
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+..-||.+++|++
T Consensus 223 ~~~~~d~i~~l~~ 235 (274)
T PRK14265 223 ASRVADWTAFFNT 235 (274)
T ss_pred HHHhCCEEEEEec
Confidence 5678999999974
No 393
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=37.99 E-value=1.8e+02 Score=25.79 Aligned_cols=61 Identities=11% Similarity=0.023 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 107 GPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 107 g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+.++..++.+.++.+...-.|+.||++ + ...+. + .....++...|+.|. ..+.||++.++.
T Consensus 19 ~~~~~~~l~~~l~~a~~d~~v~~ivL~-~---~s~Gg---~-~~~~~~~~~~l~~~~-~~~kpVia~v~g 79 (211)
T cd07019 19 GNVGGDTTAAQIRDARLDPKVKAIVLR-V---NSPGG---S-VTASEVIRAELAAAR-AAGKPVVVSAGG 79 (211)
T ss_pred CccCHHHHHHHHHHHhhCCCceEEEEE-E---cCCCc---C-HHHHHHHHHHHHHHH-hCCCCEEEEECC
Confidence 346789999999999888899999997 2 11221 1 122234455566654 358999988873
No 394
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=37.96 E-value=2.1e+02 Score=26.24 Aligned_cols=67 Identities=12% Similarity=0.172 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+. |. .....+.+.|+.+++ +..|++++|....
T Consensus 175 rv~laraL--~~~p~lllLDEPt--~~L-----D~-~~~~~l~~~l~~~~~--~~tiiivsH~~~~-------------- 228 (271)
T PRK14238 175 RLCIARCL--AIEPDVILMDEPT--SAL-----DP-ISTLKVEELVQELKK--DYSIIIVTHNMQQ-------------- 228 (271)
T ss_pred HHHHHHHH--HcCCCEEEEeCCC--CcC-----CH-HHHHHHHHHHHHHHc--CCEEEEEEcCHHH--------------
Confidence 33444443 3567899999983 211 21 334567778888865 5899999995543
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+..-||.+++++.
T Consensus 229 i~~~~d~i~~l~~ 241 (271)
T PRK14238 229 AARISDKTAFFLN 241 (271)
T ss_pred HHHhCCEEEEEEC
Confidence 5567888888865
No 395
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=37.90 E-value=2.3e+02 Score=25.41 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.+++ +..|++++|....
T Consensus 157 rv~laral--~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~--~~tvii~tH~~~~-------------- 210 (253)
T PRK14242 157 RLCIARAL--AVEPEVLLMDEPA--SA-----LDP-IATQKIEELIHELKA--RYTIIIVTHNMQQ-------------- 210 (253)
T ss_pred HHHHHHHH--hcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHhc--CCeEEEEEecHHH--------------
Confidence 33444443 3467999999983 21 122 334567777887754 6899999995432
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|++|..
T Consensus 211 ~~~~~d~v~~l~~ 223 (253)
T PRK14242 211 AARVSDVTAFFYM 223 (253)
T ss_pred HHHhCCEEEEEEC
Confidence 4567899999964
No 396
>cd00037 CLECT C-type lectin (CTL)/C-type lectin-like (CTLD) domain. CLECT: C-type lectin (CTL)/C-type lectin-like (CTLD) domain; protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. This group is chiefly comprised of eukaryotic CTLDs, but contains some, as yet functionally uncharacterized, bacterial CTLDs. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces, including CaCO3 and ice. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. For example: mannose-binding lectin and lung surfactant proteins A and D bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, and apoptotic cells) and mediate functions associated with killing and phagocytosis; P (platlet)-, E (endothelial)-, and L (leukocyte)- selectins (sels) mediate the initia
Probab=37.84 E-value=19 Score=26.69 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=26.0
Q ss_pred CCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 252 PMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
..+|.++..+|.+.||.++...|+.-.-||
T Consensus 9 ~~~~~~A~~~C~~~~~~L~~~~~~~e~~~i 38 (116)
T cd00037 9 KLTWEEAQEYCRSLGGHLASIHSEEENDFL 38 (116)
T ss_pred ccCHHHHHHHHHHcCCEEcccCCHHHHHHH
Confidence 889999999999999999999987655544
No 397
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=37.83 E-value=2.7e+02 Score=24.06 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=32.0
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
-.+-+++++|+-. .+ .| ...+..+.+.|+.++++ ++.|++++|...
T Consensus 143 ~~~p~~lilDEP~--~~-----LD-~~~~~~l~~~l~~~~~~-~~tiii~sh~~~ 188 (200)
T PRK13540 143 MSKAKLWLLDEPL--VA-----LD-ELSLLTIITKIQEHRAK-GGAVLLTSHQDL 188 (200)
T ss_pred hcCCCEEEEeCCC--cc-----cC-HHHHHHHHHHHHHHHHc-CCEEEEEeCCch
Confidence 4567999999983 21 12 24456688888887654 899999999543
No 398
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=37.80 E-value=1.9e+02 Score=25.95 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=40.2
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+- |. ..+..+.+.|+.+++ +..|++++|.... +.+-||.|+
T Consensus 164 l~~~p~lllLDEP~--~gL-----D~-~~~~~l~~~l~~~~~--~~tvii~sh~~~~--------------~~~~~d~v~ 219 (253)
T PRK14261 164 LAVNPEVILMDEPC--SAL-----DP-IATAKIEDLIEDLKK--EYTVIIVTHNMQQ--------------AARVSDYTG 219 (253)
T ss_pred HhcCCCEEEEeCCc--ccC-----CH-HHHHHHHHHHHHHhh--CceEEEEEcCHHH--------------HHhhCCEEE
Confidence 34567999999983 221 21 334456777777765 4799999995442 556788888
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++.+
T Consensus 220 ~l~~ 223 (253)
T PRK14261 220 FMYL 223 (253)
T ss_pred EEEC
Confidence 8865
No 399
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=37.80 E-value=1.2e+02 Score=29.21 Aligned_cols=52 Identities=8% Similarity=0.063 Sum_probs=36.0
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.+|+ -+++++++.--...+.+..+..+....+.+.|+++-+++|+++++|.|
T Consensus 267 ~~yd-l~~l~~p~~~~~~D~~R~~~~~~~R~~~~~ll~~~l~~~G~~~v~Vtg 318 (325)
T TIGR01526 267 YPFD-LTLLLKPNTEWVDDGLRSLGSQKQRQEFQQLLKKLLDEYGVPFVVIES 318 (325)
T ss_pred cCCC-EEEECCCCCCCccCCcccCchHHHHHHHHHHHHHHHHHcCCcEEEEeC
Confidence 5566 677778773222222233344445677888999999999999999999
No 400
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=37.57 E-value=1.2e+02 Score=28.26 Aligned_cols=64 Identities=13% Similarity=0.122 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCC--------CCccHHHH--------HHHHHHHHHHHHHhcCceEEEE
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSD--------SALDRFYM--------QDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~--------~~~~r~~~--------~~~i~r~LK~~Ake~~VpVilv 173 (291)
+++.+...++.+ ...|+++||.=++- +.+-.. .+.+.+.. -+.+++.|+.+|+++++.|++=
T Consensus 18 nl~~~~~~i~~A-~~~ga~lvvfPE~~-l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G 95 (297)
T cd07564 18 TVEKACRLIEEA-AANGAQLVVFPEAF-IPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELERLAEAARENGIYVVLG 95 (297)
T ss_pred HHHHHHHHHHHH-HHCCCCEEEecccc-ccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHHHHHHHHHcCcEEEEe
Confidence 345555666654 34789999998873 322110 00011111 1357899999999999999865
Q ss_pred ec
Q psy4520 174 IH 175 (291)
Q Consensus 174 sh 175 (291)
..
T Consensus 96 ~~ 97 (297)
T cd07564 96 VS 97 (297)
T ss_pred eE
Confidence 43
No 401
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=37.56 E-value=2.1e+02 Score=26.06 Aligned_cols=67 Identities=10% Similarity=0.158 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-.- + .|. .....+.+.|+.+++ +..|++++|....
T Consensus 171 rv~laral--~~~p~lllLDEPt~--~-----LD~-~~~~~l~~~L~~l~~--~~tiiivtH~~~~-------------- 224 (267)
T PRK14235 171 RLCIARAI--AVSPEVILMDEPCS--A-----LDP-IATAKVEELIDELRQ--NYTIVIVTHSMQQ-------------- 224 (267)
T ss_pred HHHHHHHH--HcCCCEEEEeCCCc--C-----CCH-HHHHHHHHHHHHHhc--CCeEEEEEcCHHH--------------
Confidence 33344443 45679999999831 1 121 334567778888865 5789999996442
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++.+
T Consensus 225 ~~~~~d~v~~l~~ 237 (267)
T PRK14235 225 AARVSQRTAFFHL 237 (267)
T ss_pred HHhhCCEEEEEEC
Confidence 5577899999875
No 402
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=37.37 E-value=1.2e+02 Score=27.30 Aligned_cols=63 Identities=11% Similarity=0.190 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCc---cHHH--HHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSAL---DRFY--MQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~---~r~~--~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
+++.+.+.++.++ +.|+++||.=++-+ .+...... .++. ..+.+.+.|+.+|++++++|++=.
T Consensus 18 n~~~~~~~i~~A~-~~gadlivfPE~~l-~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~ 85 (258)
T cd07578 18 NIERLLALCEEAA-RAGARLIVTPEMAT-TGYCWYDRAEIAPFVEPIPGPTTARFAELAREHDCYIVVGL 85 (258)
T ss_pred HHHHHHHHHHHHH-hCCCCEEEcccccc-cCCCcCCHHHhhhhcccCCCHHHHHHHHHHHHcCcEEEEec
Confidence 4555666666654 47899999888732 32210000 0010 112468899999999999888643
No 403
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=37.31 E-value=56 Score=28.68 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=36.2
Q ss_pred CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEE
Q psy4520 126 DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQ 205 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~ 205 (291)
++++|+||+-|+.. .+ |. .|...+.+.|++|++-.....-...| ..++..+--.||.|.-|.
T Consensus 76 ~~dvI~IDEaQFf~--~~-----------i~-~l~~~~~~~g~~Vi~~GL~~df~~~~----F~~~~~Ll~~Ad~i~kl~ 137 (176)
T PF00265_consen 76 DYDVIGIDEAQFFD--EQ-----------IV-QLVEILANKGIPVICAGLDTDFRGEP----FGGSPRLLPLADKITKLK 137 (176)
T ss_dssp TCSEEEESSGGGST--TT-----------HH-HHHHHHHHTT-EEEEEEESB-TTSSB-----TTHHHHHHH-SEEEEE-
T ss_pred CCCEEEEechHhhH--HH-----------HH-HHHHHHHhCCCeEEEEeeCCccccCc----chhHHHHHhhCCeEEEec
Confidence 38999999999974 11 22 24444558999999876633322222 233444456789888775
No 404
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=37.29 E-value=76 Score=30.16 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCcc--HH-------------------HHHHHHHHHHHHHHHhcCc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALD--RF-------------------YMQDTIIQEFRAFASRSHC 168 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~--r~-------------------~~~~~i~r~LK~~Ake~~V 168 (291)
+++.+...++.+ .+.|.++||.=++- +.+....... .+ ..-+..++.|+.+||+++|
T Consensus 25 Nl~~i~~~i~~A-~~~gadLIVfPE~~-ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lAr~~~i 102 (299)
T cd07567 25 NLDIYEEIIKSA-AKQGADIIVFPEDG-LTGFIFTRFVIYPFLEDVPDPEVNWNPCLDPDRFDYTEVLQRLSCAARENSI 102 (299)
T ss_pred HHHHHHHHHHHH-HHcCCCEEEccccc-cCCCCCCccccCchhcccccccccccccccccccCchHHHHHHHHHHHHhCe
Confidence 455666666664 35689999987773 3332100000 00 0124678999999999999
Q ss_pred eEEEE
Q psy4520 169 HVTLV 173 (291)
Q Consensus 169 pVilv 173 (291)
+|++-
T Consensus 103 ~Iv~G 107 (299)
T cd07567 103 YVVAN 107 (299)
T ss_pred EEEec
Confidence 99863
No 405
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=37.27 E-value=1.4e+02 Score=28.22 Aligned_cols=62 Identities=15% Similarity=0.293 Sum_probs=44.1
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
..-.-++++||++ +-. ++ . .-+......|..+.++. .-|++|+|.-. .|.|-||.++
T Consensus 162 ~~~~pdILllDEv-lav--GD---~--~F~~K~~~rl~e~~~~~-~tiv~VSHd~~--------------~I~~~Cd~~i 218 (249)
T COG1134 162 THVEPDILLLDEV-LAV--GD---A--AFQEKCLERLNELVEKN-KTIVLVSHDLG--------------AIKQYCDRAI 218 (249)
T ss_pred hhcCCCEEEEehh-hhc--CC---H--HHHHHHHHHHHHHHHcC-CEEEEEECCHH--------------HHHHhcCeeE
Confidence 3345689999999 322 21 2 22355677778886666 88999999643 4889999999
Q ss_pred EEEcc
Q psy4520 203 IIQQK 207 (291)
Q Consensus 203 ~L~R~ 207 (291)
.|+.-
T Consensus 219 ~l~~G 223 (249)
T COG1134 219 WLEHG 223 (249)
T ss_pred EEeCC
Confidence 99763
No 406
>PF02610 Arabinose_Isome: L-arabinose isomerase; InterPro: IPR003762 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source [].; GO: 0008733 L-arabinose isomerase activity, 0008152 metabolic process; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=37.04 E-value=3.1e+02 Score=27.23 Aligned_cols=78 Identities=14% Similarity=0.000 Sum_probs=43.5
Q ss_pred hHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhc
Q psy4520 87 KFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRS 166 (291)
Q Consensus 87 ~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~ 166 (291)
.+.+..+.-..+|.=|...+-..+.++|.+.++.+-...+|..||+- |+.-... +-.++.| +.+
T Consensus 33 ~i~~~l~~~~~~p~~vv~k~~~~t~~~i~~~~~~an~~~~c~gvi~w----MhTfSpa--------kmwI~gl----~~l 96 (359)
T PF02610_consen 33 EIVDGLNASGSLPVKVVFKPVVTTPEEITRVCKEANADEDCDGVITW----MHTFSPA--------KMWIPGL----QRL 96 (359)
T ss_dssp HHHHHHHHHS--SSEEEE---B-SHHHHHHHHHHHHH-TTEEEEEEE----ESS---T--------HHHHHHH----HH-
T ss_pred HHHHHHhhcCCCceEEEecCccCCHHHHHHHHHHhhccCCccEEeeh----hhhhccH--------HHHHHHH----HHh
Confidence 44444555556788888888778999999999998888899988874 4432211 2245555 478
Q ss_pred CceEEEEe-c-cCCcC
Q psy4520 167 HCHVTLVI-H-PRKEN 180 (291)
Q Consensus 167 ~VpVilvs-h-pRk~e 180 (291)
++||+++. | +|...
T Consensus 97 ~kPllhl~tQ~~~~ip 112 (359)
T PF02610_consen 97 QKPLLHLHTQPNRAIP 112 (359)
T ss_dssp -S-EEEEE--SSSS--
T ss_pred CCCeEEeecccccCCC
Confidence 99999775 5 56654
No 407
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=36.91 E-value=1.7e+02 Score=33.18 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=42.7
Q ss_pred HhhcCCCeEEEcCCCCCCHHHHHHHH------HHHHHhCC--CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHH
Q psy4520 93 DWFKTLPMYFLTFHGPQPLKLVMEAV------EHAMYVYD--TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFAS 164 (291)
Q Consensus 93 ~~~~~~pl~i~d~~g~~~i~~i~~~~------r~~~~~~g--v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ak 164 (291)
.++-..|+-| .|+|.++..+ ++..+-.+ -.+||||++..- +. .+...+.+-|+ ++.
T Consensus 558 ~rll~apv~V------~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY--------D~-~~~~~L~rlL~-w~~ 621 (1110)
T TIGR02562 558 KTLLAAPVLV------CTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY--------EP-EDLPALLRLVQ-LAG 621 (1110)
T ss_pred hhhhcCCeEE------ecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC--------CH-HHHHHHHHHHH-HHH
Confidence 3444445544 6899999887 33333233 469999999421 22 22344555555 999
Q ss_pred hcCceEEEEec
Q psy4520 165 RSHCHVTLVIH 175 (291)
Q Consensus 165 e~~VpVilvsh 175 (291)
.+|+||++++=
T Consensus 622 ~lG~~VlLmSA 632 (1110)
T TIGR02562 622 LLGSRVLLSSA 632 (1110)
T ss_pred HcCCCEEEEeC
Confidence 99999998864
No 408
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=36.85 E-value=1.3e+02 Score=27.93 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=33.0
Q ss_pred HHhCCCc--EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC
Q psy4520 122 MYVYDTG--HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN 180 (291)
Q Consensus 122 ~~~~gv~--lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e 180 (291)
..++|+. =|++|++ + +... + .+..-++++.++.|.+. ++|+ ++..+||.-
T Consensus 159 ~~~~Gi~~~~Ii~DPg-~--gf~k---s-~~~~~~~l~~i~~l~~~-~~pi-l~G~SrkSf 210 (257)
T cd00739 159 AESAGVARNRIILDPG-I--GFGK---T-PEHNLELLRRLDELKQL-GLPV-LVGASRKSF 210 (257)
T ss_pred HHHcCCCHHHEEEecC-C--Cccc---C-HHHHHHHHHHHHHHHhC-CCcE-EEEecccHH
Confidence 4678986 8999997 2 2221 2 23335578888887765 9998 456677764
No 409
>cd03592 CLECT_selectins_like C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels). CLECT_selectins_like: C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. P- E- and L-sels are cell adhesion receptors that mediate the initial attachment, tethering, and rolling of lymphocytes on inflamed vascular walls enabling subsequent lymphocyte adhesion and transmigration. L- sel is expressed constitutively on most leukocytes. P-sel is stored in the Weibel-Palade bodies of endothelial cells and in the alpha granules of platlets. E- sels are present on endothelial cells. Following platelet and/or endothelial cell activation P- sel is rapidly translocated to the cell surface and E-sel exp
Probab=36.73 E-value=21 Score=28.02 Aligned_cols=36 Identities=25% Similarity=0.607 Sum_probs=28.9
Q ss_pred EeeCCCCchhhhHhhhhccCCCcccCCCccccccce
Q psy4520 247 FYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282 (291)
Q Consensus 247 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
++-....+|.++.++|.+.||.++-=.|++-+-||.
T Consensus 4 ~~~~~~~~w~~A~~~C~~~g~~La~i~s~~e~~~i~ 39 (115)
T cd03592 4 HYSTEKMTFNEAVKYCKSRGTDLVAIQNAEENALLN 39 (115)
T ss_pred EEcCCccCHHHHHHHHHHcCCeEeecCCHHHHHHHH
Confidence 455567899999999999999999877776665554
No 410
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.62 E-value=2.3e+02 Score=25.60 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=40.5
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-.- +. |. .....+.+.|+.+++ +..|++++|.... +.+-||.|+
T Consensus 170 l~~~p~llllDEPt~--~L-----D~-~~~~~l~~~l~~~~~--~~tiiivtH~~~~--------------~~~~~d~i~ 225 (259)
T PRK14274 170 LATNPDVLLMDEPTS--AL-----DP-VSTRKIEELILKLKE--KYTIVIVTHNMQQ--------------AARVSDQTA 225 (259)
T ss_pred HhcCCCEEEEcCCcc--cC-----CH-HHHHHHHHHHHHHhc--CCEEEEEEcCHHH--------------HHHhCCEEE
Confidence 345679999999832 11 21 234557777777754 6889999996442 557789998
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 226 ~l~~ 229 (259)
T PRK14274 226 FFYM 229 (259)
T ss_pred EEEC
Confidence 8864
No 411
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=36.54 E-value=2.3e+02 Score=22.88 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=47.6
Q ss_pred CCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecccccc--------CCC-CCCccHHHHHHHHHHHHHHHHHhcC
Q psy4520 97 TLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFML--------GLS-DSALDRFYMQDTIIQEFRAFASRSH 167 (291)
Q Consensus 97 ~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~--------~~~-~~~~~r~~~~~~i~r~LK~~Ake~~ 167 (291)
+.+++..|+.- ...+..+-+++....+|+.++++..-.... ... .....+.-...-=..-+.+++++.+
T Consensus 28 ~~~~v~~dtg~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~K~~~~~~~~~~~~ 105 (173)
T cd01713 28 PVPVIFLDTGY--EFPETYEFVDRVAERYGLPLVVVRPPDSPAEGLALGLKGFPLPSPDRRWCCRILKVEPLRRALKELG 105 (173)
T ss_pred CceEEEeCCCC--CCHHHHHHHHHHHHHhCCCeEEECCCccHHHHHHHhhhccCCccccHHHhhccccchHHHHHHHhcC
Confidence 45566666532 345567778888899999998887642211 000 0001111100111345667788889
Q ss_pred ceEEEEeccCCcC
Q psy4520 168 CHVTLVIHPRKEN 180 (291)
Q Consensus 168 VpVilvshpRk~e 180 (291)
..++++-|.+...
T Consensus 106 ~~~~~~G~r~de~ 118 (173)
T cd01713 106 VVAWITGIRRDES 118 (173)
T ss_pred CeEEEEEeccccc
Confidence 9999998866654
No 412
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=36.36 E-value=1.9e+02 Score=25.52 Aligned_cols=59 Identities=8% Similarity=0.091 Sum_probs=34.6
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-.- + .+ + .....+...|.+..++ ..|++++|.... +++-||.|++
T Consensus 120 ~~~p~llllDEP~~--~-lD---~--~~~~~~~~~l~~~~~~--~~ii~vsH~~~~--------------~~~~~d~i~~ 175 (213)
T PRK15177 120 LLPCRLYIADGKLY--T-GD---N--ATQLRMQAALACQLQQ--KGLIVLTHNPRL--------------IKEHCHAFGV 175 (213)
T ss_pred hcCCCEEEECCCCc--c-CC---H--HHHHHHHHHHHHHhhC--CcEEEEECCHHH--------------HHHhcCeeEE
Confidence 35678999999621 1 11 1 1122344445444444 348888995442 5567899999
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
++.
T Consensus 176 l~~ 178 (213)
T PRK15177 176 LLH 178 (213)
T ss_pred EEC
Confidence 875
No 413
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=36.32 E-value=40 Score=36.77 Aligned_cols=49 Identities=14% Similarity=0.117 Sum_probs=35.7
Q ss_pred CCCcEEEEeccc-cccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC
Q psy4520 125 YDTGHVIIDNVQ-FMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN 180 (291)
Q Consensus 125 ~gv~lviIDyLq-lm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e 180 (291)
.+.-+||||++- ||.. ....+...+..|-+.|+..|||+++.+|.-.++
T Consensus 638 lP~iviiiDe~adlm~~-------~~k~ve~~i~rLa~~ara~GIHlilatqRps~d 687 (858)
T COG1674 638 LPYIVIIIDEYADLMMV-------AGKELEELIARLAQKGRAAGIHLILATQRPSVD 687 (858)
T ss_pred CCeEEEEEcchHHHhhh-------hhHHHHHHHHHHHHhhhhcceEEEEecCCCCcc
Confidence 334489999993 3221 112378889999999999999999999955543
No 414
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=36.25 E-value=54 Score=29.32 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccH-----HHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDR-----FYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r-----~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+++.+.+.++.+ ...|+++||.=++-+ .+.... ... ....+..++.|..+|++++++|++=..
T Consensus 15 n~~~~~~~i~~a-~~~g~dlivfPE~~l-~g~~~~-~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~ 82 (255)
T cd07581 15 NLEKVRRLLAEA-AAAGADLVVFPEYTM-ARFGDG-LDDYARVAEPLDGPFVSALARLARELGITVVAGMF 82 (255)
T ss_pred HHHHHHHHHHHH-HHcCCCEEECcchhc-CCCCcc-hhhHHhhhccCCCHHHHHHHHHHHHcCeEEEEEee
Confidence 344555555554 347899999887743 322110 100 011235788999999999999997544
No 415
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=36.24 E-value=1.2e+02 Score=27.91 Aligned_cols=76 Identities=16% Similarity=0.260 Sum_probs=49.8
Q ss_pred HHHhhcCC---CeEEEcCCCCC--CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 91 YSDWFKTL---PMYFLTFHGPQ--PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 91 a~~~~~~~---pl~i~d~~g~~--~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
|.+|+.+. +--|+|.+... -..+.+..+|.++. .-++|+.|+-+ + . .| -.-|++...-|+.+.+|
T Consensus 131 a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt--~PrLvfMDEPT---G--G--LD-VSVQARLLDllrgLv~~ 200 (258)
T COG4107 131 AQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVT--RPRLVFMDEPT---G--G--LD-VSVQARLLDLLRGLVRE 200 (258)
T ss_pred HHHHHHhcccCcccccCcccccchHHHHHHHHHHHhcc--CCceEEecCCC---C--C--cc-hhhHHHHHHHHHHHHHh
Confidence 44454432 34455543211 25667777777643 45788877762 1 1 12 34578999999999999
Q ss_pred cCceEEEEecc
Q psy4520 166 SHCHVTLVIHP 176 (291)
Q Consensus 166 ~~VpVilvshp 176 (291)
++..|++|.|-
T Consensus 201 l~la~viVTHD 211 (258)
T COG4107 201 LGLAVVIVTHD 211 (258)
T ss_pred cCceEEEEech
Confidence 99999999994
No 416
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=36.19 E-value=1.6e+02 Score=24.62 Aligned_cols=65 Identities=14% Similarity=0.244 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 111 LKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
++.+...++. ++..|++.+++-.-..-..........+....+.+++|...|+++||.|.+=-|+
T Consensus 70 ~~~~~~~i~~-a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 70 LEYLKKAIDL-AKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHH-HHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHHHHHHHHH-HHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 5666666665 4778999888763310011111123456677778899999999999876665553
No 417
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=36.12 E-value=70 Score=29.02 Aligned_cols=56 Identities=16% Similarity=-0.008 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
+...++.+....+.-+-+++.+.+..... .+.++....++++.++.+++++||||+
T Consensus 38 v~~~~sDiaa~Ga~P~~~~~~l~~~~~~~--~~~~~~~l~~~~~g~~~~~~~~gv~iv 93 (264)
T cd02204 38 VAEAVRNLVAVGADPLAITDCLNFGNPEK--PEGEMGQLVEAVLGLGDACRALGTPVI 93 (264)
T ss_pred HHHHHHHHhhhCCchHheeeceeccCCCC--CcchHHHHHHHHHHHHHHHHHhCCCcc
Confidence 44444444444444467778876543321 112556788999999999999999977
No 418
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=35.96 E-value=3.2e+02 Score=25.48 Aligned_cols=87 Identities=7% Similarity=-0.058 Sum_probs=52.8
Q ss_pred hHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCC-----------------------C
Q psy4520 87 KFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLS-----------------------D 143 (291)
Q Consensus 87 ~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~-----------------------~ 143 (291)
.+..+..++...--.|.-.+|. .+..|+++....||+|..||.+-....- .
T Consensus 65 ~~r~~~~kfr~~~dlI~V~~~~------lkv~R~Av~~~rVDil~~p~~~r~~~gldh~~a~laa~~~valeisl~~ll~ 138 (229)
T COG1603 65 QLRRLVKKFRSKVDLIAVEPGS------LKVNRAAVENKRVDILSHPETGRKDPGLDHVLARLAAEKGVALEISLRPLLR 138 (229)
T ss_pred HHHHHHHhhhcceeEEEEccCc------HHHHHHHHhccCccEEEcccccCCCccccHHHHHHHHhcCceEEEehHHhhc
Confidence 3444666666531223334442 3567788888999999987664322100 0
Q ss_pred CCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 144 SALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 144 ~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
....+...+-..++++-++++.+++|+++-+-.+..
T Consensus 139 ~~g~~Ra~~l~~lr~~lrl~rk~~v~ivvtS~A~s~ 174 (229)
T COG1603 139 SSGYRRARLLSFLRSLLRLARKYDVPIVVTSDAESP 174 (229)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCh
Confidence 001122245667889999999999999998764443
No 419
>PF12846 AAA_10: AAA-like domain
Probab=35.72 E-value=52 Score=29.46 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=44.0
Q ss_pred CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec-cCCcCCCCccccccccccccccCccEEEEE
Q psy4520 127 TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRKENEQLTVNSVFGSAKATQESDNVLIIQ 205 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~ 205 (291)
-.+++||+.+.+.... .....+..+-+-++.+|+.+++.+| +....+.+.. -.|-+.+.+.++..
T Consensus 221 ~~~i~iDEa~~~~~~~--------~~~~~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~------~~i~~n~~~~i~~~ 286 (304)
T PF12846_consen 221 PKIIVIDEAHNFLSNP--------SGAEFLDELLREGRKYGVGLILATQSPSDLPKSPIE------DAILANCNTKIIFR 286 (304)
T ss_pred eEEEEeCCcccccccc--------chhhhhhHHHHHHHhcCCEEEEeeCCHHHHhccchH------HHHHHhCCcEEEec
Confidence 3488999997765432 2344677777788899999999998 5443221111 45667777777765
Q ss_pred cc
Q psy4520 206 QK 207 (291)
Q Consensus 206 R~ 207 (291)
-+
T Consensus 287 ~~ 288 (304)
T PF12846_consen 287 LE 288 (304)
T ss_pred CC
Confidence 33
No 420
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=35.66 E-value=42 Score=27.35 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCceEEEEeccCCcC--CCC------ccccccccccccccCccEEEEEcc
Q psy4520 155 IIQEFRAFASRSHCHVTLVIHPRKEN--EQL------TVNSVFGSAKATQESDNVLIIQQK 207 (291)
Q Consensus 155 i~r~LK~~Ake~~VpVilvshpRk~e--k~p------~lsDLrgSg~IeQdAD~Vi~L~R~ 207 (291)
....+++||..+++||+--...+..= .-| ....-.....+-+.||.|+++.-.
T Consensus 27 a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~ 87 (137)
T PF00205_consen 27 AAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGTR 87 (137)
T ss_dssp CHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESSS
T ss_pred HHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECCC
Confidence 57789999999999997665554431 222 121122233455889999999854
No 421
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=35.53 E-value=2.4e+02 Score=25.59 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=39.2
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+.|||.- +|=..++..++.+...+..+.++|=-| .+.. +.+ -....+.+++++||||-.||.
T Consensus 125 VLVDDEi--STG~T~lnli~al~~~~p~~~yvvasL---~d~~-~~~--------~~~~~~~~~~~lgi~i~~vsL 186 (191)
T PF15609_consen 125 VLVDDEI--STGNTFLNLIRALHAKYPRKRYVVASL---LDWR-SEE--------DRARFEALAEELGIPIDVVSL 186 (191)
T ss_pred EEEecCc--cchHHHHHHHHHHHHhCCCceEEEEEE---eeCC-CHH--------HHHHHHHHHHHcCCcEEEEEe
Confidence 5666642 234455555666666688887776655 1221 111 145678899999999998876
No 422
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=35.03 E-value=1.7e+02 Score=23.76 Aligned_cols=67 Identities=9% Similarity=0.112 Sum_probs=34.8
Q ss_pred CCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 97 TLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 97 ~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
...+.+.|++|. +......+.....-++=++|+|.-+ .+...........+.+.....++|++++..
T Consensus 49 ~~~~~l~Dt~G~---~~~~~~~~~~~~~~~~~v~vvd~~~---------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N 115 (167)
T cd04160 49 NARLKFWDLGGQ---ESLRSLWDKYYAECHAIIYVIDSTD---------RERFEESKSALEKVLRNEALEGVPLLILAN 115 (167)
T ss_pred CEEEEEEECCCC---hhhHHHHHHHhCCCCEEEEEEECch---------HHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 456888999985 2333333333232233366666532 112222333444444433456899998876
No 423
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.98 E-value=2.1e+02 Score=25.60 Aligned_cols=68 Identities=13% Similarity=0.155 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -..-+++++|+-. .+ .|. .....+.+.|+.++ + ++.|++++|....
T Consensus 155 rv~laral--~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~l~~~~-~-~~tilivsh~~~~-------------- 208 (251)
T PRK14249 155 RLCIARVL--AIEPEVILMDEPC--SA-----LDP-VSTMRIEELMQELK-Q-NYTIAIVTHNMQQ-------------- 208 (251)
T ss_pred HHHHHHHH--hcCCCEEEEeCCC--cc-----CCH-HHHHHHHHHHHHHh-c-CCEEEEEeCCHHH--------------
Confidence 33444444 3456999999983 21 121 33455777777774 3 7899999995442
Q ss_pred ccccCccEEEEEcc
Q psy4520 194 ATQESDNVLIIQQK 207 (291)
Q Consensus 194 IeQdAD~Vi~L~R~ 207 (291)
+..-||.+++|++.
T Consensus 209 ~~~~~d~i~~l~~G 222 (251)
T PRK14249 209 AARASDWTGFLLTG 222 (251)
T ss_pred HHhhCCEEEEEeCC
Confidence 45668999999753
No 424
>PRK03906 mannonate dehydratase; Provisional
Probab=34.81 E-value=1.3e+02 Score=29.85 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 108 PQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 108 ~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
..+.++|.+..+. +..+|+.+-||-.+-......-...++.+++....+.|+++|+ .+|+||.-
T Consensus 39 ~W~~~~i~~~~~~-ie~~Gl~~~vvEs~pv~~~Ik~g~~~rd~~ie~y~~sirnlg~-~GI~~icY 102 (385)
T PRK03906 39 VWPVEEILARKAE-IEAAGLEWSVVESVPVHEDIKTGTPNRDRYIENYKQTLRNLAA-AGIKVVCY 102 (385)
T ss_pred CCCHHHHHHHHHH-HHHcCCeEEEEeCCCccHHHHcCCCCHHHHHHHHHHHHHHHHh-cCCcEEEe
Confidence 4688888766554 7889999999988754322221235788999999999999996 68999865
No 425
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=34.80 E-value=2.3e+02 Score=26.45 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=43.1
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-++-+++++|+-. .+ .| -..+..+.+.|+.+++ +..|++++|.... +++-||.|+
T Consensus 148 l~~~p~lliLDEPt--~g-----LD-~~~~~~l~~~l~~~~~--~~tiii~sH~l~~--------------~~~~~d~i~ 203 (301)
T TIGR03522 148 LIHDPKVLILDEPT--TG-----LD-PNQLVEIRNVIKNIGK--DKTIILSTHIMQE--------------VEAICDRVI 203 (301)
T ss_pred HhcCCCEEEEcCCc--cc-----CC-HHHHHHHHHHHHHhcC--CCEEEEEcCCHHH--------------HHHhCCEEE
Confidence 45678999999983 11 12 1344667788888864 6889999995543 567788888
Q ss_pred EEEccC
Q psy4520 203 IIQQKF 208 (291)
Q Consensus 203 ~L~R~~ 208 (291)
+++.-.
T Consensus 204 ~l~~G~ 209 (301)
T TIGR03522 204 IINKGK 209 (301)
T ss_pred EEECCE
Confidence 887543
No 426
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=34.79 E-value=3.3e+02 Score=31.56 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=41.7
Q ss_pred hCCCc-EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec-cCCcCCCCccccccccccccccCccE
Q psy4520 124 VYDTG-HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRKENEQLTVNSVFGSAKATQESDNV 201 (291)
Q Consensus 124 ~~gv~-lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk~ek~p~lsDLrgSg~IeQdAD~V 201 (291)
-.+-+ ++++|+-. .+ .|. .....+++.|+++|++ +..|++++| |+. .+.+.+|.|
T Consensus 917 ~~~P~~iLlLDEPT--sg-----LD~-~~~~~i~~~L~~la~~-g~tvI~t~H~~~~--------------~~~~~~D~v 973 (1394)
T TIGR00956 917 VAKPKLLLFLDEPT--SG-----LDS-QTAWSICKLMRKLADH-GQAILCTIHQPSA--------------ILFEEFDRL 973 (1394)
T ss_pred HcCCCeEEEEcCCC--CC-----CCH-HHHHHHHHHHHHHHHc-CCEEEEEecCCCH--------------HHHHhcCEE
Confidence 34566 89999883 11 222 3456789999999875 899999999 443 133568999
Q ss_pred EEEEc
Q psy4520 202 LIIQQ 206 (291)
Q Consensus 202 i~L~R 206 (291)
++|.+
T Consensus 974 l~L~~ 978 (1394)
T TIGR00956 974 LLLQK 978 (1394)
T ss_pred EEEcC
Confidence 99964
No 427
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=34.78 E-value=1.1e+02 Score=27.79 Aligned_cols=63 Identities=14% Similarity=0.069 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccC---CCCCCc---cH-----HHHHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLG---LSDSAL---DR-----FYMQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~---~~~~~~---~r-----~~~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
+++.+...++.+ .+.|+++||.=++-+ .+ ...... +. ....+..++.|+.+|++++|.|++-+
T Consensus 19 n~~~i~~~i~~A-~~~gadlivfPE~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~ 92 (280)
T cd07574 19 FAAKVEYWVAEA-AGYGADLLVFPEYFT-MELLSLLPEAIDGLDEAIRALAALTPDYVALFSELARKYGINIIAGS 92 (280)
T ss_pred HHHHHHHHHHHH-HHcCCCEEECchHhH-HHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEecc
Confidence 345555556554 356899999888732 21 110000 00 12235688999999999999998643
No 428
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.73 E-value=2.8e+02 Score=24.86 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=40.1
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+.+++++|+-. .+- |. .....+.+.|+.+++ +..|++++|.... +.+-||.|++
T Consensus 163 ~~~p~llllDEP~--~~L-----D~-~~~~~l~~~L~~~~~--~~tiiivsH~~~~--------------~~~~~d~v~~ 218 (251)
T PRK14270 163 AVKPDVILMDEPT--SAL-----DP-ISTLKIEDLMVELKK--EYTIVIVTHNMQQ--------------ASRVSDYTAF 218 (251)
T ss_pred hcCCCEEEEeCCc--ccC-----CH-HHHHHHHHHHHHHHh--CCeEEEEEcCHHH--------------HHHhcCEEEE
Confidence 3567999999983 221 21 334567777777766 3788999995442 5567899998
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
++.
T Consensus 219 l~~ 221 (251)
T PRK14270 219 FLM 221 (251)
T ss_pred EEC
Confidence 864
No 429
>KOG1321|consensus
Probab=34.67 E-value=1.1e+02 Score=30.36 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=56.1
Q ss_pred hcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh--cCceEEE
Q psy4520 95 FKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR--SHCHVTL 172 (291)
Q Consensus 95 ~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake--~~VpVil 172 (291)
|...|=|-..+.|+ ++.+|.+..|.--+..++++=|||-|- ... + =-...-+.|-.+|+.|-.. .+|-|+.
T Consensus 160 fsqYPQyS~sTsGS-Sln~l~r~~r~~~~~~~~~wsiIdrW~-t~~-g----lIkafA~~I~keL~~F~~~~r~~VVIlF 232 (395)
T KOG1321|consen 160 FSQYPQYSCSTSGS-SLNELWRQFREDGYERDIKWSIIDRWP-TRE-G----LIKAFAENIEKELQTFPEPVRDDVVILF 232 (395)
T ss_pred eccCCceeeecCcc-cHHHHHHHHHhcCcccCCceEeecccc-ccc-h----HHHHHHHHHHHHHHhcCCcccccEEEEE
Confidence 35668888999994 899999998887777889999999992 111 1 1112335688899999877 8888888
Q ss_pred Eec
Q psy4520 173 VIH 175 (291)
Q Consensus 173 vsh 175 (291)
.+|
T Consensus 233 SAH 235 (395)
T KOG1321|consen 233 SAH 235 (395)
T ss_pred ecC
Confidence 899
No 430
>PF13173 AAA_14: AAA domain
Probab=34.66 E-value=51 Score=26.58 Aligned_cols=36 Identities=11% Similarity=0.248 Sum_probs=26.5
Q ss_pred CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhc-CceEEEEec
Q psy4520 126 DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRS-HCHVTLVIH 175 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~-~VpVilvsh 175 (291)
|-.+||||++|.+. .....+|.++... ++.|++...
T Consensus 61 ~~~~i~iDEiq~~~--------------~~~~~lk~l~d~~~~~~ii~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--------------DWEDALKFLVDNGPNIKIILTGS 97 (128)
T ss_pred CCcEEEEehhhhhc--------------cHHHHHHHHHHhccCceEEEEcc
Confidence 67899999998652 2456667777766 788888755
No 431
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=34.61 E-value=2.5e+02 Score=25.73 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=0.0
Q ss_pred cchhhhhhHHHHHHhhcC-CCeEEEcC-----CCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHH
Q psy4520 80 PLLDNLDKFDEYSDWFKT-LPMYFLTF-----HGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQD 153 (291)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~-~pl~i~d~-----~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~ 153 (291)
+..+..+++..+.+.... -++.|.-. .+...+++.+++++. ...-|.+.|+|..+.
T Consensus 122 ~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~a-y~~AGAD~v~v~~~~----------------- 183 (243)
T cd00377 122 PIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKA-YAEAGADGIFVEGLK----------------- 183 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHH-HHHcCCCEEEeCCCC-----------------
Q ss_pred HHHHHHHHHHHhcCceEEEEecc
Q psy4520 154 TIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 154 ~i~r~LK~~Ake~~VpVilvshp 176 (291)
-...+++++++.+.||.+...|
T Consensus 184 -~~~~~~~~~~~~~~Pl~~~~~~ 205 (243)
T cd00377 184 -DPEEIRAFAEAPDVPLNVNMTP 205 (243)
T ss_pred -CHHHHHHHHhcCCCCEEEEecC
No 432
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=34.57 E-value=85 Score=24.66 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCceEEEEeccC-CcCCCCccccccccccccccCccEEEEEccC
Q psy4520 155 IIQEFRAFASRSHCHVTLVIHPR-KENEQLTVNSVFGSAKATQESDNVLIIQQKF 208 (291)
Q Consensus 155 i~r~LK~~Ake~~VpVilvshpR-k~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~ 208 (291)
+-.+|+..|++.|+.|.+-.|.. ..+..++-.++ ++||.|++.....
T Consensus 17 aa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i-------~~Ad~vi~~~~~~ 64 (96)
T cd05569 17 AAEALEKAAKKLGWEIKVETQGSLGIENELTAEDI-------AEADAVILAADVP 64 (96)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHH-------hhCCEEEEecCCC
Confidence 57899999999999999888843 33333333444 6899999997643
No 433
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=34.50 E-value=2.6e+02 Score=25.44 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+. .+-+++++|+-. .+ .| ...+..+.+.|+.+++ +..|++++|....
T Consensus 159 rv~laral~--~~p~lllLDEPt--~~-----LD-~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~-------------- 212 (264)
T PRK14243 159 RLCIARAIA--VQPEVILMDEPC--SA-----LD-PISTLRIEELMHELKE--QYTIIIVTHNMQQ-------------- 212 (264)
T ss_pred HHHHHHHHh--cCCCEEEEeCCC--cc-----CC-HHHHHHHHHHHHHHhc--CCEEEEEecCHHH--------------
Confidence 344444443 466899999982 21 12 2334567888888876 3789999995442
Q ss_pred ccccCccEEEEE
Q psy4520 194 ATQESDNVLIIQ 205 (291)
Q Consensus 194 IeQdAD~Vi~L~ 205 (291)
+.+-||.|++|.
T Consensus 213 ~~~~~d~v~~l~ 224 (264)
T PRK14243 213 AARVSDMTAFFN 224 (264)
T ss_pred HHHhCCEEEEEe
Confidence 568899999996
No 434
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=34.46 E-value=2.7e+02 Score=25.61 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=45.9
Q ss_pred CCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 97 TLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 97 ~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
..|+++ ..+..+.++.++.++.+ .+.|++.|+|=+=-+ . . .+ .+++.+-++.+|...++||++=-.|
T Consensus 69 ~~~vi~--gv~~~~~~~~~~~a~~a-~~~G~d~v~~~~P~~-~----~-~~----~~~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 69 RVPVIA--GTGSNNTAEAIELTKRA-EKAGADAALVVTPYY-N----K-PS----QEGLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred CCcEEe--ccCCccHHHHHHHHHHH-HHcCCCEEEEccccc-C----C-CC----HHHHHHHHHHHHhcCCCCEEEEECh
Confidence 466665 33445788999999885 778999766432211 0 1 12 2567889999999999999976555
Q ss_pred C
Q psy4520 177 R 177 (291)
Q Consensus 177 R 177 (291)
-
T Consensus 136 ~ 136 (284)
T cd00950 136 G 136 (284)
T ss_pred h
Confidence 3
No 435
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=34.26 E-value=60 Score=28.68 Aligned_cols=53 Identities=6% Similarity=0.013 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+...++.+....+.-+.+.|+|.+ ... .......++++.++..++++|||++-
T Consensus 25 v~~~~sDl~a~Ga~P~~~~~~l~~--~~~----~~~~~~~~~~~Gi~~~~~~~gi~ivg 77 (222)
T cd00396 25 VGGAVNDIAAMGARPIALLASLSL--SNG----LEVDILEDVVDGVAEACNQLGVPIVG 77 (222)
T ss_pred HHHhHHHHHhcCCccHHHhhhecc--CCC----CCHHHHHHHHHHHHHHHHHcCCeEec
Confidence 444455544444455778888853 111 23356788999999999999999773
No 436
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=34.20 E-value=2.9e+02 Score=24.68 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.+++ +..|++++|....
T Consensus 156 rv~laral--~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~--~~tii~~sH~~~~-------------- 209 (252)
T PRK14239 156 RVCIARVL--ATSPKIILLDEPT--SA-----LDP-ISAGKIEETLLGLKD--DYTMLLVTRSMQQ-------------- 209 (252)
T ss_pred HHHHHHHH--hcCCCEEEEcCCc--cc-----cCH-HHHHHHHHHHHHHhh--CCeEEEEECCHHH--------------
Confidence 33444443 3567899999983 21 121 334567788888865 4789999995432
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 210 ~~~~~d~i~~l~~ 222 (252)
T PRK14239 210 ASRISDRTGFFLD 222 (252)
T ss_pred HHHhCCEEEEEEC
Confidence 5677899999864
No 437
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=34.05 E-value=2.7e+02 Score=25.15 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=40.9
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-++++.|+-. .+ .|. .....+.+.|+.+++ +..|++++|.... +.+-||.|+
T Consensus 171 l~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~L~~~~~--~~tiii~sH~~~~--------------~~~~~d~i~ 226 (260)
T PRK10744 171 IAIRPEVLLLDEPC--SA-----LDP-ISTGRIEELITELKQ--DYTVVIVTHNMQQ--------------AARCSDYTA 226 (260)
T ss_pred HHCCCCEEEEcCCC--cc-----CCH-HHHHHHHHHHHHHhc--CCeEEEEeCCHHH--------------HHHhCCEEE
Confidence 34577999999983 11 122 334567777887754 5789999995432 456789999
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++.+
T Consensus 227 ~l~~ 230 (260)
T PRK10744 227 FMYL 230 (260)
T ss_pred EEEC
Confidence 9965
No 438
>PRK00074 guaA GMP synthase; Reviewed
Probab=33.89 E-value=3.4e+02 Score=27.81 Aligned_cols=145 Identities=11% Similarity=0.039 Sum_probs=75.5
Q ss_pred EeccCCH----HHHHHHHHHHHhcCCCccc----ccc-ccchhhhhccccccccccCCCCchhHHHHHhhccchhhhhhH
Q psy4520 18 GSFEVQN----KRLARIMLQQLVRKPLLDN----LDK-FDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLLDNLDKF 88 (291)
Q Consensus 18 fSlEM~~----~ql~~Rml~~~a~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 88 (291)
|=+|.+. .++++..+...+|....-. ..+ .+...+.++.-. ...-++|.-+|.-..-.+.
T Consensus 168 FHPE~~~t~~G~~il~nFl~~i~~~~~~~~~~~~~~~~~~~l~~~v~~~~-vlva~SGGvDS~vll~ll~---------- 236 (511)
T PRK00074 168 FHPEVTHTPQGKKLLENFVFDICGCKGDWTMENFIEEAIEEIREQVGDKK-VILGLSGGVDSSVAAVLLH---------- 236 (511)
T ss_pred CCCCcCCchhHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHhcCCCc-EEEEeCCCccHHHHHHHHH----------
Confidence 3456543 5778888877777443311 010 111122233222 3445777777555442211
Q ss_pred HHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecc----ccccCCCCCCccHHHHH-HHHHHHHHHHH
Q psy4520 89 DEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNV----QFMLGLSDSALDRFYMQ-DTIIQEFRAFA 163 (291)
Q Consensus 89 ~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyL----qlm~~~~~~~~~r~~~~-~~i~r~LK~~A 163 (291)
++.+ ..=..+|++. |.....+..+..+.++..+|+.+.+||.= .-+.+.... +++-... ..+.+.|...|
T Consensus 237 -~~lg-~~v~av~vd~--g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~f~~~l~g~~~~-~~~r~~~~~~~~~~~~~~a 311 (511)
T PRK00074 237 -KAIG-DQLTCVFVDH--GLLRKNEAEQVMEMFREHFGLNLIHVDASDRFLSALAGVTDP-EEKRKIIGREFIEVFEEEA 311 (511)
T ss_pred -HHhC-CceEEEEEeC--CCCCHHHHHHHHHHHHHHcCCcEEEEccHHHHHHhccCCCCc-HHhhhhhhHHHHHHHHHHH
Confidence 1111 1223356643 33344566666666778999999999963 111111111 1121112 22456789999
Q ss_pred Hhc-CceEEEEeccCC
Q psy4520 164 SRS-HCHVTLVIHPRK 178 (291)
Q Consensus 164 ke~-~VpVilvshpRk 178 (291)
+++ |+..++..|+..
T Consensus 312 ~~~~g~~~latGhn~d 327 (511)
T PRK00074 312 KKLGGVKFLAQGTLYP 327 (511)
T ss_pred HHccCCCEEEECCCcc
Confidence 999 999999888433
No 439
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=33.84 E-value=1.9e+02 Score=26.95 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhC-CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccc
Q psy4520 112 KLVMEAVEHAMYVY-DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFG 190 (291)
Q Consensus 112 ~~i~~~~r~~~~~~-gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrg 190 (291)
...+..++.+..+- +-+++++|+-. .+ .+ ...+..+.+.|+++++ .+..|+++.|....
T Consensus 175 ~QRl~LAraL~~~~~~p~lllLDEPt--sg-----LD-~~~~~~l~~~L~~l~~-~g~tvIiitH~~~~----------- 234 (261)
T cd03271 175 AQRIKLAKELSKRSTGKTLYILDEPT--TG-----LH-FHDVKKLLEVLQRLVD-KGNTVVVIEHNLDV----------- 234 (261)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCC--CC-----CC-HHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-----------
Confidence 34555556555432 45899999983 21 12 1335667778888864 48899999996652
Q ss_pred cccccccCccEEEEEc
Q psy4520 191 SAKATQESDNVLIIQQ 206 (291)
Q Consensus 191 Sg~IeQdAD~Vi~L~R 206 (291)
+. .||.|+.+..
T Consensus 235 ---i~-~aD~ii~Lgp 246 (261)
T cd03271 235 ---IK-CADWIIDLGP 246 (261)
T ss_pred ---HH-hCCEEEEecC
Confidence 33 4899999964
No 440
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.81 E-value=1.1e+02 Score=26.64 Aligned_cols=48 Identities=15% Similarity=0.018 Sum_probs=33.4
Q ss_pred CcEEEEeccccccCCCCC----CccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 127 TGHVIIDNVQFMLGLSDS----ALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~----~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.-+||||+=+-+...... +.+. ..+-.-+..|..-|+..++||+.+.+
T Consensus 6 ~ALivID~Q~~f~~~~~~~~~~~~~~-~~i~~~i~~l~~~ar~~~~~vi~t~~ 57 (205)
T COG1335 6 TALIVVDMQNDFMPGGGSLAALGVDG-RKIIPNIAALVDAARAAGQPVIATQD 57 (205)
T ss_pred eEEEEEeeeccccCCCCcccccCCch-hhhHHHHHHHHHHHHHcCCeEEEecc
Confidence 458999998766543311 1111 34566677888888999999999977
No 441
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=33.80 E-value=2e+02 Score=25.73 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
.....++.+...-.-+++|+|+-. .+ .|. .....+.+.|+.+++ .+..|++++|....
T Consensus 144 qrv~laral~~~p~~~llllDEPt--~g-----LD~-~~~~~l~~~l~~~~~-~g~tii~itH~~~~------------- 201 (226)
T cd03270 144 QRIRLATQIGSGLTGVLYVLDEPS--IG-----LHP-RDNDRLIETLKRLRD-LGNTVLVVEHDEDT------------- 201 (226)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCc--cC-----CCH-HHHHHHHHHHHHHHh-CCCEEEEEEeCHHH-------------
Confidence 344445554433323699999983 11 121 335667888888865 49999999996432
Q ss_pred cccccCccEEEEEcc
Q psy4520 193 KATQESDNVLIIQQK 207 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R~ 207 (291)
+ ..||.|+++.+.
T Consensus 202 -~-~~~d~i~~l~~~ 214 (226)
T cd03270 202 -I-RAADHVIDIGPG 214 (226)
T ss_pred -H-HhCCEEEEeCCC
Confidence 2 258999999443
No 442
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=33.55 E-value=2.4e+02 Score=24.35 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=39.3
Q ss_pred CeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 99 PMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 99 pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
++|+...+.....+.+.+.++.+ ...|++.|.+|... .+ ....-...++++.+++..++|+++-.|
T Consensus 8 ~~~~it~~~~~~~~~~~~~~~~~-~~~gv~~v~lr~~~---------~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 73 (212)
T PRK00043 8 RLYLITDSRDDSGRDLLEVVEAA-LEGGVTLVQLREKG---------LD-TRERLELARALKELCRRYGVPLIVNDR 73 (212)
T ss_pred CEEEEECCcccccccHHHHHHHH-HhcCCCEEEEeCCC---------CC-HHHHHHHHHHHHHHHHHhCCeEEEeCh
Confidence 36655433222224466666664 44689988777442 12 122334677888899999999987433
No 443
>PRK10342 glycerate kinase I; Provisional
Probab=33.55 E-value=48 Score=33.00 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
-++.|++...--.+-.+.|+|| .+.+ ..|.+...+...-.+-++|+.++|||++++=...
T Consensus 268 G~d~v~~~~~l~~~l~~ADLVI-------TGEG--~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~~~ 327 (381)
T PRK10342 268 GIEIVTTALNLEEHIHDCTLVI-------TGEG--RIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSLT 327 (381)
T ss_pred HHHHHHHhcCHHHHhccCCEEE-------ECCC--cCcccccCCccHHHHHHHHHHhCCCEEEEecccC
Confidence 3555666554444446677766 3322 2355555667788888899999999999986543
No 444
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=33.33 E-value=3.2e+02 Score=23.57 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=36.5
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHH-HHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQE-FRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~-LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
-.+-+++++|+-. .+ .|. ..+..+.+. ++.++++ +..|++++|.... +.+ ||.|+
T Consensus 143 ~~~p~llllDEP~--~~-----LD~-~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~--------------~~~-~d~i~ 198 (204)
T cd03250 143 YSDADIYLLDDPL--SA-----VDA-HVGRHIFENCILGLLLN-NKTRILVTHQLQL--------------LPH-ADQIV 198 (204)
T ss_pred hcCCCEEEEeCcc--cc-----CCH-HHHHHHHHHHHHHhccC-CCEEEEEeCCHHH--------------Hhh-CCEEE
Confidence 4567999999983 11 122 233455664 4566665 8999999995432 334 77777
Q ss_pred EEE
Q psy4520 203 IIQ 205 (291)
Q Consensus 203 ~L~ 205 (291)
.++
T Consensus 199 ~l~ 201 (204)
T cd03250 199 VLD 201 (204)
T ss_pred EEe
Confidence 775
No 445
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=33.27 E-value=78 Score=28.47 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHH--HHHHHHHHHHHHHHHhcCceEE
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRF--YMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~--~~~~~i~r~LK~~Ake~~VpVi 171 (291)
+++.+.+.++.++ . |+++||.=++ .+.+-.. ..... ...+..+..|+++|+++++.|+
T Consensus 18 N~~~~~~~i~~a~-~-gadlvvfPE~-~l~g~~~-~~~~~~~~~~~~~~~~l~~la~~~~i~i~ 77 (252)
T cd07575 18 NLAHFEEKIEQLK-E-KTDLIVLPEM-FTTGFSM-NAEALAEPMNGPTLQWMKAQAKKKGAAIT 77 (252)
T ss_pred HHHHHHHHHHHhh-c-CCCEEEeCCc-CcCCCCc-cHHHhhcccCChHHHHHHHHHHHCCeEEE
Confidence 4556666777665 4 9999998887 3333211 00110 1124578899999999998655
No 446
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.26 E-value=3e+02 Score=24.58 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
..+..+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.+++ +..|++++|....
T Consensus 153 qrv~laral--~~~p~lllLDEP~--~~-----LD~-~~~~~l~~~l~~~~~--~~tiii~sH~~~~------------- 207 (250)
T PRK14247 153 QRLCIARAL--AFQPEVLLADEPT--AN-----LDP-ENTAKIESLFLELKK--DMTIVLVTHFPQQ------------- 207 (250)
T ss_pred HHHHHHHHH--hcCCCEEEEcCCC--cc-----CCH-HHHHHHHHHHHHHhc--CCEEEEEeCCHHH-------------
Confidence 344444444 3567999999983 21 121 334567788888754 6889999995442
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++.+
T Consensus 208 -~~~~~d~i~~l~~ 220 (250)
T PRK14247 208 -AARISDYVAFLYK 220 (250)
T ss_pred -HHHhcCEEEEEEC
Confidence 4567888888864
No 447
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.08 E-value=2.2e+02 Score=26.06 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=41.0
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-..-+++++|+-. .+ .|. .....+.+.|+.+++ +..|++++|... .+..-||.+++
T Consensus 170 ~~~p~lllLDEPt--~g-----LD~-~~~~~l~~~l~~~~~--~~tiiivtH~~~--------------~~~~~~d~i~~ 225 (269)
T PRK14259 170 AIEPEVILMDEPC--SA-----LDP-ISTLKIEETMHELKK--NFTIVIVTHNMQ--------------QAVRVSDMTAF 225 (269)
T ss_pred hcCCCEEEEcCCC--cc-----CCH-HHHHHHHHHHHHHhc--CCEEEEEeCCHH--------------HHHHhcCEEEE
Confidence 3567999999983 21 122 334567777777754 578999999543 25678899999
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
++.
T Consensus 226 l~~ 228 (269)
T PRK14259 226 FNA 228 (269)
T ss_pred Eec
Confidence 975
No 448
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=33.04 E-value=2e+02 Score=27.72 Aligned_cols=56 Identities=11% Similarity=-0.043 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHHHh--CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 106 HGPQPLKLVMEAVEHAMYV--YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 106 ~g~~~i~~i~~~~r~~~~~--~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
.+..+++.+.+.++..... .++++|+|.+.+-..+.- . =++++..+|+++|+++++
T Consensus 136 ~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~----~-------~l~~I~~la~~~g~~liv 193 (387)
T PRK09331 136 EYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNL----A-------DAKKVAKVAHEYGIPFLL 193 (387)
T ss_pred CCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccc----c-------cHHHHHHHHHHcCCEEEE
Confidence 3446788887766542222 268999998774322211 1 167788889999998773
No 449
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=32.98 E-value=1.3e+02 Score=27.27 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCC-ccHHHHH------HHHHHHHHHHHHhcCceEEE
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSA-LDRFYMQ------DTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~-~~r~~~~------~~i~r~LK~~Ake~~VpVil 172 (291)
+++.+.+.++.+ ...|+++||.=++- +.+..... ....... +.+...|+.+|++++++|++
T Consensus 17 n~~~~~~~i~~A-~~~gadlivfPE~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i~iv~ 84 (284)
T cd07573 17 NLAKAEELVREA-AAQGAQIVCLQELF-ETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGVVIPV 84 (284)
T ss_pred HHHHHHHHHHHH-HHCCCcEEEccccc-cCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCEEEEe
Confidence 456666666665 45889999988772 33321100 0111111 24678999999999998876
No 450
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=32.96 E-value=1.9e+02 Score=23.72 Aligned_cols=56 Identities=4% Similarity=-0.064 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHH---HHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 110 PLKLVMEAVEHA---MYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 110 ~i~~i~~~~r~~---~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+.++....++.+ .++.+.++|++.+. . .. . . .. .....+...++++|++.+++++-
T Consensus 82 ~~~~~~~~l~~li~~~~~~~~~vil~~~~-~-~~-~-~-~~--~~~~~~~~~~~~~a~~~~~~~~d 140 (177)
T cd01822 82 PPDQTRANLRQMIETAQARGAPVLLVGMQ-A-PP-N-Y-GP--RYTRRFAAIYPELAEEYGVPLVP 140 (177)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEecC-C-CC-c-c-ch--HHHHHHHHHHHHHHHHcCCcEec
Confidence 344444433333 23458999988753 1 11 1 1 11 23567888899999999998873
No 451
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=32.94 E-value=2.3e+02 Score=27.52 Aligned_cols=65 Identities=9% Similarity=0.086 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCc---cHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSAL---DRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN 180 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~---~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e 180 (291)
+.++++. ....|.+-|++|++---......+. ...+.+-.+++.|.+-|++.+..++++.+ |..+
T Consensus 149 l~~rl~~-l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~N-nG~e 216 (315)
T TIGR01370 149 AFSYLDR-VIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQ-NGEE 216 (315)
T ss_pred HHHHHHH-HHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEec-Cchh
Confidence 4444444 3678999999998832111111111 12244556777777778999988766644 4444
No 452
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=32.91 E-value=83 Score=28.85 Aligned_cols=80 Identities=8% Similarity=0.050 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccH-HHHHHHHHHHHHHHHHhcCceEEEEeccCCcC--CCCccc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDR-FYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN--EQLTVN 186 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r-~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e--k~p~ls 186 (291)
..+++ +.++..+...|+++.+||.=.+.........++ +.-=..+.+.+..+|+++++.+++..|+...- .+|.+.
T Consensus 50 ~~~e~-~~a~~~a~~lgi~~~ii~~~~~~~~~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rpg~~ 128 (252)
T TIGR00268 50 SPREL-EDAIIIAKEIGVNHEFVKIDKMINPFRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRPGYR 128 (252)
T ss_pred CHHHH-HHHHHHHHHcCCCEEEEEcHHHHHHHHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccHHHH
Confidence 33444 445566788999999987421111001011111 11113367789999999999999999976542 556665
Q ss_pred cccc
Q psy4520 187 SVFG 190 (291)
Q Consensus 187 DLrg 190 (291)
.+.+
T Consensus 129 a~~~ 132 (252)
T TIGR00268 129 AVKE 132 (252)
T ss_pred HHHH
Confidence 4443
No 453
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.86 E-value=2.8e+02 Score=24.74 Aligned_cols=68 Identities=12% Similarity=0.196 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..++.+ -.+-+++++|+-. .+ -|. .....+.+.|+++++ +..|++++|....
T Consensus 154 r~~la~al--~~~p~llllDEP~--~~-----LD~-~~~~~l~~~l~~~~~--~~tili~sH~~~~-------------- 207 (250)
T PRK14262 154 RLCIARAL--AVEPEVILLDEPT--SA-----LDP-IATQRIEKLLEELSE--NYTIVIVTHNIGQ-------------- 207 (250)
T ss_pred HHHHHHHH--hCCCCEEEEeCCc--cc-----cCH-HHHHHHHHHHHHHhc--CcEEEEEeCCHHH--------------
Confidence 34444444 3467899999983 21 122 334567777888765 5789999995432
Q ss_pred ccccCccEEEEEcc
Q psy4520 194 ATQESDNVLIIQQK 207 (291)
Q Consensus 194 IeQdAD~Vi~L~R~ 207 (291)
+...||.|+++.+-
T Consensus 208 ~~~~~d~i~~l~~G 221 (250)
T PRK14262 208 AIRIADYIAFMYRG 221 (250)
T ss_pred HHHhCCEEEEEECC
Confidence 45668888888653
No 454
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=32.79 E-value=1.8e+02 Score=23.37 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=36.7
Q ss_pred CeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 99 PMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 99 pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.+-+.|++|.. ......+...+.-.+=++++|-- + .+..+.+......++.++...++|+++|..
T Consensus 50 ~~~l~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~-------~--~~s~~~~~~~~~~i~~~~~~~~~~~~iv~n 114 (161)
T cd01863 50 KLAIWDTAGQE---RFRTLTSSYYRGAQGVILVYDVT-------R--RDTFTNLETWLNELETYSTNNDIVKMLVGN 114 (161)
T ss_pred EEEEEECCCch---hhhhhhHHHhCCCCEEEEEEECC-------C--HHHHHhHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 36777888842 12222222222222334555521 1 133455666778888888888999998873
No 455
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=32.76 E-value=1.6e+02 Score=26.59 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=31.3
Q ss_pred CeEEEcCCCCCCHHHHHHHHHHHHHh-CCCcEEEEeccccc
Q psy4520 99 PMYFLTFHGPQPLKLVMEAVEHAMYV-YDTGHVIIDNVQFM 138 (291)
Q Consensus 99 pl~i~d~~g~~~i~~i~~~~r~~~~~-~gv~lviIDyLqlm 138 (291)
.+.|.+.+|. +..-+..+++.+..+ .|+.+++++++++.
T Consensus 102 ~ivivngHgG-N~~~l~~~~~~l~~~~~~~~v~~~~~~~~~ 141 (237)
T PF02633_consen 102 RIVIVNGHGG-NIAALEAAARELRQEYPGVKVFVINWWQLA 141 (237)
T ss_dssp EEEEEESSTT-HHHHHHHHHHHHHHHGCC-EEEEEEGGGCS
T ss_pred EEEEEECCHh-HHHHHHHHHHHHHhhCCCcEEEEeechhcc
Confidence 3777777775 677788888998888 89999999999875
No 456
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=32.74 E-value=2.2e+02 Score=24.72 Aligned_cols=24 Identities=13% Similarity=-0.060 Sum_probs=18.9
Q ss_pred cCCeEEEEeccCCHHHHHHHHHHH
Q psy4520 11 QGVTTLWGSFEVQNKRLARIMLQQ 34 (291)
Q Consensus 11 qG~~v~~fSlEM~~~ql~~Rml~~ 34 (291)
.|..+++...-++.+-.+-|+++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 355778888888889888888873
No 457
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=32.73 E-value=2.1e+02 Score=28.40 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....+|.+ -+.-+++++|+-. .+ .|- ..+.++.+-|+.+++ .+..|++++|.-..
T Consensus 147 Rv~IArAL--~~~P~iLLLDEPt--sg-----LD~-~~~~~l~~lL~~l~~-~g~TIIivsHdl~~-------------- 201 (402)
T PRK09536 147 RVLLARAL--AQATPVLLLDEPT--AS-----LDI-NHQVRTLELVRRLVD-DGKTAVAAIHDLDL-------------- 201 (402)
T ss_pred HHHHHHHH--HcCCCEEEEECCc--cc-----CCH-HHHHHHHHHHHHHHh-cCCEEEEEECCHHH--------------
Confidence 33444443 4567999999983 11 122 345668888888886 58999999995443
Q ss_pred ccccCccEEEEEcc
Q psy4520 194 ATQESDNVLIIQQK 207 (291)
Q Consensus 194 IeQdAD~Vi~L~R~ 207 (291)
+.+-||.+++|+.-
T Consensus 202 ~~~~adrii~l~~G 215 (402)
T PRK09536 202 AARYCDELVLLADG 215 (402)
T ss_pred HHHhCCEEEEEECC
Confidence 55668888888654
No 458
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=32.73 E-value=2.3e+02 Score=23.56 Aligned_cols=55 Identities=11% Similarity=0.025 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
.........+.+++++.|||=+=--|.+. .......+..+.+.|+ +.+++||+++
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG~---~~~~a~~v~~f~~~L~---~~~~~~v~~~ 89 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDGT---EGPLTERAQKFANRLE---GRFGVPVVLW 89 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCcC---cCHHHHHHHHHHHHHH---HHhCCCEEEE
Confidence 34566677788999999888743123322 1234445555555554 4569999988
No 459
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=32.71 E-value=2e+02 Score=30.64 Aligned_cols=42 Identities=14% Similarity=0.374 Sum_probs=26.3
Q ss_pred CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 126 DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.+++||||.+|++.+.. ..+.++..-+..+ .+.+.+|++.+.
T Consensus 377 ~~DLLlIDDIq~l~gke-------~tqeeLF~l~N~l-~e~gk~IIITSd 418 (617)
T PRK14086 377 EMDILLVDDIQFLEDKE-------STQEEFFHTFNTL-HNANKQIVLSSD 418 (617)
T ss_pred cCCEEEEehhccccCCH-------HHHHHHHHHHHHH-HhcCCCEEEecC
Confidence 48899999999875321 1223444433333 466888888766
No 460
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=32.63 E-value=69 Score=29.21 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
...+.++.+...-..++||+|+|+.+...+ +-..++++.-|+ +|--+.|||+-=
T Consensus 109 ~~w~~a~~~l~~~~ydlviLDEl~~al~~g------~l~~eeV~~~l~--~kP~~~~vIiTG 162 (198)
T COG2109 109 AGWEHAKEALADGKYDLVILDELNYALRYG------LLPLEEVVALLK--ARPEHTHVIITG 162 (198)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhhHHHHcC------CCCHHHHHHHHh--cCCCCcEEEEEC
Confidence 344555566666779999999998876533 233566777777 556666666653
No 461
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.60 E-value=2.9e+02 Score=24.65 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccc
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKA 194 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~I 194 (291)
...+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+.+++ +..|++++|.... +
T Consensus 154 v~laral--~~~p~llllDEP~--~~-----LD~-~~~~~l~~~l~~~~~--~~tii~~sh~~~~--------------~ 207 (249)
T PRK14253 154 LCIARTI--AMEPDVILMDEPT--SA-----LDP-IATHKIEELMEELKK--NYTIVIVTHSMQQ--------------A 207 (249)
T ss_pred HHHHHHH--HcCCCEEEEeCCC--cc-----CCH-HHHHHHHHHHHHHhc--CCeEEEEecCHHH--------------H
Confidence 3344443 3467999999983 21 122 334567888888876 4899999995442 4
Q ss_pred cccCccEEEEEc
Q psy4520 195 TQESDNVLIIQQ 206 (291)
Q Consensus 195 eQdAD~Vi~L~R 206 (291)
..-||.+++|..
T Consensus 208 ~~~~d~i~~l~~ 219 (249)
T PRK14253 208 RRISDRTAFFLM 219 (249)
T ss_pred HHhCCEEEEEEC
Confidence 566888888864
No 462
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=32.59 E-value=99 Score=29.44 Aligned_cols=64 Identities=9% Similarity=0.173 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHH-HhCCCcEEEEeccccccCCC--CC--CccHHHHHHHHHHHHHHHHHhcCceEEEEeccC
Q psy4520 109 QPLKLVMEAVEHAM-YVYDTGHVIIDNVQFMLGLS--DS--ALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 109 ~~i~~i~~~~r~~~-~~~gv~lviIDyLqlm~~~~--~~--~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR 177 (291)
.+.++|++.++.++ ....++.|+||.- .+.... .- +.+++-.-..+++.|+ +.|++|++.++|-
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~-~~~~~~~~~f~~d~~~FPdp~~mi~~L~----~~G~kv~~~i~P~ 89 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWF-YWPKQGWGEWKFDPERFPDPKAMVRELH----EMNAELMISIWPT 89 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEech-hhcCCCceeEEEChhhCCCHHHHHHHHH----HCCCEEEEEecCC
Confidence 46777888887653 2346999999932 222222 10 1223333445555555 7999999988765
No 463
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=32.55 E-value=3.2e+02 Score=23.62 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=44.1
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccc
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKA 194 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~I 194 (291)
+..+|.+ -.+-+++++|+-. .+ .|. ..+..+.+.|++++++ +..|++++|.... +
T Consensus 113 v~laral--~~~p~illlDEPt--~~-----LD~-~~~~~l~~~L~~~~~~-~~tiii~sh~~~~--------------~ 167 (200)
T cd03217 113 NEILQLL--LLEPDLAILDEPD--SG-----LDI-DALRLVAEVINKLREE-GKSVLIITHYQRL--------------L 167 (200)
T ss_pred HHHHHHH--hcCCCEEEEeCCC--cc-----CCH-HHHHHHHHHHHHHHHC-CCEEEEEecCHHH--------------H
Confidence 3344443 3567899999883 11 122 3456788888888764 8899999995321 3
Q ss_pred cc-cCccEEEEEc
Q psy4520 195 TQ-ESDNVLIIQQ 206 (291)
Q Consensus 195 eQ-dAD~Vi~L~R 206 (291)
+. .||.+++++.
T Consensus 168 ~~~~~d~i~~l~~ 180 (200)
T cd03217 168 DYIKPDRVHVLYD 180 (200)
T ss_pred HHhhCCEEEEEEC
Confidence 34 5899988865
No 464
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=32.55 E-value=3.4e+02 Score=23.70 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccC
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR 177 (291)
.+..+|.+ -...+++++|+-. .+. | ......+...|+.++++ ++.|++++|..
T Consensus 157 rl~laral--~~~p~llllDEPt--~~L-----D-~~~~~~l~~~l~~~~~~-g~tii~vsH~~ 209 (224)
T TIGR02324 157 RVNIARGF--IADYPILLLDEPT--ASL-----D-AANRQVVVELIAEAKAR-GAALIGIFHDE 209 (224)
T ss_pred HHHHHHHH--hcCCCEEEEcCCc--ccC-----C-HHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 34444443 3457899999983 111 2 23345678888888654 89999999963
No 465
>PRK13753 dihydropteroate synthase; Provisional
Probab=32.53 E-value=1.6e+02 Score=28.06 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=34.8
Q ss_pred HHhCCC--cEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC
Q psy4520 122 MYVYDT--GHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN 180 (291)
Q Consensus 122 ~~~~gv--~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e 180 (291)
....|| +-||||+= .+-. ++.+. +.-=++++.|..|..+++.|| |+.++||.=
T Consensus 160 ~~~~Gi~~~~IilDPG---iGF~-k~k~~-~~n~~ll~~l~~l~~~~g~Pv-Lvg~SRKsf 214 (279)
T PRK13753 160 LRRSGVAADRLILDPG---MGFF-LSPAP-ETSLHVLSNLQKLKSALGLPL-LVSVSRKSF 214 (279)
T ss_pred HHHcCCChhhEEEeCC---CCCC-CCCCh-HHHHHHHHhHHHHHHhCCCce-EEEccHhHH
Confidence 356888 47999984 2221 11122 222348999999988899998 467788874
No 466
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=32.52 E-value=46 Score=29.16 Aligned_cols=54 Identities=9% Similarity=0.028 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCceEEEEecc------CCcCCCCcccccccccc-----------ccccCccEEEEEccCc
Q psy4520 154 TIIQEFRAFASRSHCHVTLVIHP------RKENEQLTVNSVFGSAK-----------ATQESDNVLIIQQKFN 209 (291)
Q Consensus 154 ~i~r~LK~~Ake~~VpVilvshp------Rk~ek~p~lsDLrgSg~-----------IeQdAD~Vi~L~R~~~ 209 (291)
.....+++||..+|+||+.-.+. +.....| ..+-.-|. -++.+|.|+|+.-+-+
T Consensus 42 ~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~--~~lg~~g~~~~~p~~e~~~g~g~~DlvlfvG~~~y 112 (162)
T TIGR00315 42 EEKELIVKFIEKFDLPVVATADTYRALIEAGIESEE--MNLHEITQFLADPSWEGFDGEGNYDLVLFLGIIYY 112 (162)
T ss_pred cHHHHHHHHHHHHCCCEEEcCccccccccCCeecCC--CCHHHHHHhccCchhhhccCCCCcCEEEEeCCcch
Confidence 36788999999999999977764 2222111 11101111 1278999999987764
No 467
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.43 E-value=2.8e+02 Score=22.76 Aligned_cols=56 Identities=16% Similarity=0.308 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
...+..++.+. ...+++++|+-. .+ .|. .....+.+.|+.+++. +..|++++|..+
T Consensus 86 ~~r~~l~~~l~--~~~~i~ilDEp~--~~-----lD~-~~~~~l~~~l~~~~~~-~~tii~~sh~~~ 141 (157)
T cd00267 86 RQRVALARALL--LNPDLLLLDEPT--SG-----LDP-ASRERLLELLRELAEE-GRTVIIVTHDPE 141 (157)
T ss_pred HHHHHHHHHHh--cCCCEEEEeCCC--cC-----CCH-HHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 33444455443 357999999983 11 121 3345678888888776 789999999655
No 468
>PRK06455 riboflavin synthase; Provisional
Probab=32.38 E-value=3.5e+02 Score=23.75 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=45.7
Q ss_pred CCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEE-EEec
Q psy4520 98 LPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVT-LVIH 175 (291)
Q Consensus 98 ~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi-lvsh 175 (291)
..+-+..-||. -+|=-+++++....++|.||. |... +... .++ .--.+.++.|..++-+.++||+ +-+|
T Consensus 31 ~~I~v~~VPGa---~ELP~aakkL~~~~~yDaVIa--LG~V-G~t~--h~d-~Va~~vS~GL~~lsL~t~~PVi~v~vh 100 (155)
T PRK06455 31 AKIIRYTVPGI---KDLPVAAKKLIEEEGCDIVMA--LGMP-GPTE--KDK-YCAHEASIGLIMAQLMTNKHIIEVFVH 100 (155)
T ss_pred CceEEEECCCH---HHHHHHHHHHHhcCCCCEEEE--ecce-eccC--cch-hHHHHHHHHHHHHHhhhCCCEEEEEec
Confidence 45667777884 556666667766677887763 2221 2221 232 3345689999999999999999 5577
No 469
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=32.30 E-value=1.1e+02 Score=26.25 Aligned_cols=49 Identities=6% Similarity=-0.014 Sum_probs=31.1
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
+.+|+++|++.+.- ....... ......+..+.+.++.+|+++|||++=+
T Consensus 104 ~~~~~~~il~tp~~-~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 152 (198)
T cd01821 104 RAKGATPILVTPVT-RRTFDEG-GKVEDTLGDYPAAMRELAAEEGVPLIDL 152 (198)
T ss_pred HHCCCeEEEECCcc-ccccCCC-CcccccchhHHHHHHHHHHHhCCCEEec
Confidence 45688888876541 1111110 1122346778999999999999999843
No 470
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=32.27 E-value=1.5e+02 Score=26.70 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCC-CccHHHHH------HHHHHHHHHHHHhcCceEEEE
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDS-ALDRFYMQ------DTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~-~~~r~~~~------~~i~r~LK~~Ake~~VpVilv 173 (291)
+++.+...++.+ .+.|+++||.=++ .+.+-... ........ +..++.|+.+|++++|.|++-
T Consensus 17 Nl~~~~~~i~~A-~~~gadlivfPE~-~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i~~g 85 (279)
T TIGR03381 17 NIARAERLVREA-AARGAQIILLPEL-FEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGVVIPVS 85 (279)
T ss_pred HHHHHHHHHHHH-HHCCCCEEEcccc-cCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCcEEEEe
Confidence 455666666664 4579999998887 33332110 01111111 357899999999999988753
No 471
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=32.20 E-value=1e+02 Score=30.00 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHH---hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec-cCC
Q psy4520 108 PQPLKLVMEAVEHAMY---VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRK 178 (291)
Q Consensus 108 ~~~i~~i~~~~r~~~~---~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk 178 (291)
..++++|++..+.+.. ..+-++||||+.+.|.. ..+..+.+.|..-. -++.+++++| |.+
T Consensus 120 ~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---------~aanaLLk~LEEpp--~~~~fiLit~~~~~ 183 (351)
T PRK09112 120 AITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---------NAANAILKTLEEPP--ARALFILISHSSGR 183 (351)
T ss_pred cCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH---------HHHHHHHHHHhcCC--CCceEEEEECChhh
Confidence 3679999988877654 34688999999987632 22333444443321 3677788887 443
No 472
>PRK09932 glycerate kinase II; Provisional
Probab=32.15 E-value=59 Score=32.40 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
-++.|++...--.+-.+.|+|| .+.+ ..|.+...+...-.+-++|+.++|||++++=.-.
T Consensus 268 G~d~v~~~~~l~~~l~~ADlVI-------TGEG--~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~~ 327 (381)
T PRK09932 268 GIEIVLNAVNLEQAVQGAALVI-------TGEG--RIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLG 327 (381)
T ss_pred HHHHHHHhcChHHHhccCCEEE-------ECCC--cccccccCCccHHHHHHHHHHcCCCEEEEecccC
Confidence 3455555554434445677665 3322 2455566677788888899999999999986443
No 473
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=32.12 E-value=1.8e+02 Score=24.16 Aligned_cols=47 Identities=9% Similarity=-0.114 Sum_probs=29.2
Q ss_pred CCCcEEEEeccccccCCC--------CCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 125 YDTGHVIIDNVQFMLGLS--------DSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~--------~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
.++++|++-+.-.-.... .........+..+...++.+|++++||++
T Consensus 106 ~~~~ii~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i 160 (199)
T cd01838 106 PKTKVILITPPPVDEEAWEKSLEDGGSQPGRTNELLKQYAEACVEVAEELGVPVI 160 (199)
T ss_pred CCCeEEEeCCCCCCHHHHhhhhccccCCccccHHHHHHHHHHHHHHHHHhCCcEE
Confidence 578999985541110000 00012234567788899999999999988
No 474
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=32.07 E-value=81 Score=29.06 Aligned_cols=63 Identities=10% Similarity=0.186 Sum_probs=47.7
Q ss_pred HHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccE
Q psy4520 122 MYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNV 201 (291)
Q Consensus 122 ~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~V 201 (291)
+.-.+-+++|.|+=.-+.+. ....++++-|+.+.++.+..|++++|.-.. +..-||.|
T Consensus 152 vLa~~P~iliLDEPta~LD~--------~~~~~l~~~l~~L~~~~~~tii~~tHd~~~--------------~~~~ad~v 209 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDP--------KGRRELLELLKKLKEEGGKTIIIVTHDLEL--------------VLEYADRV 209 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCH--------HHHHHHHHHHHHHHhcCCCeEEEEeCcHHH--------------HHhhCCEE
Confidence 34456889999998544332 345778999999999999999999996553 45568888
Q ss_pred EEEEc
Q psy4520 202 LIIQQ 206 (291)
Q Consensus 202 i~L~R 206 (291)
+++.-
T Consensus 210 ~vl~~ 214 (235)
T COG1122 210 VVLDD 214 (235)
T ss_pred EEEEC
Confidence 88853
No 475
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=31.98 E-value=86 Score=27.56 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCcc-----HHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALD-----RFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~-----r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+++.+...++.+ ...|+++||.=++-+ .+....... .....+...+.|+.+|++++++|++=+.
T Consensus 16 n~~~~~~~i~~a-~~~g~dlvvfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~~ 84 (253)
T cd07197 16 NLAKALRLIKEA-AEQGADLIVLPELFL-TGYSFESAKEDLDLAEELDGPTLEALAELAKELGIYIVAGIA 84 (253)
T ss_pred HHHHHHHHHHHH-HHCCCCEEEcCCccc-cCCccccchhhhhhcccCCchHHHHHHHHHHHhCeEEEeeeE
Confidence 345555555554 348899999887732 322110000 0011245889999999999999886543
No 476
>PRK04195 replication factor C large subunit; Provisional
Probab=31.97 E-value=3.3e+02 Score=27.45 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=37.2
Q ss_pred CeEEEcCCCCCCHHHHHHHHHHHHHh-----CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 99 PMYFLTFHGPQPLKLVMEAVEHAMYV-----YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 99 pl~i~d~~g~~~i~~i~~~~r~~~~~-----~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
++...+.....+.+.+...+..+... .+-++||||+...+.... ++ ..+. .|..+.++.++|||++
T Consensus 66 ~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----d~-~~~~----aL~~~l~~~~~~iIli 136 (482)
T PRK04195 66 EVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----DR-GGAR----AILELIKKAKQPIILT 136 (482)
T ss_pred CEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----ch-hHHH----HHHHHHHcCCCCEEEe
Confidence 33333333323455555555443322 136799999998765321 21 2233 3444445789999999
Q ss_pred ec
Q psy4520 174 IH 175 (291)
Q Consensus 174 sh 175 (291)
+.
T Consensus 137 ~n 138 (482)
T PRK04195 137 AN 138 (482)
T ss_pred cc
Confidence 86
No 477
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=31.95 E-value=1.5e+02 Score=34.06 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHH----hCCCc--EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhc-CceEEE
Q psy4520 108 PQPLKLVMEAVEHAMY----VYDTG--HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRS-HCHVTL 172 (291)
Q Consensus 108 ~~~i~~i~~~~r~~~~----~~gv~--lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~-~VpVil 172 (291)
..+.++.++.++++.. ++|+. -||||+|-+-.+.+. +......-+.+..+|.+.+++ +|++++
T Consensus 494 ~~t~e~r~~ia~r~~~~~~~~~Gi~~~dIi~Dplv~~v~t~~--ee~~~~~~~~leair~ik~~~P~~~~~~ 563 (1229)
T PRK09490 494 ADTRERKIEICKRAYDILTEEVGFPPEDIIFDPNIFAVATGI--EEHNNYAVDFIEATRWIKQNLPHAKISG 563 (1229)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEcCCcceeecCh--HHHHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 3577777777666443 48876 899999965444321 122234455778888888888 999984
No 478
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=31.81 E-value=1.9e+02 Score=28.05 Aligned_cols=60 Identities=12% Similarity=0.044 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHH-----------HHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 108 PQPLKLVMEAVEH-----------AMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 108 ~~~i~~i~~~~r~-----------~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
..|.+..++.+++ ...++|+.-++||.|-+-. .+ ....++.++..-+++++|+++=.||
T Consensus 159 ~pt~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpv-s~---------~~~tl~aI~~iK~~~G~pt~~GlSN 228 (308)
T PRK00979 159 DPSVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPL-PG---------SGAAIRAIFAVKAKFGYPVGCAPHN 228 (308)
T ss_pred CCCHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcC-cc---------HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3488887777776 1478999999999994322 11 3567888888888999999977665
Q ss_pred C
Q psy4520 177 R 177 (291)
Q Consensus 177 R 177 (291)
=
T Consensus 229 i 229 (308)
T PRK00979 229 A 229 (308)
T ss_pred C
Confidence 3
No 479
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=31.76 E-value=2e+02 Score=24.41 Aligned_cols=59 Identities=8% Similarity=0.123 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
.+....+.+.....--+||||++|.+. ... .........+..-+...+...++.++++.
T Consensus 105 ~l~~~~~~l~~~~~~~iiviDe~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~~~~~~v~~~ 163 (234)
T PF01637_consen 105 ALERLLEKLKKKGKKVIIVIDEFQYLA-IAS--EEDKDFLKSLRSLLDSLLSQQNVSIVITG 163 (234)
T ss_dssp -HHHHHHHHHHCHCCEEEEEETGGGGG-BCT--TTTHHHHHHHHHHHHH----TTEEEEEEE
T ss_pred HHHHHHHHHHhcCCcEEEEEecHHHHh-hcc--cchHHHHHHHHHHHhhccccCCceEEEEC
Confidence 344444444333323699999999877 211 12223344555555555566666666554
No 480
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.69 E-value=3e+02 Score=25.10 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccc
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKA 194 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~I 194 (291)
...+|.+ -.+-+++++|+-. .+ .| ...+..+.+.|+.+++ +..|++++|.... +
T Consensus 158 v~laral--~~~p~llllDEPt--sg-----LD-~~~~~~l~~~l~~~~~--~~tii~isH~~~~--------------i 211 (261)
T PRK14263 158 LCIARAI--ATEPEVLLLDEPC--SA-----LD-PIATRRVEELMVELKK--DYTIALVTHNMQQ--------------A 211 (261)
T ss_pred HHHHHHH--HcCCCEEEEeCCC--cc-----CC-HHHHHHHHHHHHHHhc--CCeEEEEeCCHHH--------------H
Confidence 3344443 3567999999983 21 12 2345667888888854 5788999995443 5
Q ss_pred cccCccEEEEEc
Q psy4520 195 TQESDNVLIIQQ 206 (291)
Q Consensus 195 eQdAD~Vi~L~R 206 (291)
.+-||.|+++..
T Consensus 212 ~~~~d~v~~l~~ 223 (261)
T PRK14263 212 IRVADTTAFFSV 223 (261)
T ss_pred HHhCCEEEEEec
Confidence 677999999974
No 481
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=31.66 E-value=1.3e+02 Score=27.12 Aligned_cols=51 Identities=10% Similarity=-0.041 Sum_probs=32.5
Q ss_pred CCcEEEEeccccccCCCCC------CccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 126 DTGHVIIDNVQFMLGLSDS------ALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~------~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
..-+||||.-+-....... .......+-.-+.+|...|++.++||+.+.+.
T Consensus 15 ~tALlvID~Qn~f~~~~~~~~~~~~~~~~~~~~i~~i~~l~~~aR~~g~pVI~~~~~ 71 (226)
T TIGR03614 15 QTALIVVDMQNAYATPGGYLDLAGFDVSGTKPVIENIKKAVTAARAAGIQVIYFQNG 71 (226)
T ss_pred CEEEEEEechhhhhCCCcccccccCcchhHHHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 3569999988644432211 01222333345788888899999999988663
No 482
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.64 E-value=1.4e+02 Score=25.72 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=29.6
Q ss_pred CCcEEEEeccccccCCCCC---CccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 126 DTGHVIIDNVQFMLGLSDS---ALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~---~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+.++|++.+.-+....... .........++.+.++.+|++++|+++=
T Consensus 125 ~~~iil~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~iD 174 (208)
T cd01839 125 APKILIVAPPPIRTPKGSLAGKFAGAEEKSKGLADAYRALAEELGCHFFD 174 (208)
T ss_pred CCCEEEEeCCccCccccchhhhhccHHHHHHHHHHHHHHHHHHhCCCEEc
Confidence 5789998876331111100 0112245677899999999999999873
No 483
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=31.62 E-value=3.6e+02 Score=23.76 Aligned_cols=60 Identities=10% Similarity=0.179 Sum_probs=40.5
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ .|. .....+.+.|+.++ .++.|++++|.... ++ .||.|+
T Consensus 154 l~~~p~llllDEP~--~g-----LD~-~~~~~l~~~l~~~~--~g~~vi~~sh~~~~--------------~~-~~d~v~ 208 (238)
T cd03249 154 LLRNPKILLLDEAT--SA-----LDA-ESEKLVQEALDRAM--KGRTTIVIAHRLST--------------IR-NADLIA 208 (238)
T ss_pred HhcCCCEEEEeCcc--cc-----CCH-HHHHHHHHHHHHhc--CCCEEEEEeCCHHH--------------Hh-hCCEEE
Confidence 34577999999983 21 121 23355777777775 48999999996542 44 589999
Q ss_pred EEEcc
Q psy4520 203 IIQQK 207 (291)
Q Consensus 203 ~L~R~ 207 (291)
++..-
T Consensus 209 ~l~~G 213 (238)
T cd03249 209 VLQNG 213 (238)
T ss_pred EEECC
Confidence 98653
No 484
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=31.59 E-value=1.2e+02 Score=27.72 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCC-CCCccHH-HH-----HHHHHHHHHHHHHhcCceEEEEe
Q psy4520 111 LKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLS-DSALDRF-YM-----QDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~-~~~~~r~-~~-----~~~i~r~LK~~Ake~~VpVilvs 174 (291)
++.+.+.++.+ .+.|+++||.=++- +.+.. ....... .. -+..+..|+.+|++++++|++-.
T Consensus 29 l~~~~~~i~~A-~~~gadlvvfPE~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~g~ 97 (287)
T cd07568 29 IQKHVTMIREA-AEAGAQIVCLQEIF-YGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMVLILPI 97 (287)
T ss_pred HHHHHHHHHHH-HHcCCcEEEccccc-CCCCCccccccchhhhcccCCCChHHHHHHHHHHHCCEEEEEEe
Confidence 44555555554 35789999988773 23211 0000111 11 13468889999999999999743
No 485
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=31.41 E-value=1.1e+02 Score=31.96 Aligned_cols=69 Identities=17% Similarity=0.340 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec-cCCcCCCCcccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRKENEQLTVNSVFGS 191 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk~ek~p~lsDLrgS 191 (291)
..+..++.+. .+-+++++|+-. .+ .|- .....+++.|+++|++ +..|+++.| |+.
T Consensus 173 kRvsia~aL~--~~p~vlllDEPt--sg-----LD~-~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~------------- 228 (617)
T TIGR00955 173 KRLAFASELL--TDPPLLFCDEPT--SG-----LDS-FMAYSVVQVLKGLAQK-GKTIICTIHQPSS------------- 228 (617)
T ss_pred hHHHHHHHHH--cCCCEEEeeCCC--cc-----hhH-HHHHHHHHHHHHHHhC-CCEEEEEeCCCCH-------------
Confidence 3445555543 456889999983 22 121 3345789999999975 899999988 553
Q ss_pred ccccccCccEEEEEc
Q psy4520 192 AKATQESDNVLIIQQ 206 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R 206 (291)
.+.+.+|.|++|..
T Consensus 229 -~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 229 -ELFELFDKIILMAE 242 (617)
T ss_pred -HHHHHhceEEEeeC
Confidence 25677888888864
No 486
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.39 E-value=3.5e+02 Score=24.16 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=40.2
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .|. .....+.+.|+.+++ +..|++++|.... +.+-||.|++
T Consensus 164 ~~~p~llllDEPt--~~-----LD~-~~~~~l~~~l~~~~~--~~tii~vsH~~~~--------------~~~~~d~i~~ 219 (252)
T PRK14255 164 AVKPDVILLDEPT--SA-----LDP-ISSTQIENMLLELRD--QYTIILVTHSMHQ--------------ASRISDKTAF 219 (252)
T ss_pred hcCCCEEEEcCCC--cc-----CCH-HHHHHHHHHHHHHHh--CCEEEEEECCHHH--------------HHHhCCEEEE
Confidence 4567899999983 21 122 334567777888765 3789999996542 5567888888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 220 l~~ 222 (252)
T PRK14255 220 FLT 222 (252)
T ss_pred EEC
Confidence 854
No 487
>PRK13695 putative NTPase; Provisional
Probab=31.39 E-value=92 Score=26.36 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=28.5
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
.+.+++|||+..-+.. .+ ..+.+.|..+. +.+.||++++|.+.
T Consensus 95 ~~~~~lllDE~~~~e~-----~~-----~~~~~~l~~~~-~~~~~~i~v~h~~~ 137 (174)
T PRK13695 95 EEADVIIIDEIGKMEL-----KS-----PKFVKAVEEVL-DSEKPVIATLHRRS 137 (174)
T ss_pred CCCCEEEEECCCcchh-----hh-----HHHHHHHHHHH-hCCCeEEEEECchh
Confidence 3688999998632110 01 22456666666 78999999999643
No 488
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.33 E-value=3.2e+02 Score=22.98 Aligned_cols=64 Identities=19% Similarity=0.338 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccc
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKA 194 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~I 194 (291)
+..++.+ -.+-+++++|+-. .+. |. .....+.+.|+.+++ +..|++++|.... +
T Consensus 105 l~la~al--~~~p~llllDEP~--~gL-----D~-~~~~~l~~~l~~~~~--~~tii~~sh~~~~--------------~ 158 (171)
T cd03228 105 IAIARAL--LRDPPILILDEAT--SAL-----DP-ETEALILEALRALAK--GKTVIVIAHRLST--------------I 158 (171)
T ss_pred HHHHHHH--hcCCCEEEEECCC--cCC-----CH-HHHHHHHHHHHHhcC--CCEEEEEecCHHH--------------H
Confidence 3444443 3467899999983 211 21 334567777777754 5888999996442 4
Q ss_pred cccCccEEEEE
Q psy4520 195 TQESDNVLIIQ 205 (291)
Q Consensus 195 eQdAD~Vi~L~ 205 (291)
+. ||.++.+.
T Consensus 159 ~~-~d~~~~l~ 168 (171)
T cd03228 159 RD-ADRIIVLD 168 (171)
T ss_pred Hh-CCEEEEEc
Confidence 45 88888775
No 489
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.30 E-value=2e+02 Score=25.79 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|.+ -.+-+++++|+-. .+ .|. .....+.+.|+++++ +..|++++|....
T Consensus 155 r~~laral--~~~p~llllDEP~--~~-----LD~-~~~~~l~~~l~~~~~--~~tiiiisH~~~~-------------- 208 (251)
T PRK14251 155 RICIARAL--AVRPKVVLLDEPT--SA-----LDP-ISSSEIEETLMELKH--QYTFIMVTHNLQQ-------------- 208 (251)
T ss_pred HHHHHHHH--hcCCCEEEecCCC--cc-----CCH-HHHHHHHHHHHHHHc--CCeEEEEECCHHH--------------
Confidence 33444444 3567999999983 21 121 334567777777754 5889999995332
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 209 ~~~~~d~i~~l~~ 221 (251)
T PRK14251 209 AGRISDQTAFLMN 221 (251)
T ss_pred HHhhcCEEEEEEC
Confidence 4556888888864
No 490
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.22 E-value=2.7e+02 Score=25.71 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=40.2
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+ .|. ..+..+.+.|+.+++ +..|++++|.... +.+-||.|+.
T Consensus 179 ~~~p~lllLDEPt--~~-----LD~-~~~~~l~~~L~~~~~--~~tiiivsH~~~~--------------~~~~~dri~~ 234 (276)
T PRK14271 179 AVNPEVLLLDEPT--SA-----LDP-TTTEKIEEFIRSLAD--RLTVIIVTHNLAQ--------------AARISDRAAL 234 (276)
T ss_pred hcCCCEEEEcCCc--cc-----CCH-HHHHHHHHHHHHHhc--CCEEEEEeCCHHH--------------HHHhCCEEEE
Confidence 3567899999983 11 121 334567777888775 3799999995432 5567888888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
|..
T Consensus 235 l~~ 237 (276)
T PRK14271 235 FFD 237 (276)
T ss_pred EEC
Confidence 864
No 491
>COG1623 Predicted nucleic-acid-binding protein (contains the HHH domain) [General function prediction only]
Probab=31.22 E-value=29 Score=33.66 Aligned_cols=95 Identities=14% Similarity=-0.008 Sum_probs=54.2
Q ss_pred CCeEEEcCCCCCCHHHHHHHHHH--H-HHhCCCcEEEEeccccccCCCC-CCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 98 LPMYFLTFHGPQPLKLVMEAVEH--A-MYVYDTGHVIIDNVQFMLGLSD-SALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 98 ~pl~i~d~~g~~~i~~i~~~~r~--~-~~~~gv~lviIDyLqlm~~~~~-~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
--+|++-.. +...+.+.++. + +...++.=|+==|.|++.+..- ..++ +.==|.-.+.||+.++|||++
T Consensus 54 GGF~ld~~f---sa~~lyEL~KMDGAIILs~D~~kI~yANvqL~PD~sipT~Et-----GtRHRTAER~AkqTG~~VIai 125 (349)
T COG1623 54 GGFSLDVDF---SATRLYELAKMDGAIILSDDGSKILYANVQLVPDPSIPTDET-----GTRHRTAERVAKQTGNPVIAI 125 (349)
T ss_pred CcEEEeccC---CHHHHHHHHhcCCcEEEcCccceeeeeeeeecCCCCCCCCCC-----ccccchHHHHHHHhCCeEEEE
Confidence 346776543 45555554432 1 1223344555567787754321 1111 111345568899999999999
Q ss_pred eccCCcC---CCCccccccccccccccCcc
Q psy4520 174 IHPRKEN---EQLTVNSVFGSAKATQESDN 200 (291)
Q Consensus 174 shpRk~e---k~p~lsDLrgSg~IeQdAD~ 200 (291)
||.|++= +.-.-+=|+.++.|-..|-.
T Consensus 126 S~rrNvITlY~~~~ky~L~d~~~il~ranQ 155 (349)
T COG1623 126 SERRNVITLYVGNLKYVLKDSAFILSRANQ 155 (349)
T ss_pred ecccceEEEEecCeeeeecChHHHHHHHHH
Confidence 9999874 33344556666666555543
No 492
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.10 E-value=3e+02 Score=24.05 Aligned_cols=58 Identities=14% Similarity=0.306 Sum_probs=39.2
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEE
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~ 203 (291)
-.+-+++++|+-. .+- |. .....+...|+.++ + +..|++++|.... ++ .||.|++
T Consensus 155 ~~~p~llllDEP~--~~L-----D~-~~~~~l~~~l~~~~-~-~~tii~~sh~~~~--------------~~-~~d~i~~ 209 (229)
T cd03254 155 LRDPKILILDEAT--SNI-----DT-ETEKLIQEALEKLM-K-GRTSIIIAHRLST--------------IK-NADKILV 209 (229)
T ss_pred hcCCCEEEEeCcc--ccC-----CH-HHHHHHHHHHHHhc-C-CCEEEEEecCHHH--------------Hh-hCCEEEE
Confidence 4567999999983 221 21 23456777888885 3 8899999995442 33 3888888
Q ss_pred EEc
Q psy4520 204 IQQ 206 (291)
Q Consensus 204 L~R 206 (291)
+..
T Consensus 210 l~~ 212 (229)
T cd03254 210 LDD 212 (229)
T ss_pred EeC
Confidence 864
No 493
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=31.05 E-value=2.2e+02 Score=26.52 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=46.8
Q ss_pred HHhCCC--cEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhc-CceEEEEeccCCcC---CCCcccccccccccc
Q psy4520 122 MYVYDT--GHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRS-HCHVTLVIHPRKEN---EQLTVNSVFGSAKAT 195 (291)
Q Consensus 122 ~~~~gv--~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~-~VpVilvshpRk~e---k~p~lsDLrgSg~Ie 195 (291)
..++|+ +-||||++ +.. .+ + + ....-+.++.++.|...+ ++|+++ -.+|+.. .|+.++.+.=.-+++
T Consensus 147 a~~~GI~~~~IilDPg-i~~-~~-~--~-~~~~~~~l~~i~~l~~~~pg~p~l~-G~Sn~Sfglp~r~~in~~fl~~a~~ 219 (261)
T PRK07535 147 ADEYGIPPEDIYIDPL-VLP-LS-A--A-QDAGPEVLETIRRIKELYPKVHTTC-GLSNISFGLPNRKLINRAFLVMAMG 219 (261)
T ss_pred HHHcCCCHhHEEEeCC-CCc-cc-C--C-hHHHHHHHHHHHHHHHhCCCCCEEE-EeCCCccCCcchHHHHHHHHHHHHH
Confidence 357999 58999999 331 11 1 1 122345788888888877 899874 3456665 666666555555555
Q ss_pred ccCccEEE
Q psy4520 196 QESDNVLI 203 (291)
Q Consensus 196 QdAD~Vi~ 203 (291)
.-.|-.|+
T Consensus 220 ~Gl~~aI~ 227 (261)
T PRK07535 220 AGMDSAIL 227 (261)
T ss_pred cCCCEEee
Confidence 55555544
No 494
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=30.88 E-value=74 Score=31.60 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
-++-|++...--.+-.+.|+|| .+.+ ..|.+...+...-.+-+.|+.++|||++++=...
T Consensus 267 G~d~v~~~~~l~~~l~~ADlVI-------TGEG--~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v~ 326 (375)
T TIGR00045 267 GIDLVLELLDLEQKIKDADLVI-------TGEG--RLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGSLG 326 (375)
T ss_pred HHHHHHHhhCHHHHhcCCCEEE-------ECCC--cccccccCCchHHHHHHHHHHhCCeEEEEecccC
Confidence 3455555554434445677665 3322 2455556677888888999999999999986443
No 495
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=30.84 E-value=59 Score=32.32 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
-++.|.+...-...-.++|+||- +.+. .|.+...+...-.+.++||.+++|||+++-+
T Consensus 268 Gi~iV~~~~~le~~v~daDLVIT-------GEGr--~D~Qs~~GK~pigVA~~Akk~~vPvIaiaGs 325 (378)
T COG1929 268 GIEIVLEATNLEDAVKDADLVIT-------GEGR--IDSQSLHGKTPIGVAKLAKKYGVPVIAIAGS 325 (378)
T ss_pred cHHHHHHHhCHHHhhccCCEEEe-------CCCc--ccccccCCccchHHHHhhhhhCCCEEEEecc
Confidence 46666666655556678888872 2221 2334444556778889999999999999864
No 496
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=30.84 E-value=1.3e+02 Score=27.94 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=18.7
Q ss_pred HHHHhcCceEEEEeccCCcCCCCcccc
Q psy4520 161 AFASRSHCHVTLVIHPRKENEQLTVNS 187 (291)
Q Consensus 161 ~~Ake~~VpVilvshpRk~ek~p~lsD 187 (291)
.-|+++||||++|..|.-....+..++
T Consensus 213 ~AA~~lgi~vivI~RP~~~~~~~~~~~ 239 (249)
T PF02571_consen 213 EAARELGIPVIVIKRPPEPYGDPVVET 239 (249)
T ss_pred HHHHHcCCeEEEEeCCCCCCCCcccCC
Confidence 569999999999977655443333333
No 497
>PTZ00293 thymidine kinase; Provisional
Probab=30.80 E-value=94 Score=28.41 Aligned_cols=62 Identities=13% Similarity=-0.005 Sum_probs=37.8
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLII 204 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L 204 (291)
..+++|+||+-|++. + +-++++ .+...|+||++-.....-..+| .-+|..+--.||.|.=|
T Consensus 76 ~~~dvI~IDEaQFf~-------~----i~~~~~----~l~~~g~~VivaGLd~Df~~~~----F~~~~~Ll~~AD~V~kl 136 (211)
T PTZ00293 76 KNYDVIAIDEGQFFP-------D----LVEFSE----AAANLGKIVIVAALDGTFQRKP----FGQILNLIPLAERVTKL 136 (211)
T ss_pred cCCCEEEEEchHhhH-------h----HHHHHH----HHHHCCCeEEEEecCcccccCc----CccHHHHHHhhCEEEEc
Confidence 458999999999962 1 222333 3337899999887743333222 23344455578877655
Q ss_pred E
Q psy4520 205 Q 205 (291)
Q Consensus 205 ~ 205 (291)
.
T Consensus 137 ~ 137 (211)
T PTZ00293 137 T 137 (211)
T ss_pred c
Confidence 3
No 498
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.70 E-value=2.6e+02 Score=25.62 Aligned_cols=25 Identities=4% Similarity=-0.067 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEec
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDN 134 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDy 134 (291)
.+..+|.+..+. .++++++.|+.++
T Consensus 201 ps~~~l~~l~~~-ik~~~v~~if~e~ 225 (266)
T cd01018 201 PSPADLKRLIDL-AKEKGVRVVFVQP 225 (266)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEEcC
Confidence 345555444443 3555555555443
No 499
>cd03602 CLECT_1 C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. CLECT_1: C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces including CaCO3 and ice. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. CTLDs associate with each other through several different surfaces to form dimers, trimers, or tetramers from which ligand-binding sites project in differe
Probab=30.68 E-value=31 Score=26.66 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=26.5
Q ss_pred CCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 250 RRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
.+..++.++.++|...||+++.-.|++-+-|+
T Consensus 7 ~~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 38 (108)
T cd03602 7 NESKTWSEAQQYCRENYTDLATVQNQEDNALL 38 (108)
T ss_pred ccccCHHHHHHHHHHHCCccCeecCHHHHHHH
Confidence 46789999999999999999998887654443
No 500
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=30.66 E-value=2.7e+02 Score=25.61 Aligned_cols=127 Identities=11% Similarity=-0.024 Sum_probs=69.1
Q ss_pred HHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccc-cchhhhhccccccccccCCCCchhHHHHHhhccch
Q psy4520 4 YSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKF-DEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLL 82 (291)
Q Consensus 4 ~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 82 (291)
....+..+|..|.+++.=+.+.+++-+.++.... +........ ..+ ++
T Consensus 112 ~l~~a~~~g~gvIl~t~H~GnwE~~~~~l~~~~~-~~~~i~~~~~n~~-------------------~~----------- 160 (295)
T PF03279_consen 112 HLEAALAEGRGVILLTGHFGNWELAGRALARRGP-PVAVIYRPQKNPY-------------------ID----------- 160 (295)
T ss_pred HHHHHHhcCCCCEEeCcCcChHHHHHHHHHhhCC-ceEEEecCCccHh-------------------HH-----------
Confidence 3445557899999999999999998888877544 433221111 111 01
Q ss_pred hhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHH
Q psy4520 83 DNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAF 162 (291)
Q Consensus 83 ~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~ 162 (291)
..+.+..... .+-+.+..+ .++..++.+ ++.++=.+++|.- ......-..+-...-.......-.|
T Consensus 161 ---~~~~~~R~~~---g~~~i~~~~-----~~~~~~~~L-k~g~~v~~l~Dq~--~~~~~~~~v~FfG~~a~~~~g~a~l 226 (295)
T PF03279_consen 161 ---RLLNKLRERF---GIELIPKGE-----GIRELIRAL-KEGGIVGLLGDQD--PGKKDGVFVPFFGRPASTPTGPARL 226 (295)
T ss_pred ---HHHHHHHHhc---CCeEecchh-----hHHHHHHHh-ccCCEEEEEECCC--CCCCCceEEeECCeecccccHHHHH
Confidence 1111222222 233333221 156666554 5556667777853 1111000011122234468889999
Q ss_pred HHhcCceEEEEec
Q psy4520 163 ASRSHCHVTLVIH 175 (291)
Q Consensus 163 Ake~~VpVilvsh 175 (291)
|..+|+||+.+.-
T Consensus 227 A~~~~apvvp~~~ 239 (295)
T PF03279_consen 227 ARKTGAPVVPVFA 239 (295)
T ss_pred HHHhCCcEEEEEE
Confidence 9999999997754
Done!