Query psy4520
Match_columns 291
No_of_seqs 151 out of 733
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:17:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4520.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4520hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a1f_A DNAB helicase, replicat 100.0 1.2E-45 4.1E-50 351.4 11.7 206 2-250 64-317 (338)
2 3bgw_A DNAB-like replicative h 100.0 1.9E-39 6.3E-44 317.7 19.5 211 2-256 215-442 (444)
3 3bh0_A DNAB-like replicative h 100.0 6.5E-38 2.2E-42 292.7 20.3 211 2-256 86-313 (315)
4 2q6t_A DNAB replication FORK h 100.0 7.4E-37 2.5E-41 297.5 22.6 207 2-250 218-440 (444)
5 2r6a_A DNAB helicase, replicat 100.0 2.1E-34 7.3E-39 280.8 19.3 210 2-253 221-444 (454)
6 1q57_A DNA primase/helicase; d 100.0 3.1E-33 1E-37 275.1 21.3 208 2-252 260-484 (503)
7 1cr0_A DNA primase/helicase; R 99.9 1.1E-24 3.8E-29 199.0 17.8 213 3-253 54-278 (296)
8 2zts_A Putative uncharacterize 99.8 6.1E-20 2.1E-24 160.5 13.3 179 3-236 49-230 (251)
9 3cmw_A Protein RECA, recombina 99.7 4E-16 1.4E-20 172.7 16.0 166 3-240 751-933 (1706)
10 1xp8_A RECA protein, recombina 99.6 2.1E-14 7.2E-19 137.5 16.8 120 110-237 136-273 (366)
11 3cmu_A Protein RECA, recombina 99.6 1E-14 3.5E-19 163.3 15.6 168 3-240 402-584 (2050)
12 2dr3_A UPF0273 protein PH0284; 99.6 1.2E-14 4.2E-19 126.7 12.7 178 3-236 42-219 (247)
13 1v5w_A DMC1, meiotic recombina 99.6 3.5E-14 1.2E-18 133.8 14.5 127 100-236 191-328 (343)
14 3cmw_A Protein RECA, recombina 99.5 5.2E-14 1.8E-18 156.0 17.0 169 3-241 402-585 (1706)
15 2cvh_A DNA repair and recombin 99.5 4.6E-13 1.6E-17 115.0 15.6 126 100-237 80-206 (220)
16 2i1q_A DNA repair and recombin 99.5 6.8E-14 2.3E-18 129.5 11.0 127 100-236 177-310 (322)
17 2z43_A DNA repair and recombin 99.5 2.1E-13 7.3E-18 127.0 12.3 127 100-236 176-309 (324)
18 1u94_A RECA protein, recombina 99.5 1E-12 3.5E-17 125.3 17.0 119 110-236 125-260 (356)
19 1nlf_A Regulatory protein REPA 99.3 5.1E-10 1.7E-14 101.2 21.5 110 116-236 125-248 (279)
20 1n0w_A DNA repair protein RAD5 99.3 1.1E-10 3.6E-15 101.6 14.6 107 114-224 107-222 (243)
21 2w0m_A SSO2452; RECA, SSPF, un 99.2 3.3E-10 1.1E-14 97.1 17.0 165 3-224 42-208 (235)
22 2zr9_A Protein RECA, recombina 99.2 3.5E-10 1.2E-14 107.2 17.5 113 110-224 123-252 (349)
23 3cmu_A Protein RECA, recombina 99.1 3E-10 1E-14 127.6 14.5 106 99-207 786-901 (2050)
24 3lda_A DNA repair protein RAD5 99.0 1.7E-09 5.7E-14 104.7 12.9 114 113-236 260-382 (400)
25 3hr8_A Protein RECA; alpha and 98.9 1.1E-07 3.9E-12 90.6 18.2 123 109-237 122-259 (356)
26 4a74_A DNA repair and recombin 98.5 7.8E-07 2.7E-11 76.3 11.1 102 115-236 109-219 (231)
27 1pzn_A RAD51, DNA repair and r 98.0 9.9E-05 3.4E-09 69.5 14.1 116 111-236 211-337 (349)
28 3io5_A Recombination and repai 97.9 0.00036 1.2E-08 66.1 15.7 111 110-224 92-223 (333)
29 1tf7_A KAIC; homohexamer, hexa 97.9 0.00026 8.9E-09 69.8 15.1 105 108-224 353-459 (525)
30 2ehv_A Hypothetical protein PH 97.7 0.00082 2.8E-08 57.9 14.1 106 109-224 118-224 (251)
31 3bs4_A Uncharacterized protein 97.1 0.0025 8.5E-08 58.2 10.0 39 2-42 39-77 (260)
32 2b8t_A Thymidine kinase; deoxy 94.6 0.023 8E-07 50.4 3.9 77 111-205 74-150 (223)
33 2vhj_A Ntpase P4, P4; non- hyd 91.5 0.52 1.8E-05 44.4 8.1 67 110-178 168-237 (331)
34 1bwv_A Rubisco, protein (ribul 89.1 2.8 9.7E-05 41.5 11.3 70 86-172 232-301 (493)
35 2qv5_A AGR_C_5032P, uncharacte 87.9 3 0.0001 37.9 9.8 115 22-179 107-222 (261)
36 1tf7_A KAIC; homohexamer, hexa 87.4 5.5 0.00019 38.8 12.2 104 111-224 123-226 (525)
37 3kdn_A Rubisco, ribulose bisph 86.7 3.6 0.00012 40.2 10.3 70 86-172 211-280 (444)
38 2nly_A BH1492 protein, diverge 86.1 3.7 0.00013 36.9 9.4 112 21-179 79-196 (245)
39 1wdd_A Ribulose bisphosphate c 85.2 4.2 0.00014 40.1 9.9 71 86-172 223-293 (477)
40 2d69_A Ribulose bisphosphate c 83.3 5.2 0.00018 38.9 9.6 70 86-172 208-277 (430)
41 4f0h_A Ribulose bisphosphate c 82.4 8 0.00027 38.3 10.6 70 86-172 232-301 (493)
42 3qfw_A Ribulose-1,5-bisphospha 82.3 7 0.00024 37.4 9.9 47 86-135 186-232 (378)
43 3nwr_A A rubisco-like protein; 80.9 12 0.0004 36.5 11.0 47 86-135 217-263 (432)
44 3bdw_A Natural killer cells an 80.8 2 6.8E-05 32.9 4.6 49 232-282 5-53 (123)
45 2yhf_A C-type lectin domain fa 80.8 1.1 3.7E-05 34.1 3.0 47 233-281 3-49 (118)
46 1dv8_A Asialoglycoprotein rece 79.5 1.2 4.1E-05 34.2 2.9 43 238-281 6-48 (128)
47 3ff9_A Killer cell lectin-like 78.4 1.6 5.5E-05 33.1 3.4 47 233-281 3-49 (115)
48 3g8k_A Lectin-related NK cell 78.3 1.1 3.7E-05 34.6 2.4 48 232-281 7-54 (130)
49 3rs1_A C-type lectin domain fa 78.0 1.5 5.2E-05 33.5 3.2 50 231-282 7-56 (122)
50 2e3x_C Coagulation factor X-ac 77.4 2 6.8E-05 32.6 3.7 48 232-281 3-52 (122)
51 1hq8_A NKG2-D; homodimer, CIS- 77.3 1.9 6.5E-05 33.1 3.5 49 232-282 6-54 (123)
52 2ox9_A Collectin placenta 1; C 76.7 1.7 5.9E-05 33.9 3.2 49 232-282 5-53 (140)
53 3ubu_B Agglucetin subunit beta 76.7 1.3 4.4E-05 33.7 2.4 48 232-281 4-53 (126)
54 3ff7_C Killer cell lectin-like 76.4 1.8 6.1E-05 32.6 3.1 44 237-281 5-48 (112)
55 1g6h_A High-affinity branched- 76.0 16 0.00054 32.1 9.6 69 113-206 160-228 (257)
56 2zvi_A 2,3-diketo-5-methylthio 76.0 8.7 0.0003 37.3 8.5 69 86-172 209-277 (425)
57 1ypq_A Oxidised low density li 75.7 1.7 5.9E-05 33.6 2.9 49 232-282 9-57 (135)
58 1mpu_A NKG2-D type II integral 75.0 2 6.7E-05 33.7 3.1 49 232-282 21-69 (138)
59 2vuv_A Codakine; sugar-binding 74.5 1.5 5E-05 33.8 2.2 47 233-281 3-49 (129)
60 3gpr_C Rhodocetin subunit gamm 74.4 1.8 6E-05 33.5 2.6 48 232-281 3-52 (134)
61 3m9z_A Killer cell lectin-like 74.3 2 6.8E-05 33.4 3.0 48 232-281 6-53 (139)
62 2zib_A Type II antifreeze prot 73.7 1.7 5.9E-05 34.0 2.5 44 237-281 14-57 (133)
63 3bdw_B NKG2-A/NKG2-B type II i 72.9 1.3 4.6E-05 33.7 1.6 48 232-281 7-54 (120)
64 1jwi_A Bitiscetin; domain swap 72.9 1.7 5.9E-05 33.3 2.2 49 232-282 4-52 (131)
65 3gpr_D Rhodocetin subunit delt 72.9 1.3 4.4E-05 33.8 1.4 43 238-281 6-50 (124)
66 3ubu_A Agglucetin subunit alph 72.6 2 6.7E-05 32.9 2.5 49 232-282 4-54 (131)
67 1oz7_B Echicetin B-chain; plat 72.5 2.1 7.2E-05 32.5 2.6 48 233-282 3-52 (123)
68 4g1u_C Hemin import ATP-bindin 72.2 10 0.00036 33.7 7.5 75 111-207 146-224 (266)
69 2bpd_A Dectin-1; receptor, bet 71.6 1.9 6.5E-05 34.0 2.2 48 232-281 17-64 (142)
70 1tdq_B Aggrecan core protein; 71.5 2 6.9E-05 32.8 2.3 49 231-281 6-54 (130)
71 3kqg_A Langerin, C-type lectin 71.4 1.7 5.9E-05 35.7 2.0 48 232-281 49-96 (182)
72 1j34_A Coagulation factor IX-b 71.3 2.1 7.1E-05 32.5 2.3 47 233-281 3-51 (129)
73 3vpp_A C-type lectin domain fa 71.0 2.7 9.1E-05 32.3 2.9 49 232-282 4-52 (132)
74 1j34_B Coagulation factor IX-b 71.0 2.2 7.4E-05 32.4 2.4 47 233-281 3-51 (123)
75 3gfo_A Cobalt import ATP-bindi 70.7 32 0.0011 30.8 10.5 70 113-206 150-219 (275)
76 3e2i_A Thymidine kinase; Zn-bi 70.7 4 0.00014 36.2 4.3 63 125-205 100-162 (219)
77 2afp_A Protein (SEA raven type 70.7 1.8 6.3E-05 33.1 1.9 49 231-281 6-54 (129)
78 1egg_A Macrophage mannose rece 70.6 1.8 6.2E-05 33.8 1.9 50 232-281 5-58 (147)
79 1c3a_B Flavocetin-A: beta subu 70.2 2.4 8.1E-05 32.3 2.5 48 232-281 4-53 (125)
80 1jwi_B Platelet aggregation in 70.2 2.2 7.6E-05 32.6 2.3 48 232-281 4-53 (125)
81 2qyg_A Ribulose bisphosphate c 69.6 18 0.00063 35.3 9.1 47 86-135 240-286 (452)
82 1ykw_A Rubisco-like protein; b 69.4 20 0.00069 34.8 9.3 47 86-135 220-266 (435)
83 1ukm_A EMS16 A chain, EMS16 su 69.4 2.4 8.1E-05 32.5 2.3 48 232-281 4-53 (134)
84 2py2_A Antifreeze protein type 69.3 2.5 8.5E-05 33.0 2.4 48 232-281 4-51 (136)
85 1fvu_B Botrocetin beta chain; 69.3 2.4 8.3E-05 32.1 2.3 48 233-282 3-52 (125)
86 3bx4_A Aggretin alpha chain; t 69.2 2.4 8.3E-05 32.7 2.3 48 232-281 5-54 (136)
87 1fvu_A Botrocetin alpha chain; 68.7 2.7 9.2E-05 32.2 2.5 47 233-281 3-52 (133)
88 2kv3_A Regenerating islet-deri 68.7 2.5 8.5E-05 32.3 2.3 48 232-281 3-52 (131)
89 1sl6_A C-type lectin DC-signr; 68.4 3.3 0.00011 34.4 3.2 50 231-282 52-101 (184)
90 3c22_A C-type lectin domain fa 67.8 3.2 0.00011 33.1 2.8 49 231-281 22-70 (156)
91 1oz7_A Echicetin A-chain; plat 67.7 2.6 9E-05 32.2 2.2 47 233-281 3-51 (131)
92 1qdd_A Lithostathine; pancreat 67.6 2.7 9.3E-05 32.7 2.3 49 231-281 13-62 (144)
93 2oem_A 2,3-diketo-5-methylthio 66.9 36 0.0012 32.8 10.5 47 86-135 195-241 (413)
94 2e3x_B Coagulation factor X-ac 66.7 3.5 0.00012 31.6 2.8 49 232-282 3-53 (134)
95 3hup_A Early activation antige 66.7 3.1 0.00011 32.1 2.5 49 231-281 15-63 (130)
96 2xr6_A CD209 antigen; sugar bi 66.3 3.6 0.00012 33.5 2.9 50 231-282 21-70 (170)
97 2c6u_A CLEC1B protein; lectin, 66.2 2.9 9.9E-05 31.9 2.2 48 232-281 3-50 (122)
98 1sb2_B Rhodocetin beta subunit 66.1 3 0.0001 32.0 2.3 49 232-282 4-54 (129)
99 1ukm_B EMS16 B chain, EMS16 su 65.8 3 0.0001 31.8 2.2 43 238-281 6-50 (128)
100 1sb2_A Rhodocetin alpha subuni 65.7 3.2 0.00011 31.7 2.4 47 233-281 3-51 (133)
101 3lqy_A Putative isochorismatas 65.1 13 0.00046 31.1 6.4 49 127-175 8-59 (190)
102 1c3a_A Flavocetin-A: alpha sub 65.0 3.2 0.00011 31.9 2.2 48 232-281 4-53 (135)
103 2yz2_A Putative ABC transporte 64.3 58 0.002 28.6 10.8 68 114-206 146-213 (266)
104 1wk1_A Hypothetical protein YK 64.2 1.2 4.2E-05 35.4 -0.3 41 240-281 3-46 (150)
105 1umr_C Convulxin beta, CVX bet 64.0 3.8 0.00013 31.1 2.5 49 232-282 4-54 (125)
106 4f2d_A L-arabinose isomerase; 63.8 44 0.0015 32.8 10.7 73 91-179 37-111 (500)
107 1fm5_A Early activation antige 63.5 4.3 0.00015 34.4 2.9 48 232-281 85-132 (199)
108 1uv0_A Pancreatitis-associated 63.3 4 0.00014 31.9 2.6 50 231-282 13-63 (149)
109 1umr_A Convulxin alpha, CVX al 62.9 3.6 0.00012 31.7 2.2 49 232-282 4-54 (135)
110 1jzn_A Galactose-specific lect 62.1 3.1 0.00011 31.8 1.6 48 232-281 3-52 (135)
111 3bx4_B Aggretin beta chain; to 61.6 4 0.00014 32.0 2.3 49 232-282 25-75 (146)
112 3tui_C Methionine import ATP-b 61.4 33 0.0011 32.4 8.9 70 113-206 170-239 (366)
113 1tn3_A Tetranectin; plasminoge 61.2 2.6 8.8E-05 32.5 1.0 47 232-281 6-52 (137)
114 4h17_A Hydrolase, isochorismat 60.9 17 0.00057 30.9 6.2 49 127-176 24-72 (197)
115 3tg2_A Vibriobactin-specific i 60.6 11 0.00038 32.8 5.2 50 127-176 29-78 (223)
116 3g8l_A Lectin-related NK cell 60.3 3.6 0.00012 34.6 1.8 44 237-281 71-114 (190)
117 3pbf_A Pulmonary surfactant-as 60.2 3.4 0.00012 32.7 1.6 44 237-281 31-74 (148)
118 2h2t_B Low affinity immunoglob 59.6 3.5 0.00012 33.9 1.6 49 231-281 16-64 (175)
119 1hup_A Mannose-binding protein 59.3 3.4 0.00011 32.5 1.4 43 238-281 25-67 (141)
120 1gz2_A Ovocleidin-17, OC-17 ov 58.7 4.1 0.00014 31.4 1.8 48 232-281 5-54 (142)
121 2orw_A Thymidine kinase; TMTK, 57.8 8.6 0.0003 32.1 3.8 61 126-204 76-136 (184)
122 2b6b_D CD209 antigen; cryo EM 57.7 4.9 0.00017 33.2 2.2 50 231-282 26-75 (175)
123 2a67_A Isochorismatase family 57.2 21 0.00072 29.2 6.1 49 127-176 5-53 (167)
124 2ls8_A C-type lectin domain fa 61.4 2.3 7.9E-05 34.1 0.0 43 239-282 9-51 (156)
125 3p94_A GDSL-like lipase; serin 56.5 46 0.0016 26.5 8.0 62 110-171 95-159 (204)
126 3rlf_A Maltose/maltodextrin im 56.2 31 0.0011 32.7 7.8 71 112-206 139-209 (381)
127 1xx6_A Thymidine kinase; NESG, 55.8 16 0.00056 30.9 5.3 61 126-204 81-141 (191)
128 1w4r_A Thymidine kinase; type 55.6 31 0.0011 29.7 7.1 60 126-204 91-150 (195)
129 2fq1_A Isochorismatase; ENTB, 55.5 16 0.00056 32.6 5.5 50 127-176 33-82 (287)
130 1oxx_K GLCV, glucose, ABC tran 55.2 26 0.00089 32.6 7.0 70 113-206 147-216 (353)
131 2nq2_C Hypothetical ABC transp 55.1 45 0.0015 29.2 8.2 70 113-206 135-204 (253)
132 3c8j_A Natural killer cell rec 54.7 6 0.00021 33.7 2.4 44 237-281 84-127 (203)
133 3ot4_A Putative isochorismatas 54.7 17 0.00059 31.9 5.4 49 127-175 45-93 (236)
134 2ihy_A ABC transporter, ATP-bi 54.5 62 0.0021 28.8 9.2 69 113-206 168-238 (279)
135 1wmz_A Lectin CEL-I, N-acetyl- 53.0 4.7 0.00016 31.2 1.3 48 232-281 3-57 (140)
136 1z47_A CYSA, putative ABC-tran 52.6 37 0.0013 31.7 7.6 55 113-177 152-206 (355)
137 1v43_A Sugar-binding transport 52.6 39 0.0013 31.7 7.8 71 112-206 147-217 (372)
138 3rjt_A Lipolytic protein G-D-S 52.6 42 0.0014 26.8 7.2 44 125-171 129-172 (216)
139 1b0u_A Histidine permease; ABC 52.6 41 0.0014 29.6 7.6 69 113-206 160-228 (262)
140 1f2t_B RAD50 ABC-ATPase; DNA d 52.6 78 0.0027 25.4 8.8 58 125-206 80-137 (148)
141 1g29_1 MALK, maltose transport 52.3 40 0.0014 31.6 7.9 71 112-206 145-215 (372)
142 1byf_A TC14, protein (polyandr 52.1 4.6 0.00016 30.8 1.1 39 242-281 2-42 (125)
143 2yyz_A Sugar ABC transporter, 52.0 42 0.0014 31.4 7.9 70 113-206 140-209 (359)
144 2olj_A Amino acid ABC transpor 52.0 53 0.0018 29.0 8.3 68 114-206 167-234 (263)
145 1im5_A 180AA long hypothetical 51.8 18 0.00063 29.8 4.9 48 128-175 5-52 (180)
146 1ji0_A ABC transporter; ATP bi 51.4 64 0.0022 27.8 8.6 69 113-206 146-214 (240)
147 2ixe_A Antigen peptide transpo 51.1 33 0.0011 30.4 6.7 73 109-206 157-231 (271)
148 3txy_A Isochorismatase family 50.9 20 0.00068 30.3 5.0 48 127-175 14-61 (199)
149 1nf9_A Phenazine biosynthesis 50.9 19 0.00067 30.4 5.0 47 127-175 32-78 (207)
150 3d31_A Sulfate/molybdate ABC t 50.2 35 0.0012 31.8 7.0 55 113-177 134-188 (348)
151 1htn_A Tetranectin; plasminoge 50.1 5.7 0.00019 32.8 1.4 47 232-281 51-97 (182)
152 2j9r_A Thymidine kinase; TK1, 50.0 13 0.00046 32.5 3.9 62 126-205 101-162 (214)
153 3tif_A Uncharacterized ABC tra 49.6 52 0.0018 28.3 7.7 69 113-206 152-220 (235)
154 3i42_A Response regulator rece 49.5 25 0.00085 25.7 4.9 52 110-176 35-86 (127)
155 2it1_A 362AA long hypothetical 49.5 41 0.0014 31.5 7.4 70 113-206 140-209 (362)
156 2onk_A Molybdate/tungstate ABC 49.2 46 0.0016 28.9 7.3 69 114-206 134-202 (240)
157 1yac_A Ycacgp, YCAC gene produ 48.9 26 0.00089 29.8 5.5 48 127-176 13-60 (208)
158 1vpl_A ABC transporter, ATP-bi 48.7 85 0.0029 27.5 9.0 69 113-206 153-221 (256)
159 1rtm_1 Mannose-binding protein 48.7 4.4 0.00015 32.2 0.5 41 240-281 35-75 (149)
160 3to5_A CHEY homolog; alpha(5)b 48.7 22 0.00076 28.2 4.7 42 123-175 54-95 (134)
161 3oqp_A Putative isochorismatas 48.4 31 0.0011 29.6 6.0 50 127-176 7-57 (211)
162 3hu5_A Isochorismatase family 48.0 29 0.00099 29.4 5.6 49 126-174 8-57 (204)
163 3ozx_A RNAse L inhibitor; ATP 47.6 48 0.0016 32.6 7.9 70 113-206 392-461 (538)
164 3grc_A Sensor protein, kinase; 47.2 29 0.001 25.8 5.1 51 110-175 38-88 (140)
165 3bzy_B ESCU; auto cleavage pro 47.2 10 0.00034 28.6 2.3 19 153-171 26-44 (83)
166 3fvq_A Fe(3+) IONS import ATP- 47.1 52 0.0018 30.8 7.7 71 112-206 144-214 (359)
167 3ivz_A Nitrilase; alpha-beta s 46.9 28 0.00095 30.2 5.5 61 111-173 20-86 (262)
168 2qi9_C Vitamin B12 import ATP- 46.7 25 0.00084 30.9 5.1 70 112-206 132-208 (249)
169 3eef_A N-carbamoylsarcosine am 46.5 34 0.0012 28.3 5.8 47 128-175 4-50 (182)
170 3alu_A Lectin CEL-IV, C-type; 46.4 6.3 0.00021 31.4 1.1 48 232-281 5-63 (157)
171 3t6k_A Response regulator rece 46.0 41 0.0014 25.2 5.8 52 110-176 36-87 (136)
172 3k13_A 5-methyltetrahydrofolat 45.3 36 0.0012 31.3 6.1 78 123-203 166-253 (300)
173 2vt1_B Surface presentation of 45.3 14 0.00046 28.5 2.8 19 153-171 26-44 (93)
174 2b34_A F35G2.2, MAR1 ribonucle 44.4 38 0.0013 28.6 5.8 45 127-175 15-59 (199)
175 1yqt_A RNAse L inhibitor; ATP- 44.4 55 0.0019 32.0 7.7 61 123-205 416-476 (538)
176 3fk4_A Rubisco-like protein; s 44.2 46 0.0016 32.1 7.0 47 86-135 196-242 (414)
177 3mcw_A Putative hydrolase; iso 44.0 16 0.00054 30.9 3.3 49 126-175 12-60 (198)
178 2d2e_A SUFC protein; ABC-ATPas 44.0 96 0.0033 26.8 8.6 71 111-206 148-219 (250)
179 1j2r_A Hypothetical isochorism 43.8 37 0.0013 28.3 5.6 47 127-174 20-66 (199)
180 3gl9_A Response regulator; bet 43.3 27 0.00091 25.7 4.2 43 123-176 43-85 (122)
181 1jbk_A CLPB protein; beta barr 43.2 28 0.00096 27.0 4.5 55 116-175 105-159 (195)
182 4ag6_A VIRB4 ATPase, type IV s 42.8 81 0.0028 28.8 8.3 71 127-207 263-335 (392)
183 3c01_E Surface presentation of 42.8 15 0.00051 28.6 2.7 19 153-171 26-44 (98)
184 3nhm_A Response regulator; pro 42.6 40 0.0014 24.7 5.1 51 110-175 35-85 (133)
185 3h1g_A Chemotaxis protein CHEY 42.3 29 0.00099 25.7 4.3 43 123-176 48-90 (129)
186 2ff7_A Alpha-hemolysin translo 42.3 1.5E+02 0.005 25.7 9.5 71 109-206 146-218 (247)
187 1pwb_A SP-D, PSP-D, pulmonary 42.0 8.9 0.00031 31.4 1.4 43 238-281 60-102 (177)
188 1buu_A Protein (mannose-bindin 41.7 6.8 0.00023 32.0 0.6 41 240-281 54-94 (168)
189 3thx_A DNA mismatch repair pro 41.2 1.2E+02 0.004 32.1 10.0 84 113-207 728-817 (934)
190 3t7y_A YOP proteins translocat 41.1 16 0.00056 28.3 2.7 20 152-171 40-59 (97)
191 2iut_A DNA translocase FTSK; n 41.0 19 0.00064 36.2 3.8 43 129-177 346-389 (574)
192 3kki_A CAI-1 autoinducer synth 40.9 46 0.0016 30.0 6.2 48 110-172 174-221 (409)
193 3p8k_A Hydrolase, carbon-nitro 40.9 51 0.0018 29.0 6.3 59 111-174 39-102 (281)
194 2ius_A DNA translocase FTSK; n 40.9 22 0.00075 35.1 4.2 43 129-177 300-343 (512)
195 3irv_A Cysteine hydrolase; str 40.7 25 0.00087 30.5 4.2 49 127-175 23-72 (233)
196 2zu0_C Probable ATP-dependent 40.6 81 0.0028 27.7 7.6 69 113-206 171-240 (267)
197 2msb_A Mannose-binding protein 40.5 7.2 0.00025 29.2 0.5 39 242-281 3-41 (115)
198 2p65_A Hypothetical protein PF 40.5 21 0.00072 27.9 3.4 54 118-175 107-160 (187)
199 3hkx_A Amidase; alpha-beta-BET 40.3 35 0.0012 30.1 5.1 60 111-174 39-103 (283)
200 4aby_A DNA repair protein RECN 40.1 69 0.0024 29.3 7.3 70 113-207 302-371 (415)
201 2orv_A Thymidine kinase; TP4A 40.0 68 0.0023 28.5 6.9 62 125-205 89-150 (234)
202 2m1z_A LMO0427 protein; homolo 40.0 22 0.00075 27.9 3.3 44 156-206 22-66 (106)
203 5rub_A Rubisco (ribulose-1,5-b 39.1 1E+02 0.0035 30.3 8.6 49 86-135 237-289 (490)
204 2pcj_A ABC transporter, lipopr 38.7 1.1E+02 0.0036 26.1 7.8 60 123-206 155-214 (224)
205 3gt7_A Sensor protein; structu 38.6 45 0.0015 25.6 5.0 43 123-176 48-90 (154)
206 2e7j_A SEP-tRNA:Cys-tRNA synth 38.5 80 0.0027 27.5 7.2 55 107-172 128-182 (371)
207 3bk7_A ABC transporter ATP-bin 38.4 95 0.0032 31.0 8.5 68 114-205 479-546 (607)
208 1g5t_A COB(I)alamin adenosyltr 38.0 1.5E+02 0.005 25.4 8.6 18 4-21 48-65 (196)
209 3heb_A Response regulator rece 37.7 41 0.0014 25.5 4.6 44 123-177 56-99 (152)
210 3rst_A Signal peptide peptidas 37.7 98 0.0033 26.8 7.6 59 109-175 29-87 (240)
211 3mm4_A Histidine kinase homolo 36.9 74 0.0025 26.0 6.4 41 125-176 118-160 (206)
212 3hv2_A Response regulator/HD d 36.9 74 0.0025 24.1 6.0 50 110-176 46-95 (153)
213 2qen_A Walker-type ATPase; unk 36.6 1.1E+02 0.0038 26.4 7.8 62 109-176 111-173 (350)
214 1yqt_A RNAse L inhibitor; ATP- 36.4 1.1E+02 0.0036 30.0 8.3 69 112-205 164-232 (538)
215 2dpl_A GMP synthetase, GMP syn 36.4 72 0.0025 28.8 6.7 66 112-177 61-130 (308)
216 3ilh_A Two component response 36.3 80 0.0027 23.2 6.0 57 110-177 43-102 (146)
217 3cnb_A DNA-binding response re 35.4 57 0.002 24.0 5.0 52 110-176 42-93 (143)
218 3c3m_A Response regulator rece 35.3 65 0.0022 23.9 5.3 51 110-175 35-85 (138)
219 4djd_D C/Fe-SP, corrinoid/iron 34.9 64 0.0022 30.0 6.1 66 97-172 180-251 (323)
220 3qf7_A RAD50; ABC-ATPase, ATPa 34.9 1.1E+02 0.0036 28.2 7.7 58 125-206 302-359 (365)
221 3bk7_A ABC transporter ATP-bin 34.7 1.1E+02 0.0038 30.4 8.3 68 113-205 235-302 (607)
222 3m6m_D Sensory/regulatory prot 34.3 1E+02 0.0036 23.1 6.5 52 110-176 46-99 (143)
223 1nba_A N-carbamoylsarcosine am 34.0 48 0.0016 29.5 5.0 48 128-175 46-94 (264)
224 4hf7_A Putative acylhydrolase; 33.8 1.9E+02 0.0064 23.5 8.4 48 123-171 115-164 (209)
225 2kyr_A Fructose-like phosphotr 33.7 32 0.0011 27.3 3.3 45 155-206 24-69 (111)
226 3cg4_A Response regulator rece 33.6 84 0.0029 23.1 5.7 52 110-176 39-90 (142)
227 2ghi_A Transport protein; mult 33.4 2.4E+02 0.0081 24.5 9.6 68 112-206 161-228 (260)
228 3dc7_A Putative uncharacterize 33.2 71 0.0024 26.2 5.7 61 113-173 115-180 (232)
229 3kht_A Response regulator; PSI 33.1 35 0.0012 25.5 3.5 43 123-176 48-90 (144)
230 1rdl_1 SUB-MBP-C, mannose-bind 33.1 19 0.00064 26.8 1.8 38 243-281 2-39 (113)
231 3h5i_A Response regulator/sens 32.8 1.2E+02 0.0042 22.4 6.6 40 124-176 48-87 (140)
232 3qkt_A DNA double-strand break 32.4 2.2E+02 0.0075 25.5 9.3 59 125-207 271-329 (339)
233 2a9k_A RAS-related protein RAL 32.4 95 0.0033 23.9 6.1 65 99-175 67-131 (187)
234 1sgw_A Putative ABC transporte 32.1 1.9E+02 0.0067 24.4 8.5 45 123-176 148-192 (214)
235 1u8z_A RAS-related protein RAL 32.1 1.4E+02 0.0048 22.3 6.9 65 99-175 53-117 (168)
236 3hb7_A Isochorismatase hydrola 31.9 51 0.0017 27.8 4.6 49 127-175 8-60 (204)
237 3b1s_B Flagellar biosynthetic 38.0 9.8 0.00033 28.9 0.0 20 152-171 25-44 (87)
238 2qtf_A Protein HFLX, GTP-bindi 31.5 39 0.0013 31.3 4.1 47 156-206 13-65 (364)
239 3j16_B RLI1P; ribosome recycli 31.2 1.1E+02 0.0037 30.6 7.5 69 114-206 475-543 (608)
240 1fnn_A CDC6P, cell division co 31.2 85 0.0029 27.8 6.2 59 109-176 107-168 (389)
241 3mcm_A 2-amino-4-hydroxy-6-hyd 31.0 44 0.0015 32.5 4.5 58 114-180 346-405 (442)
242 1w1w_A Structural maintenance 30.7 1.1E+02 0.0039 28.3 7.3 72 113-208 340-413 (430)
243 3c9u_A Thiamine monophosphate 30.3 96 0.0033 28.5 6.5 52 114-171 101-152 (342)
244 3cwc_A Putative glycerate kina 30.3 31 0.0011 33.0 3.2 58 110-176 271-328 (383)
245 3j16_B RLI1P; ribosome recycli 30.2 1.2E+02 0.0041 30.3 7.7 74 107-205 220-295 (608)
246 1x9g_A Putative MAR1; structur 30.0 87 0.003 26.5 5.8 45 127-175 21-67 (200)
247 2vp8_A Dihydropteroate synthas 30.0 69 0.0024 29.7 5.5 53 117-179 200-254 (318)
248 2w1v_A Nitrilase-2, nitrilase 29.9 83 0.0029 27.2 5.8 57 111-172 21-82 (276)
249 2zay_A Response regulator rece 29.9 57 0.002 24.3 4.2 52 110-176 40-91 (147)
250 4eq6_B Platinum sensitivity pr 29.8 3.1E+02 0.01 24.6 9.7 75 100-174 103-193 (256)
251 3vfd_A Spastin; ATPase, microt 29.6 2.9E+02 0.01 25.0 9.8 84 91-175 167-258 (389)
252 3nh6_A ATP-binding cassette SU 29.4 1.5E+02 0.0052 26.8 7.6 68 112-206 196-263 (306)
253 3cg0_A Response regulator rece 29.2 1E+02 0.0036 22.4 5.6 50 110-176 42-91 (140)
254 2dt8_A DEGV family protein; fa 29.2 2.9E+02 0.01 24.4 9.4 47 91-139 102-166 (280)
255 3pih_A Uvrabc system protein A 29.1 91 0.0031 33.0 6.8 71 112-206 811-882 (916)
256 1vhx_A Putative holliday junct 29.1 1.3E+02 0.0043 24.5 6.4 55 113-173 42-96 (150)
257 2ce2_X GTPase HRAS; signaling 29.0 96 0.0033 23.1 5.4 64 100-175 53-116 (166)
258 1yzf_A Lipase/acylhydrolase; s 29.0 1.8E+02 0.0061 22.4 7.2 60 110-171 87-147 (195)
259 2jli_A YSCU, YOP proteins tran 28.9 27 0.00092 28.2 2.2 48 124-171 35-88 (123)
260 1mb3_A Cell division response 28.8 66 0.0022 23.0 4.2 41 124-175 43-83 (124)
261 2z9v_A Aspartate aminotransfer 28.7 1.2E+02 0.0042 26.6 6.8 52 107-172 118-169 (392)
262 3eod_A Protein HNR; response r 28.7 1.1E+02 0.0038 22.1 5.6 41 123-176 48-88 (130)
263 2r8r_A Sensor protein; KDPD, P 28.5 1E+02 0.0034 27.2 6.0 70 126-205 84-163 (228)
264 2r48_A Phosphotransferase syst 28.1 44 0.0015 26.2 3.2 45 155-206 21-66 (106)
265 3n53_A Response regulator rece 27.8 45 0.0015 24.8 3.2 52 110-176 34-85 (140)
266 3cf2_A TER ATPase, transitiona 27.7 2.3E+02 0.008 29.4 9.5 70 110-180 282-354 (806)
267 3pih_A Uvrabc system protein A 27.7 73 0.0025 33.7 5.8 71 111-205 469-539 (916)
268 1ems_A Nitfhit, NIT-fragIle hi 27.7 1.1E+02 0.0036 28.7 6.4 59 111-173 32-95 (440)
269 3f6p_A Transcriptional regulat 27.6 93 0.0032 22.5 5.0 49 110-176 34-82 (120)
270 1iv0_A Hypothetical protein; r 27.6 90 0.0031 23.7 4.9 57 110-173 35-91 (98)
271 1f89_A 32.5 kDa protein YLR351 27.4 67 0.0023 28.0 4.8 59 111-173 29-97 (291)
272 2dqw_A Dihydropteroate synthas 27.4 98 0.0033 28.3 5.9 56 114-179 179-234 (294)
273 3bzs_A ESCU; auto cleavage pro 27.4 29 0.001 28.5 2.2 20 152-171 79-98 (137)
274 2lpm_A Two-component response 27.4 58 0.002 25.4 3.9 38 123-175 50-87 (123)
275 1vjg_A Putative lipase from th 27.3 2.3E+02 0.0078 22.8 7.8 43 127-172 130-172 (218)
276 2uxy_A Aliphatic amidase; nitr 27.1 1E+02 0.0035 28.0 6.1 62 111-174 35-102 (341)
277 3cf4_G Acetyl-COA decarboxylas 27.0 24 0.00082 29.0 1.6 55 154-208 49-118 (170)
278 1nu0_A Hypothetical protein YQ 26.7 1.4E+02 0.0049 23.9 6.3 52 116-174 43-95 (138)
279 2r4q_A Phosphotransferase syst 26.1 49 0.0017 25.9 3.2 45 155-206 21-66 (106)
280 3o94_A Nicotinamidase; hydrola 26.0 80 0.0027 27.1 4.9 49 127-175 23-73 (211)
281 3ac6_A Phosphoribosylformylgly 25.9 1.1E+02 0.0036 31.1 6.5 56 114-172 466-521 (725)
282 3b2n_A Uncharacterized protein 25.8 1.2E+02 0.0041 22.2 5.4 50 110-176 37-86 (133)
283 1aj0_A DHPS, dihydropteroate s 25.8 1.3E+02 0.0043 27.2 6.4 60 111-180 162-223 (282)
284 2jlj_A YSCU, YOP proteins tran 25.7 33 0.0011 28.4 2.2 47 125-171 45-97 (144)
285 3mfq_A TROA, high-affinity zin 25.7 1E+02 0.0035 27.4 5.7 50 109-174 196-245 (282)
286 3mil_A Isoamyl acetate-hydroly 25.4 1.8E+02 0.0061 23.5 6.8 62 110-171 94-167 (240)
287 2rb9_A HYPE protein; hydrogena 25.3 1E+02 0.0036 27.9 5.8 53 113-171 74-126 (334)
288 2ce7_A Cell division protein F 25.2 2E+02 0.0067 27.8 8.0 63 112-175 95-162 (476)
289 2dr1_A PH1308 protein, 386AA l 24.9 1.6E+02 0.0054 25.7 6.8 52 107-172 130-181 (386)
290 3kl2_A Putative isochorismatas 24.8 71 0.0024 27.5 4.3 49 127-175 26-80 (226)
291 4e7p_A Response regulator; DNA 24.3 1.4E+02 0.0049 22.3 5.6 51 110-177 54-104 (150)
292 2qxy_A Response regulator; reg 24.2 85 0.0029 23.2 4.2 49 110-176 36-84 (142)
293 2yrr_A Aminotransferase, class 24.1 1.3E+02 0.0046 25.6 6.1 51 107-172 109-159 (353)
294 2w8t_A SPT, serine palmitoyltr 24.1 1.1E+02 0.0037 27.9 5.7 52 109-172 178-229 (427)
295 3zrp_A Serine-pyruvate aminotr 24.1 84 0.0029 27.4 4.8 51 107-172 112-162 (384)
296 2dyu_A Formamidase; AMIF, CEK, 24.1 71 0.0024 29.0 4.4 64 111-175 36-104 (334)
297 3b0z_B Flagellar biosynthetic 29.8 16 0.00056 29.1 0.0 20 152-171 25-44 (114)
298 2o8b_B DNA mismatch repair pro 23.9 2E+02 0.0067 30.7 8.3 47 123-176 865-911 (1022)
299 3nra_A Aspartate aminotransfer 23.9 2.2E+02 0.0074 25.1 7.6 53 107-172 165-217 (407)
300 1lzl_A Heroin esterase; alpha/ 23.9 2E+02 0.0069 24.6 7.2 63 110-175 94-159 (323)
301 1pja_A Palmitoyl-protein thioe 23.9 2.3E+02 0.0079 23.5 7.4 61 112-176 50-111 (302)
302 4f0j_A Probable hydrolytic enz 23.8 1.8E+02 0.0061 23.7 6.6 67 110-179 58-125 (315)
303 3b60_A Lipid A export ATP-bind 23.8 3E+02 0.01 26.7 9.2 68 112-206 486-553 (582)
304 2e11_A Hydrolase; dimethylarse 23.8 28 0.00096 30.1 1.5 59 112-175 23-84 (266)
305 2rjn_A Response regulator rece 23.6 1.6E+02 0.0054 22.1 5.8 40 123-175 48-87 (154)
306 2pjz_A Hypothetical protein ST 23.6 3.5E+02 0.012 23.6 8.7 67 113-207 135-202 (263)
307 3aam_A Endonuclease IV, endoiv 23.5 3E+02 0.01 23.0 8.2 10 162-171 96-105 (270)
308 4dsu_A GTPase KRAS, isoform 2B 23.4 1.5E+02 0.0052 22.8 5.8 64 100-175 54-117 (189)
309 1zgz_A Torcad operon transcrip 23.4 1.8E+02 0.006 20.6 5.8 40 123-176 43-82 (122)
310 2yyd_A Selenide, water dikinas 23.3 1.6E+02 0.0055 26.9 6.7 50 117-171 89-138 (345)
311 3thx_B DNA mismatch repair pro 23.2 2.1E+02 0.0073 30.1 8.3 57 113-176 739-795 (918)
312 2atv_A RERG, RAS-like estrogen 23.2 2.3E+02 0.0079 22.3 7.0 64 99-175 77-140 (196)
313 3nbm_A PTS system, lactose-spe 23.1 60 0.0021 25.1 3.2 71 100-173 9-84 (108)
314 3k7b_A Protein A33; C-type lec 23.1 48 0.0016 25.7 2.5 35 237-272 13-47 (96)
315 1jji_A Carboxylesterase; alpha 23.1 2.2E+02 0.0076 24.4 7.3 63 111-176 95-160 (311)
316 3hjg_A Putative alpha-ribazole 23.0 2.4E+02 0.0082 23.3 7.3 30 146-175 120-149 (213)
317 3jte_A Response regulator rece 23.0 2E+02 0.0069 21.0 6.2 40 124-176 47-86 (143)
318 1h8u_A MBP, eosinophil granule 23.0 20 0.00069 26.6 0.3 36 245-281 4-40 (117)
319 1eye_A DHPS 1, dihydropteroate 23.0 1.2E+02 0.0042 27.3 5.7 59 111-179 154-214 (280)
320 1k68_A Phytochrome response re 23.0 1.1E+02 0.0039 22.0 4.7 42 125-177 54-95 (140)
321 2j48_A Two-component sensor ki 22.8 1.1E+02 0.0038 21.1 4.4 52 110-176 33-84 (119)
322 3eul_A Possible nitrate/nitrit 22.6 1.4E+02 0.0048 22.3 5.3 50 110-176 49-98 (152)
323 2bkw_A Alanine-glyoxylate amin 22.6 1.8E+02 0.0063 25.2 6.7 52 106-172 121-174 (385)
324 1jbe_A Chemotaxis protein CHEY 22.6 1.1E+02 0.0037 22.0 4.5 42 123-175 46-87 (128)
325 1srr_A SPO0F, sporulation resp 22.6 1.8E+02 0.0062 20.7 5.7 50 110-176 35-84 (124)
326 3nyi_A FAT acid-binding protei 22.5 2.6E+02 0.0089 25.1 7.8 46 93-139 112-175 (297)
327 3iv3_A Tagatose 1,6-diphosphat 22.4 3.9E+02 0.013 24.7 9.1 89 85-176 149-254 (332)
328 2bov_A RAla, RAS-related prote 22.3 1.8E+02 0.006 22.9 6.1 65 99-175 63-127 (206)
329 1kao_A RAP2A; GTP-binding prot 22.3 2.1E+02 0.007 21.3 6.2 64 100-175 53-116 (167)
330 3d8b_A Fidgetin-like protein 1 22.3 2.7E+02 0.0092 25.0 8.0 53 123-175 173-227 (357)
331 3m6y_A 4-hydroxy-2-oxoglutarat 22.2 1.6E+02 0.0054 26.8 6.1 75 86-166 200-274 (275)
332 3f9t_A TDC, L-tyrosine decarbo 22.2 1.9E+02 0.0065 25.1 6.7 52 107-173 156-207 (397)
333 1ohv_A 4-aminobutyrate aminotr 22.2 1.5E+02 0.005 27.9 6.3 40 126-172 258-297 (472)
334 3isl_A Purine catabolism prote 22.0 1.2E+02 0.0042 26.8 5.5 51 107-172 121-171 (416)
335 3hzh_A Chemotaxis response reg 22.0 1.2E+02 0.004 23.1 4.8 51 110-175 69-119 (157)
336 1tx2_A DHPS, dihydropteroate s 21.8 1.7E+02 0.0058 26.6 6.4 73 97-179 159-241 (297)
337 3rqi_A Response regulator prot 21.8 1.3E+02 0.0046 23.6 5.2 41 123-176 48-88 (184)
338 3kgw_A Alanine-glyoxylate amin 21.7 90 0.0031 27.3 4.5 51 107-172 133-183 (393)
339 1zzm_A Putative deoxyribonucle 21.7 2.8E+02 0.0095 23.2 7.5 28 150-179 110-137 (259)
340 2xio_A Putative deoxyribonucle 21.6 2.3E+02 0.0077 24.9 7.2 28 150-179 123-150 (301)
341 3hdv_A Response regulator; PSI 21.5 1.1E+02 0.0039 22.2 4.4 41 125-177 51-91 (136)
342 2yxz_A Thiamin-monophosphate k 21.2 1.6E+02 0.0056 26.1 6.1 51 115-171 70-120 (311)
343 3dci_A Arylesterase; SGNH_hydr 21.2 2.3E+02 0.0078 23.2 6.8 48 126-173 147-196 (232)
344 1t3i_A Probable cysteine desul 21.2 99 0.0034 27.4 4.7 48 109-172 157-204 (420)
345 2vf7_A UVRA2, excinuclease ABC 21.2 1.1E+02 0.0038 32.0 5.6 69 113-205 737-806 (842)
346 3mcq_A Thiamine-monophosphate 21.0 1.9E+02 0.0064 26.0 6.5 48 117-171 69-116 (319)
347 2gkg_A Response regulator homo 21.0 1.1E+02 0.0039 21.6 4.2 50 110-173 37-86 (127)
348 2z1u_A Hydrogenase expression/ 20.9 1.2E+02 0.004 27.6 5.2 52 114-171 75-126 (343)
349 1es9_A PAF-AH, platelet-activa 20.9 2.9E+02 0.0098 22.5 7.3 54 114-171 117-172 (232)
350 3r46_A Coiled coil helix L24D; 20.8 69 0.0024 19.8 2.4 16 152-167 4-19 (35)
351 3kax_A Aminotransferase, class 20.8 2.6E+02 0.0089 24.3 7.3 52 109-173 144-195 (383)
352 1jeo_A MJ1247, hypothetical pr 20.8 1.1E+02 0.0037 24.5 4.4 96 88-206 30-134 (180)
353 3lua_A Response regulator rece 20.7 42 0.0014 25.0 1.8 44 123-176 46-90 (140)
354 2qvg_A Two component response 20.7 1.4E+02 0.005 21.8 4.9 41 125-176 58-98 (143)
355 3e9k_A Kynureninase; kynurenin 20.6 2.1E+02 0.0071 26.2 6.9 53 107-172 197-249 (465)
356 2yci_X 5-methyltetrahydrofolat 20.6 4.5E+02 0.015 23.3 9.9 100 97-203 125-237 (271)
357 2qby_A CDC6 homolog 1, cell di 20.5 1.1E+02 0.0036 26.9 4.7 60 110-175 111-171 (386)
358 3ux8_A Excinuclease ABC, A sub 20.4 1.8E+02 0.0061 28.9 6.8 58 111-177 207-264 (670)
359 3f6c_A Positive transcription 20.4 1.9E+02 0.0066 20.7 5.5 41 124-177 44-84 (134)
360 2z1e_A Hydrogenase expression/ 20.3 1.4E+02 0.0048 26.9 5.5 52 114-171 78-129 (338)
361 3oks_A 4-aminobutyrate transam 20.1 1.5E+02 0.0052 27.4 5.9 41 125-172 226-266 (451)
No 1
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=100.00 E-value=1.2e-45 Score=351.36 Aligned_cols=206 Identities=14% Similarity=0.144 Sum_probs=179.5
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHhh
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVR 78 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (291)
.+++.+++.+|.+|++||+||+.++++.||++..+++++.... .+..+|
T Consensus 64 l~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~---------------------------- 115 (338)
T 4a1f_A 64 MNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQW---------------------------- 115 (338)
T ss_dssp HHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHH----------------------------
T ss_pred HHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHH----------------------------
Confidence 3677777889999999999999999999999999999987542 233445
Q ss_pred ccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeccccccCCCCCCccHHHHHHHHHH
Q psy4520 79 KPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVY-DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQ 157 (291)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~-gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r 157 (291)
+++..|...+.+.|+||+|+++ .++++|++++|++++++ |+++|||||||+|.... ...++++++++|++
T Consensus 116 -------~~l~~a~~~l~~~~l~I~d~~~-~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~-~~~~r~~ei~~isr 186 (338)
T 4a1f_A 116 -------ENLAKCFDHLSQKKLFFYDKSY-VRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSK-ATKERHEQIAEISR 186 (338)
T ss_dssp -------HHHHHHHHHHHHSCEEEECCTT-CCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHH-HHHHCCCCHHHHHH
T ss_pred -------HHHHHHHHHHhcCCeEEeCCCC-CcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCC-CCCChHHHHHHHHH
Confidence 6777888999999999999887 58999999999999999 89999999999987532 12467788999999
Q ss_pred HHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCcc--------------cc------
Q psy4520 158 EFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQ--------------NL------ 212 (291)
Q Consensus 158 ~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~--------------~~------ 212 (291)
.||.||||+||||++|+| +|.+| ++|+|+||||||+|||+||+|+||||+++. +.
T Consensus 187 ~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDLreSg~IeqdAD~Vl~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~ 266 (338)
T 4a1f_A 187 ELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFLYRGYIYQMRAEDNKIDKLKKEGKIEEAQ 266 (338)
T ss_dssp HHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGSEETTEECCCCSEEEEEECHHHHHHHHHHHHHHHHHGGGCHHHHH
T ss_pred HHHHHHHHcCCeEEEEEecCccccccccCCCChHhcccchhhhhhCcEEEEEecchhccccccccccccccccccccccc
Confidence 999999999999999999 78776 799999999999999999999999999742 11
Q ss_pred ------------------ccceEEEEecccCCCCccCCCCCC-ceeeeceEeEEeeC
Q psy4520 213 ------------------ELKKFLQALPIERCPQFRDQPPGS-TATYNGKCYIFYNR 250 (291)
Q Consensus 213 ------------------~~~~~l~I~KnR~~~~~R~g~~G~-~l~f~g~~~~f~~~ 250 (291)
.+.++|+|+||| |||+|+ .+.|++++++|.|.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~eiiiaK~R------~G~~g~v~l~f~~~~~~F~~~ 317 (338)
T 4a1f_A 267 ELYLKVNEERRIHKQNGSIEEAEIIVAKNR------NGATGTVYTRFNAPFTRYEDM 317 (338)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEEEEEET------TSCCEEEEEEEEGGGTEECCC
T ss_pred chhhhhhhhhcccccccCCCceEEEEEecc------CCCCceEEEEEccccceeccc
Confidence 345789999985 999999 99999999999987
No 2
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=100.00 E-value=1.9e-39 Score=317.67 Aligned_cols=211 Identities=11% Similarity=0.066 Sum_probs=180.7
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc-----ccccchhhhhccccccccccCCCCchhHHHHH
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL-----DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEL 76 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 76 (291)
.|++.+++.+|.+|++||+||++++++.||++..+++++.... ...++|
T Consensus 215 l~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~-------------------------- 268 (444)
T 3bgw_A 215 LKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDW-------------------------- 268 (444)
T ss_dssp HHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCH--------------------------
T ss_pred HHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHH--------------------------
Confidence 4778888888999999999999999999999999999876532 233456
Q ss_pred hhccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCc--EEEEeccccccCCCCCCccHHHHHHH
Q psy4520 77 VRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTG--HVIIDNVQFMLGLSDSALDRFYMQDT 154 (291)
Q Consensus 77 ~~~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~--lviIDyLqlm~~~~~~~~~r~~~~~~ 154 (291)
.++..+.+.+...|+||+|.++ .++++|+++++++++++|++ +|||||||+|.... ...++++++++
T Consensus 269 ---------~~l~~a~~~l~~~~l~i~d~~~-~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~-~~~~r~~~i~~ 337 (444)
T 3bgw_A 269 ---------GKLSMAIGEISNSNINIFDKAG-QSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAK-ANDSRTNQISQ 337 (444)
T ss_dssp ---------HHHHHHHHHHHTSCEEEECCSS-CBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSC-SSSCHHHHHHH
T ss_pred ---------HHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCC-CCCCHHHHHHH
Confidence 5677788888889999999887 69999999999999999999 99999999987543 23588899999
Q ss_pred HHHHHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCccc----cccceEEEEecccC
Q psy4520 155 IIQEFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQN----LELKKFLQALPIER 225 (291)
Q Consensus 155 i~r~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~----~~~~~~l~I~KnR~ 225 (291)
+++.||.|||++||||++++| +|+++ ++|.++||||||+|||+||+|++|||+++.+ ..+..+|+|+|||
T Consensus 338 i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~~~~~~~~~~~~~l~i~K~R- 416 (444)
T 3bgw_A 338 ISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHR- 416 (444)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCBGGGTCTTCSSTTEEEEEEEEES-
T ss_pred HHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEeccccccccccCCCeEEEEEEccc-
Confidence 999999999999999999999 88776 7899999999999999999999999997532 2345789999985
Q ss_pred CCCccCCCCCC-ceeeeceEeEEeeCCCCchh
Q psy4520 226 CPQFRDQPPGS-TATYNGKCYIFYNRRPMNLR 256 (291)
Q Consensus 226 ~~~~R~g~~G~-~l~f~g~~~~f~~~~~~~~~ 256 (291)
|||+|+ .+.|++++.+|.|.. ..|.
T Consensus 417 -----~G~~g~v~l~f~~~~~rf~~~~-~~~~ 442 (444)
T 3bgw_A 417 -----DGPVGTVSLAFIKEYGNFVNLE-RRFD 442 (444)
T ss_dssp -----SSCCEEEEEEEETTTTEEECCC-----
T ss_pred -----CCCCeEEEEEEEcCccEEecCC-cCCC
Confidence 899999 999999999999874 4443
No 3
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=100.00 E-value=6.5e-38 Score=292.75 Aligned_cols=211 Identities=11% Similarity=0.064 Sum_probs=178.4
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc-----ccccchhhhhccccccccccCCCCchhHHHHH
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL-----DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEL 76 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 76 (291)
.|++.+++.+|.+|++||+||+++++..||++..+++++.... .+..+|
T Consensus 86 l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~-------------------------- 139 (315)
T 3bh0_A 86 LKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDW-------------------------- 139 (315)
T ss_dssp HHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCH--------------------------
T ss_pred HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHH--------------------------
Confidence 3677788888999999999999999999999999998876432 123445
Q ss_pred hhccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCc--EEEEeccccccCCCCCCccHHHHHHH
Q psy4520 77 VRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTG--HVIIDNVQFMLGLSDSALDRFYMQDT 154 (291)
Q Consensus 77 ~~~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~--lviIDyLqlm~~~~~~~~~r~~~~~~ 154 (291)
+++..+...+...|+|++|.++ .++++|+++++++++++|++ +|||||||+|.... ...++++++.+
T Consensus 140 ---------~~l~~a~~~l~~~~i~i~d~~~-~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~-~~~~r~~~i~~ 208 (315)
T 3bh0_A 140 ---------GKLSMAIGEISNSNINIFDKAG-QSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAK-ANDSRTNQISQ 208 (315)
T ss_dssp ---------HHHHHHHHHHHTSCEEEECCSC-CBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCSC-TTSCHHHHHHH
T ss_pred ---------HHHHHHHHHHhCCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCCC-CCCCHHHHHHH
Confidence 5677788888889999999887 68999999999999999999 99999999987532 33578899999
Q ss_pred HHHHHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCcc----ccccceEEEEecccC
Q psy4520 155 IIQEFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQ----NLELKKFLQALPIER 225 (291)
Q Consensus 155 i~r~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~----~~~~~~~l~I~KnR~ 225 (291)
+++.||.+||++||||++++| +|+.+ ++|.++||+|||+|||+||+||+|||+++. +..+..+|+|+|||
T Consensus 209 ~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~r~~~~~~~~~~~~~~~l~v~K~R- 287 (315)
T 3bh0_A 209 ISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHR- 287 (315)
T ss_dssp HHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEEEHHHHCTTCTTTTEEEEEEEEET-
T ss_pred HHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEecccccCccccCCCcEEEEEECCc-
Confidence 999999999999999999999 77765 789999999999999999999999998742 12345789999985
Q ss_pred CCCccCCCCCC-ceeeeceEeEEeeCCCCchh
Q psy4520 226 CPQFRDQPPGS-TATYNGKCYIFYNRRPMNLR 256 (291)
Q Consensus 226 ~~~~R~g~~G~-~l~f~g~~~~f~~~~~~~~~ 256 (291)
+|++|+ .+.|++++.+|.|.. .+|.
T Consensus 288 -----~G~~g~~~l~f~~~~~~f~~~~-~~~~ 313 (315)
T 3bh0_A 288 -----DGPVGTVSLAFIKEYGNFVNLE-RRFD 313 (315)
T ss_dssp -----TSCCEEEEEEEEGGGTEEEECC-----
T ss_pred -----CCCCceEEEEEECCCCeEecCC-CCCC
Confidence 899999 999999999999874 4444
No 4
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=100.00 E-value=7.4e-37 Score=297.46 Aligned_cols=207 Identities=17% Similarity=0.159 Sum_probs=174.5
Q ss_pred cHHHHHHHH-cCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHh
Q psy4520 2 SEYSLDLAL-QGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELV 77 (291)
Q Consensus 2 ~q~al~la~-qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 77 (291)
.+++.+++. +|.+|++||+||+.+++..||+++.++++..... .+.++|
T Consensus 218 l~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~--------------------------- 270 (444)
T 2q6t_A 218 LTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRDF--------------------------- 270 (444)
T ss_dssp HHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHH---------------------------
T ss_pred HHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHH---------------------------
Confidence 366777776 5999999999999999999999999999886542 223344
Q ss_pred hccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCC--CCCCccHHHHHHHH
Q psy4520 78 RKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGL--SDSALDRFYMQDTI 155 (291)
Q Consensus 78 ~~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~--~~~~~~r~~~~~~i 155 (291)
+++..+.+.+...|+|++|.++ .++++++++++++++++|+++|||||||+|... .....+++++++++
T Consensus 271 --------~~~~~a~~~l~~~~l~i~d~~~-~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i 341 (444)
T 2q6t_A 271 --------SRLVDVASRLSEAPIYIDDTPD-LTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAI 341 (444)
T ss_dssp --------HHHHHHHHHHHTSCEEEECCTT-CBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHH
T ss_pred --------HHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHH
Confidence 5667788888889999999876 589999999999999999999999999998754 22235788999999
Q ss_pred HHHHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCccc----cccceEEEEecccCC
Q psy4520 156 IQEFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQN----LELKKFLQALPIERC 226 (291)
Q Consensus 156 ~r~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~----~~~~~~l~I~KnR~~ 226 (291)
++.||.+|+++||||++++| +|..+ ++|.++||||||+|+|+||+|++|||+++.+ ..+..+|+|+|||
T Consensus 342 ~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r~~~~~~~~~~~~~~~l~i~K~R-- 419 (444)
T 2q6t_A 342 SRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNPHSEKAGIAEIIVGKQR-- 419 (444)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEEGGGTCSSSSCCSEEEEEEEECS--
T ss_pred HHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEecccccCCcCCCCCeEEEEEEecC--
Confidence 99999999999999999999 77665 6799999999999999999999999998532 2356789999985
Q ss_pred CCccCCCCCC-ceeeeceEeEEeeC
Q psy4520 227 PQFRDQPPGS-TATYNGKCYIFYNR 250 (291)
Q Consensus 227 ~~~R~g~~G~-~l~f~g~~~~f~~~ 250 (291)
+||+|+ .+.|++++++|.|.
T Consensus 420 ----~g~~g~~~l~f~~~~~~f~~~ 440 (444)
T 2q6t_A 420 ----NGPTGTVELQFHASHVRFNDL 440 (444)
T ss_dssp ----SSCCEEEEEEEETTTTEEECC
T ss_pred ----CCCceEEEEEEECCccEEecC
Confidence 899998 88888888888875
No 5
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=100.00 E-value=2.1e-34 Score=280.85 Aligned_cols=210 Identities=14% Similarity=0.087 Sum_probs=171.1
Q ss_pred cHHHHHHHH-cCCeEEEEeccCCHHHHHHHHHHHHhcCCCcccc---ccccchhhhhccccccccccCCCCchhHHHHHh
Q psy4520 2 SEYSLDLAL-QGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELV 77 (291)
Q Consensus 2 ~q~al~la~-qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 77 (291)
.+++.+++. +|.+|++||+||+..++..|++++.++++..... ...++|
T Consensus 221 l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~--------------------------- 273 (454)
T 2r6a_A 221 LNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDW--------------------------- 273 (454)
T ss_dssp HHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHH---------------------------
T ss_pred HHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHH---------------------------
Confidence 356777775 6999999999999999999999999998876431 122333
Q ss_pred hccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHH
Q psy4520 78 RKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQ 157 (291)
Q Consensus 78 ~~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r 157 (291)
.++.++.+++...|+|+++.++ .+++++++++++++.++++++|||||||+|........++.+++.++++
T Consensus 274 --------~~~~~a~~~l~~~~l~i~d~~~-~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~ 344 (454)
T 2r6a_A 274 --------GKLTMAMGSLSNAGIYIDDTPS-IRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISR 344 (454)
T ss_dssp --------HHHHHHHHHHHSSCEEEECCTT-CCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHH
T ss_pred --------HHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHH
Confidence 5666788888889999999765 6899999999999999999999999999987533222467889999999
Q ss_pred HHHHHHHhcCceEEEEec-cCCcC----CCCccccccccccccccCccEEEEEccCccc----cccceEEEEecccCCCC
Q psy4520 158 EFRAFASRSHCHVTLVIH-PRKEN----EQLTVNSVFGSAKATQESDNVLIIQQKFNQN----LELKKFLQALPIERCPQ 228 (291)
Q Consensus 158 ~LK~~Ake~~VpVilvsh-pRk~e----k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~----~~~~~~l~I~KnR~~~~ 228 (291)
.||.+|+++||||++++| +|..+ ++|.++||||||+|+|+||+|++|||+++.+ ..+..+|+|+|||
T Consensus 345 ~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~~~~~~~~~~~~l~i~K~R---- 420 (454)
T 2r6a_A 345 SLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNKDSENKNIIEIIIAKQR---- 420 (454)
T ss_dssp HHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-------CCEEEEEEEEES----
T ss_pred HHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccccCcccCCCCeEEEEEeccc----
Confidence 999999999999999999 77766 5699999999999999999999999988531 2356789999985
Q ss_pred ccCCCCCC-ceeeeceEeEEeeCCCC
Q psy4520 229 FRDQPPGS-TATYNGKCYIFYNRRPM 253 (291)
Q Consensus 229 ~R~g~~G~-~l~f~g~~~~f~~~~~~ 253 (291)
|||+|+ .+.|++++.+|.|...+
T Consensus 421 --~G~~g~v~l~f~~~~~~f~~~~~~ 444 (454)
T 2r6a_A 421 --NGPVGTVQLAFIKEYNKFVNLERR 444 (454)
T ss_dssp --SSCCEEEEEEEETTTTEEECC---
T ss_pred --CCCCeEEEEEEEcCccEEeCCCCC
Confidence 899998 88888888888887443
No 6
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=100.00 E-value=3.1e-33 Score=275.08 Aligned_cols=208 Identities=13% Similarity=0.170 Sum_probs=164.8
Q ss_pred cHHHHHHHHc-CCeEEEEeccCCHHHHHHHHHHHHhcCCCcc---cc---ccccchhhhhccccccccccCCCCchhHHH
Q psy4520 2 SEYSLDLALQ-GVTTLWGSFEVQNKRLARIMLQQLVRKPLLD---NL---DKFDEYSDWFKTLPMYFLTFHGPQPLKLVM 74 (291)
Q Consensus 2 ~q~al~la~q-G~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 74 (291)
.|++.+++.+ |.+|++||+||++++++.||++..+++++.. .. ...++|
T Consensus 260 l~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~------------------------ 315 (503)
T 1q57_A 260 RQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKF------------------------ 315 (503)
T ss_dssp HHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHH------------------------
T ss_pred HHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHH------------------------
Confidence 3677777776 9999999999999999999999999998764 11 112222
Q ss_pred HHhhccchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHH
Q psy4520 75 ELVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDT 154 (291)
Q Consensus 75 ~~~~~~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~ 154 (291)
.++..+. +...|+||++.++..++++++++++++++++|+++|||||||+|.... ...++++++.+
T Consensus 316 -----------~~~~~~~--~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~-~~~~~~~~~~~ 381 (503)
T 1q57_A 316 -----------DQWFDEL--FGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSAS-GESDERKMIDN 381 (503)
T ss_dssp -----------HHHHHHH--HTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCC-SCCCHHHHHHH
T ss_pred -----------HHHHHHH--hccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCC-CCCCHHHHHHH
Confidence 2211122 457789999987767999999999999999999999999999986532 33588899999
Q ss_pred HHHHHHHHHHhcCceEEEEeccCCcC--------CCCccccccccccccccCccEEEEEccCccccccceEEEEecccCC
Q psy4520 155 IIQEFRAFASRSHCHVTLVIHPRKEN--------EQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERC 226 (291)
Q Consensus 155 i~r~LK~~Ake~~VpVilvshpRk~e--------k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~ 226 (291)
+++.||.||+++||||++++|.++.+ ++|+++||+|||+|+|+||+||+|+|+++.+..+..+|+|+|||
T Consensus 382 ~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~~~~~~~~~l~v~K~R-- 459 (503)
T 1q57_A 382 LMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNLVLVRILKCR-- 459 (503)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSSSSCTTEEEEEEEEET--
T ss_pred HHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCcCCCCCeEEEEEEecc--
Confidence 99999999999999999999954432 57999999999999999999999999986443456789999986
Q ss_pred CCccCCCCCC--ceeeeceEeEEeeCCC
Q psy4520 227 PQFRDQPPGS--TATYNGKCYIFYNRRP 252 (291)
Q Consensus 227 ~~~R~g~~G~--~l~f~g~~~~f~~~~~ 252 (291)
| ||++|+ .+.|++++.+|.+..+
T Consensus 460 --~-~G~~g~~~~l~f~~~~~~f~~~~~ 484 (503)
T 1q57_A 460 --F-TGDTGIAGYMEYNKETGWLEPSSY 484 (503)
T ss_dssp --T-TCCCEEEEEEEECTTTCCEEEECC
T ss_pred --C-CCCCCceEEEEEEcCCceEecCCC
Confidence 3 899986 4667777777766543
No 7
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.92 E-value=1.1e-24 Score=198.98 Aligned_cols=213 Identities=15% Similarity=0.181 Sum_probs=138.5
Q ss_pred HHHHHHHHc-CCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccc
Q psy4520 3 EYSLDLALQ-GVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPL 81 (291)
Q Consensus 3 q~al~la~q-G~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (291)
+++..++.+ |.+|++||+||+..++..|++....+.++... ... +. |..+.
T Consensus 54 ~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~----~~l------------~~-~~~~~----------- 105 (296)
T 1cr0_A 54 QQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQS----DSL------------KR-EIIEN----------- 105 (296)
T ss_dssp HHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGC----HHH------------HH-HHHHH-----------
T ss_pred HHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhc----ccc------------cc-CCCCH-----------
Confidence 455666654 88999999999999999999988877655321 000 00 00000
Q ss_pred hhhhhhHHHHHHh-hcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHH
Q psy4520 82 LDNLDKFDEYSDW-FKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFR 160 (291)
Q Consensus 82 ~~~~~~~~~a~~~-~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK 160 (291)
+.+.++.++ +...++++.+.++..++.+++.+++.++..++.++|||||++.+.... ...++...+.++++.||
T Consensus 106 ----~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~-~~~d~~~~~~~i~~~L~ 180 (296)
T 1cr0_A 106 ----GKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSAS-GESDERKMIDNLMTKLK 180 (296)
T ss_dssp ----THHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC------------CHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCC-CCCCHHHHHHHHHHHHH
Confidence 111122233 345689999876657899999999877788999999999999876432 11345577889999999
Q ss_pred HHHHhcCceEEEEecc-CCc-------CCCCccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCC
Q psy4520 161 AFASRSHCHVTLVIHP-RKE-------NEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQ 232 (291)
Q Consensus 161 ~~Ake~~VpVilvshp-Rk~-------ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g 232 (291)
.+|+++||+|++++|. |.. .++|.++|++|||.|+|.||.|++|+|....+.....+|+|+||| + ||
T Consensus 181 ~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~~~~~~~~~l~i~K~R----~-~g 255 (296)
T 1cr0_A 181 GFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNLVLVRILKCR----F-TG 255 (296)
T ss_dssp HHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-------CEEEEEEEET----T-TC
T ss_pred HHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcccCCCCeEEEEEEccc----c-CC
Confidence 9999999999999994 323 389999999999999999999999999876434456789999985 2 79
Q ss_pred CCCC--ceeeeceEeEEeeCCCC
Q psy4520 233 PPGS--TATYNGKCYIFYNRRPM 253 (291)
Q Consensus 233 ~~G~--~l~f~g~~~~f~~~~~~ 253 (291)
++|. .+.|++....|.+..+.
T Consensus 256 ~~g~~~~~~f~~~~~~f~~~~~~ 278 (296)
T 1cr0_A 256 DTGIAGYMEYNKETGWLEPSSYS 278 (296)
T ss_dssp CCEEEEEEEECTTTCCEEECCC-
T ss_pred CCCceEEEEEEcCccEEecCCCC
Confidence 9986 56777777777766443
No 8
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.82 E-value=6.1e-20 Score=160.55 Aligned_cols=179 Identities=7% Similarity=0.023 Sum_probs=118.9
Q ss_pred HHHHHHH-HcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcc--ccccccchhhhhccccccccccCCCCchhHHHHHhhc
Q psy4520 3 EYSLDLA-LQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLD--NLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRK 79 (291)
Q Consensus 3 q~al~la-~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 79 (291)
|++.+.+ .+|.+|++||+||+++++.+|+.+.....+... ......+|
T Consensus 49 ~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----------------------------- 99 (251)
T 2zts_A 49 QFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDG----------------------------- 99 (251)
T ss_dssp HHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------------------------------
T ss_pred HHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhh-----------------------------
Confidence 4555644 458999999999999999999876433321110 01111111
Q ss_pred cchhhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHH
Q psy4520 80 PLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEF 159 (291)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~L 159 (291)
+.... ... ........+..+.+++++.+++++..++++++|||+++.+.... ++...+.++++.|
T Consensus 100 --------~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~----~~~~~~~~~~~~L 164 (251)
T 2zts_A 100 --------VSSVV-GLP--SEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL----EEERKIREVLLKL 164 (251)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS----SSGGGHHHHHHHH
T ss_pred --------HHHHh-hcc--cchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhc----cChHHHHHHHHHH
Confidence 00000 000 01111222335789999999999999999999999998765322 2234567899999
Q ss_pred HHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 160 RAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 160 K~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
+.+|+++||||++++|.. +|..+++++||.+++.||.|++|++++..+ .....+.|.|+| ++|.+.
T Consensus 165 ~~~a~~~~i~vi~~~q~~----~~~~~~~~~~~~~~~~aD~vi~l~~~~~~~-~~~R~l~I~K~R------~~~~~~ 230 (251)
T 2zts_A 165 NTILLEMGVTTILTTEAP----DPQHGKLSRYGIEEFIARGVIVLDLQEKNI-ELKRYVLIRKMR------ETRHSM 230 (251)
T ss_dssp HHHHHHHCCEEEEEECCC--------CCSSSSSCGGGGCSEEEEEEEEECSS-SEEEEEEEEEET------TCCCCC
T ss_pred HHHHHHcCCCeEEEEEEe----cccccccccCCceeEEeeEEEEEEEEecCC-eEEEEEEEEEcC------CCCCCC
Confidence 999999999999999953 467889999999999999999999976532 234569999986 566654
No 9
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.67 E-value=4e-16 Score=172.66 Aligned_cols=166 Identities=8% Similarity=-0.015 Sum_probs=124.0
Q ss_pred HHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccch
Q psy4520 3 EYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLL 82 (291)
Q Consensus 3 q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 82 (291)
+++.+++.+|.+|++||+||+..++. +...|++..
T Consensus 751 ~lA~~aa~~g~~VlyiS~Ees~~ql~----A~~lGvd~~----------------------------------------- 785 (1706)
T 3cmw_A 751 QVIAAAQREGKTCAFIDAEHALDPIY----ARKLGVDID----------------------------------------- 785 (1706)
T ss_dssp HHHHHHHHTTCCEEEECTTSCCCHHH----HHHTTCCGG-----------------------------------------
T ss_pred HHHHHHHHcCCCeEEEeccchHHHHH----HHHcCCChh-----------------------------------------
Confidence 56677778899999999999999874 444443321
Q ss_pred hhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCC----CCCCc----cHHHHHHH
Q psy4520 83 DNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGL----SDSAL----DRFYMQDT 154 (291)
Q Consensus 83 ~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~----~~~~~----~r~~~~~~ 154 (291)
+ |++.+. .+++++++.++++++.+++++|||||||.|... +..++ .+.+++++
T Consensus 786 -----------~-----L~i~~~---~~leei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~ 846 (1706)
T 3cmw_A 786 -----------N-----LLCSQP---DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 846 (1706)
T ss_dssp -----------G-----CEEECC---SSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHH
T ss_pred -----------h-----eEEecC---CcHHHHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHH
Confidence 1 455553 368999999999999999999999999998631 11111 24567889
Q ss_pred HHHHHHHHHHhcCceEEEEec-cCCcCC---CCccccccccccccccCccEEEEEccCcc-c---c-ccceEEEEecccC
Q psy4520 155 IIQEFRAFASRSHCHVTLVIH-PRKENE---QLTVNSVFGSAKATQESDNVLIIQQKFNQ-N---L-ELKKFLQALPIER 225 (291)
Q Consensus 155 i~r~LK~~Ake~~VpVilvsh-pRk~ek---~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~-~---~-~~~~~l~I~KnR~ 225 (291)
++++|+.+|+++||||++++| +|+.+. .|. .-.||+.|+|+||+|++|+|+++. + . ....+|+|+|||
T Consensus 847 ~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~--~p~gs~~Leq~ADvvl~L~R~~~~~~g~~~~g~~r~l~V~KnR- 923 (1706)
T 3cmw_A 847 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPE--TTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNK- 923 (1706)
T ss_dssp HHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCE--EESSCSHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEES-
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCccccccCCcc--ccCCcchhhheeeEEEEEEecccccccccccCcEEEEEEEecC-
Confidence 999999999999999999999 666552 332 223699999999999999998731 1 1 125779999986
Q ss_pred CCCccCCCCCCceee
Q psy4520 226 CPQFRDQPPGSTATY 240 (291)
Q Consensus 226 ~~~~R~g~~G~~l~f 240 (291)
+||+|....|
T Consensus 924 -----~gp~~~~~~F 933 (1706)
T 3cmw_A 924 -----IAAPFKQAEF 933 (1706)
T ss_dssp -----SSCSCCEEEE
T ss_pred -----CCCCCceEEE
Confidence 7999875333
No 10
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.59 E-value=2.1e-14 Score=137.47 Aligned_cols=120 Identities=9% Similarity=0.006 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCC----Cc----cHHHHHHHHHHHHHHHHHhcCceEEEEec-cCCcC
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDS----AL----DRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRKEN 180 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~----~~----~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk~e 180 (291)
+.+++++.++.+++.+++++||||+++.+....+. ++ .+...+.++++.|+.+|+++||+|+++.| +++.+
T Consensus 136 ~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~ 215 (366)
T 1xp8_A 136 NGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIG 215 (366)
T ss_dssp SHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-----
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccC
Confidence 67889999999888899999999999988642211 11 23356788999999999999999999999 56554
Q ss_pred C---CCccccccccccccccCccEEEEEccCc--ccc----ccceEEEEecccCCCCccCCCCCCc
Q psy4520 181 E---QLTVNSVFGSAKATQESDNVLIIQQKFN--QNL----ELKKFLQALPIERCPQFRDQPPGST 237 (291)
Q Consensus 181 k---~p~lsDLrgSg~IeQdAD~Vi~L~R~~~--~~~----~~~~~l~I~KnR~~~~~R~g~~G~~ 237 (291)
. .|. --.|+++|++.||.+++|+|... .+. .....++|.||| ++|++..
T Consensus 216 ~~fg~p~--~~~gg~al~~~a~~rl~L~r~~~~~k~~~~~~g~~~~v~v~Knr------~~p~~~~ 273 (366)
T 1xp8_A 216 VMYGNPE--TTTGGRALKFYASVRLDVRKIGQPTKVGNDAVANTVKIKTVKNK------VAAPFKE 273 (366)
T ss_dssp ------------CHHHHHHHCSEEEEEEEESCCC------CEEEEEEEEEEES------SSCCCCE
T ss_pred cccCCcc--ccCCcchhhheeeEEEEEEecchhcccCccccCCEEEEEEEcCC------CCCCCce
Confidence 2 121 12468899999999999999873 211 135679999986 6777553
No 11
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.58 E-value=1e-14 Score=163.25 Aligned_cols=168 Identities=8% Similarity=-0.023 Sum_probs=121.6
Q ss_pred HHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccch
Q psy4520 3 EYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLL 82 (291)
Q Consensus 3 q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 82 (291)
|++.+++.+|.+|++||+||+..++. ++..|++..
T Consensus 402 qia~~~a~~G~~vlyis~E~s~~~~~----a~~lGvd~~----------------------------------------- 436 (2050)
T 3cmu_A 402 QVIAAAQREGKTCAFIDAEHALDPIY----ARKLGVDID----------------------------------------- 436 (2050)
T ss_dssp HHHHHHHTTTCCEEEECTTSCCCHHH----HHHTTCCTT-----------------------------------------
T ss_pred HHHHHHHhcCCeEEEEEcCCCHHHHH----HHHcCCCHH-----------------------------------------
Confidence 55666667899999999999998874 333444321
Q ss_pred hhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCC----CCCc----cHHHHHHH
Q psy4520 83 DNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLS----DSAL----DRFYMQDT 154 (291)
Q Consensus 83 ~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~----~~~~----~r~~~~~~ 154 (291)
.++|.+. .+++++++.++++++.+++++|||||+|.+.... ..++ ....+++.
T Consensus 437 ----------------~L~I~~~---~~~e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~ 497 (2050)
T 3cmu_A 437 ----------------NLLCSQP---DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 497 (2050)
T ss_dssp ----------------TCEEECC---SSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHH
T ss_pred ----------------HeEEeCC---CCHHHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHH
Confidence 1455553 3689999999999999999999999999886311 1111 23456788
Q ss_pred HHHHHHHHHHhcCceEEEEec-cCCcCCC-CccccccccccccccCccEEEEEccCc-ccc----ccceEEEEecccCCC
Q psy4520 155 IIQEFRAFASRSHCHVTLVIH-PRKENEQ-LTVNSVFGSAKATQESDNVLIIQQKFN-QNL----ELKKFLQALPIERCP 227 (291)
Q Consensus 155 i~r~LK~~Ake~~VpVilvsh-pRk~ek~-p~lsDLrgSg~IeQdAD~Vi~L~R~~~-~~~----~~~~~l~I~KnR~~~ 227 (291)
+++.|+.+|+++||||++++| +|+++.+ ..-..-.|+++|+|+||+|++|+|+.+ .+. ....+++|.|||
T Consensus 498 ~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~~~~g~~~~g~~~~v~V~KnR--- 574 (2050)
T 3cmu_A 498 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNK--- 574 (2050)
T ss_dssp HHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEES---
T ss_pred HHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEecccccCCccccCcEEEEEEEecC---
Confidence 899999999999999999999 6665522 000122578899999999999999874 111 134679999986
Q ss_pred CccCCCCCCceee
Q psy4520 228 QFRDQPPGSTATY 240 (291)
Q Consensus 228 ~~R~g~~G~~l~f 240 (291)
+||+|+...|
T Consensus 575 ---~gp~g~~~~f 584 (2050)
T 3cmu_A 575 ---IAAPFKQAEF 584 (2050)
T ss_dssp ---SSCSCCEEEE
T ss_pred ---CCCCCceEEE
Confidence 7999875333
No 12
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.58 E-value=1.2e-14 Score=126.68 Aligned_cols=178 Identities=12% Similarity=0.126 Sum_probs=116.2
Q ss_pred HHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccch
Q psy4520 3 EYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLL 82 (291)
Q Consensus 3 q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 82 (291)
+++.+++.+|.+|+++|+|++..++.+|+. ..|.+++..... .. +++.....
T Consensus 42 ~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~--~~g~~~~~~~~~-~~---------l~~~~~~~---------------- 93 (247)
T 2dr3_A 42 QFLWNGLKMGEPGIYVALEEHPVQVRQNMA--QFGWDVKPYEEK-GM---------FAMVDAFT---------------- 93 (247)
T ss_dssp HHHHHHHHTTCCEEEEESSSCHHHHHHHHH--TTTCCCHHHHHH-TS---------EEEEECST----------------
T ss_pred HHHHHHHhcCCeEEEEEccCCHHHHHHHHH--HcCCCHHHHhhC-Cc---------EEEEecch----------------
Confidence 566777788999999999999999988875 345444321100 00 00000000
Q ss_pred hhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHH
Q psy4520 83 DNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAF 162 (291)
Q Consensus 83 ~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~ 162 (291)
. ..+.+...++|+.+.+ .+++++.+.++.+..++++++||||+++.+.. .+ . ..+.+++..|+++
T Consensus 94 ---~----~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~-~~---~--~~~~~~l~~l~~~ 158 (247)
T 2dr3_A 94 ---A----GIGKSKEYEKYIVHDL--TDIREFIEVLRQAIRDINAKRVVVDSVTTLYI-NK---P--AMARSIILQLKRV 158 (247)
T ss_dssp ---T----TTCC--CCCSCBCSCC--SSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT-TC---G--GGHHHHHHHHHHH
T ss_pred ---h----hcccccccccccccCc--cCHHHHHHHHHHHHHHhCCCEEEECCchHhhc-CC---H--HHHHHHHHHHHHH
Confidence 0 0011122345555543 46888899999888889999999999997763 11 1 1234678899999
Q ss_pred HHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 163 ASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 163 Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
|++.||+|++++|..+..+ +..++ .+++.||.|++|+++... .....++.|.|+| +++.+.
T Consensus 159 ~~~~~~~vi~~~h~~~~~~-----~~~~~-~~~~~~D~vi~L~~~~~~-~~~~r~l~v~K~R------~~~~~~ 219 (247)
T 2dr3_A 159 LAGTGCTSIFVSQVSVGER-----GFGGP-GVEHGVDGIIRLDLDEID-GELKRSLIVWKMR------GTSHSM 219 (247)
T ss_dssp HHHTTCEEEEEEECC---------CCC-C-CHHHHSSEEEEEEEEEET-TEEEEEEEEEEET------TSCCCC
T ss_pred HHHCCCeEEEEecCCCCcc-----ccccc-ccceeEEEEEEEEEEccC-CeeEEEEEEEECC------CCCCCC
Confidence 9999999999999555421 12334 489999999999997642 2335679999986 677764
No 13
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=99.56 E-value=3.5e-14 Score=133.77 Aligned_cols=127 Identities=8% Similarity=0.063 Sum_probs=84.4
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHh--CCCcEEEEeccccccCCCCC--C--ccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMYV--YDTGHVIIDNVQFMLGLSDS--A--LDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~~--~gv~lviIDyLqlm~~~~~~--~--~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
+++.+....-...+++..++.++.+ +++++||||+++.+....-. + .++.+.+.++++.|+.+|+++||+|+++
T Consensus 191 l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~ 270 (343)
T 1v5w_A 191 VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVT 270 (343)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred eeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 5665544333455677777777777 78999999999987532100 1 2345678999999999999999999999
Q ss_pred ec-cCCcCCCCcc--ccccccc--cccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 174 IH-PRKENEQLTV--NSVFGSA--KATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 174 sh-pRk~ek~p~l--sDLrgSg--~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
.| .++.+.+++. ++++.+| .|++.||++++|+|... ....+.|.|+| ++|.|.
T Consensus 271 nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r~~~----~~r~~~v~K~r------~~p~~~ 328 (343)
T 1v5w_A 271 NQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRG----ELRIAKIYDSP------EMPENE 328 (343)
T ss_dssp ECC-------------------CCTTTTSSSEEEEEEESST----TEEEEEEEECT------TCCSSC
T ss_pred eeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEEcCC----CEEEEEEEECC------CCCCee
Confidence 99 5555555444 4666555 79999999999998753 24579999986 677765
No 14
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.55 E-value=5.2e-14 Score=155.97 Aligned_cols=169 Identities=8% Similarity=-0.003 Sum_probs=122.8
Q ss_pred HHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccch
Q psy4520 3 EYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLL 82 (291)
Q Consensus 3 q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 82 (291)
|++.+++.+|.+|++||+||+..++. +...|+++..
T Consensus 402 q~a~~~~~~G~~vlyis~E~s~~~~~----a~~lGvd~~~---------------------------------------- 437 (1706)
T 3cmw_A 402 QVIAAAQREGKTCAFIDAEHALDPIY----ARKLGVDIDN---------------------------------------- 437 (1706)
T ss_dssp HHHHHHHHTTCCEEEECTTSCCCHHH----HHHTTCCGGG----------------------------------------
T ss_pred HHHHHHHHhCCCeEEEEccCchHHHH----HHHcCCCHHH----------------------------------------
Confidence 56667777899999999999998863 3334443311
Q ss_pred hhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCC----CCC----ccHHHHHHH
Q psy4520 83 DNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLS----DSA----LDRFYMQDT 154 (291)
Q Consensus 83 ~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~----~~~----~~r~~~~~~ 154 (291)
+++.+. .+.+++++.++.+++.+++++|||||+|.+.... ..+ ..+..+++.
T Consensus 438 -----------------L~i~~~---~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~ 497 (1706)
T 3cmw_A 438 -----------------LLCSQP---DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 497 (1706)
T ss_dssp -----------------CEEECC---SSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHH
T ss_pred -----------------eEEcCC---CCHHHHHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHH
Confidence 233332 2578899999999999999999999999886410 011 134567889
Q ss_pred HHHHHHHHHHhcCceEEEEec-cCCcCCCC-ccccccccccccccCccEEEEEccCc-ccc----ccceEEEEecccCCC
Q psy4520 155 IIQEFRAFASRSHCHVTLVIH-PRKENEQL-TVNSVFGSAKATQESDNVLIIQQKFN-QNL----ELKKFLQALPIERCP 227 (291)
Q Consensus 155 i~r~LK~~Ake~~VpVilvsh-pRk~ek~p-~lsDLrgSg~IeQdAD~Vi~L~R~~~-~~~----~~~~~l~I~KnR~~~ 227 (291)
++++|+.+|+++||||++++| +|+++.+- .-.--.|+++|+++||.|++|+|+++ .+. ....+++|.|||
T Consensus 498 ~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~~g~~~~~~~~~l~V~KnR--- 574 (1706)
T 3cmw_A 498 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNK--- 574 (1706)
T ss_dssp HHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEES---
T ss_pred HHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccccccCccccCcEEEEEEEecC---
Confidence 999999999999999999999 66655220 00112378999999999999999864 111 235679999986
Q ss_pred CccCCCCCCceeee
Q psy4520 228 QFRDQPPGSTATYN 241 (291)
Q Consensus 228 ~~R~g~~G~~l~f~ 241 (291)
+||+|+...|.
T Consensus 575 ---~gp~~~~~~F~ 585 (1706)
T 3cmw_A 575 ---IAAPFKQAEFQ 585 (1706)
T ss_dssp ---SSCSCCEEEEE
T ss_pred ---CCCCCCeEEEE
Confidence 79998865555
No 15
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.50 E-value=4.6e-13 Score=114.97 Aligned_cols=126 Identities=8% Similarity=0.055 Sum_probs=90.1
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec-cCC
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRK 178 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk 178 (291)
+++.+..+......+++.++.+..+ +.++||||+++.+........++..++.++++.|+.+|++++++|++++| ++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~ 158 (220)
T 2cvh_A 80 FILFTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFD 158 (220)
T ss_dssp EEEECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred EEEEecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEc
Confidence 5666655433445566777766555 89999999998765322112355678889999999999999999999999 444
Q ss_pred cCCCCccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCCc
Q psy4520 179 ENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGST 237 (291)
Q Consensus 179 ~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~~ 237 (291)
.+.. .....+|..|++.||.|++|++... ....++.|.|+| ++++|..
T Consensus 159 ~~~~--~~~p~~~~~~~~~~d~vi~l~~~~~---~~~r~l~v~K~r------~~~~~~~ 206 (220)
T 2cvh_A 159 SRTE--MTKPVAEQTLGYRCKDILRLDKLPK---PGLRVAVLERHR------FRPEGLM 206 (220)
T ss_dssp CTTS--SCCSCCCHHHHHTSSEEEEEEECSS---TTEEEEEEEECS------SSCTTCE
T ss_pred CCCC--ccccCCCcceeecCcEEEEEEEecC---CCEEEEEEEeCC------CCCCCce
Confidence 4321 1223456689999999999999863 244679999986 6777753
No 16
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=99.50 E-value=6.8e-14 Score=129.46 Aligned_cols=127 Identities=11% Similarity=0.106 Sum_probs=88.1
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHh-CCCcEEEEeccccccCCC--CCC--ccHHHHHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMYV-YDTGHVIIDNVQFMLGLS--DSA--LDRFYMQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~~-~gv~lviIDyLqlm~~~~--~~~--~~r~~~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
+++.+..+.....+++..++.+.++ +++++||||+++.+.... ..+ .++.+.+.++++.|+.+|+++||+|+++.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~n 256 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTN 256 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 6666643321223466777777777 789999999999775311 001 24556789999999999999999999999
Q ss_pred c-cCCcCCC-CccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 175 H-PRKENEQ-LTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 175 h-pRk~ek~-p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
| +++.+.+ .......|+..|++.||.+++|+|++. ....+.|.|+| ++|+|.
T Consensus 257 q~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~~~----~~r~~~v~k~~------~~p~~~ 310 (322)
T 2i1q_A 257 QVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKGKG----DKRVAKLYDSP------HLPDAE 310 (322)
T ss_dssp CEECC-------CCEESSHHHHHHHCSEEEEEEECST----TEEEEEEEECS------SSCCEE
T ss_pred ceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEecCC----CeEEEEEEECC------CCCCeE
Confidence 9 4554421 111235566789999999999999763 23478999986 677764
No 17
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=99.48 E-value=2.1e-13 Score=127.04 Aligned_cols=127 Identities=7% Similarity=0.107 Sum_probs=76.9
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHh-CCCcEEEEeccccccCCC----CCCccHHHHHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMYV-YDTGHVIIDNVQFMLGLS----DSALDRFYMQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~~-~gv~lviIDyLqlm~~~~----~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
+++.+..+.-...++++.++.+.++ +++++||||+++.+.... ....++.+.+.++++.|+.+|+++||+|+++.
T Consensus 176 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 176 IYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 5665543211223466777777777 889999999999775311 01124456789999999999999999999999
Q ss_pred cc-CCcCCC-CccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 175 HP-RKENEQ-LTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 175 hp-Rk~ek~-p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
|. ++.+.+ +......|+..|++.||++++|+|+.. ....+.|.|+| ++|+|.
T Consensus 256 q~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r~~~----~~r~~~v~k~~------~~p~~~ 309 (324)
T 2z43_A 256 QVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKKSRG----NRRIARVVDAP------HLPEGE 309 (324)
T ss_dssp EC------------------------CEEEEEEECST----TEEEEEEEECS------SSCCEE
T ss_pred ceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEEcCC----CeEEEEEEECC------CCCceE
Confidence 94 444321 111234456689999999999999753 23579999986 677764
No 18
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.47 E-value=1e-12 Score=125.27 Aligned_cols=119 Identities=8% Similarity=-0.017 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCC----CCc----cHHHHHHHHHHHHHHHHHhcCceEEEEec-cCCcC
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSD----SAL----DRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRKEN 180 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~----~~~----~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk~e 180 (291)
+.+++++.++.+++.+++++||||+++.+....+ .++ .....+.+++++|+.+|+++||+|+++.| .++.+
T Consensus 125 ~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~ 204 (356)
T 1u94_A 125 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 204 (356)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC------
T ss_pred CHHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccC
Confidence 5788888898888889999999999998763110 011 12245688999999999999999999999 55544
Q ss_pred C---CCccccccccccccccCccEEEEEccCc-ccc----ccceEEEEecccCCCCccCCCCCC
Q psy4520 181 E---QLTVNSVFGSAKATQESDNVLIIQQKFN-QNL----ELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 181 k---~p~lsDLrgSg~IeQdAD~Vi~L~R~~~-~~~----~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
. .|.. -.|..+|++.||.+++|+|.++ .+. .+...++|.||| ++|++.
T Consensus 205 ~~fg~~~~--~~gG~~l~~~advrl~l~r~~~~k~g~~~~g~~~~~~i~K~r------~~p~~~ 260 (356)
T 1u94_A 205 VMFGNPET--TTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNK------IAAPFK 260 (356)
T ss_dssp ----------CTTCSHHHHHCSEEEEEEEEEEEESSSSEEEEEEEEEEEEES------SBCSCC
T ss_pred cccCCCcc--cCCCcceeeeccEEEEEEEeeeeccCccccCcEEEEEECCCc------cCCCCC
Confidence 2 1211 1233479999999999999863 111 245679999986 677543
No 19
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.29 E-value=5.1e-10 Score=101.22 Aligned_cols=110 Identities=10% Similarity=0.054 Sum_probs=68.4
Q ss_pred HHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC----CCCcccccccc
Q psy4520 116 EAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN----EQLTVNSVFGS 191 (291)
Q Consensus 116 ~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e----k~p~lsDLrgS 191 (291)
..++.++ .+.++||||+++.+.+.. .+....+..+++.|+.+|++.||+|++++|.++.. ..+.++|.+||
T Consensus 125 ~~i~~l~--~~~~livlDe~~~~~~~d---~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~~~g~~~~~~~~~g~ 199 (279)
T 1nlf_A 125 DGLKRAA--EGRRLMVLDTLRRFHIEE---ENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGS 199 (279)
T ss_dssp HHHHHHH--TTCSEEEEECGGGGCCSC---TTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-------------------
T ss_pred HHHHHhc--CCCCEEEECCHHHhcCCC---cCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccCCchhhhhccch
Confidence 3444443 368999999998765432 23345678899999999999999999999966553 36778999999
Q ss_pred ccccccCccEEEEEccCcc--------cc--ccceEEEEecccCCCCccCCCCCC
Q psy4520 192 AKATQESDNVLIIQQKFNQ--------NL--ELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R~~~~--------~~--~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
++++..+..+..+.+.... +. ...+.++|.||| +||+|.
T Consensus 200 ~~l~d~v~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~v~K~~------~~~~~~ 248 (279)
T 1nlf_A 200 SVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGVSKAN------YGAPFA 248 (279)
T ss_dssp -CTGGGCSCEEEEEECCHHHHHHTTCCTTSGGGEEEEEEEECS------SSSCCC
T ss_pred hhhccchhhhhhccCCCHHHHHHhCCChhhcCcEEEeeecccc------CCCCCC
Confidence 9998777776666665421 11 123558999986 699987
No 20
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.25 E-value=1.1e-10 Score=101.62 Aligned_cols=107 Identities=9% Similarity=0.061 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCC----ccHHHHHHHHHHHHHHHHHhcCceEEEEeccC-CcCCCCcc--c
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSA----LDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR-KENEQLTV--N 186 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~----~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR-k~ek~p~l--s 186 (291)
+++.+..+...++.++||||+++.+....-.+ ..+...+.++++.|+.+|+++|++|++++|.. ..+.+|.. +
T Consensus 107 ~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~ 186 (243)
T 1n0w_A 107 LLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAAD 186 (243)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC---------------
T ss_pred HHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCC
Confidence 34445556667899999999998765432111 12334578899999999999999999999944 44443322 3
Q ss_pred cc--cccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 187 SV--FGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 187 DL--rgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
+. .|+..|++.||.|++|++... ....+.|.|+|
T Consensus 187 ~~~~~g~~~~~~~~d~vi~l~~~~~----~~r~l~v~K~r 222 (243)
T 1n0w_A 187 PKKPIGGNIIAHASTTRLYLRKGRG----ETRICKIYDSP 222 (243)
T ss_dssp ----------CCTTCEEEEEEECST----TEEEEEECCBT
T ss_pred cccCCccChhhhcCcEEEEEEEcCC----CeEEEEEEECC
Confidence 33 455579999999999998542 23479999986
No 21
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.24 E-value=3.3e-10 Score=97.15 Aligned_cols=165 Identities=10% Similarity=0.066 Sum_probs=103.7
Q ss_pred HHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccch
Q psy4520 3 EYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLL 82 (291)
Q Consensus 3 q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 82 (291)
+++..++.+|.+|++++.|++..++..++. ..+......... .+ .+....
T Consensus 42 ~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~---------~~~~~~----------------- 91 (235)
T 2w0m_A 42 HFIAKGLRDGDPCIYVTTEESRDSIIRQAK--QFNWDFEEYIEK--KL---------IIIDAL----------------- 91 (235)
T ss_dssp HHHHHHHHHTCCEEEEESSSCHHHHHHHHH--HTTCCCGGGBTT--TE---------EEEECC-----------------
T ss_pred HHHHHHHHCCCeEEEEEcccCHHHHHHHHH--HhcchHHHHhhC--CE---------EEEecc-----------------
Confidence 344455567889999999999998887765 234333322110 11 000000
Q ss_pred hhhhhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCc--EEEEeccccccCCCCCCccHHHHHHHHHHHHH
Q psy4520 83 DNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTG--HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFR 160 (291)
Q Consensus 83 ~~~~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~--lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK 160 (291)
. ..+. +.|+.+. .+..++...+..+...++.+ +||||+++.+.... . ..+.++++.|+
T Consensus 92 ---~------~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d----~--~~~~~~~~~l~ 151 (235)
T 2w0m_A 92 ---M------KEKE--DQWSLVN---LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK----P--AMARKISYYLK 151 (235)
T ss_dssp ---C------------CTTBCSS---CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC----G--GGHHHHHHHHH
T ss_pred ---c------cccC--ceeeecC---CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC----H--HHHHHHHHHHH
Confidence 0 0000 2233232 26788888888777888999 99999998654321 1 23577999999
Q ss_pred HHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 161 AFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 161 ~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
.+|++.|++|++++|..+.+.+. +. ..+++.||.|++++++... .....++.|.|+|
T Consensus 152 ~~~~~~~~~vi~~~h~~~~~~~~----~~--~~~~~~~d~vi~l~~~~~~-~~~~r~l~v~K~r 208 (235)
T 2w0m_A 152 RVLNKWNFTIYATSQYAITTSQA----FG--FGVEHVADGIIRFRRMIRN-GELHRYILIEKMR 208 (235)
T ss_dssp HHHHHTTEEEEEEEC-----------------CHHHHCSEEEEEEEEEET-TEEEEEEEEEEET
T ss_pred HHHHhCCCeEEEEeccCcccccc----cc--cchheeeeEEEEEEEEecC-CcEEEEEEEEecc
Confidence 99999999999999955333211 11 4689999999999997642 2234679999986
No 22
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.22 E-value=3.5e-10 Score=107.21 Aligned_cols=113 Identities=7% Similarity=0.006 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCC----CCCc----cHHHHHHHHHHHHHHHHHhcCceEEEEecc-CCcC
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLS----DSAL----DRFYMQDTIIQEFRAFASRSHCHVTLVIHP-RKEN 180 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~----~~~~----~r~~~~~~i~r~LK~~Ake~~VpVilvshp-Rk~e 180 (291)
+.+++++.++.+++.+++++||||+++.+.... ..++ .......+++++|+.+|+++||+|++++|. ++.+
T Consensus 123 ~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~ 202 (349)
T 2zr9_A 123 TGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIG 202 (349)
T ss_dssp SHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC----
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccC
Confidence 578888888888888899999999998876211 0011 122356889999999999999999999994 4443
Q ss_pred C---CCccccccccccccccCccEEEEEccCc-ccc----ccceEEEEeccc
Q psy4520 181 E---QLTVNSVFGSAKATQESDNVLIIQQKFN-QNL----ELKKFLQALPIE 224 (291)
Q Consensus 181 k---~p~lsDLrgSg~IeQdAD~Vi~L~R~~~-~~~----~~~~~l~I~KnR 224 (291)
. .|. --.|+.++++.||.++.|+|.+. .+. .+...+.|.|||
T Consensus 203 ~~~~~p~--~~~gg~~l~~~ad~~l~lrr~~~~k~g~~~~g~~~~~~i~K~~ 252 (349)
T 2zr9_A 203 VMFGSPE--TTTGGKALKFYASVRLDVRRIETLKDGTDAVGNRTRVKVVKNK 252 (349)
T ss_dssp ---------CCSSHHHHHHHCSEEEEEEEEEEECSSSSCCEEEEEEEEEEES
T ss_pred cccCCCc--ccCCchHhhhccceEEEEEEeeeeecCccccCCEEEEEeCCCc
Confidence 1 221 12357889999999999999753 111 235679999986
No 23
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.13 E-value=3e-10 Score=127.64 Aligned_cols=106 Identities=9% Similarity=0.009 Sum_probs=82.0
Q ss_pred CeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccC-CC--CCCccH-----HHHHHHHHHHHHHHHHhcCceE
Q psy4520 99 PMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLG-LS--DSALDR-----FYMQDTIIQEFRAFASRSHCHV 170 (291)
Q Consensus 99 pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~-~~--~~~~~r-----~~~~~~i~r~LK~~Ake~~VpV 170 (291)
++|+.+. .++++++++++.+++++++++|||||||.|.. .. ....++ ..+++++++.||.+||++||||
T Consensus 786 ~l~i~~~---~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~V 862 (2050)
T 3cmu_A 786 NLLCSQP---DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 862 (2050)
T ss_dssp TCEEECC---SSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred ceEEecC---CCHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 4777643 58999999999999999999999999999864 10 010122 2368999999999999999999
Q ss_pred EEEec-cCCcCC-CCccccccccccccccCccEEEEEcc
Q psy4520 171 TLVIH-PRKENE-QLTVNSVFGSAKATQESDNVLIIQQK 207 (291)
Q Consensus 171 ilvsh-pRk~ek-~p~lsDLrgSg~IeQdAD~Vi~L~R~ 207 (291)
++++| +|+++. .+...--.|+..|..-|+..+.|.|.
T Consensus 863 I~l~Qv~r~~e~~fgdp~~p~GG~~l~h~a~~Rl~Lrr~ 901 (2050)
T 3cmu_A 863 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 901 (2050)
T ss_dssp EEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEE
T ss_pred EEeccccccchhhcCCCccccCCceeeeeeeEEEEEEee
Confidence 99999 888873 11122334677899999999999986
No 24
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.03 E-value=1.7e-09 Score=104.69 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCC--C--ccHHHHHHHHHHHHHHHHHhcCceEEEEeccC-CcCCC----C
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDS--A--LDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR-KENEQ----L 183 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~--~--~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR-k~ek~----p 183 (291)
+++..+..+...+++++||||+++.+....-. + ..+...+.++++.|+.+|+++||+|+++.|.+ ..+.. +
T Consensus 260 ~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g 339 (400)
T 3lda_A 260 RLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNP 339 (400)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC------------
T ss_pred HHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccC
Confidence 45555666667789999999999876542211 1 23455568899999999999999999999953 33321 0
Q ss_pred ccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 184 TVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 184 ~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
....-.|+..|++.||.|++|+|... ....+.|.|+| ++|.++
T Consensus 340 ~~~~p~gg~~l~~~ad~vl~L~~~~g----~~R~l~v~K~R------~~p~~e 382 (400)
T 3lda_A 340 DPKKPIGGNIMAYSSTTRLGFKKGKG----CQRLCKVVDSP------CLPEAE 382 (400)
T ss_dssp --------CHHHHHCSEEEEEEECST----TEEEEEEEECS------SSCSCE
T ss_pred CCccCCchhHHHHhcceEEEEEecCC----CcEEEEEEcCC------CCCCCc
Confidence 11123467889999999999998653 23579999986 678764
No 25
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.85 E-value=1.1e-07 Score=90.63 Aligned_cols=123 Identities=9% Similarity=0.034 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCC----CCCCc----cHHHHHHHHHHHHHHHHHhcCceEEEEeccCCc-
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGL----SDSAL----DRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKE- 179 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~----~~~~~----~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~- 179 (291)
.+.+++++.++.+.+..++++||||+++.+... +..+. ........+++.|+.+|+++||+|+++.|-|..
T Consensus 122 ~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~ 201 (356)
T 3hr8_A 122 DHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKI 201 (356)
T ss_dssp SSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCS
T ss_pred cCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecc
Confidence 367888888888888889999999999876531 11111 224567789999999999999999999997543
Q ss_pred CC-CCccccccccccccccCccEEEEEccCc----cc-cccceEEEEecccCCCCccCCCCCCc
Q psy4520 180 NE-QLTVNSVFGSAKATQESDNVLIIQQKFN----QN-LELKKFLQALPIERCPQFRDQPPGST 237 (291)
Q Consensus 180 ek-~p~lsDLrgSg~IeQdAD~Vi~L~R~~~----~~-~~~~~~l~I~KnR~~~~~R~g~~G~~ 237 (291)
.. -.......|.-.++.-+|.++.|.|... .+ ......+.|.||| .+|++..
T Consensus 202 g~~fg~p~~~~GG~~l~h~~~~rl~l~k~~~~k~g~~~~g~~~~vkvvKnr------~~~~~~~ 259 (356)
T 3hr8_A 202 GVMFGSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGNVISVKIVKNK------VAPPFKT 259 (356)
T ss_dssp SSSSCSCSSCTHHHHHHHHCSEEEEEEEEEEEEETTEEEEEEEEEEEEEES------SSCCCCE
T ss_pred ccccCCcccCCCcchhhhhCcEEEEEEeccccccCCcccccEEEEEEEeCC------CCCCCce
Confidence 21 1112356788889999999999998542 11 1124568999997 4777765
No 26
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.50 E-value=7.8e-07 Score=76.26 Aligned_cols=102 Identities=10% Similarity=0.097 Sum_probs=66.5
Q ss_pred HHHHHHHHH-----hCCCcEEEEeccccccCCCCCC----ccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcc
Q psy4520 115 MEAVEHAMY-----VYDTGHVIIDNVQFMLGLSDSA----LDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTV 185 (291)
Q Consensus 115 ~~~~r~~~~-----~~gv~lviIDyLqlm~~~~~~~----~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~l 185 (291)
.+.++.+.. .++.++||||+++......-.+ ..+...+.++++.|+.++++.|+.|++++|..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~------ 182 (231)
T 4a74_A 109 VQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN------ 182 (231)
T ss_dssp HHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccC------
Confidence 344444444 6789999999996553321111 1233346689999999999999999999996554
Q ss_pred ccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 186 NSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 186 sDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
+...+++.||.++++++.. .....+.+.|+| ++|.|.
T Consensus 183 ----~g~~~~~~~d~~l~l~~~~----~~~r~l~~~K~r------~~~~~~ 219 (231)
T 4a74_A 183 ----GGHILAHSATLRVYLRKGK----GGKRIARLIDAP------HLPEGE 219 (231)
T ss_dssp -----------CCSEEEEEEECT----TSCEEEEEESCC--------CCSC
T ss_pred ----cchhhHhhceEEEEEEecC----CCeEEEEEEeCC------CCCCce
Confidence 6677999999999999843 244579999986 678775
No 27
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.99 E-value=9.9e-05 Score=69.50 Aligned_cols=116 Identities=9% Similarity=0.075 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHh-----CCCcEEEEeccccccCCCCCC----ccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC-cC
Q psy4520 111 LKLVMEAVEHAMYV-----YDTGHVIIDNVQFMLGLSDSA----LDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK-EN 180 (291)
Q Consensus 111 i~~i~~~~r~~~~~-----~gv~lviIDyLqlm~~~~~~~----~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk-~e 180 (291)
..++++.++.+... .+.++||||+++-.......+ ..+...+.++++.|+.+|++.|+.|+++.|.+. .+
T Consensus 211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPD 290 (349)
T ss_dssp HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence 34566777777777 689999999997654321000 134456788999999999999999999999443 32
Q ss_pred C-CCccccccccccccccCccEEEEEccCccccccceEEEEecccCCCCccCCCCCC
Q psy4520 181 E-QLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGS 236 (291)
Q Consensus 181 k-~p~lsDLrgSg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR~~~~~R~g~~G~ 236 (291)
. .....-..+...+++.+|.++.+.|... ....+.+.|+| ++|.|.
T Consensus 291 ~~~~~~~~~~~G~~l~~~~~~rL~l~~~~~----~~Ri~k~~ks~------~~~~~~ 337 (349)
T 1pzn_A 291 AFFGDPTRPIGGHILAHSATLRVYLRKGKG----GKRIARLIDAP------HLPEGE 337 (349)
T ss_dssp -----------CCCCCTTCSEEEEEEECTT----SEEEEEESCSS------SSCCSE
T ss_pred cccCCccccCCcceEeecCcEEEEEEEcCC----CeEEEEEEeCC------CCCCeE
Confidence 1 0011224566788999999999998643 23356677764 566653
No 28
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.88 E-value=0.00036 Score=66.15 Aligned_cols=111 Identities=12% Similarity=0.125 Sum_probs=63.9
Q ss_pred CHHHH-HHHHHHH--HHhCCCcEEEEeccccccCCCC----CC------ccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLV-MEAVEHA--MYVYDTGHVIIDNVQFMLGLSD----SA------LDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i-~~~~r~~--~~~~gv~lviIDyLqlm~~~~~----~~------~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+.+++ ++.++.+ ++...+++||||.+|-+....+ .+ ..+.+..+..+++|-.+|+++||+|+++-|-
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 67777 7766665 5667799999999987753211 11 1244556778888899999999999999998
Q ss_pred CCcC---CCCccccccccccccccCccEEEEEccCc-cc----cccceEEEEeccc
Q psy4520 177 RKEN---EQLTVNSVFGSAKATQESDNVLIIQQKFN-QN----LELKKFLQALPIE 224 (291)
Q Consensus 177 Rk~e---k~p~lsDLrgSg~IeQdAD~Vi~L~R~~~-~~----~~~~~~l~I~KnR 224 (291)
|+.. ..|.. .|-..+ --|-.-+.|-|-.. ++ ....+.+.+.|+|
T Consensus 172 ~k~G~~fg~p~~---~GG~~l-~~ss~Rl~lrk~~~ik~~~~~~G~~~~v~~~k~k 223 (333)
T 3io5_A 172 YETQEMFSKTVM---GGGTGP-MYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSR 223 (333)
T ss_dssp ------------------CCG-GGGSSEEEEEEEC----------CEEEEEEEECS
T ss_pred eecCcccCCCCC---CCccee-eeeeEEEEEEeccccccCCccEEeEEEEeEEEEE
Confidence 8843 44542 333334 55555666644332 11 1123446667776
No 29
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.85 E-value=0.00026 Score=69.76 Aligned_cols=105 Identities=7% Similarity=0.079 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccC-CcCCCCccc
Q psy4520 108 PQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR-KENEQLTVN 186 (291)
Q Consensus 108 ~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR-k~ek~p~ls 186 (291)
..+..+....+...+...+.++||||+++-+.... +..+ ..+.+..|-+.+++.|+.|++++|.. +.+.
T Consensus 353 ~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~----~~~~-~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~----- 422 (525)
T 1tf7_A 353 SAGLEDHLQIIKSEINDFKPARIAIDSLSALARGV----SNNA-FRQFVIGVTGYAKQEEITGLFTNTSDQFMGA----- 422 (525)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSS----CHHH-HHHHHHHHHHHHHHTTCEEEEEEECSSSSCC-----
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhC----ChHH-HHHHHHHHHHHHHhCCCEEEEEECcccccCc-----
Confidence 35677777777777778899999999997654321 1122 33334444445567899999999954 4321
Q ss_pred ccccc-ccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 187 SVFGS-AKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 187 DLrgS-g~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
+.++ ..++..||.|++|+.-+.. ......+.|.|+|
T Consensus 423 -~~~~~~~l~~~~D~vi~L~~ge~~-~~~~R~l~v~K~R 459 (525)
T 1tf7_A 423 -HSITDSHISTITDTIILLQYVEIR-GEMSRAINVFKMR 459 (525)
T ss_dssp -CSSCSSCCTTTCSEEEEEEEEEET-TEEEEEEEEEEES
T ss_pred -ccccCcccceeeeEEEEEEEEEeC-CEEEEEEEEEECC
Confidence 4444 5578899999999865532 2334569999987
No 30
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.70 E-value=0.00082 Score=57.93 Aligned_cols=106 Identities=7% Similarity=0.108 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccc
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSV 188 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDL 188 (291)
..++++.+.+......++.+++|+|+.+-...... +... ..+.+..|...+++.|+.|++++|.-+... ..+
T Consensus 118 ~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~---d~~~-~~~~l~~l~~~l~~~g~tii~vtH~~~~~~----~~~ 189 (251)
T 2ehv_A 118 FNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE---EERK-IREVLLKLNTILLEMGVTTILTTEAPDPQH----GKL 189 (251)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS---SGGG-HHHHHHHHHHHHHHHCCEEEEEECCC--------CCS
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC---CHHH-HHHHHHHHHHHHHHCCCeEEEEECCCCCCc----ccc
Confidence 35778888887777889999999999965543211 1111 222233344444677999999999544321 012
Q ss_pred cccccccccC-ccEEEEEccCccccccceEEEEeccc
Q psy4520 189 FGSAKATQES-DNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 189 rgSg~IeQdA-D~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
.+ -.+++-| |.|+++.+.... ......+.|.|.|
T Consensus 190 ~~-~~i~~~~aD~vi~l~~~~~~-~~~~r~l~i~K~r 224 (251)
T 2ehv_A 190 SR-YGIEEFIARGVIVLDLQEKN-IELKRYVLIRKMR 224 (251)
T ss_dssp SS-SSCGGGGCSEEEEEEEEECS-SSEEEEEEEEEET
T ss_pred cc-cChhhEeeeEEEEEeeeccC-CeeEEEEEEEEcc
Confidence 22 3467888 999999876432 2234568999976
No 31
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=97.09 E-value=0.0025 Score=58.19 Aligned_cols=39 Identities=8% Similarity=-0.141 Sum_probs=32.4
Q ss_pred cHHHHHHHHcCCeEEEEeccCCHHHHHHHHHHHHhcCCCcc
Q psy4520 2 SEYSLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLD 42 (291)
Q Consensus 2 ~q~al~la~qG~~v~~fSlEM~~~ql~~Rml~~~a~~~~~~ 42 (291)
.|++.+.+++|.++++|++|.++.++..++-+ .|.++..
T Consensus 39 ~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~--~G~dl~~ 77 (260)
T 3bs4_A 39 FYILSRKLKSDNLVGMFSISYPLQLIIRILSR--FGVDVIK 77 (260)
T ss_dssp HHHHHHHHHTTCEEEEEECSSCHHHHHHHHHH--TTCCHHH
T ss_pred HHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHH--cCCCHHH
Confidence 47888899999999999999999999999743 4665543
No 32
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.61 E-value=0.023 Score=50.40 Aligned_cols=77 Identities=16% Similarity=0.078 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccc
Q psy4520 111 LKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFG 190 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrg 190 (291)
..++.+.++........++||||+.|++.. ++++.|+.+|.. ++||++.-|-..-..+| ..+
T Consensus 74 ~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~-------------~~ve~l~~L~~~-gi~Vil~Gl~~df~~~~----F~~ 135 (223)
T 2b8t_A 74 APEILNYIMSNSFNDETKVIGIDEVQFFDD-------------RICEVANILAEN-GFVVIISGLDKNFKGEP----FGP 135 (223)
T ss_dssp THHHHHHHHSTTSCTTCCEEEECSGGGSCT-------------HHHHHHHHHHHT-TCEEEEECCSBCTTSSB----CTT
T ss_pred HHHHHHHHHHHhhCCCCCEEEEecCccCcH-------------HHHHHHHHHHhC-CCeEEEEeccccccCCc----CCC
Confidence 355666655443344589999999998531 245566777775 99999997733322222 122
Q ss_pred cccccccCccEEEEE
Q psy4520 191 SAKATQESDNVLIIQ 205 (291)
Q Consensus 191 Sg~IeQdAD~Vi~L~ 205 (291)
|..+-..||.|.-+.
T Consensus 136 ~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 136 IAKLFTYADKITKLT 150 (223)
T ss_dssp HHHHHHHCSEEEECC
T ss_pred cHHHHHHhheEeecc
Confidence 345556899998864
No 33
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.53 E-value=0.52 Score=44.44 Aligned_cols=67 Identities=15% Similarity=0.284 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCC-C--ccHHHHHHHHHHHHHHHHHhcCceEEEEeccCC
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDS-A--LDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRK 178 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~-~--~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk 178 (291)
..+.+++.+.....+++ +||||+++.+...... + ....+...+++++|..++++.||.|++...+-.
T Consensus 168 ~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~s 237 (331)
T 2vhj_A 168 DFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTS 237 (331)
T ss_dssp CHHHHHHHHHHHHHHCS--EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCSS
T ss_pred CHHHHHHHHHHHHhhCC--EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCcc
Confidence 56777777766666666 9999999876432210 0 011245678999999999999999888766443
No 34
>1bwv_A Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: c.1.14.1 d.58.9.1 PDB: 1iwa_A 1bxn_A
Probab=89.12 E-value=2.8 Score=41.47 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=53.5
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
+.+..+.++=.+..+|..+-++ .+.++++++++++ .+.|...++||++. +.. .++.|+..|++
T Consensus 232 eai~rA~~eTGe~k~~~~NiTa-~~~~eM~~Ra~~a-~e~G~~~~mvd~~~---G~~------------a~~~l~~~~r~ 294 (493)
T 1bwv_A 232 EAVNKASAATGEVKGHYLNVTA-ATMEEMYARANFA-KELGSVIIMIDLVI---GYT------------AIQTMAKWARD 294 (493)
T ss_dssp HHHHHHHHHHTSCCEEEEECCC-SSHHHHHHHHHHH-HHTTCSEEEEEGGG---CHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHhhCCcceeeccCCC-CCHHHHHHHHHHH-HHhCCCeEEEeccc---ChH------------HHHHHHHHHhh
Confidence 4455566776777899888665 3699999999986 56899999999982 311 47788889988
Q ss_pred cCceEEE
Q psy4520 166 SHCHVTL 172 (291)
Q Consensus 166 ~~VpVil 172 (291)
+++|+++
T Consensus 295 ~~l~lh~ 301 (493)
T 1bwv_A 295 NDMILHL 301 (493)
T ss_dssp TTCEEEE
T ss_pred cCcEEEe
Confidence 8888774
No 35
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=87.89 E-value=3 Score=37.92 Aligned_cols=115 Identities=10% Similarity=-0.034 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccchhhhhhHHHHHHhhcCCCeE
Q psy4520 22 VQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLLDNLDKFDEYSDWFKTLPMY 101 (291)
Q Consensus 22 M~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~pl~ 101 (291)
|+.+++..++-.....+|.......--. .+| +...+.|+ ...+.+++..||
T Consensus 107 ~s~~ei~~~l~~al~~vP~a~GvnNHmG--S~~-------------T~~~~~M~--------------~vm~~L~~~gL~ 157 (261)
T 2qv5_A 107 DPAKVNIDRLHRSMAKITNYTGVMNYLG--GRF-------------LAEQSALE--------------PVMRDIGKRGLL 157 (261)
T ss_dssp SCHHHHHHHHHHHHTTCCCCSEEEEEEC--TTG-------------GGCHHHHH--------------HHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecccc--cch-------------hcCHHHHH--------------HHHHHHHHCCCE
Confidence 8899999999998888887654211000 000 11112232 123334444566
Q ss_pred EEcCCC-CCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 102 FLTFHG-PQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 102 i~d~~g-~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
+.|.-. ..| ++....+++|+..+.-|=. + +. ......+..-..++..+|++.| .+|++.||+..
T Consensus 158 FlDS~Ts~~S------~a~~~A~~~gvp~~~rdvF--L-D~----~~~~~~I~~qL~~a~~~Ar~~G-~AIaIGhp~p~ 222 (261)
T 2qv5_A 158 FLDDGSSAQS------LSGGIAKAISAPQGFADVL--L-DG----EVTEASILRKLDDLERIARRNG-QAIGVASAFDE 222 (261)
T ss_dssp EEECSCCTTC------CHHHHHHHHTCCEEECSEE--T-TS----SCSHHHHHHHHHHHHHHHHHHS-EEEEEEECCHH
T ss_pred EEcCCCCccc------HHHHHHHHcCCCeEEeeee--c-CC----CCCHHHHHHHHHHHHHHHHhcC-cEEEEeCCCHH
Confidence 666432 222 2233345667665443322 1 11 1223567778899999999999 66778998875
No 36
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.44 E-value=5.5 Score=38.78 Aligned_cols=104 Identities=15% Similarity=0.186 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccc
Q psy4520 111 LKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFG 190 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrg 190 (291)
+++++.+.-........+.|+||....+.... .........+.+-++.+++ .|+.|++++|.-..-. +...
T Consensus 123 l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~---~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~-----~~~~ 193 (525)
T 1tf7_A 123 LSALIERINYAIQKYRARRVSIDSVTSVFQQY---DASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYG-----PIAR 193 (525)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT---CCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSS-----CSST
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc---CCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCcc-----cccc
Confidence 44555444444455678999999995443221 2334556667777777765 6999999999543211 1111
Q ss_pred cccccccCccEEEEEccCccccccceEEEEeccc
Q psy4520 191 SAKATQESDNVLIIQQKFNQNLELKKFLQALPIE 224 (291)
Q Consensus 191 Sg~IeQdAD~Vi~L~R~~~~~~~~~~~l~I~KnR 224 (291)
-+-.+.-||.|++|..... .......+.+.|.|
T Consensus 194 ~~i~~~laD~vi~L~~~~~-~G~~~r~l~~~k~r 226 (525)
T 1tf7_A 194 YGVEEFVSDNVVILRNVLE-GERRRRTLEILKLR 226 (525)
T ss_dssp TSCHHHHCSEEEEEEEECS-TTCCEEEEEEEEET
T ss_pred ccceeeeeeEEEEEEEEcc-CCceeEEEEEEECC
Confidence 1112445999999976432 12233457788865
No 37
>3kdn_A Rubisco, ribulose bisphosphate carboxylase; ribulose-1,5-bisphosphate carboxylase/oxygenase, Ca dioxide fixation, lyase, magnesium; HET: KCX CAP; 2.09A {Thermococcus kodakaraensis} PDB: 3a13_A* 3kdo_A* 3a12_A* 1geh_A*
Probab=86.75 E-value=3.6 Score=40.21 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=54.0
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
+.+.+|.++=.+..+|..+-++. .+++++++++++ +.|...|.||++. .+. ..++.|++.+.+
T Consensus 211 eai~rA~~eTGe~k~y~~NiTa~--~~eM~~Ra~~a~-e~G~~~~mvd~~~--~G~------------~a~~~l~~~~~~ 273 (444)
T 3kdn_A 211 KIIDKVENETGEKKTWFANITAD--LLEMEQRLEVLA-DLGLKHAMVDVVI--TGW------------GALRYIRDLAAD 273 (444)
T ss_dssp HHHHHHHHHHCCCCEEEEECCSS--HHHHHHHHHHHH-HHTCCEEEEEHHH--HCH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCcceEEeecCCC--HHHHHHHHHHHH-HcCCCEEEEcccc--ccH------------HHHHHHHHhccc
Confidence 55566777777888999887763 899999999975 4688999999872 221 157888888888
Q ss_pred cCceEEE
Q psy4520 166 SHCHVTL 172 (291)
Q Consensus 166 ~~VpVil 172 (291)
+++|+++
T Consensus 274 ~~l~lh~ 280 (444)
T 3kdn_A 274 YGLAIHG 280 (444)
T ss_dssp HTCEEEE
T ss_pred cCeEEEE
Confidence 9998885
No 38
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=86.15 E-value=3.7 Score=36.90 Aligned_cols=112 Identities=8% Similarity=0.006 Sum_probs=64.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCccccccccchhhhhccccccccccCCCCchhHHHHHhhccchhhhhhHHHHHHhhcCCCe
Q psy4520 21 EVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMELVRKPLLDNLDKFDEYSDWFKTLPM 100 (291)
Q Consensus 21 EM~~~ql~~Rml~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~pl 100 (291)
.|+..++..++-.....+|........-. .+=+...+.|++ ..+.+++..|
T Consensus 79 ~~s~~ei~~~l~~al~~vP~a~GvnNHmG---------------S~~T~~~~~m~~--------------vm~~l~~~gL 129 (245)
T 2nly_A 79 NLSVGEVKSRVRKAFDDIPYAVGLNNHMG---------------SKIVENEKIMRA--------------ILEVVKEKNA 129 (245)
T ss_dssp TCCHHHHHHHHHHHHHHSTTCCEEEEEEC---------------TTGGGCHHHHHH--------------HHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEecccc---------------cchhcCHHHHHH--------------HHHHHHHCCC
Confidence 57888999999888888887643211000 000111223322 2334444446
Q ss_pred EEEcCCC-CCCHHHHHHHHHHHHHhCCCcE----EEEec-cccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 101 YFLTFHG-PQPLKLVMEAVEHAMYVYDTGH----VIIDN-VQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 101 ~i~d~~g-~~~i~~i~~~~r~~~~~~gv~l----viIDy-Lqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
|+.|..+ .. .++....+++|+.. |+||+ - .....+..-..++..+|++.|.. |++.
T Consensus 130 ~fvDS~Ts~~------S~a~~~A~~~gvp~~~rdvFLD~~~-----------~~~~~I~~ql~~a~~~A~~~G~a-IaIG 191 (245)
T 2nly_A 130 FIIDSGTSPH------SLIPQLAEELEVPYATRSIFLDNTH-----------SSRKEVIKNMRKLAKKAKQGSEP-IGIG 191 (245)
T ss_dssp EEEECCCCSS------CSHHHHHHHTTCCEEECCEESCCTT-----------CCHHHHHHHHHHHHHHHHTTSCC-EEEE
T ss_pred EEEcCCCCcc------cHHHHHHHHcCCCeEEeeEECCCCC-----------CCHHHHHHHHHHHHHHHhhcCcE-EEEE
Confidence 6666432 22 23334456778765 45554 2 22356777788899999999954 5589
Q ss_pred ccCCc
Q psy4520 175 HPRKE 179 (291)
Q Consensus 175 hpRk~ 179 (291)
||+..
T Consensus 192 hp~p~ 196 (245)
T 2nly_A 192 HVGVR 196 (245)
T ss_dssp ECSTT
T ss_pred CCCCC
Confidence 98875
No 39
>1wdd_A Ribulose bisphosphate carboxylase large chain; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: c.1.14.1 d.58.9.1 PDB: 3axk_A* 3axm_A* 1rlc_L* 4rub_A* 3rub_L 1ej7_L 1aa1_L* 1aus_L 1rbo_L* 1rco_L* 1rcx_L* 1rxo_L* 1gk8_A* 1ir2_A* 1uzd_A* 1uzh_A* 2v69_A* 1uwa_A* 2v63_A* 2v67_A* ...
Probab=85.19 E-value=4.2 Score=40.08 Aligned_cols=71 Identities=8% Similarity=0.037 Sum_probs=53.2
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
+.+..|.++=.+..+|..+-++. +.++++++++++ .+.|...+.||++. .+. ..++.|+..|++
T Consensus 223 eai~rA~~eTGe~k~~~~NiTa~-~~~eM~~Ra~~a-~e~G~~~~mvd~~~--~G~------------~a~~~l~~~~r~ 286 (477)
T 1wdd_A 223 EAIYKSQAETGEIKGHYLNATAG-TCEEMIKRAVFA-RELGVPIVMHDYLT--GGF------------TANTSLAHYCRD 286 (477)
T ss_dssp HHHHHHHHHHSSCCEEEEECCCS-SHHHHHHHHHHH-HHHTCSEEEEEHHH--HCH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCcceeecCcCCC-CHHHHHHHHHHH-HHhCCCeEEEeccc--cCc------------HHHHHHHHhhcc
Confidence 44555667767788998886653 699999999987 55788999999882 221 147788888888
Q ss_pred cCceEEE
Q psy4520 166 SHCHVTL 172 (291)
Q Consensus 166 ~~VpVil 172 (291)
+++|+++
T Consensus 287 ~~l~lh~ 293 (477)
T 1wdd_A 287 NGLLLHI 293 (477)
T ss_dssp HTCEEEE
T ss_pred CCeEEEe
Confidence 8888774
No 40
>2d69_A Ribulose bisphosphate carboxylase; alpha/beta barrel, structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.90A {Pyrococcus horikoshii} SCOP: c.1.14.1 d.58.9.1 PDB: 2cxe_A 2cwx_A
Probab=83.35 E-value=5.2 Score=38.93 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=53.2
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
+.+.++.++=.+..+|..+-++. .++++++++++ .+.|...+.||++. .+. ..++.|...|++
T Consensus 208 eai~ra~~eTGe~k~y~~NiTa~--~~em~~Ra~~a-~e~G~~~~mvd~~~--~G~------------~a~~~l~~~~r~ 270 (430)
T 2d69_A 208 RVRDRVEAETGETKEYLINITGP--VNIMEKRAEMV-ANEGGQYVMIDIVV--AGW------------SALQYMREVTED 270 (430)
T ss_dssp HHHHHHHHHHSSCCEEECBCCSS--HHHHHHHHHHH-HHHTCCEEEEEHHH--HCH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCccEEEeecCCC--HHHHHHHHHHH-HHcCCCeEEEEeec--cCh------------HHHHHHHHHhhc
Confidence 45556677777788999887763 89999999996 66788999999982 221 147788888888
Q ss_pred cCceEEE
Q psy4520 166 SHCHVTL 172 (291)
Q Consensus 166 ~~VpVil 172 (291)
.++|++.
T Consensus 271 ~~l~lh~ 277 (430)
T 2d69_A 271 LGLAIHA 277 (430)
T ss_dssp HTCEEEE
T ss_pred cCcEEEe
Confidence 8888774
No 41
>4f0h_A Ribulose bisphosphate carboxylase large chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_A 4f0m_A 1bwv_A* 1iwa_A 1bxn_A
Probab=82.36 E-value=8 Score=38.26 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=50.9
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
+.+..|.++=.+..+|..+-++. +.++++++++++ .+.|...+.||++ . +- . .++.|...|++
T Consensus 232 eai~rA~~eTGe~K~~~~NiTa~-~~~eM~~Ra~~a-~e~G~~~vmvd~~--~-G~--------~----a~~~La~~~r~ 294 (493)
T 4f0h_A 232 EAVNKAAAATGEVKGHYLNVTAA-TMEEMYARAQLA-KELGSVIIMIDLV--I-GY--------T----AIQTMAKWARD 294 (493)
T ss_dssp HHHHHHHHHHSSCCEEEEECCCS-SHHHHHHHHHHH-HHHTCSEEEEEGG--G-CH--------H----HHHHHHHHHHH
T ss_pred HHHHHHHHhHCCcceEEeecCCC-CHHHHHHHHHHH-HhcCCCeEEEecc--c-cc--------c----hhHHHHHHHHH
Confidence 45556677766777887775542 689999999996 4557788899975 2 21 1 47788889999
Q ss_pred cCceEEE
Q psy4520 166 SHCHVTL 172 (291)
Q Consensus 166 ~~VpVil 172 (291)
+++|+++
T Consensus 295 ~~l~LH~ 301 (493)
T 4f0h_A 295 NDMILHL 301 (493)
T ss_dssp HTCEEEE
T ss_pred cCceEEe
Confidence 9998864
No 42
>3qfw_A Ribulose-1,5-bisphosphate carboxylase/oxygenase L subunit; structural genomics, PSI-2, protein structure initiative; 1.79A {Rhodopseudomonas palustris}
Probab=82.32 E-value=7 Score=37.39 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=38.1
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNV 135 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyL 135 (291)
+.+.+|.++=.+..+|..+.++ +.++++++++++ .+.|...|.||++
T Consensus 186 eai~ra~~eTGe~k~y~~NiTa--~~~em~~ra~~a-~e~G~~~~mvd~~ 232 (378)
T 3qfw_A 186 KAVREANAARGGRTLYAPNISG--TLDDMRRQLGVI-RDEGIGAVLVAPM 232 (378)
T ss_dssp HHHHHHHHHHTCCCEEECBCCS--SHHHHHHHHHHH-HHHTCCEEEECHH
T ss_pred HHHHHHHHhhCCccEEEeecCC--CHHHHHHHHHHH-HHcCCCEEEEecc
Confidence 4555677777778899999876 599999999986 5568899999987
No 43
>3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia fungorum}
Probab=80.86 E-value=12 Score=36.46 Aligned_cols=47 Identities=11% Similarity=0.016 Sum_probs=37.9
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNV 135 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyL 135 (291)
+.+..|.++-.+..+|..+-++ +.++++++++++ .+.|...|.||++
T Consensus 217 eai~rA~~eTGe~k~y~~NiT~--~~~em~~Ra~~a-~e~G~~~~mvd~~ 263 (432)
T 3nwr_A 217 SEVRRYRERSGRPVMVAFNITD--DLDAMRRHAELV-EREGGSCVMASIN 263 (432)
T ss_dssp HHHHHHHHHHSCCCEEEEECCS--CHHHHHHHHHHH-HHTTCCEEEEEHH
T ss_pred HHHHHHHHHhCCcceEEeecCC--CHHHHHHHHHHH-HHcCCCEEEEecc
Confidence 4555677777788899888764 689999999986 5678899999987
No 44
>3bdw_A Natural killer cells antigen CD94; NK cells, receptor, glycoprotein, lectin, signal-A transmembrane, immune system receptor; 2.50A {Homo sapiens} SCOP: d.169.1.1 PDB: 3cdg_J 1b6e_A 3cii_G
Probab=80.82 E-value=2 Score=32.86 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=40.0
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccce
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
.|.| ...|.+.++.|++ ...++.++.++|.+.||.|+.-.+.+-+-||.
T Consensus 5 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l~ 53 (123)
T 3bdw_A 5 CQEK-WVGYRCNCYFISS-EQKTWNESRHLCASQKSSLLQLQNTDELDFMS 53 (123)
T ss_dssp CTTT-CEEETTEEEEECS-SCBCHHHHHHHHHHTTCEECCCSCGGGGGGGT
T ss_pred CCCC-ceEECCEEEEEeC-CCCCHHHHHHHHHHCCCeeEEECCHHHHHHHH
Confidence 5555 4457899998876 46799999999999999999988888777763
No 45
>2yhf_A C-type lectin domain family 5 member A; immune system; 1.90A {Homo sapiens}
Probab=80.78 E-value=1.1 Score=34.08 Aligned_cols=47 Identities=21% Similarity=0.549 Sum_probs=38.1
Q ss_pred CCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 233 ~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
|.| ...|.+.++.|++ ...++.++.++|.+.||.|+.-.|++-+-||
T Consensus 3 p~g-w~~~~~~Cy~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 49 (118)
T 2yhf_A 3 PKD-WEFYQARCFFLST-SESSWNESRDFCKGKGSTLAIVNTPEKLKFL 49 (118)
T ss_dssp CTT-CEEETTEEEEECS-SCBCHHHHHHHHHTTTCEECCCCSHHHHHHH
T ss_pred CCC-cEEeCCEEEEEeC-CCCCHHHHHHHHhhcCCEEEEeCCHHHHHHH
Confidence 344 3457899998887 5789999999999999999998887766555
No 46
>1dv8_A Asialoglycoprotein receptor 1; C-type lectin CRD, signaling protein; 2.30A {Homo sapiens} SCOP: d.169.1.1
Probab=79.47 E-value=1.2 Score=34.16 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=35.9
Q ss_pred eeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 238 ATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 238 l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
..|.+.++.|+. ...++.++.++|.+.||.|+.-.+.+-+-||
T Consensus 6 ~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 48 (128)
T 1dv8_A 6 VEHERSCYWFSR-SGKAWADADNYCRLEDAHLVVVTSWEEQKFV 48 (128)
T ss_dssp EEETTEEEEECS-SCBCHHHHHHHHHHTTCEECCCCSHHHHHHH
T ss_pred eecCCEEEEEEC-CCcCHHHHHHHHhhCCCEEcccCCHHHHHHH
Confidence 457789988875 5789999999999999999988887766555
No 47
>3ff9_A Killer cell lectin-like receptor subfamily G member 1; natural killer cell receptor KLTG1, glycoprotein, membrane, phosphoprotein, signal-anchor; 1.80A {Mus musculus} SCOP: d.169.1.0 PDB: 3ff8_C
Probab=78.45 E-value=1.6 Score=33.06 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=37.2
Q ss_pred CCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 233 ~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
|.| ...|.+.++.|.+ ...++.++.++|.+.||.|+.-.|++-+-||
T Consensus 3 p~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 49 (115)
T 3ff9_A 3 PIL-WTRNGSHCYYFSM-EKKDWNSSLKFCADKGSHLLTFPDNQGVKLF 49 (115)
T ss_dssp CTT-CEEETTEEEEECS-SCBCHHHHHHHHHHTTCEECCCTTSCCHHHH
T ss_pred Ccc-ceecCCEEEEEEc-CCcCHHHHHHHHHhcCCeeeeeCCHHHHHHH
Confidence 344 3457789998876 5788999999999999999987777665554
No 48
>3g8k_A Lectin-related NK cell receptor LY49L1; natural killer cell receptor, immune system; 2.00A {Mus musculus} SCOP: d.169.1.1 PDB: 1qo3_C 3cad_A
Probab=78.34 E-value=1.1 Score=34.56 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=39.9
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
.|.| ...|.+.++.|++ ...++.++.++|.+.||.|+.-.|++-+-||
T Consensus 7 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~fl 54 (130)
T 3g8k_A 7 FEKY-WFCYGIKCYYFVM-DRKTWSGCKQTCQISSLSLLKIDNEDELKFL 54 (130)
T ss_dssp BCSE-EEEETTEEEEEBS-SCBCHHHHHHHHHHTTCEECCCCSHHHHHHH
T ss_pred CChh-hhhhCCEEEEEEC-CCCCHHHHHHHHHhCCCeEcccCCHHHHHHH
Confidence 5555 5668899999886 5889999999999999999998888766665
No 49
>3rs1_A C-type lectin domain family 2 member I; C-type lectin-like, ligand of NK receptor, natural killer CE receptors, surface of activated T lymphocytes; 1.94A {Mus musculus}
Probab=78.02 E-value=1.5 Score=33.47 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=40.8
Q ss_pred CCCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccce
Q psy4520 231 DQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282 (291)
Q Consensus 231 ~g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
..|.| ...|.+.++.|++ ...++.++.++|.+.||.|+.-.|++-+-||.
T Consensus 7 ~Cp~g-w~~~~~~Cy~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l~ 56 (122)
T 3rs1_A 7 ACSKN-WTGVGNKCFYFSG-YPRNWTFAQAFCMAQEAQLARFDNEEELIFLK 56 (122)
T ss_dssp SCCTT-CEEETTEEEEECS-SCBCHHHHHHHHHHTTCEECCCSSHHHHHHHH
T ss_pred CCChh-heecCCEEEEEEC-CccCHHHHHHHHHhcCCEEeeeCCHHHHHHHH
Confidence 45666 5568899998885 67899999999999999999988887776653
No 50
>2e3x_C Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}
Probab=77.43 E-value=2 Score=32.56 Aligned_cols=48 Identities=29% Similarity=0.560 Sum_probs=38.6
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 281 (291)
.|.| ...|.|.++.|++ ...++.++.++|.+ .||.|+.-.+++-+-||
T Consensus 3 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l 52 (122)
T 2e3x_C 3 CPSG-WLSYEQHCYKGFN-DLKNWTDAEKFCTEQKKGSHLVSLHSREEEKFV 52 (122)
T ss_dssp CCSS-CEEETTEEEEECC-CCBCHHHHHHHHHHHSTTCCBCCCSSHHHHHHH
T ss_pred CCcc-hhhhCCEeEEEEC-CCcCHHHHHHHHhccCCCCEECccCCHHHHHHH
Confidence 4555 4558899998876 67899999999999 89999988887765554
No 51
>1hq8_A NKG2-D; homodimer, CIS-proline, apoptosis; 1.95A {Mus musculus} SCOP: d.169.1.1 PDB: 1jsk_A 1kcg_A*
Probab=77.32 E-value=1.9 Score=33.05 Aligned_cols=49 Identities=27% Similarity=0.410 Sum_probs=40.0
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccce
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
.|.| ...|.+.++.|++ ...++.++.++|.+.||.|+.-.+.+-+-||.
T Consensus 6 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~fl~ 54 (123)
T 1hq8_A 6 CPNN-WICHRNNCYQFFN-EEKTWNQSQASCLSQNSSLLKIYSKEEQDFLK 54 (123)
T ss_dssp CSTT-CEEETTEEEEEEE-EEECHHHHHHHHHTTTCEECCCSCTTTTGGGG
T ss_pred CCcc-cEEcCCEEEEEeC-CccCHHHHHHHHHhcCCEecccCCHHHHHHHH
Confidence 5555 4457899999876 46899999999999999999888887777764
No 52
>2ox9_A Collectin placenta 1; C-type lectin, sugar binding protein; HET: GAL NAG FUC; 1.95A {Mus musculus} PDB: 2ox8_A
Probab=76.68 E-value=1.7 Score=33.91 Aligned_cols=49 Identities=27% Similarity=0.463 Sum_probs=39.7
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccce
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
+|.| ...|.+.++.|++ ...++.++.++|.+.||.|+.-.|++-+-||.
T Consensus 5 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l~ 53 (140)
T 2ox9_A 5 CPPH-WKNFTDKCYYFSL-EKEIFEDAKLFCEDKSSHLVFINSREEQQWIK 53 (140)
T ss_dssp CCTT-CEEETTEEEEECS-CCBCHHHHHHHHHHTTCEECCCCSHHHHHHHH
T ss_pred CCcC-ceEcCCEEEEEEC-CCcCHHHHHHHHHhcCCEEeeeCCHHHHHHHH
Confidence 5555 4457899998884 67899999999999999999988887666653
No 53
>3ubu_B Agglucetin subunit beta-2; platelet inhibiting, agkisacucetin, dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding; 1.91A {Deinagkistrodon acutus}
Probab=76.66 E-value=1.3 Score=33.69 Aligned_cols=48 Identities=27% Similarity=0.593 Sum_probs=39.6
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 281 (291)
+|.| ...|.|.+++|+. ...++.++.++|.+ .||.|+.-.+++-+-||
T Consensus 4 Cp~g-w~~~~~~CY~~~~-~~~tw~~A~~~C~~~~~g~~La~i~s~~e~~~l 53 (126)
T 3ubu_B 4 CPLR-WSAYEGHCYLVVK-EKKTWDDAEKFCTEQRKGGHLVSVHSREEADFL 53 (126)
T ss_dssp CCTT-CEEETTEEEEEEE-EEECHHHHHHHHHHHSTTCEECCCCSHHHHHHH
T ss_pred CCCC-CeEcCCEeEEEeC-CCCCHHHHHHHHhccCCCcEECccCCHHHHHHH
Confidence 5656 4568899999887 57899999999999 99999998887766655
No 54
>3ff7_C Killer cell lectin-like receptor subfamily G member 1; KLRG1-cadherin complex, calcium, cell adhesion, cell junction, cell membrane; 1.80A {Homo sapiens} SCOP: d.169.1.0
Probab=76.37 E-value=1.8 Score=32.62 Aligned_cols=44 Identities=23% Similarity=0.457 Sum_probs=36.0
Q ss_pred ceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 237 TATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 237 ~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
...|.+.++.|++ ...++.++.++|.+.||.|+.-.|++-+-||
T Consensus 5 w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 48 (112)
T 3ff7_C 5 WMKYGNHCYYFSV-EEKDWNSSLEFCLARDSHLLVITDNQEMSLL 48 (112)
T ss_dssp CEEETTEEEEECS-SCBCHHHHHHHHHTTTCEECCCCSHHHHHHH
T ss_pred ceEeCCEEEEEeC-CccCHHHHHHHHhhcCCeEeeECCHHHHHHH
Confidence 3457789988875 4889999999999999999988777665554
No 55
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=75.98 E-value=16 Score=32.13 Aligned_cols=69 Identities=9% Similarity=0.133 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+....+|.+ -.+-+++++|+-. .+ -| ...+..+.+.|+.++++ ++.|++++|.-..
T Consensus 160 Qrv~iAraL--~~~p~lllLDEPt--s~-----LD-~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~------------- 215 (257)
T 1g6h_A 160 KLVEIGRAL--MTNPKMIVMDEPI--AG-----VA-PGLAHDIFNHVLELKAK-GITFLIIEHRLDI------------- 215 (257)
T ss_dssp HHHHHHHHH--HTCCSEEEEESTT--TT-----CC-HHHHHHHHHHHHHHHHT-TCEEEEECSCCST-------------
T ss_pred HHHHHHHHH--HcCCCEEEEeCCc--cC-----CC-HHHHHHHHHHHHHHHHC-CCEEEEEecCHHH-------------
Confidence 445555544 4567899999983 11 12 24456788888998877 9999999995432
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 216 -~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 216 -VLNYIDHLYVMFN 228 (257)
T ss_dssp -TGGGCSEEEEEET
T ss_pred -HHHhCCEEEEEEC
Confidence 5577899999864
No 56
>2zvi_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; methionine salvage pathway, amino-acid biosynthesis, isomerase, magnesium, metal- binding; 2.30A {Bacillus subtilis}
Probab=75.96 E-value=8.7 Score=37.30 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=49.2
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
+.+.++.++=.+..+|..+-++ +.++++++++++ .+.|...+.||++. .+. ..++.|...+ +
T Consensus 209 eai~ra~~eTGe~k~y~~NiT~--~~~em~~Ra~~a-~e~G~~~~mvd~~~--~G~------------~a~~~l~~~~-~ 270 (425)
T 2zvi_A 209 QILKETYEQTGHKTLYAVNLTG--RTADLKDKARRA-AELGADALLFNVFA--YGL------------DVMQGLAEDP-E 270 (425)
T ss_dssp HHHHHHHHHHSCCCEEEEECCS--CGGGHHHHHHHH-HHTTCSEEEECGGG--TCH------------HHHHHHHHCT-T
T ss_pred HHHHHHHHHhCCcceeeCcCCC--CHHHHHHHHHHH-HHhCCCeEEEeeec--cCh------------HHHHHHHHhC-c
Confidence 4555567777777899888665 479999999997 56899999999983 211 1356666666 6
Q ss_pred cCceEEE
Q psy4520 166 SHCHVTL 172 (291)
Q Consensus 166 ~~VpVil 172 (291)
+++|+++
T Consensus 271 ~~l~lh~ 277 (425)
T 2zvi_A 271 IPVPIMA 277 (425)
T ss_dssp CCSCEEE
T ss_pred CCCEEEe
Confidence 7777653
No 57
>1ypq_A Oxidised low density lipoprotein (lectin-like) receptor 1; oxidized low density lipoprotein receptor, LOX-1, CTLD, C- type lectin like domain; 1.40A {Homo sapiens} SCOP: d.169.1.1 PDB: 1ypu_A 1yxk_A 3vlg_A 1ypo_A 1yxj_A
Probab=75.74 E-value=1.7 Score=33.64 Aligned_cols=49 Identities=24% Similarity=0.338 Sum_probs=39.7
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccce
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
+|.| ...|.+.++.|+. ...++.++.++|.+.||.|+.-.|.+-+-||.
T Consensus 9 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l~ 57 (135)
T 1ypq_A 9 CPQD-WIWHGENCYLFSS-GSFNWEKSQEKCLSLDAKLLKINSTADLDFIQ 57 (135)
T ss_dssp SCTT-SEEETTEEEEECS-SCBCHHHHHHHHHHTTCEECCCCSHHHHHHHH
T ss_pred CCcc-cEEcCCEEEEEEC-CccCHHHHHHHHHhCCCEEeEeCCHHHHHHHH
Confidence 5655 4568899998876 57899999999999999999888877665553
No 58
>1mpu_A NKG2-D type II integral membrane protein; C-type lectin-like domain, immune system; 2.50A {Homo sapiens} SCOP: d.169.1.1 PDB: 1hyr_B
Probab=74.95 E-value=2 Score=33.75 Aligned_cols=49 Identities=27% Similarity=0.466 Sum_probs=40.6
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccce
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
.|.| ...|.|.++.|++ ...++.++.++|.+.||.++.-.|.+-+-||.
T Consensus 21 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~fl~ 69 (138)
T 1mpu_A 21 CPKN-WICYKNNCYQFFD-ESKNWYESQASCMSQNASLLKVYSKEDQDLLK 69 (138)
T ss_dssp CCTT-CEECSSCEEEEEE-EEECHHHHHHHHHHTSCEECCCCCTTTCGGGG
T ss_pred CChh-heEeCCEEEEEEC-CCCCHHHHHHHHHhcCCEEeeeCCHHHHHHHH
Confidence 5555 4567899999886 46899999999999999999988888777775
No 59
>2vuv_A Codakine; sugar-binding protein, C-type, lectin, mannose, invertebrate; HET: CIT; 1.3A {Codakia orbicularis} PDB: 2vuz_A*
Probab=74.51 E-value=1.5 Score=33.77 Aligned_cols=47 Identities=19% Similarity=0.467 Sum_probs=37.5
Q ss_pred CCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 233 ~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
|.| ...|.+.++.|+. ...++.++.++|.+.||.|+.-.|.+-+-||
T Consensus 3 p~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 49 (129)
T 2vuv_A 3 PDG-WTQFLDLCYIYQS-AKASWASAQSSCQALGGILAEPDTACENEVL 49 (129)
T ss_dssp CTT-CEEETTEEEEEEE-EEECHHHHHHHHHHTTSEECCCCSHHHHHHH
T ss_pred Ccc-hhhhCCEEEEEEC-CCcCHHHHHHHHHhcCCEECccCCHHHHHHH
Confidence 444 3457789998887 4689999999999999999988887666555
No 60
>3gpr_C Rhodocetin subunit gamma; disulfide bond, lectin, secreted, toxin, cell adhesion; 3.20A {Calloselasma rhodostoma}
Probab=74.39 E-value=1.8 Score=33.46 Aligned_cols=48 Identities=27% Similarity=0.603 Sum_probs=38.5
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhcc--CCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 281 (291)
.|.| ...|.|.+++|++ ...++.++.++|.+. ||.|+.-.|++-+-||
T Consensus 3 Cp~g-w~~~~~~CY~~~~-~~~tw~~A~~~C~~~~~G~~La~i~s~~e~~~l 52 (134)
T 3gpr_C 3 CLPG-WSAYDQHCYQAFN-EPKTWDEAERFCTEQAKRGHLVSIGSDGEADFV 52 (134)
T ss_dssp CCTT-CEESSSCEEEECS-CCBCSHHHHHHHTTSSSCCEECCCCCHHHHHHH
T ss_pred CCCc-ceeeCCEEEEEeC-CCcCHHHHHHHHHhhCCCceEeeeCCHHHHHHH
Confidence 4555 4567889998876 678999999999999 8999988887766555
No 61
>3m9z_A Killer cell lectin-like receptor subfamily B MEMB; C-type lectin-like domain, domain swapping, disulfide bond, transmembrane protein; 1.70A {Mus musculus} SCOP: d.169.1.0 PDB: 3t3a_A
Probab=74.33 E-value=2 Score=33.42 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=38.8
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
.|.| ...|.+.++.|++ ...++.++.++|.+.||.|+.-.|.+-+-||
T Consensus 6 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 53 (139)
T 3m9z_A 6 CPQD-WLSHRDKCFHVSQ-VSNTWEEGLVDCDGKGATLMLIQDQEELRFL 53 (139)
T ss_dssp CCTT-CEEETTEEEEECS-SCBCHHHHHHHHHHTTCEECCCCCHHHHHHH
T ss_pred CCcc-ceecCCEEEEEEC-CcCCHHHHHHHHHhcCCeEeeeCCHHHHHHH
Confidence 5666 4458899998876 4789999999999999999988877766554
No 62
>2zib_A Type II antifreeze protein; thermal hysteresis, lectin; 1.34A {Brachyopsis rostratus}
Probab=73.73 E-value=1.7 Score=33.98 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=37.5
Q ss_pred ceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 237 TATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 237 ~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
...|.|.|+.|+.. ..++.++.++|.+.||.|+.-.|.+-+-||
T Consensus 14 ~~~~~~~CY~~~~~-~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 57 (133)
T 2zib_A 14 WTLHGQRCFYSEAT-AMTWDLAEANCVNKGGHLASIHSLEEQLYI 57 (133)
T ss_dssp CEEETTEEEEEEEE-EECHHHHHHHHHHTTSEECCCCSHHHHHHH
T ss_pred EEEeCCEEEEEECC-ccCHHHHHHHHHHCCCEECccCCHHHHHHH
Confidence 67799999999874 589999999999999999988877665554
No 63
>3bdw_B NKG2-A/NKG2-B type II integral membrane protein; NK cells, receptor, glycoprotein, lectin, signal-A transmembrane, immune system receptor; 2.50A {Homo sapiens} PDB: 3cdg_K 3cii_H
Probab=72.94 E-value=1.3 Score=33.69 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=39.2
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
.|.| ...|.+.++.|++ ...++.++.++|.+.||.|+.-.+.+-+-||
T Consensus 7 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 54 (120)
T 3bdw_B 7 CPEE-WITYSNSCYYIGK-ERRTWEESLLACTSKNSSLLSIDNEEEMKFL 54 (120)
T ss_dssp SCTT-CEESSSSEEEEEE-EEECHHHHHHHHHHTTSEECCCCCHHHHHHH
T ss_pred CCCC-ceEECCEEEEEEC-CccCHHHHHHHHHhCCCEEceeCCHHHHHHH
Confidence 4555 4457788988876 6789999999999999999998888777665
No 64
>1jwi_A Bitiscetin; domain swapping, C-type lectin, toxin; 2.00A {Bitis arietans} SCOP: d.169.1.1 PDB: 1uex_A
Probab=72.93 E-value=1.7 Score=33.28 Aligned_cols=49 Identities=22% Similarity=0.521 Sum_probs=39.1
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccce
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
.|.| ...|.+.++.|++ ...++.++.++|.+.||.|+.-.+++-+-||.
T Consensus 4 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l~ 52 (131)
T 1jwi_A 4 CLPD-WSSYKGHCYKVFK-KVGTWEDAEKFCVENSGHLASIDSKEEADFVT 52 (131)
T ss_dssp CCTT-SEEETTEEEEEEE-EEECHHHHHHHHHHTTCEECCCCSHHHHHHHH
T ss_pred CCCC-CEEeCCEeEEEEC-CCcCHHHHHHHHHHcCCeECccCCHHHHHHHH
Confidence 4555 3457899999986 56889999999999999999888877665553
No 65
>3gpr_D Rhodocetin subunit delta; disulfide bond, lectin, secreted, toxin, cell adhesion; 3.20A {Calloselasma rhodostoma}
Probab=72.91 E-value=1.3 Score=33.79 Aligned_cols=43 Identities=26% Similarity=0.621 Sum_probs=36.0
Q ss_pred eeeeceEeEEeeCCCCchhhhHhhhhcc--CCCcccCCCccccccc
Q psy4520 238 ATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFI 281 (291)
Q Consensus 238 l~f~g~~~~f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 281 (291)
..|+|.+++|++ ...++.++.++|.+. ||.|+.-.+.+-+-||
T Consensus 6 ~~~~~~CY~~~~-~~~tw~~A~~~C~~~~~g~~La~i~s~~e~~~l 50 (124)
T 3gpr_D 6 SSYNGYCYRVFS-ELKTWEDAESFCYAQHKGSRLASIHSREEEAFV 50 (124)
T ss_dssp CCSSSEEEEEEE-EEEESHHHHHHHHHHSTTCBSCCCCSHHHHHHH
T ss_pred eecCCEeEEEeC-CCcCHHHHHHHHHhcCCCCEEcccCCHHHHHHH
Confidence 346789999887 578999999999999 9999988887766665
No 66
>3ubu_A Agglucetin subunit alpha-1; platelet inhibiting, agkisacucetin, dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding; 1.91A {Deinagkistrodon acutus}
Probab=72.58 E-value=2 Score=32.86 Aligned_cols=49 Identities=29% Similarity=0.607 Sum_probs=39.3
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhcc--CCCcccCCCccccccce
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFIS 282 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 282 (291)
+|.| ...|.+.++.|++ ...++.++.++|.+. ||.|+.-.+++-+-||.
T Consensus 4 Cp~g-w~~~~~~CY~~~~-~~~tw~~A~~~C~~~~~G~~La~i~s~~e~~~l~ 54 (131)
T 3ubu_A 4 CLPG-WSAYDQSCYRVFK-LLKTWDDAEKFCTERPKGGHLVSIESAGERDFVA 54 (131)
T ss_dssp CCTT-CEEETTEEEEEEE-EEECHHHHHHHHHTSTTCCEECCCCSHHHHHHHH
T ss_pred CCcc-CEecCCEeeEEcC-CCcCHHHHHHHHhccCCCceEceeCCHHHHHHHH
Confidence 4555 4568899998886 478999999999999 89999888877666653
No 67
>1oz7_B Echicetin B-chain; platelet aggregation, dimer, toxin; 2.40A {Echis carinatus} SCOP: d.169.1.1
Probab=72.54 E-value=2.1 Score=32.48 Aligned_cols=48 Identities=31% Similarity=0.609 Sum_probs=38.4
Q ss_pred CCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccce
Q psy4520 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFIS 282 (291)
Q Consensus 233 ~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 282 (291)
|.| ...|.|.+++|++ ...++.++.++|.+ .||.|+.-.|++-+-||.
T Consensus 3 p~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~ 52 (123)
T 1oz7_B 3 LPD-WSVYEGYCYKVFK-ERMNWADAEKFCTKQHKDGHLVSFRNSKEVDFVI 52 (123)
T ss_dssp CTT-CEEETTEEEEEEE-EEECHHHHHHHHHHHSTTCEECCCCCSSHHHHHH
T ss_pred CCC-cEEcCCEEEEEEC-CccCHHHHHHHHhccCCCcEECCcCCHHHHHHHH
Confidence 444 4457899999876 57899999999999 999999888887666654
No 68
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=72.15 E-value=10 Score=33.68 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHh----CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccc
Q psy4520 111 LKLVMEAVEHAMYV----YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVN 186 (291)
Q Consensus 111 i~~i~~~~r~~~~~----~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~ls 186 (291)
..+....+|.+... .+-++++.|+=. . +-|. ..+..+.+.|+.++++.++.|++++|.-.
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPt--s-----~LD~-~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-------- 209 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPT--S-----ALDL-YHQQHTLRLLRQLTRQEPLAVCCVLHDLN-------- 209 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCC--S-----SCCH-HHHHHHHHHHHHHHHHSSEEEEEECSCHH--------
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCcc--c-----cCCH-HHHHHHHHHHHHHHHcCCCEEEEEEcCHH--------
Confidence 34566677766552 277899999873 1 1222 44577899999999999999999999432
Q ss_pred cccccccccccCccEEEEEcc
Q psy4520 187 SVFGSAKATQESDNVLIIQQK 207 (291)
Q Consensus 187 DLrgSg~IeQdAD~Vi~L~R~ 207 (291)
.+.+-||.|++++.-
T Consensus 210 ------~~~~~~d~v~vl~~G 224 (266)
T 4g1u_C 210 ------LAALYADRIMLLAQG 224 (266)
T ss_dssp ------HHHHHCSEEEEEETT
T ss_pred ------HHHHhCCEEEEEECC
Confidence 256779999999753
No 69
>2bpd_A Dectin-1; receptor, beta-glucan, fungal recognition, C-type lectin-like domain, CTLD, carbohydrate; 1.5A {Mus musculus} PDB: 2bph_A 2bpe_A 2cl8_A*
Probab=71.59 E-value=1.9 Score=34.00 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=39.0
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
+|.| ...|.+.|+.|++ ...++.++.++|.+.||.|+.-.|.+-+-||
T Consensus 17 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 64 (142)
T 2bpd_A 17 CLPN-WIMHGKSCYLFSF-SGNSWYGSKRHCSQLGAHLLKIDNSKEFEFI 64 (142)
T ss_dssp CCTT-CEEETTEEEEEEE-EEECHHHHHHHHHHTTCEECCCCSHHHHHHH
T ss_pred CCcc-ceecCCEEEEEEC-CCCCHHHHHHHHHHcCCEEeeeCCHHHHHHH
Confidence 4555 5568899999987 5788999999999999999988887755554
No 70
>1tdq_B Aggrecan core protein; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: d.169.1.1
Probab=71.54 E-value=2 Score=32.82 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=39.4
Q ss_pred CCCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 231 DQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 231 ~g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
.+|.| ...|.|.++.|+. ...++.++.++|.+.||.|+.-.+++-+-||
T Consensus 6 ~Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 54 (130)
T 1tdq_B 6 QCEEG-WTKFQGHCYRHFP-DRETWVDAERRCREQQSHLSSIVTPEEQEFV 54 (130)
T ss_dssp CCCTT-CEEETTEEEEEEE-EEECHHHHHHHHHHTTCEECCCCSHHHHHHH
T ss_pred CCCcc-cEEeCCEEEEEEC-CCCCHHHHHHHHHhcCCEEeeeCCHHHHHHH
Confidence 36666 4457899999987 4688999999999999999988877766555
No 71
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=71.38 E-value=1.7 Score=35.73 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=38.3
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
+|.| ...|.|.|+.|++ ...+|.++.++|.+.||.++.-.|.+-+-||
T Consensus 49 Cp~g-w~~~~~~CY~~~~-~~~tw~~A~~~C~~~g~~La~i~s~~e~~~l 96 (182)
T 3kqg_A 49 VSQG-WKYFKGNFYYFSL-IPKTWYSAEQFCVSRNSHLTSVTSESEQEFL 96 (182)
T ss_dssp HTTT-CEEETTEEEEECS-SCBCHHHHHHHHHHTTCEECCCCSHHHHHHH
T ss_pred CCCC-CEEeCCEEEEEEC-CCCCHHHHHHHHHhCCCEEeeeCCHHHHHHH
Confidence 4555 4457789998876 6788999999999999999988877655554
No 72
>1j34_A Coagulation factor IX-binding protein A chain; magnesium ION, calcium ION, GLA domain, protein binding/blood clotting complex; HET: CGU; 1.55A {Trimeresurus flavoviridis} SCOP: d.169.1.1 PDB: 1bj3_A* 1j35_A* 1x2t_A* 1x2w_A 1ixx_A 1y17_A 1wt9_A 1iod_A*
Probab=71.31 E-value=2.1 Score=32.54 Aligned_cols=47 Identities=30% Similarity=0.657 Sum_probs=37.9
Q ss_pred CCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccc
Q psy4520 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFI 281 (291)
Q Consensus 233 ~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 281 (291)
|.| ...|.+.++.|++ ...++.++.++|.+ .||.|+.-.+++-+-||
T Consensus 3 p~g-w~~~~~~Cy~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l 51 (129)
T 1j34_A 3 PSG-WSSYEGHCYKPFK-LYKTWDDAERFCTEQAKGGHLVSIESAGEADFV 51 (129)
T ss_dssp CTT-CEEETTEEEEEEE-EEECHHHHHHHHHHHSTTCEECCCCSHHHHHHH
T ss_pred CCC-cEEeCCEEEEEEC-CCCCHHHHHHHHhccCCCCEECccCCHHHHHHH
Confidence 444 3457799999986 57889999999999 89999998887766655
No 73
>3vpp_A C-type lectin domain family 9 member A; dendritic cell, C-type lectin-like domain, membrane, immune; 1.64A {Homo sapiens}
Probab=70.99 E-value=2.7 Score=32.29 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=39.2
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccce
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
.|.| ...|.|.++.|++. ..++.++.++|.+.||.|+.-.|++-+-||.
T Consensus 4 Cp~g-w~~~~~~CY~~~~~-~~~w~~A~~~C~~~g~~La~i~s~~e~~~l~ 52 (132)
T 3vpp_A 4 CPNN-WIQNRESCYYVSEI-WSIWHTSQENCLKEGSTLLQIESKEEMDFIT 52 (132)
T ss_dssp SCTT-CEEETTEEEEECSS-CBCHHHHHHHHHHTTCEECCCCSHHHHHHHH
T ss_pred CCcc-ceEeCCEEEEEECC-ccCHHHHHHHHHhcCCEEeEECCHHHHHHHH
Confidence 4445 45688999988774 6899999999999999999988877666654
No 74
>1j34_B Coagulation factor IX-binding protein B chain; magnesium ION, calcium ION, GLA domain, protein binding/blood clotting complex; HET: CGU; 1.55A {Trimeresurus flavoviridis} SCOP: d.169.1.1 PDB: 1bj3_B 1ixx_B* 1j35_B* 1x2t_B* 1x2w_B 1wt9_B 1iod_B 1y17_B
Probab=70.97 E-value=2.2 Score=32.40 Aligned_cols=47 Identities=32% Similarity=0.694 Sum_probs=37.9
Q ss_pred CCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccc
Q psy4520 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFI 281 (291)
Q Consensus 233 ~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 281 (291)
|.| ...|.|.++.|++ ...++.++.++|.+ .||.|+.-.+++-+-||
T Consensus 3 p~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l 51 (123)
T 1j34_B 3 PSD-WSSYEGHCYKPFS-EPKNWADAENFCTQQHAGGHLVSFQSSEEADFV 51 (123)
T ss_dssp CTT-SEEETTEEEEEEE-EEECHHHHHHHHHHHSTTCEECCCSSHHHHHHH
T ss_pred CCc-ccccCCEEEEEEC-CCcCHHHHHHHHhccCCCcEEcccCCHHHHHHH
Confidence 444 3457889998887 57899999999999 89999988887766555
No 75
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=70.72 E-value=32 Score=30.77 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+..+.||. .-.+-+++|+|+=. .+ -|. ..+..+.+.|+.++++.++.|++++|.-..
T Consensus 150 QRv~iAra--L~~~P~lLlLDEPt--s~-----LD~-~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~------------- 206 (275)
T 3gfo_A 150 KRVAIAGV--LVMEPKVLILDEPT--AG-----LDP-MGVSEIMKLLVEMQKELGITIIIATHDIDI------------- 206 (275)
T ss_dssp HHHHHHHH--HTTCCSEEEEECTT--TT-----CCH-HHHHHHHHHHHHHHHHHCCEEEEEESCCSS-------------
T ss_pred HHHHHHHH--HHcCCCEEEEECcc--cc-----CCH-HHHHHHHHHHHHHHhhCCCEEEEEecCHHH-------------
Confidence 34455554 35678999999983 11 222 445678889999985559999999995332
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 207 -~~~~~drv~~l~~ 219 (275)
T 3gfo_A 207 -VPLYCDNVFVMKE 219 (275)
T ss_dssp -GGGGCSEEEEEET
T ss_pred -HHHhCCEEEEEEC
Confidence 5577999999964
No 76
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=70.72 E-value=4 Score=36.19 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=43.3
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLII 204 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L 204 (291)
.++++|+||+-|++.. +++..|..+| ++|+||++-.....=..+| .-+|..+--.||.|.-|
T Consensus 100 ~~~dvV~IDEaQFf~~-------------~~v~~l~~la-~~gi~Vi~~GLd~DF~~~~----F~~~~~Ll~~Ad~v~kl 161 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDD-------------EIVSIVEKLS-ADGHRVIVAGLDMDFRGEP----FEPMPKLMAVSEQVTKL 161 (219)
T ss_dssp TTCSEEEECCGGGSCT-------------HHHHHHHHHH-HTTCEEEEEEESBCTTSCB----CTTHHHHHHHCSEEEEE
T ss_pred cCCCEEEEechhcCCH-------------HHHHHHHHHH-HCCCEEEEeecccccccCC----CccHHHHHHhcceEEEe
Confidence 4689999999999631 2577888888 7999999776522211222 33455556678888777
Q ss_pred E
Q psy4520 205 Q 205 (291)
Q Consensus 205 ~ 205 (291)
.
T Consensus 162 ~ 162 (219)
T 3e2i_A 162 Q 162 (219)
T ss_dssp C
T ss_pred e
Confidence 4
No 77
>2afp_A Protein (SEA raven type II antifreeze protein); recombinant SEA raven protein, solution backbone fold, C- type lectin; NMR {Hemitripterus americanus} SCOP: d.169.1.1
Probab=70.70 E-value=1.8 Score=33.11 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=39.0
Q ss_pred CCCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 231 DQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 231 ~g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
..|.| ...|.+.++.|+.. ..++.++.++|.+.||.|+.-.+.+-+-||
T Consensus 6 ~Cp~g-w~~~~~~CY~~~~~-~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 54 (129)
T 2afp_A 6 NCPAG-WQPLGDRCIYYETT-AMTWALAETNCMKLGGHLASIHSQEEHSFI 54 (129)
T ss_dssp SSCSS-SCCCSSSEECCCCS-CCCHHHHHHHHHHHSCEECCCSSSHHHHHH
T ss_pred CCCcC-cEEcCCEEEEEECC-cCCHHHHHHHHHHcCCEECCcCCHHHHHHH
Confidence 46666 44577889888764 599999999999999999988887766555
No 78
>1egg_A Macrophage mannose receptor; C-type lectin, sugar binding protein; 2.30A {Homo sapiens} SCOP: d.169.1.1 PDB: 1egi_A
Probab=70.59 E-value=1.8 Score=33.78 Aligned_cols=50 Identities=26% Similarity=0.456 Sum_probs=39.3
Q ss_pred CCCCC-ceeeeceEeEEeeC---CCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 232 QPPGS-TATYNGKCYIFYNR---RPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~-~l~f~g~~~~f~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
+|.|= ...|.+.++.|+.. ...++.++.++|.+.||.|+.-.+++-+-||
T Consensus 5 Cp~gw~~~~~~~~CY~~~~~~~~~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 58 (147)
T 1egg_A 5 CPEDWGASSRTSLCFKLYAKGKHEKKTWFESRDFCRALGGDLASINNKEEQQTI 58 (147)
T ss_dssp CCTTCEECSSSSCEEEEECSCGGGCBCHHHHHHHHHTTTCEECCCCSHHHHHHH
T ss_pred CCCCCccccCCCEEEEEeccCCccccCHHHHHHHHHHcCCEECccCCHHHHHHH
Confidence 44452 25677899999874 7899999999999999999988777655554
No 79
>1c3a_B Flavocetin-A: beta subunit; C-type lectin-like domains, membrane protein; 2.50A {Trimeresurus flavoviridis} SCOP: d.169.1.1 PDB: 1v4l_B
Probab=70.24 E-value=2.4 Score=32.27 Aligned_cols=48 Identities=29% Similarity=0.639 Sum_probs=38.9
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 281 (291)
.|.| ...|.+.+++|++ ...++.++.++|.+ .||.|+.-.|++-+-||
T Consensus 4 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l 53 (125)
T 1c3a_B 4 CPLG-WSSYDEHCYQVFQ-QKMNWEDAEKFCTQQHKGSHLVSFHSSEEVDFV 53 (125)
T ss_dssp CCTT-CEEETTEEEEEEE-EEECHHHHHHHHHHHSTTCEECCCSSHHHHHHH
T ss_pred CCCc-ceecCCEEEEEEC-CCCCHHHHHHHhhccCCCcEECccCCHHHHHHH
Confidence 5555 4467899999885 57899999999999 99999998888766655
No 80
>1jwi_B Platelet aggregation inducer; domain swapping, C-type lectin, toxin; 2.00A {Bitis arietans} SCOP: d.169.1.1 PDB: 1uex_B
Probab=70.22 E-value=2.2 Score=32.58 Aligned_cols=48 Identities=27% Similarity=0.584 Sum_probs=38.5
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhh--ccCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCR--SRGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 281 (291)
.|.| ...|.|.++.|++. ..++.++.++|. +.||.|+.-.+.+-+-||
T Consensus 4 Cp~g-w~~~~~~CY~~~~~-~~tw~~A~~~C~~~~~g~~La~i~s~~e~~~l 53 (125)
T 1jwi_B 4 CLPD-WSSYKGHCYKVFKV-EKTWADAEKFCKELVNGGHLMSVNSREEGEFI 53 (125)
T ss_dssp CCTT-CEEETTEEEEEEEE-EECHHHHHHHHHHHSTTCEECCCCSHHHHHHH
T ss_pred CCCC-CEecCCEEEEEECC-CcCHHHHHHHhhccCCCceECccCCHHHHHHH
Confidence 4555 45678999999874 689999999999 899999988877666555
No 81
>2qyg_A Ribulose bisphosphate carboxylase-like protein 2; beta-alpha-barrel, unknown function; 3.30A {Rhodopseudomonas palustris}
Probab=69.55 E-value=18 Score=35.30 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=37.7
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNV 135 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyL 135 (291)
+.+..+.++=.+..+|..+-++ +.++++++++++ .+.|...|.||++
T Consensus 240 eai~ra~~eTGe~k~y~~NiT~--~~~eM~~Ra~~a-~e~G~~~vmvd~~ 286 (452)
T 2qyg_A 240 DACRRASAETGVPKIYLANITD--EVDRLTELHDVA-VANGAGALLINAM 286 (452)
T ss_dssp HHHHHHHHHHSSCCEEEEECCC--CTTHHHHHHHHH-HHTTCCEEEEEHH
T ss_pred HHHHHHHHHhCCcceecCcCCC--CHHHHHHHHHHH-HHhCCCeEEEecc
Confidence 4455567777778899888664 789999999986 6679999999998
No 82
>1ykw_A Rubisco-like protein; beta-alpha-barrel, unknown function; 2.00A {Chlorobaculum tepidum} SCOP: c.1.14.1 d.58.9.1 PDB: 1tel_A
Probab=69.44 E-value=20 Score=34.82 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=37.6
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNV 135 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyL 135 (291)
+.+..+.++=.+..+|..+-++ +.++++++++++ .+.|...|.||++
T Consensus 220 eai~~a~~eTGe~k~~~~NiT~--~~~em~~Ra~~a-~e~G~~~~mvd~~ 266 (435)
T 1ykw_A 220 KARRKAEAETGEPKIYLANITD--EVDSLMEKHDVA-VRNGANALLINAL 266 (435)
T ss_dssp HHHHHHHHHHSSCCEEEEECCC--CGGGHHHHHHHH-HHHTCCEEEEEHH
T ss_pred HHHHHHHHhhCCcceeecccCC--CHHHHHHHHHHH-HHcCCCEEEEecc
Confidence 4555567777778899888664 789999999986 5579899999998
No 83
>1ukm_A EMS16 A chain, EMS16 subunit A; domain swapping, C-type lectin, toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP: d.169.1.1 PDB: 1v7p_A*
Probab=69.38 E-value=2.4 Score=32.53 Aligned_cols=48 Identities=25% Similarity=0.563 Sum_probs=38.8
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 281 (291)
+|.| ...|.|.++.|++ ...++.++.++|.+ .||.|+.-.+++-+-||
T Consensus 4 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l 53 (134)
T 1ukm_A 4 CPSD-WTAYDQHCYLAIG-EPQNWYEAERFCTEQAKDGHLVSIQSREEGNFV 53 (134)
T ss_dssp CSTT-CEEETTEEEEEEE-EEECHHHHHHHHHHHSTTCEECCCCSHHHHHHH
T ss_pred CCCc-cEecCCEEEEEEC-CCcCHHHHHHHHhhcCCCcEECccCCHHHHHHH
Confidence 5555 4567899999986 57889999999999 89999988887765554
No 84
>2py2_A Antifreeze protein type II; type II antifreeze protein; 1.70A {Clupea harengus}
Probab=69.33 E-value=2.5 Score=33.04 Aligned_cols=48 Identities=21% Similarity=0.486 Sum_probs=38.2
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
+|.| ...|.+.++.|+.. ..++.++.++|.+.||.|+.-.|.+-+-||
T Consensus 4 Cp~g-w~~~~~~CY~~~~~-~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 51 (136)
T 2py2_A 4 CPTD-WKMFNGRCFLFNPL-QLHWADAQESCMKEGANLASIHSLEESTFV 51 (136)
T ss_dssp CCTT-CEEETTEEEEEEEE-EECHHHHHHHHHTTTCEECCCCSHHHHHHH
T ss_pred CCcC-ceecCCEEEEEECC-CcCHHHHHHHHhhCCCEEeeeCCHHHHHHH
Confidence 4555 44678999998874 589999999999999999988777655554
No 85
>1fvu_B Botrocetin beta chain; VON WILLBRAND factor modulator, C-type lectin, metal- binding, loop exchanged dimer, toxin; 1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_C 1u0n_C 1u0o_B
Probab=69.30 E-value=2.4 Score=32.14 Aligned_cols=48 Identities=31% Similarity=0.693 Sum_probs=38.1
Q ss_pred CCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccce
Q psy4520 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFIS 282 (291)
Q Consensus 233 ~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 282 (291)
|.| ...|.+.++.|++ ...++.++.++|.+ .||.|+.-.+++-+-||.
T Consensus 3 p~g-w~~~~~~Cy~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~ 52 (125)
T 1fvu_B 3 PPD-WSSYEGHCYRFFK-EWMHWDDAEEFCTEQQTGAHLVSFQSKEEADFVR 52 (125)
T ss_dssp STT-CEEETTEEEEEEE-EEECHHHHHHHHHHHSTTCEECCCSSHHHHHHHH
T ss_pred CCc-cEEcCCEEEEEeC-CCCCHHHHHHHHhccCCCcEECccCCHHHHHHHH
Confidence 444 3457889998876 56899999999999 999999888877666553
No 86
>3bx4_A Aggretin alpha chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_A
Probab=69.23 E-value=2.4 Score=32.73 Aligned_cols=48 Identities=23% Similarity=0.495 Sum_probs=39.1
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 281 (291)
+|.| ...|.+.++.|++ ...++.++.++|.+ .||.|+.-.+++-+-||
T Consensus 5 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l 54 (136)
T 3bx4_A 5 CDFG-WSPYDQHCYQAFN-EQKTWDEAEKFCRAQENGAHLASIESNGEADFV 54 (136)
T ss_dssp CCTT-CEEETTEEEEEEE-EEECHHHHHHHHHTSTTTCEECCCCSHHHHHHH
T ss_pred CCCC-CEecCCEEEEEEC-CCcCHHHHHHHHhccCCCcEEcccCCHHHHHHH
Confidence 5556 4457899999986 57899999999999 89999988887766655
No 87
>1fvu_A Botrocetin alpha chain; VON WILLBRAND factor modulator, C-type lectin, metal- binding, loop exchanged dimer, toxin; 1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_B 1u0n_B 1u0o_A
Probab=68.75 E-value=2.7 Score=32.24 Aligned_cols=47 Identities=36% Similarity=0.805 Sum_probs=37.7
Q ss_pred CCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCcc-ccccc
Q psy4520 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPA-LQGFI 281 (291)
Q Consensus 233 ~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~ 281 (291)
|.| ...|+|.++.|++ ...++.++.++|.+ .||.|+.-.+++ -+-||
T Consensus 3 p~g-w~~~~~~CY~~~~-~~~tw~~A~~~C~~~~~g~~La~i~s~~~e~~~l 52 (133)
T 1fvu_A 3 PSG-WSSYEGNCYKFFQ-QKMNWADAERFCSEQAKGGHLVSIKIYSKEKDFV 52 (133)
T ss_dssp CTT-CEEETTEEEEEEE-EEECHHHHHHHHHHHSTTCEECCCCTTSTHHHHH
T ss_pred CCC-cEEcCCeeEEEEC-CCcCHHHHHHHHhccCCCcEEeeecChHHHHHHH
Confidence 444 3457899999886 56899999999999 899999988888 55554
No 88
>2kv3_A Regenerating islet-derived protein 4; GISP, C-type lectin, REG IV, disulfide bond, glycoPro lectin, secreted, sugar binding protein; NMR {Homo sapiens}
Probab=68.71 E-value=2.5 Score=32.26 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=38.0
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhcc--CCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 281 (291)
+|.| ...|.+.++.|++ ...++.++.++|.+. ||.|+.-.|.+-+-||
T Consensus 3 Cp~g-w~~~~~~CY~~~~-~~~tw~~A~~~C~~~~~g~~La~i~s~~e~~~l 52 (131)
T 2kv3_A 3 CAPG-WFYHKSNCYGYFR-KLRNWSDAELECQSYGNGAHLASILSLKEASTI 52 (131)
T ss_dssp SCTT-CCEETTEEEEEEE-EEECHHHHHHHHHTTSSSCEECCCSSHHHHHHH
T ss_pred CCcc-cEEcCCEeEEEEC-CCCCHHHHHHHHhccCCCceEeeeCCHHHHHHH
Confidence 3444 4457899998886 468999999999999 9999988887665554
No 89
>1sl6_A C-type lectin DC-signr; sugar binding protein; HET: GAL NDG FUC; 2.25A {Homo sapiens} SCOP: d.169.1.1 PDB: 1xar_A
Probab=68.36 E-value=3.3 Score=34.43 Aligned_cols=50 Identities=26% Similarity=0.464 Sum_probs=40.3
Q ss_pred CCCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccce
Q psy4520 231 DQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282 (291)
Q Consensus 231 ~g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
.+|.| ...|.|.++.|++ ...++.++.++|.+.||.++.-.+++-+-||.
T Consensus 52 ~Cp~g-w~~~~~~CY~~~~-~~~tw~~A~~~C~~~g~~La~i~s~~e~~fl~ 101 (184)
T 1sl6_A 52 HCPKD-WTFFQGNCYFMSN-SQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQ 101 (184)
T ss_dssp BCCTT-CEEETTEEEEECS-SCBCHHHHHHHHHTTTCEECCCCSHHHHHHHH
T ss_pred CCCCC-cEEECCEEEEEEC-CCCCHHHHHHHHHhcCCEEEEeCCHHHHHHHH
Confidence 45666 4567899998876 56899999999999999999888877666654
No 90
>3c22_A C-type lectin domain family 4 member K; coiled coil, glycoprotein, membrane, signal-anchor, transmembrane, immune system, sugar binding protein; 1.50A {Homo sapiens} PDB: 3p5g_A* 3p5d_A* 3p5f_A* 3p5e_A* 3p5h_A* 3p5i_A* 3p7g_A* 3p7f_A* 3p7h_A* 3bc7_A* 3bbs_A* 3bc6_A*
Probab=67.83 E-value=3.2 Score=33.13 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=38.3
Q ss_pred CCCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 231 DQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 231 ~g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
.+|.| ...|.|.++.|++ ...++.++.++|.+.||.|+.-.+.+-+-||
T Consensus 22 ~Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 70 (156)
T 3c22_A 22 VVSQG-WKYFKGNFYYFSL-IPKTWYSAEQFCVSRNSHLTSVTSESEQEFL 70 (156)
T ss_dssp --CCC-CEEETTEEEEECS-SCBCHHHHHHHHHHTTCEECCCCSHHHHHHH
T ss_pred cCCCC-CEEcCCEEEEEEC-CCCCHHHHHHHHHhCCCEEeecCCHHHHHHH
Confidence 46666 4568899998874 6889999999999999999988777655554
No 91
>1oz7_A Echicetin A-chain; platelet aggregation, dimer, toxin; 2.40A {Echis carinatus} SCOP: d.169.1.1
Probab=67.71 E-value=2.6 Score=32.22 Aligned_cols=47 Identities=21% Similarity=0.584 Sum_probs=37.7
Q ss_pred CCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccc
Q psy4520 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFI 281 (291)
Q Consensus 233 ~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 281 (291)
|.| ...|.+.++.|++ ...++.++.++|.+ .||.|+.-.|.+-+-||
T Consensus 3 p~g-w~~~~~~Cy~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l 51 (131)
T 1oz7_A 3 PPG-WSSNGVYCYMLFK-EPKTWDEAEKFCNKQGKDGHLLSIESKKEEILV 51 (131)
T ss_dssp CTT-CEEETTEEEEEEE-EEECHHHHHHHHHHHSTTCEECCCCSHHHHHHH
T ss_pred CCC-cEEeCCEEEEEEC-CCCCHHHHHHHHHhcCCCCEECccCCHHHHHHH
Confidence 444 3457789999987 57899999999999 89999988887766655
No 92
>1qdd_A Lithostathine; pancreatic stone inhibitor, metal binding protein; HET: SIA NDG GAL; 1.30A {Homo sapiens} SCOP: d.169.1.1 PDB: 1lit_A
Probab=67.56 E-value=2.7 Score=32.67 Aligned_cols=49 Identities=29% Similarity=0.544 Sum_probs=39.5
Q ss_pred CCCCCCceeeeceEeEEeeCCCCchhhhHhhhhcc-CCCcccCCCccccccc
Q psy4520 231 DQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR-GGSLVDESNPALQGFI 281 (291)
Q Consensus 231 ~g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 281 (291)
.+|.| ...|.+.++.|++ ...++.++.++|.+. ||.|+.-.|.+-+-||
T Consensus 13 ~Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~~gg~La~i~s~~e~~~l 62 (144)
T 1qdd_A 13 SCPEG-TNAYRSYCYYFNE-DRETWVDADLYCQNMNSGNLVSVLTQAEGAFV 62 (144)
T ss_dssp SCCTT-CEEETTEEEEEEE-EEECHHHHHHHHHHTTSCEECCCCSHHHHHHH
T ss_pred CCCCC-ceecCCEeEEEeC-CCcCHHHHHHHhhccCCceECccCCHHHHHHH
Confidence 46766 4568899999987 578999999999998 9999987777655554
No 93
>2oem_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; rubisco-like protein, isomerase; HET: KCX 1AE; 1.70A {Geobacillus kaustophilus} PDB: 2oel_A* 2oek_A* 2oej_A
Probab=66.87 E-value=36 Score=32.79 Aligned_cols=47 Identities=9% Similarity=0.125 Sum_probs=37.7
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNV 135 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyL 135 (291)
+.+..+.++=.+..+|..+-++ +.++++++++++ .+.|...+.||++
T Consensus 195 eai~ra~~eTGe~k~~~~NiT~--~~~em~~Ra~~a-~e~G~~~~mvd~~ 241 (413)
T 2oem_A 195 AALQEVYEQTGKRTLYAVNLTG--KTFALKDKAKRA-AELGADVLLFNVF 241 (413)
T ss_dssp HHHHHHHHHHSCCCEEEEECCS--CGGGHHHHHHHH-HHTTCSEEEECGG
T ss_pred HHHHHHHHHHCCcceeeCcCCC--CHHHHHHHHHHH-HHhCCCeEEEeee
Confidence 4455567777777899888664 789999999997 5569999999998
No 94
>2e3x_B Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}
Probab=66.74 E-value=3.5 Score=31.64 Aligned_cols=49 Identities=22% Similarity=0.469 Sum_probs=39.0
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccce
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFIS 282 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 282 (291)
.|.| ...|.+.++.|+. ...++.++.++|.+ .||.|+.-.|.+-+-||.
T Consensus 3 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~ 53 (134)
T 2e3x_B 3 CPPD-SSLYRYFCYRVFK-EHKTWEAAERFCMEHPNNGHLVSIESMEEAEFVA 53 (134)
T ss_dssp CTTT-SEEETTEEEEEEE-EEEEHHHHHHHHTSTTTTCCBCCCCSHHHHHHHH
T ss_pred CCCC-CEEeCCEeeEEeC-CCcCHHHHHHHHhccCCCcEEcccCCHHHHHHHH
Confidence 4555 3457889998876 57899999999999 899999988877666553
No 95
>3hup_A Early activation antigen CD69; C-type lectin-like domain, disulfide bond, glycoprotein, LEC membrane, phosphoprotein, signal-anchor, transmembrane; 1.37A {Homo sapiens} SCOP: d.169.1.1 PDB: 1e87_A 1e8i_A 3cck_A
Probab=66.65 E-value=3.1 Score=32.12 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=39.2
Q ss_pred CCCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 231 DQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 231 ~g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
..|.| ...|.+.++.|++ ...++.++.++|.+.||.|+.-.|++-+-||
T Consensus 15 ~Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 63 (130)
T 3hup_A 15 SCSED-WVGYQRKCYFIST-VKRSWTSAQNACSEHGATLAVIDSEKDMNFL 63 (130)
T ss_dssp CCCTT-CEEETTEEEEECS-SCBCHHHHHHHHHTTTCEECCCCSHHHHHHH
T ss_pred CCChh-heecCCEEEEEEC-CccCHHHHHHHHHhcCCEEeecCCHHHHHHH
Confidence 35655 4568899998865 5889999999999999999988877665554
No 96
>2xr6_A CD209 antigen; sugar binding protein, carbohydrate binding, mannose; HET: MAN 07B; 1.35A {Homo sapiens} PDB: 1sl4_A* 2it6_A* 1k9i_A* 2xr5_A* 1sl5_A* 2it5_A* 1xph_A 1k9j_A*
Probab=66.25 E-value=3.6 Score=33.55 Aligned_cols=50 Identities=28% Similarity=0.490 Sum_probs=40.0
Q ss_pred CCCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccce
Q psy4520 231 DQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282 (291)
Q Consensus 231 ~g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
.+|.| ...|.|.++.|++ ...++.++.++|.+.||.|+.-.+.+-+-||.
T Consensus 21 ~Cp~g-w~~~~~~CY~~~~-~~~tw~~A~~~C~~~g~~La~i~s~~e~~fl~ 70 (170)
T 2xr6_A 21 PCPWE-WTFFQGNCYFMSN-SQRNWHDSITACKEVGAQLVVIKSAEEQNFLQ 70 (170)
T ss_dssp CCCTT-CEEETTEEEEECS-SCBCHHHHHHHHHHTTCEECCCCSHHHHHHHH
T ss_pred CCCcC-cEEeCCEEEEEEC-CcCCHHHHHHHHHhCCCEEeeeCCHHHHHHHH
Confidence 35666 4568899998876 46899999999999999999888877665553
No 97
>2c6u_A CLEC1B protein; lectin, rhodocytin, aggretin, C-type lectin-like, platelets, thrombosis; 1.6A {Homo sapiens}
Probab=66.23 E-value=2.9 Score=31.85 Aligned_cols=48 Identities=19% Similarity=0.461 Sum_probs=37.3
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
.|.| ...|.+.+++|+.. ..++.++.++|.+.||.|+.-.+.+-+-||
T Consensus 3 Cp~g-w~~~~~~CY~~~~~-~~~w~~A~~~C~~~g~~L~~i~s~~e~~~l 50 (122)
T 2c6u_A 3 CDTN-WRYYGDSCYGFFRH-NLTWEESKQYCTDMNATLLKIDNRNIVEYI 50 (122)
T ss_dssp SCTT-EEEETTEEEEEEEE-EECHHHHHHHHHHTTCEECCCCSHHHHHHH
T ss_pred CCcc-ceEeCCEEEEEECC-cCCHHHHHHHHHhCCCeEeeECCHHHHHHH
Confidence 3444 44578899998774 589999999999999999987777655554
No 98
>1sb2_B Rhodocetin beta subunit; C-type lectin, domain swapping, toxin; 1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB: 3gpr_B
Probab=66.14 E-value=3 Score=31.97 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=39.2
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccce
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFIS 282 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 282 (291)
.|.| ...|.+.++.|++ ...++.++.++|.+ .||.|+.-.+.+-+-||.
T Consensus 4 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~ 54 (129)
T 1sb2_B 4 CPTT-WSASKLYCYKPFK-EKKTWIEAERFCAKQAENGHLVSIGSAAEADFLD 54 (129)
T ss_dssp CCTT-CEECSSEEEEEEE-EEECHHHHHHHHHHHSTTCEECCCCSHHHHHHHH
T ss_pred CCCC-CEEeCCEeEEEEC-CCcCHHHHHHHHhhcCCCceECccCCHHHHHHHH
Confidence 5555 3457899999986 57899999999999 999999888877666553
No 99
>1ukm_B EMS16 B chain, EMS16 subunit B; domain swapping, C-type lectin, toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP: d.169.1.1 PDB: 1v7p_B*
Probab=65.84 E-value=3 Score=31.81 Aligned_cols=43 Identities=16% Similarity=0.509 Sum_probs=35.4
Q ss_pred eeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccc
Q psy4520 238 ATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFI 281 (291)
Q Consensus 238 l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 281 (291)
..|.+.++.|++ ...++.++.++|.+ .||.|+.-.|++-+-||
T Consensus 6 ~~~~~~CY~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l 50 (128)
T 1ukm_B 6 SSFDQHCYKVFE-PVKNWTEAEEICMQQHKGSRLASIHSSEEEAFV 50 (128)
T ss_dssp EEETTEEEEEEE-EEECHHHHHHHHHHHSTTCEECCCCSHHHHHHH
T ss_pred EecCCEeEEEEC-CccCHHHHHHHHhccCCccEEcccCCHHHHHHH
Confidence 457789999886 57799999999999 89999988877655554
No 100
>1sb2_A Rhodocetin alpha subunit; C-type lectin, domain swapping, toxin; 1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB: 3gpr_A
Probab=65.73 E-value=3.2 Score=31.69 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=37.2
Q ss_pred CCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccc
Q psy4520 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFI 281 (291)
Q Consensus 233 ~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 281 (291)
|.| ...|.+.++.|++ ...++.++.++|.+ .||.|+.-.|.+-+-||
T Consensus 3 p~g-w~~~~~~Cy~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l 51 (133)
T 1sb2_A 3 PDG-WSSTKSYCYRPFK-EKKTWEEAERFCTEQEKEAHLVSMENRLEAVFV 51 (133)
T ss_dssp CTT-CEECSSEEEEEEE-EEECHHHHHHHHHTSSSCCEECCCSSHHHHHHH
T ss_pred CCC-cEEcCCEeEEEEC-CcCCHHHHHHHHhhhCCCcEEeeECCHHHHHHH
Confidence 444 3457789999877 56899999999999 89999988877665554
No 101
>3lqy_A Putative isochorismatase hydrolase; structural genomics, PSI-2, PROT structure initiative, midwest center for structural genomic; 1.75A {Oleispira antarctica} SCOP: c.33.1.0
Probab=65.05 E-value=13 Score=31.07 Aligned_cols=49 Identities=16% Similarity=-0.013 Sum_probs=31.8
Q ss_pred CcEEEEeccccccC---CCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 127 TGHVIIDNVQFMLG---LSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 127 v~lviIDyLqlm~~---~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.-+||||.-+-... .+.-.......+-.-+..|-..|++.++||+.+.|
T Consensus 8 ~aLlvID~Q~~f~~~~~~g~l~~~~~~~~i~~i~~l~~~ar~~g~pVi~t~~ 59 (190)
T 3lqy_A 8 TALLLIDFQNDYFSTYNGAKNPLVGTEAAAEQGAKLLAKFRQQGLPVVHVRH 59 (190)
T ss_dssp EEEEEECCBGGGCTTSTTCSSCCBTHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEEcCchhhhCcCCCCccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 45899998865543 22111223344444556666778999999999988
No 102
>1c3a_A Flavocetin-A: alpha subunit; C-type lectin-like domains, membrane protein; 2.50A {Trimeresurus flavoviridis} SCOP: d.169.1.1 PDB: 1v4l_A
Probab=65.05 E-value=3.2 Score=31.91 Aligned_cols=48 Identities=27% Similarity=0.601 Sum_probs=38.7
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 281 (291)
.|.| ...|.+.++.|+. ...++.++.++|.+ .||.|+.-.+++-+-||
T Consensus 4 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l 53 (135)
T 1c3a_A 4 CIPG-WSAYDRYCYQAFS-KPKNWEDAESFCEEGVKTSHLVSIESSGEGDFV 53 (135)
T ss_dssp CCTT-CEEETTEEEEEEE-EEECHHHHHHHHHHHSTTCEECCCCSHHHHHHH
T ss_pred CCCc-CEecCCeeEEEeC-CCcCHHHHHHHHhhcCCCCEECeeCCHHHHHHH
Confidence 4555 3458899999986 57899999999999 99999988887766554
No 103
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=64.27 E-value=58 Score=28.56 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
.+..+|. .-.+-+++++|+-. .+ -| ......+.+.|+.++++ +..|++++|.-..
T Consensus 146 Rv~lAra--L~~~p~lllLDEPt--s~-----LD-~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~-------------- 200 (266)
T 2yz2_A 146 RVAIASV--IVHEPDILILDEPL--VG-----LD-REGKTDLLRIVEKWKTL-GKTVILISHDIET-------------- 200 (266)
T ss_dssp HHHHHHH--HTTCCSEEEEESTT--TT-----CC-HHHHHHHHHHHHHHHHT-TCEEEEECSCCTT--------------
T ss_pred HHHHHHH--HHcCCCEEEEcCcc--cc-----CC-HHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH--------------
Confidence 3344443 45678999999983 11 22 24456788889999888 9999999995432
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 201 ~~~~~d~v~~l~~ 213 (266)
T 2yz2_A 201 VINHVDRVVVLEK 213 (266)
T ss_dssp TGGGCSEEEEEET
T ss_pred HHHhCCEEEEEEC
Confidence 4556899999964
No 104
>1wk1_A Hypothetical protein YK1067A12; lectin C-type domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Caenorhabditis elegans} SCOP: d.169.1.1
Probab=64.19 E-value=1.2 Score=35.37 Aligned_cols=41 Identities=22% Similarity=0.395 Sum_probs=34.4
Q ss_pred eeceEeEEeeCCC---CchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 240 YNGKCYIFYNRRP---MNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 240 f~g~~~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
|.|.|+.|+. .. .++.++.++|.+.||.|+.-.|.+-+-||
T Consensus 3 ~~~~CY~~~~-~~~~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 46 (150)
T 1wk1_A 3 SGSSGVKFLT-VNDDILSMPQARNFCASAGGYLADDLGDDKNNFY 46 (150)
T ss_dssp CSSCCCCSSS-CCSSCBCHHHHHHHHHHHTCEECCCCSHHHHHHH
T ss_pred cCCEEEEEEe-cCCCccCHHHHHHHHHhCCCEEeeeCCHHHHHHH
Confidence 5688888886 45 89999999999999999988887766555
No 105
>1umr_C Convulxin beta, CVX beta; lectin, C-type lectin, platelet, sugar-binding protein, activator, snake venom; 2.40A {Crotalus durissus terrificus} SCOP: d.169.1.1 PDB: 1uos_B
Probab=63.96 E-value=3.8 Score=31.09 Aligned_cols=49 Identities=24% Similarity=0.513 Sum_probs=38.8
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccce
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFIS 282 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 282 (291)
.|.| ...|.+.++.|++ ...++.++.++|.+ .||.|+.-.+++-+-||.
T Consensus 4 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~ 54 (125)
T 1umr_C 4 CPSH-WSSYDRYCYKVFK-QEMTWADAEKFCTQQHTGSHLVSFHSTEEVDFVV 54 (125)
T ss_dssp CCTT-CEEETTEEEEEEE-EEECHHHHHHHHHHHSTTCEECCCSSHHHHHHHH
T ss_pred CCCC-CEEcCCEeEEEEC-CCcCHHHHHHHHhccCCcceECccCCHHHHHHHH
Confidence 4555 3457889998876 56899999999999 899999888877665553
No 106
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=63.75 E-value=44 Score=32.79 Aligned_cols=73 Identities=10% Similarity=-0.069 Sum_probs=50.8
Q ss_pred HHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceE
Q psy4520 91 YSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHV 170 (291)
Q Consensus 91 a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpV 170 (291)
..+.-..+|.=|....-..+.+++.+.++.+.++.+|+.||+=..++ . +. .-+++. ++.+++||
T Consensus 37 ~l~~~~~l~~~vv~~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TF----s----~a----~~~i~~----l~~l~~Pv 100 (500)
T 4f2d_A 37 ALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTF----S----PA----KMWING----LTMLNKPL 100 (500)
T ss_dssp HHHHHTCCSSEEEECCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSC----C----CT----HHHHHH----HHHCCSCE
T ss_pred HhccccCCCeEEEecCcCCCHHHHHHHHHHhccccCCcEEEEeCCcC----c----cH----HHHHHH----HHhcCCCE
Confidence 33444568888888777789999999999987888999999765554 2 11 113333 35689999
Q ss_pred EEEe-c-cCCc
Q psy4520 171 TLVI-H-PRKE 179 (291)
Q Consensus 171 ilvs-h-pRk~ 179 (291)
+++. | ++..
T Consensus 101 L~~~~q~~~~i 111 (500)
T 4f2d_A 101 LQFHTQFNAAL 111 (500)
T ss_dssp EEEECCSCSSC
T ss_pred EEEeCCCCCCC
Confidence 9886 5 3443
No 107
>1fm5_A Early activation antigen CD69; C-type lectin-like domain, natural killer cell receptor, lectin, C-type lectin, immune system; 2.27A {Homo sapiens} SCOP: d.169.1.1
Probab=63.54 E-value=4.3 Score=34.39 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=39.3
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
+|.| ...|.+.++.|++ ...++.++.++|.+.||.++.-.|.+-+-||
T Consensus 85 Cp~g-W~~~~~~CY~~~~-~~~tw~~A~~~C~~~g~~La~i~s~~e~~fl 132 (199)
T 1fm5_A 85 CSED-WVGYQRKCYFIST-VKRSWTSAQNACSEHGATLAVIDSEKDMNFL 132 (199)
T ss_dssp CCTT-SEEETTEEEEECS-SCBCHHHHHHHHHHTTCEECCCCSHHHHHHH
T ss_pred CCCC-cEEECCEEEEEeC-CccCHHHHHHHHhhcCCEEEecCCHHHHHHH
Confidence 5555 4568899998886 6889999999999999999988877665555
No 108
>1uv0_A Pancreatitis-associated protein 1; lectin, C-type, secreted, inflammatory response, acute phase; 1.78A {Homo sapiens} SCOP: d.169.1.1 PDB: 2go0_A
Probab=63.35 E-value=4 Score=31.86 Aligned_cols=50 Identities=30% Similarity=0.593 Sum_probs=40.1
Q ss_pred CCCCCCceeeeceEeEEeeCCCCchhhhHhhhhcc-CCCcccCCCccccccce
Q psy4520 231 DQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR-GGSLVDESNPALQGFIS 282 (291)
Q Consensus 231 ~g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 282 (291)
.+|.| ...|.+.++.|+.. ..++.++.++|.+. ||.|+.-.+.+-+-||.
T Consensus 13 ~Cp~g-w~~~~~~CY~~~~~-~~~w~~A~~~C~~~~g~~La~i~s~~e~~~l~ 63 (149)
T 1uv0_A 13 RCPKG-SKAYGSHCYALFLS-PKSWTDADLACQKRPSGNLVSVLSGAEGSFVS 63 (149)
T ss_dssp CCCTT-CEEETTEEEEEEEE-EECHHHHHHHHTTSTTCEECCCCSHHHHHHHH
T ss_pred CCCcc-ccccCCEEEEEECC-CCCHHHHHHHhhcCCCccEeEeCCHHHHHHHH
Confidence 46666 45688999999874 78999999999998 99999888877665553
No 109
>1umr_A Convulxin alpha, CVX alpha; lectin, C-type lectin, platelet, sugar-binding protein, activator, snake venom; 2.40A {Crotalus durissus terrificus} SCOP: d.169.1.1 PDB: 1uos_A
Probab=62.87 E-value=3.6 Score=31.67 Aligned_cols=49 Identities=29% Similarity=0.572 Sum_probs=38.9
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccce
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFIS 282 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 282 (291)
.|.| ...|.+.++.|++ ...++.++.++|.+ .||.|+.-.+++-+-||.
T Consensus 4 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~ 54 (135)
T 1umr_A 4 CPSD-WYYYDQHCYRIFN-EEMNWEDAEWFCTKQAKGAHLVSIKSAKEADFVA 54 (135)
T ss_dssp SCTT-CEEETTEEEEEEE-EEECHHHHHHHHHHHSTTCEECCCCSHHHHHHHH
T ss_pred CCCC-CEEcCCEeEEEEC-CCCCHHHHHHHHHccCCCceECccCCHHHHHHHH
Confidence 4555 4457899999887 47899999999999 999999888877665553
No 110
>1jzn_A Galactose-specific lectin; C-type lectin, protein-disaccharide complex, sugar binding P; HET: BGC GAL; 2.20A {Crotalus atrox} SCOP: d.169.1.1 PDB: 1muq_A*
Probab=62.12 E-value=3.1 Score=31.81 Aligned_cols=48 Identities=27% Similarity=0.362 Sum_probs=38.1
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 281 (291)
+|.| ...|.+.++.|++ ...++.++.++|.+ .||.|+.-.+++-+-||
T Consensus 3 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l 52 (135)
T 1jzn_A 3 CPLD-WLPMNGLCYKIFN-QLKTWEDAEMFCRKYKPGCHLASFHRYGESLEI 52 (135)
T ss_dssp SCTT-SEEETTEEEEEEE-EEECHHHHHHHHHHHSSSEEECCCCSHHHHHHH
T ss_pred CCCC-ceeeCCEEEEEEC-CccCHHHHHHHHhccCCCCEECccCCHHHHHHH
Confidence 4555 3457899999886 57899999999999 79999988887666554
No 111
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_B
Probab=61.58 E-value=4 Score=31.97 Aligned_cols=49 Identities=31% Similarity=0.634 Sum_probs=39.5
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccce
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFIS 282 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 282 (291)
+|.| ...|++.++.|++ ...++.++.++|.+ .||.++.-.|++-+-||.
T Consensus 25 Cp~g-w~~~~~~CY~~~~-~~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l~ 75 (146)
T 3bx4_B 25 CPSG-WSSYEGHCYKPFN-EPKNWADAERFCKLQPKHSHLVSFQSAEEADFVV 75 (146)
T ss_dssp CCTT-CEEETTEEEEEEE-EEECHHHHHHHHHHSSSCCEECCCSSHHHHHHHH
T ss_pred CCcC-cEeeCCEEEEEEC-CCcCHHHHHHHHhccCCCceEeccCCHHHHHHHH
Confidence 5666 4568899999986 46899999999999 799999888877666553
No 112
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=61.36 E-value=33 Score=32.37 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+....||. .-.+-++++.|+=. . +-|. ..+..+..-|+.++++.++.|++++|.-..
T Consensus 170 QRVaIArA--L~~~P~lLLlDEPT--s-----~LD~-~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~------------- 226 (366)
T 3tui_C 170 QRVAIARA--LASNPKVLLCDQAT--S-----ALDP-ATTRSILELLKDINRRLGLTILLITHEMDV------------- 226 (366)
T ss_dssp HHHHHHHH--TTTCCSEEEEESTT--T-----TSCH-HHHHHHHHHHHHHHHHSCCEEEEEESCHHH-------------
T ss_pred HHHHHHHH--HhcCCCEEEEECCC--c-----cCCH-HHHHHHHHHHHHHHHhCCCEEEEEecCHHH-------------
Confidence 34455554 34678999999983 1 1222 446778999999999999999999995332
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+.+-||.|++++.
T Consensus 227 -~~~~aDrv~vl~~ 239 (366)
T 3tui_C 227 -VKRICDCVAVISN 239 (366)
T ss_dssp -HHHHCSEEEEEET
T ss_pred -HHHhCCEEEEEEC
Confidence 5577899999875
No 113
>1tn3_A Tetranectin; plasminogen binding, kringle 4, C-type lectin, carbohydrate recognition domain; 2.00A {Homo sapiens} SCOP: d.169.1.1 PDB: 1rjh_A 3l9j_C
Probab=61.17 E-value=2.6 Score=32.45 Aligned_cols=47 Identities=19% Similarity=0.411 Sum_probs=36.8
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
+|.|-. |.+.++.|++ ...++.++.++|.+.||.|+.-.|++-+-||
T Consensus 6 Cp~gw~--~~~~CY~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 52 (137)
T 1tn3_A 6 CLKGTK--VHMKCFLAFT-QTKTFHEASEDCISRGGTLSTPQTGSENDAL 52 (137)
T ss_dssp EEECSS--SSEEEEEEEE-EEECHHHHHHHHHHTTCEECCCCSHHHHHHH
T ss_pred CCCCeE--ECCEEEEEeC-CCCCHHHHHHHHHhcCCEEcccCCHHHHHHH
Confidence 455632 6788998886 4688999999999999999987777655444
No 114
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440}
Probab=60.92 E-value=17 Score=30.89 Aligned_cols=49 Identities=20% Similarity=0.112 Sum_probs=31.8
Q ss_pred CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 127 TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.-+||||.-+-... +.........+-.-+..|-..|+..++||+.+.|.
T Consensus 24 tALlvID~Q~~f~~-g~l~~~~~~~~i~~i~~l~~~ar~~g~pVi~t~~~ 72 (197)
T 4h17_A 24 ASLIIIDAQKEYLS-GPLKLSGMDEAVANIARLLDAARKSGRPIIHVRHL 72 (197)
T ss_dssp EEEEEECCBGGGGS-STTCCTTHHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEEcccchhhC-CccCCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 45999998765544 21112233344444556667889999999999883
No 115
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A*
Probab=60.62 E-value=11 Score=32.82 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=31.4
Q ss_pred CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 127 TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.-+||||-=+-..............+-.-+..|-..|++.|+||+.+.|.
T Consensus 29 tALlVIDmQ~~F~~~~~~~~~~~~~vv~~i~~Li~~ar~~g~pVi~t~~~ 78 (223)
T 3tg2_A 29 AVLLIHNMQEYFVHYFDSQAEPIPSLIKHIQQLKAHAKQAGIPVVYTAQP 78 (223)
T ss_dssp EEEEEECCBHHHHTTBCTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred eEEEEEcCchhhhCccccccccHHHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 45999996443333221112223334445677888899999999999883
No 116
>3g8l_A Lectin-related NK cell receptor LY49L1; natural killer cell receptor, immune system; 2.50A {Mus musculus}
Probab=60.30 E-value=3.6 Score=34.56 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=37.2
Q ss_pred ceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 237 TATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 237 ~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
...|.+.|+.|+. ...++.++.++|.+.||.++.-.|++-+-||
T Consensus 71 W~~~~~~CY~~~~-~~~tw~~A~~~C~~~g~~LasI~s~~e~~fl 114 (190)
T 3g8l_A 71 WFCYGIKCYYFVM-DRKTWSGCKQTCQISSLSLLKIDNEDELKFL 114 (190)
T ss_dssp EEEEETEEEEEEE-EEECHHHHHHHHHHTTCEECCCCSHHHHHHH
T ss_pred cEEECCEEEEEEc-ccCCHHHHHHHHHhCCCEEeeeCCHHHHHHH
Confidence 4568889998886 5688999999999999999998888766665
No 117
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=60.21 E-value=3.4 Score=32.65 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=35.9
Q ss_pred ceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 237 TATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 237 ~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
.+.|.+.|+.|.+ ...++.++.++|.+.||.++.-.|++-+-||
T Consensus 31 ~~~~~~~Cy~~~~-~~~tw~~A~~~C~~~g~~La~i~s~~e~~~l 74 (148)
T 3pbf_A 31 MLSVGDKVFSTNG-QSVNFDTIKEMCTRAGGNIAVPRTPEENEAI 74 (148)
T ss_dssp CEEETTEEEEEEE-EEECHHHHHHHHHHTTCEECCCCSHHHHHHH
T ss_pred ceeeCCEEEEEcC-CccCHHHHHHHHhhcCCEEeeeCCHHHHHHH
Confidence 3567799998875 5678999999999999999988877766554
No 118
>2h2t_B Low affinity immunoglobulin epsilon FC receptor ( IGE receptor) (FC-epsilon-RII)...; C-type lectin, calcium-bound, lectin domain; 1.30A {Homo sapiens} PDB: 2h2r_A 1t8c_A 1t8d_A
Probab=59.57 E-value=3.5 Score=33.92 Aligned_cols=49 Identities=24% Similarity=0.409 Sum_probs=39.7
Q ss_pred CCCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 231 DQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 231 ~g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
.+|.| ...|.+.+++|++ ...++.++.++|.+.||.|+.-.|.+-+-||
T Consensus 16 ~Cp~g-w~~~~~~CY~~~~-~~~tw~~A~~~C~~~g~~La~i~s~~e~~fl 64 (175)
T 2h2t_B 16 TCPEK-WINFQRKCYYFGK-GTKQWVHARYACDDMEGQLVSIHSPEEQDFL 64 (175)
T ss_dssp BCCTT-CEEETTEEEEEEE-EEECHHHHHHHHHHTTCEECCCCSHHHHHHH
T ss_pred CCCcc-cEEeCCEEEEEeC-CccCHHHHHHHHhhcCCEEeecCCHHHHHHH
Confidence 35666 4568899999886 4689999999999999999988887766555
No 119
>1hup_A Mannose-binding protein; alpha-helical coiled-coil, C-type lectin; 2.50A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=59.30 E-value=3.4 Score=32.54 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=35.3
Q ss_pred eeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 238 ATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 238 l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
..|.+.|+.|++ ...++.++.++|.+.||.++.-.|++-+-||
T Consensus 25 ~~~~~~Cy~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 67 (141)
T 1hup_A 25 KQVGNKFFLTNG-EIMTFEKVKALCVKFQASVATPRNAAENGAI 67 (141)
T ss_dssp EEETTEEEEEEE-EEEEHHHHHHHHHHTTCEECCCCSHHHHHHH
T ss_pred EEECCEEEEEeC-CCcCHHHHHHHHHhCCCEECccCCHHHHHHH
Confidence 456788888875 5789999999999999999988887765554
No 120
>1gz2_A Ovocleidin-17, OC-17 ovocleidin; structural protein, CTLD, eggshell structural protein, phosphoprotein, sugar-binding protein, glycoprotein; HET: SEP; 1.5A {Gallus gallus} SCOP: d.169.1.1
Probab=58.69 E-value=4.1 Score=31.39 Aligned_cols=48 Identities=25% Similarity=0.482 Sum_probs=38.4
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhc--cCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 281 (291)
+|.| ...|.+.++.|+.. ..++.++.++|.+ .||.|+.-.+.+-+-||
T Consensus 5 Cp~g-w~~~~~~Cy~~~~~-~~~w~~A~~~C~~~~~g~~La~i~s~~e~~~l 54 (142)
T 1gz2_A 5 CGPG-WVPTPGGCLGFFSR-ELSWSRAESFCRRWGPGSHLAAVRSAAELRLL 54 (142)
T ss_dssp CCTT-CEEETTEEEEEEEE-EECHHHHHHHHHTTCTTEEECCCCSHHHHHHH
T ss_pred CCcc-cEEcCCEEEEEcCC-CcCHHHHHHHHhccCCCceECccCCHHHHHHH
Confidence 5555 44578999988864 6899999999999 99999988887665554
No 121
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=57.83 E-value=8.6 Score=32.07 Aligned_cols=61 Identities=23% Similarity=0.179 Sum_probs=37.1
Q ss_pred CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEE
Q psy4520 126 DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLII 204 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L 204 (291)
+.++|+||+.|++.. +++..|+.++.+ +++|++..+...- +.|. ..++..+-.-||.|.-+
T Consensus 76 ~~dvviIDE~Q~~~~-------------~~~~~l~~l~~~-~~~Vi~~Gl~~~f-~~~~---f~~~~~ll~~ad~v~~l 136 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-------------SLFEVVKDLLDR-GIDVFCAGLDLTH-KQNP---FETTALLLSLADTVIKK 136 (184)
T ss_dssp TEEEEEECCGGGSCT-------------THHHHHHHHHHT-TCEEEEEEESBCT-TSCB---CHHHHHHHHHCSEEEEC
T ss_pred CCCEEEEECcccCCH-------------HHHHHHHHHHHC-CCCEEEEeecccc-ccCC---ccchHHHHHHhhheEEe
Confidence 578999999998521 145567777777 9999988763211 1111 22333344457777444
No 122
>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus, virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1
Probab=57.74 E-value=4.9 Score=33.22 Aligned_cols=50 Identities=28% Similarity=0.490 Sum_probs=40.0
Q ss_pred CCCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccce
Q psy4520 231 DQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282 (291)
Q Consensus 231 ~g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
.+|.| ...|.+.++.|++ ...++.++.++|.+.||.|+.-.+.+-+-||.
T Consensus 26 ~Cp~g-w~~~~~~CY~~~~-~~~tw~~A~~~C~~~g~~La~i~s~~e~~fl~ 75 (175)
T 2b6b_D 26 PCPWE-WTFFQGNCYFMSN-SQRNWHDSITACKEVGAQLVVIKSAEEQNFLQ 75 (175)
T ss_pred CCCcC-cEEeCCEEEEEEC-CccCHHHHHHHHhhCCCEEeeeCCHHHHHHHH
Confidence 46666 4568899998876 56899999999999999999888777666654
No 123
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.00A {Enterococcus faecalis}
Probab=57.20 E-value=21 Score=29.18 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=31.4
Q ss_pred CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 127 TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.-+||||.-+-....+ ........+-.-+..|-..|++.++||+.+.|.
T Consensus 5 ~aLlvID~Q~~f~~~~-~~~~~~~~~~~~i~~li~~ar~~g~pVi~t~~~ 53 (167)
T 2a67_A 5 RALLLIDFQKGIESPT-QQLYRLPAVLDKVNQRIAVYRQHHAPIIFVQHE 53 (167)
T ss_dssp EEEEEECCBTTSCCSS-CCCTTHHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cEEEEEcCcHHhcCCC-CcccCHHHHHHHHHHHHHHHHHCCCeEEEEEeC
Confidence 3489999886554332 111223334445556666789999999999884
No 124
>2ls8_A C-type lectin domain family 4 member D; structural genomics, NEW YORK structural genomics research consortium, nysgrc, PSI-biology, immune system; NMR {Homo sapiens}
Probab=61.36 E-value=2.3 Score=34.12 Aligned_cols=43 Identities=26% Similarity=0.416 Sum_probs=34.9
Q ss_pred eeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccce
Q psy4520 239 TYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282 (291)
Q Consensus 239 ~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (291)
.|.+.|+.|++. ..++.++.++|.+.||.|+.-.+.+-+-||.
T Consensus 9 ~~~~~CY~~~~~-~~tw~~A~~~C~~~g~~La~i~s~~e~~~l~ 51 (156)
T 2ls8_A 9 AFQSNCYFPLTD-NKTWAESERNCSGMGAHLMTISTEAEQNFII 51 (156)
Confidence 467889888765 4899999999999999999877776665553
No 125
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=56.52 E-value=46 Score=26.49 Aligned_cols=62 Identities=5% Similarity=-0.086 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHH---HHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 110 PLKLVMEAVEHA---MYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 110 ~i~~i~~~~r~~---~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
+.++..+..+.+ .+..|+++|++=..-.-.............+..+-+.++.+|++++|+++
T Consensus 95 ~~~~~~~~~~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~i 159 (204)
T 3p94_A 95 ALENVFGNLVSMAELAKANHIKVIFCSVLPAYDFPWRPGMQPADKVIQLNKWIKEYADKNGLTYV 159 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEECCCCCSCBTTBTTCCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 455544444332 23478999888654211110001112345677888999999999999988
No 126
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=56.18 E-value=31 Score=32.67 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGS 191 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgS 191 (291)
.+..+.+|.++ .+-++++.|+=. . +-|. ....++...|+++.++.++.|++|+|.-..
T Consensus 139 rQRVaiArAL~--~~P~lLLLDEPt--s-----~LD~-~~~~~l~~~l~~l~~~~g~tii~vTHd~~e------------ 196 (381)
T 3rlf_A 139 RQRVAIGRTLV--AEPSVFLLDEPL--S-----NLDA-ALRVQMRIEISRLHKRLGRTMIYVTHDQVE------------ 196 (381)
T ss_dssp HHHHHHHHHHH--HCCSEEEEESTT--T-----TSCH-HHHHHHHHHHHHHHHHHCCEEEEECSCHHH------------
T ss_pred HHHHHHHHHHH--cCCCEEEEECCC--c-----CCCH-HHHHHHHHHHHHHHHhCCCEEEEEECCHHH------------
Confidence 45666666654 456899999872 1 1222 445678999999999999999999995332
Q ss_pred ccccccCccEEEEEc
Q psy4520 192 AKATQESDNVLIIQQ 206 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 197 --a~~~aDri~vl~~ 209 (381)
T 3rlf_A 197 --AMTLADKIVVLDA 209 (381)
T ss_dssp --HHHHCSEEEEEET
T ss_pred --HHHhCCEEEEEEC
Confidence 4456777777764
No 127
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=55.80 E-value=16 Score=30.92 Aligned_cols=61 Identities=21% Similarity=0.091 Sum_probs=39.2
Q ss_pred CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEE
Q psy4520 126 DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLII 204 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L 204 (291)
..++|+||+.|++. . +++..|+.++.+ ++||++--+...-..+| ..+|..+-..||.|.=+
T Consensus 81 ~~dvViIDEaqfl~-------~------~~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~----F~~~~~L~~~AD~V~el 141 (191)
T 1xx6_A 81 DTEVIAIDEVQFFD-------D------EIVEIVNKIAES-GRRVICAGLDMDFRGKP----FGPIPELMAIAEFVDKI 141 (191)
T ss_dssp TCSEEEECSGGGSC-------T------HHHHHHHHHHHT-TCEEEEEECSBCTTSCB----CTTHHHHHHHCSEEEEC
T ss_pred cCCEEEEECCCCCC-------H------HHHHHHHHHHhC-CCEEEEEecccccccCc----CccHHHHHHHcccEEee
Confidence 47999999999842 1 124567777776 99999875422111223 24566677788888544
No 128
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=55.59 E-value=31 Score=29.74 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=38.4
Q ss_pred CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEE
Q psy4520 126 DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLII 204 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L 204 (291)
.+++|+||+.|++ . + | +.-+..+| +.|++|++-.+...=..+| .-+|..+--.||.|.-|
T Consensus 91 ~~DvIlIDEaQFf---k----~----~---ve~~~~L~-~~gk~VI~~GL~~DF~~~~----F~~~~~Ll~~Ad~v~kl 150 (195)
T 1w4r_A 91 GVAVIGIDEGQFF---P----D----I---VEFCEAMA-NAGKTVIVAALDGTFQRKP----FGAILNLVPLAESVVKL 150 (195)
T ss_dssp TCSEEEESSGGGC---T----T----H---HHHHHHHH-HTTCEEEEEEESBCTTSSB----CTTGGGGGGGCSEEEEC
T ss_pred CCCEEEEEchhhh---H----H----H---HHHHHHHH-HCCCeEEEEeccccccccc----chhHHHHHHhcCeEEEe
Confidence 4899999999997 2 1 2 23347777 8999999887633322222 23344455678887665
No 129
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=55.50 E-value=16 Score=32.56 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=32.9
Q ss_pred CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 127 TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.-+||||.-+-..............+-.-+..|-..|++.|+||+.+.|.
T Consensus 33 ~ALlvID~Q~~f~~~~~~~~~~~~~~i~~i~~L~~~ar~~g~pVi~t~~~ 82 (287)
T 2fq1_A 33 AALLIHDMQDYFVSFWGENCPMMEQVIANIAALRDYCKQHNIPVYYTAQP 82 (287)
T ss_dssp EEEEEECCBHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCchHhhCccccccchHHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 45999998865554321112233444455667777899999999998773
No 130
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=55.20 E-value=26 Score=32.59 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+..+.+|.+ -..-+++++|+=. .+- |. ....++...|++++++.++.|++++|....
T Consensus 147 QRvalAraL--~~~P~lLLLDEP~--s~L-----D~-~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~------------- 203 (353)
T 1oxx_K 147 QRVALARAL--VKDPSLLLLDEPF--SNL-----DA-RMRDSARALVKEVQSRLGVTLLVVSHDPAD------------- 203 (353)
T ss_dssp HHHHHHHHH--TTCCSEEEEESTT--TTS-----CG-GGHHHHHHHHHHHHHHHCCEEEEEESCHHH-------------
T ss_pred HHHHHHHHH--HhCCCEEEEECCc--ccC-----CH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-------------
Confidence 444555544 4567899999882 211 11 223567888999999999999999995332
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 204 -~~~~adri~vl~~ 216 (353)
T 1oxx_K 204 -IFAIADRVGVLVK 216 (353)
T ss_dssp -HHHHCSEEEEEET
T ss_pred -HHHhCCEEEEEEC
Confidence 3455666666654
No 131
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=55.08 E-value=45 Score=29.20 Aligned_cols=70 Identities=13% Similarity=0.249 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+....+|.+ -.+-+++++|+-. .+ -| ...+..+.+.|+.++++.+..|++++|.-..
T Consensus 135 qrv~lAraL--~~~p~lllLDEPt--s~-----LD-~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~------------- 191 (253)
T 2nq2_C 135 QLILIARAI--ASECKLILLDEPT--SA-----LD-LANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ------------- 191 (253)
T ss_dssp HHHHHHHHH--HTTCSEEEESSSS--TT-----SC-HHHHHHHHHHHHHHHHTSCCEEEEEESCHHH-------------
T ss_pred HHHHHHHHH--HcCCCEEEEeCCc--cc-----CC-HHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-------------
Confidence 344555544 4567899999883 11 12 2445678888999988889999999995332
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 192 -~~~~~d~v~~l~~ 204 (253)
T 2nq2_C 192 -VVAIANKTLLLNK 204 (253)
T ss_dssp -HHHHCSEEEEEET
T ss_pred -HHHhCCEEEEEeC
Confidence 4567888888863
No 132
>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system; 2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D 1ja3_A 1p1z_D
Probab=54.72 E-value=6 Score=33.65 Aligned_cols=44 Identities=20% Similarity=0.352 Sum_probs=36.7
Q ss_pred ceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 237 TATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 237 ~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
...|.+.++.|+. ...++.++.++|.+.||.++.-.|.+-+-||
T Consensus 84 W~~~~~~CY~~~~-~~~tw~~A~~~C~~~g~~LasI~s~~E~~fl 127 (203)
T 3c8j_A 84 WFCYSTKCYYFIM-NKTTWSGCKANCQHYGVPILKIEDEDELKFL 127 (203)
T ss_dssp EEEEETEEEEEEE-EEECHHHHHHHHHHTTCCBCCCCSHHHHHHH
T ss_pred cEEeCCEEEEEEC-CCCCHHHHHHHHHhCCCEeeeeCCHHHHHHH
Confidence 5678899999987 4688999999999999999988877655554
No 133
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A
Probab=54.69 E-value=17 Score=31.90 Aligned_cols=49 Identities=14% Similarity=-0.038 Sum_probs=31.2
Q ss_pred CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 127 TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.-+||||.-+-..............+-.-+..|-..|++.++||+.+.+
T Consensus 45 tALlVID~Qn~f~~~~~~~~~~~~~vv~~i~~Ll~~aR~~g~pVI~t~~ 93 (236)
T 3ot4_A 45 YGLLIVDFVNGFADPAQFGGGNIAAAIETTRTVLAAARERGWAVAHSRI 93 (236)
T ss_dssp EEEEEECCBHHHHSTTTSCCSSHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred eEEEEEeCchhhcCCCCccccCHHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 3499999886554322111122233444466777889999999998874
No 134
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=54.54 E-value=62 Score=28.77 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceE--EEEeccCCcCCCCccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHV--TLVIHPRKENEQLTVNSVFG 190 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpV--ilvshpRk~ek~p~lsDLrg 190 (291)
+....+|.+ -.+-+++++|+-. .+ -|. ..+..+.+.|+.++++ +..| ++++|....
T Consensus 168 qRv~lAraL--~~~p~lLlLDEPt--s~-----LD~-~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~----------- 225 (279)
T 2ihy_A 168 QRVMIARAL--MGQPQVLILDEPA--AG-----LDF-IARESLLSILDSLSDS-YPTLAMIYVTHFIEE----------- 225 (279)
T ss_dssp HHHHHHHHH--HTCCSEEEEESTT--TT-----CCH-HHHHHHHHHHHHHHHH-CTTCEEEEEESCGGG-----------
T ss_pred HHHHHHHHH--hCCCCEEEEeCCc--cc-----cCH-HHHHHHHHHHHHHHHC-CCEEEEEEEecCHHH-----------
Confidence 344555544 4578999999983 11 222 4456688888999887 9999 999995432
Q ss_pred cccccccCccEEEEEc
Q psy4520 191 SAKATQESDNVLIIQQ 206 (291)
Q Consensus 191 Sg~IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 226 ---~~~~~d~v~~l~~ 238 (279)
T 2ihy_A 226 ---ITANFSKILLLKD 238 (279)
T ss_dssp ---CCTTCCEEEEEET
T ss_pred ---HHHhCCEEEEEEC
Confidence 4567899988853
No 135
>1wmz_A Lectin CEL-I, N-acetyl-D-galactosamine-specific C-type; C-type lectin, N-acetylgalactosamine, invertebrate, sugar binding protein; HET: NGA A2G; 1.70A {Cucumaria echinata} SCOP: d.169.1.1 PDB: 1wmy_A*
Probab=52.95 E-value=4.7 Score=31.20 Aligned_cols=48 Identities=21% Similarity=0.375 Sum_probs=37.9
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhh-------ccCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCR-------SRGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 281 (291)
+|.| ...|.+.+++|++. ..++.++.++|. +.||.|+.-.+++-+-||
T Consensus 3 Cp~g-w~~~~~~CY~~~~~-~~~w~~A~~~C~~~~~~~~~~g~~La~i~s~~e~~~l 57 (140)
T 1wmz_A 3 CPTD-WEAEGDHCYRFFNT-LTTWENAHHECVSYSCSTLNVRSDLVSVHSAAEQAYV 57 (140)
T ss_dssp CCTT-CEEETTEEEEEEEE-EECHHHHHHHHHTTCBGGGTEEEEECCCCSHHHHHHH
T ss_pred CCCc-ceecCCEEEEEECC-CcCHHHHHHhhhhhccCCCCCCcEEcccCCHHHHHHH
Confidence 3445 44578999999874 589999999999 999999988877655554
No 136
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=52.64 E-value=37 Score=31.70 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccC
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR 177 (291)
+..+.+|.+ -..-+++++|+=. . +-|. ....++...|++++++.++.|++++|..
T Consensus 152 QRvalArAL--~~~P~lLLLDEP~--s-----~LD~-~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 206 (355)
T 1z47_A 152 QRVALARAL--APRPQVLLFDEPF--A-----AIDT-QIRRELRTFVRQVHDEMGVTSVFVTHDQ 206 (355)
T ss_dssp HHHHHHHHH--TTCCSEEEEESTT--C-----CSSH-HHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred HHHHHHHHH--HcCCCEEEEeCCc--c-----cCCH-HHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 444555544 4567899999882 1 1222 4456788999999999999999999953
No 137
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=52.64 E-value=39 Score=31.74 Aligned_cols=71 Identities=14% Similarity=0.255 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGS 191 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgS 191 (291)
.+..+.+|.+ -..-+++++|+=. .+ -|. ....++...|+++.++.++.|++++|....
T Consensus 147 ~QRvalArAL--~~~P~lLLLDEP~--s~-----LD~-~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~------------ 204 (372)
T 1v43_A 147 RQRVAVARAI--VVEPDVLLMDEPL--SN-----LDA-KLRVAMRAEIKKLQQKLKVTTIYVTHDQVE------------ 204 (372)
T ss_dssp HHHHHHHHHH--TTCCSEEEEESTT--TT-----SCH-HHHHHHHHHHHHHHHHHTCEEEEEESCHHH------------
T ss_pred HHHHHHHHHH--hcCCCEEEEcCCC--cc-----CCH-HHHHHHHHHHHHHHHhCCCEEEEEeCCHHH------------
Confidence 5566667655 4567899999882 11 222 345678899999999999999999995332
Q ss_pred ccccccCccEEEEEc
Q psy4520 192 AKATQESDNVLIIQQ 206 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R 206 (291)
+...||.|+++..
T Consensus 205 --a~~~adri~vl~~ 217 (372)
T 1v43_A 205 --AMTMGDRIAVMNR 217 (372)
T ss_dssp --HHHHCSEEEEEET
T ss_pred --HHHhCCEEEEEEC
Confidence 4456777777754
No 138
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=52.64 E-value=42 Score=26.76 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=30.2
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
.|.++|++-+.- .... ........+.++.+.++++|++++|+++
T Consensus 129 ~~~~vil~~p~~--~~~~-~~~~~~~~~~~~n~~~~~~a~~~~~~~v 172 (216)
T 3rjt_A 129 RVREMFLLSPFY--LEPN-RSDPMRKTVDAYIEAMRDVAASEHVPFV 172 (216)
T ss_dssp GSSEEEEECCCC--CCCC-TTSHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred cCCeEEEECCCc--CCCC-cchHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 489999986431 1111 1112346677889999999999999987
No 139
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=52.56 E-value=41 Score=29.56 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+....+|.+ -.+-+++++|+=. .+ -|. ..+..+.+.|+.++++ +..|++++|.-..
T Consensus 160 qRv~lAraL--~~~p~lllLDEPt--s~-----LD~-~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~------------- 215 (262)
T 1b0u_A 160 QRVSIARAL--AMEPDVLLFDEPT--SA-----LDP-ELVGEVLRIMQQLAEE-GKTMVVVTHEMGF------------- 215 (262)
T ss_dssp HHHHHHHHH--HTCCSEEEEESTT--TT-----SCH-HHHHHHHHHHHHHHHT-TCCEEEECSCHHH-------------
T ss_pred HHHHHHHHH--hcCCCEEEEeCCC--cc-----CCH-HHHHHHHHHHHHHHhC-CCEEEEEeCCHHH-------------
Confidence 344445543 4567999999983 11 222 4456788888888887 9999999994321
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 216 -~~~~~d~v~~l~~ 228 (262)
T 1b0u_A 216 -ARHVSSHVIFLHQ 228 (262)
T ss_dssp -HHHHCSEEEEEET
T ss_pred -HHHhCCEEEEEEC
Confidence 5567999999964
No 140
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=52.56 E-value=78 Score=25.43 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=40.6
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLII 204 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L 204 (291)
.+.+++++|+-. .+ .|. .....+...|+.++++ +..|++++|... +.+-||.|+++
T Consensus 80 ~~p~lllLDEPt--~~-----LD~-~~~~~l~~~l~~~~~~-~~tiiivsH~~~---------------~~~~~d~ii~l 135 (148)
T 1f2t_B 80 GEISLLILDEPT--PY-----LDE-ERRRKLITIMERYLKK-IPQVILVSHDEE---------------LKDAADHVIRI 135 (148)
T ss_dssp SSCSEEEEESCS--CT-----TCH-HHHHHHHHHHHHTGGG-SSEEEEEESCGG---------------GGGGCSEEEEE
T ss_pred CCCCEEEEECCC--cc-----CCH-HHHHHHHHHHHHHHcc-CCEEEEEEChHH---------------HHHhCCEEEEE
Confidence 568999999873 11 122 3345677888887765 788999999542 33558999999
Q ss_pred Ec
Q psy4520 205 QQ 206 (291)
Q Consensus 205 ~R 206 (291)
..
T Consensus 136 ~~ 137 (148)
T 1f2t_B 136 SL 137 (148)
T ss_dssp EE
T ss_pred Ec
Confidence 64
No 141
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=52.35 E-value=40 Score=31.57 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGS 191 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgS 191 (291)
.+..+.+|.+ -..-+++++|+=. . +-|. ....++...|+++.++.++.|++++|....
T Consensus 145 ~QRvalArAL--~~~P~lLLLDEP~--s-----~LD~-~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~------------ 202 (372)
T 1g29_1 145 RQRVALGRAI--VRKPQVFLMDEPL--S-----NLDA-KLRVRMRAELKKLQRQLGVTTIYVTHDQVE------------ 202 (372)
T ss_dssp HHHHHHHHHH--HTCCSEEEEECTT--T-----TSCH-HHHHHHHHHHHHHHHHHTCEEEEEESCHHH------------
T ss_pred HHHHHHHHHH--hcCCCEEEECCCC--c-----cCCH-HHHHHHHHHHHHHHHhcCCEEEEECCCHHH------------
Confidence 3455555554 4567899999882 1 1222 445668889999999999999999995332
Q ss_pred ccccccCccEEEEEc
Q psy4520 192 AKATQESDNVLIIQQ 206 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 203 --a~~~adri~vl~~ 215 (372)
T 1g29_1 203 --AMTMGDRIAVMNR 215 (372)
T ss_dssp --HHHHCSEEEEEET
T ss_pred --HHHhCCEEEEEeC
Confidence 4456777777754
No 142
>1byf_A TC14, protein (polyandrocarpa lectin); C-type lectin, galactose-specific, sugar binding protein; 2.00A {Polyandrocarpa misakiensis} SCOP: d.169.1.1 PDB: 1tlg_A*
Probab=52.12 E-value=4.6 Score=30.80 Aligned_cols=39 Identities=28% Similarity=0.466 Sum_probs=31.0
Q ss_pred ceEeEEeeCCCCchhhhHhhhhccCCCccc--CCCccccccc
Q psy4520 242 GKCYIFYNRRPMNLRDSLAFCRSRGGSLVD--ESNPALQGFI 281 (291)
Q Consensus 242 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 281 (291)
|.+++|++ ...++.++.++|.+.||.|+. -.|.+-+-||
T Consensus 2 ~~Cy~~~~-~~~~w~~A~~~C~~~g~~La~~~i~s~~e~~~l 42 (125)
T 1byf_A 2 DYEILFSD-ETMNYADAGTYCQSRGMALVSSAMRDSTMVKAI 42 (125)
T ss_dssp CEEEEEEE-EEECHHHHHHHHHTTTCEESCGGGGSHHHHHHH
T ss_pred CeEEEEeC-CCCCHHHHHHHHHHcCCEeeecCCCCHHHHHHH
Confidence 56777776 468899999999999999999 6666555444
No 143
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=51.97 E-value=42 Score=31.36 Aligned_cols=70 Identities=14% Similarity=0.164 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+..+.+|.+ -..-++++.|+=. . +-|. ....++...|+++.++.++.|++++|.-..
T Consensus 140 QRvalArAL--~~~P~lLLLDEP~--s-----~LD~-~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~------------- 196 (359)
T 2yyz_A 140 QRVALARAL--VKQPKVLLFDEPL--S-----NLDA-NLRMIMRAEIKHLQQELGITSVYVTHDQAE------------- 196 (359)
T ss_dssp HHHHHHHHH--TTCCSEEEEESTT--T-----TSCH-HHHHHHHHHHHHHHHHHCCEEEEEESCHHH-------------
T ss_pred HHHHHHHHH--HcCCCEEEEECCc--c-----cCCH-HHHHHHHHHHHHHHHhcCCEEEEEcCCHHH-------------
Confidence 444555544 4567899999882 1 1222 345668899999999999999999995332
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+...||.|+++..
T Consensus 197 -~~~~adri~vl~~ 209 (359)
T 2yyz_A 197 -AMTMASRIAVFNQ 209 (359)
T ss_dssp -HHHHCSEEEEEET
T ss_pred -HHHhCCEEEEEEC
Confidence 3455677777754
No 144
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=51.97 E-value=53 Score=29.00 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....+|. .-.+-+++++|+-.- + -|. ..+..+.+.|+.++++ +..|++++|.-. .
T Consensus 167 Rv~lAra--L~~~p~lllLDEPts--~-----LD~-~~~~~~~~~l~~l~~~-g~tvi~vtHd~~--------------~ 221 (263)
T 2olj_A 167 RVAIARA--LAMEPKIMLFDEPTS--A-----LDP-EMVGEVLSVMKQLANE-GMTMVVVTHEMG--------------F 221 (263)
T ss_dssp HHHHHHH--HTTCCSEEEEESTTT--T-----SCH-HHHHHHHHHHHHHHHT-TCEEEEECSCHH--------------H
T ss_pred HHHHHHH--HHCCCCEEEEeCCcc--c-----CCH-HHHHHHHHHHHHHHhC-CCEEEEEcCCHH--------------H
Confidence 3444443 446679999999831 1 222 4456788889999887 999999999432 2
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+++-||.|+++..
T Consensus 222 ~~~~~d~v~~l~~ 234 (263)
T 2olj_A 222 AREVGDRVLFMDG 234 (263)
T ss_dssp HHHHCSEEEEEET
T ss_pred HHHhCCEEEEEEC
Confidence 5667999999964
No 145
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Probab=51.77 E-value=18 Score=29.77 Aligned_cols=48 Identities=4% Similarity=-0.076 Sum_probs=29.9
Q ss_pred cEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 128 GHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 128 ~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
-+||||.-+-....+.........+-.-+..|-..|++.++||+.+.|
T Consensus 5 aLlvID~Q~~f~~~g~l~~~~~~~~v~~i~~l~~~ar~~g~pVi~t~~ 52 (180)
T 1im5_A 5 ALIVVDMQRDFMPGGALPVPEGDKIIPKVNEYIRKFKEKGALIVATRD 52 (180)
T ss_dssp EEEEECCBGGGSTTSSSCCTTGGGGHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEcCCCccCCCCcccCCCHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 489999886555222111122222334456666778999999999987
No 146
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=51.45 E-value=64 Score=27.78 Aligned_cols=69 Identities=10% Similarity=0.161 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+....+|. .-.+-+++++|+-. .+ -|. .....+.+.|+.+++ .+..|++++|...
T Consensus 146 qrv~lAra--L~~~p~lllLDEPt--s~-----LD~-~~~~~l~~~l~~~~~-~g~tvi~vtHd~~-------------- 200 (240)
T 1ji0_A 146 QMLAIGRA--LMSRPKLLMMDEPS--LG-----LAP-ILVSEVFEVIQKINQ-EGTTILLVEQNAL-------------- 200 (240)
T ss_dssp HHHHHHHH--HTTCCSEEEEECTT--TT-----CCH-HHHHHHHHHHHHHHH-TTCCEEEEESCHH--------------
T ss_pred HHHHHHHH--HHcCCCEEEEcCCc--cc-----CCH-HHHHHHHHHHHHHHH-CCCEEEEEecCHH--------------
Confidence 34444444 45678999999983 11 122 445668888888876 5999999999532
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
.+..-||.|+++..
T Consensus 201 ~~~~~~d~v~~l~~ 214 (240)
T 1ji0_A 201 GALKVAHYGYVLET 214 (240)
T ss_dssp HHHHHCSEEEEEET
T ss_pred HHHHhCCEEEEEEC
Confidence 15567899999964
No 147
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=51.12 E-value=33 Score=30.44 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=49.0
Q ss_pred CCHHH--HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccc
Q psy4520 109 QPLKL--VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVN 186 (291)
Q Consensus 109 ~~i~~--i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~ls 186 (291)
.|--+ .+..+|.+ -..-+++++|+-.- + -|. .....+.+.|+.++++.+..|++++|.-..
T Consensus 157 LSgGq~QRv~lAraL--~~~p~lllLDEPts--~-----LD~-~~~~~i~~~l~~~~~~~g~tviivtHd~~~------- 219 (271)
T 2ixe_A 157 LSGGQRQAVALARAL--IRKPRLLILDNATS--A-----LDA-GNQLRVQRLLYESPEWASRTVLLITQQLSL------- 219 (271)
T ss_dssp SCHHHHHHHHHHHHH--TTCCSEEEEESTTT--T-----CCH-HHHHHHHHHHHHCTTTTTSEEEEECSCHHH-------
T ss_pred CCHHHHHHHHHHHHH--hcCCCEEEEECCcc--C-----CCH-HHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-------
Confidence 44443 44444443 45679999999831 1 222 345678889999988889999999994221
Q ss_pred cccccccccccCccEEEEEc
Q psy4520 187 SVFGSAKATQESDNVLIIQQ 206 (291)
Q Consensus 187 DLrgSg~IeQdAD~Vi~L~R 206 (291)
+.. ||.|++|..
T Consensus 220 -------~~~-~d~v~~l~~ 231 (271)
T 2ixe_A 220 -------AER-AHHILFLKE 231 (271)
T ss_dssp -------HTT-CSEEEEEET
T ss_pred -------HHh-CCEEEEEEC
Confidence 334 899999964
No 148
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0
Probab=50.91 E-value=20 Score=30.34 Aligned_cols=48 Identities=15% Similarity=-0.085 Sum_probs=31.3
Q ss_pred CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 127 TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.-+||||.-+-..... ........+-.-+..|-..|++.++||+.+.|
T Consensus 14 tALlvID~Q~~f~~~~-~~~~~~~~~i~~i~~Li~~ar~~g~pVi~t~~ 61 (199)
T 3txy_A 14 VALVAIDLQNGIVVLP-MVPQSGGDVVAKTAELANAFRARKLPVIFVHT 61 (199)
T ss_dssp EEEEEECCBHHHHTSC-CBSSCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEcCchhhhCCC-cCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 4589999886544321 11122333444566677789999999999987
No 149
>1nf9_A Phenazine biosynthesis protein PHZD; isochorismatase, enzyme, phenazine pathway, hydrolase; HET: BOG; 1.50A {Pseudomonas aeruginosa} SCOP: c.33.1.3 PDB: 1nf8_A* 3r77_A*
Probab=50.85 E-value=19 Score=30.38 Aligned_cols=47 Identities=6% Similarity=-0.010 Sum_probs=31.2
Q ss_pred CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 127 TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.-+||||.-+-...... ......+-.-+..|-..|++.|+||+.+.|
T Consensus 32 tALlvID~Q~~f~~~~~--~~~~~~~i~~i~~l~~~ar~~g~pVi~t~~ 78 (207)
T 1nf9_A 32 AVLLVHDMQRYFLRPLP--ESLRAGLVANAARLRRWCVEQGVQIAYTAQ 78 (207)
T ss_dssp EEEEEESCBHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred eEEEEECChHHhcCCCC--cccHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 45999998865554321 122333444556666778999999999977
No 150
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=50.18 E-value=35 Score=31.75 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccC
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR 177 (291)
+..+.+|. .-..-+++++|+=. .+ -|. .....+...|++++++.++.|++++|..
T Consensus 134 QRvalAra--L~~~P~lLLLDEP~--s~-----LD~-~~~~~l~~~l~~l~~~~g~tii~vTHd~ 188 (348)
T 3d31_A 134 QRVALARA--LVTNPKILLLDEPL--SA-----LDP-RTQENAREMLSVLHKKNKLTVLHITHDQ 188 (348)
T ss_dssp HHHHHHHH--TTSCCSEEEEESSS--TT-----SCH-HHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred HHHHHHHH--HHcCCCEEEEECcc--cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34444544 34667899999872 11 222 4456688999999999999999999953
No 151
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=50.08 E-value=5.7 Score=32.79 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=36.6
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
+|.| .. |.+.|+.|++. ..+|.++.++|.+.||.++.-.|++-+-||
T Consensus 51 Cp~g-w~-~~~~CY~~~~~-~~tw~~A~~~C~~~gg~La~i~s~~e~~~l 97 (182)
T 1htn_A 51 CLKG-TK-VHMKCFLAFTQ-TKTFHEASEDCISRGGTLSTPQTGSENDAL 97 (182)
T ss_dssp HHHS-EE-ETTEEEEEEEE-EECHHHHHHHHHTTTCEECCCCSHHHHHHH
T ss_pred CCCC-cE-ECCEEEEEECC-CcCHHHHHHHHhhCCCEEeeeCCHHHHHHH
Confidence 4556 33 77899988864 688999999999999999987777655443
No 152
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=49.96 E-value=13 Score=32.54 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=39.0
Q ss_pred CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEE
Q psy4520 126 DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQ 205 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~ 205 (291)
.+++|+||+.|++.. + .+..|+.+|.+ ++||++--+...=..+| .-+|..+--.||.|.=|.
T Consensus 101 ~~dvViIDEaQF~~~------~-------~V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~----F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDG------D-------IVEVVQVLANR-GYRVIVAGLDQDFRGLP----FGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGGSCT------T-------HHHHHHHHHHT-TCEEEEEECSBCTTSCB----CTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECcccCCH------H-------HHHHHHHHhhC-CCEEEEEecccccccCc----cccHHHHHHhcccEEeee
Confidence 489999999999531 1 23556666665 99999876522211222 334555666788887663
No 153
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=49.63 E-value=52 Score=28.31 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+....||.+ -.+-++++.|+-. . +-|. ..+..+.+.|+.++++.++.|++++|.-.
T Consensus 152 QRv~iAral--~~~p~llllDEPt--s-----~LD~-~~~~~i~~~l~~l~~~~g~tvi~vtHd~~-------------- 207 (235)
T 3tif_A 152 QRVAIARAL--ANNPPIILADQPT--W-----ALDS-KTGEKIMQLLKKLNEEDGKTVVVVTHDIN-------------- 207 (235)
T ss_dssp HHHHHHHHH--TTCCSEEEEESTT--T-----TSCH-HHHHHHHHHHHHHHHHHCCEEEEECSCHH--------------
T ss_pred HHHHHHHHH--HcCCCEEEEeCCc--c-----cCCH-HHHHHHHHHHHHHHHHcCCEEEEEcCCHH--------------
Confidence 445555544 4678999999983 1 1222 44567899999999999999999999422
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+.+-||.|++++.
T Consensus 208 -~~~~~d~i~~l~~ 220 (235)
T 3tif_A 208 -VARFGERIIYLKD 220 (235)
T ss_dssp -HHTTSSEEEEEET
T ss_pred -HHHhCCEEEEEEC
Confidence 2246899999974
No 154
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=49.52 E-value=25 Score=25.73 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+.++.++.+ .+...++||+|.- + .+ .+. -++++.||......++||++++-.
T Consensus 35 ~~~~a~~~l----~~~~~dlii~D~~-l-~~-----~~g----~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 35 SGTDALHAM----STRGYDAVFIDLN-L-PD-----TSG----LALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp SHHHHHHHH----HHSCCSEEEEESB-C-SS-----SBH----HHHHHHHHHSCCSSCCEEEEEECC
T ss_pred CHHHHHHHH----HhcCCCEEEEeCC-C-CC-----CCH----HHHHHHHHhhhccCCCCEEEEECC
Confidence 455544433 4467999999975 2 21 132 246777777655788999998763
No 155
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=49.50 E-value=41 Score=31.46 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+..+.+|.+ -..-+++++|+=. .+ -|. ....++...|++++++.++.|++++|.-..
T Consensus 140 QRvalArAL--~~~P~lLLLDEP~--s~-----LD~-~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~------------- 196 (362)
T 2it1_A 140 QRVAIARAL--VKEPEVLLLDEPL--SN-----LDA-LLRLEVRAELKRLQKELGITTVYVTHDQAE------------- 196 (362)
T ss_dssp HHHHHHHHH--TTCCSEEEEESGG--GG-----SCH-HHHHHHHHHHHHHHHHHTCEEEEEESCHHH-------------
T ss_pred HHHHHHHHH--HcCCCEEEEECcc--cc-----CCH-HHHHHHHHHHHHHHHhCCCEEEEECCCHHH-------------
Confidence 444555544 4567899999882 21 122 345678899999999999999999995332
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 197 -a~~~adri~vl~~ 209 (362)
T 2it1_A 197 -ALAMADRIAVIRE 209 (362)
T ss_dssp -HHHHCSEEEEEET
T ss_pred -HHHhCCEEEEEEC
Confidence 3455677777654
No 156
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=49.18 E-value=46 Score=28.94 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....+|. .-.+-++++.|+-. .+ -|. ..+..+.+.|+.++++.+..|++++|.-. .
T Consensus 134 Rv~lAra--l~~~p~lllLDEPt--s~-----LD~-~~~~~~~~~l~~l~~~~g~tvi~vtHd~~--------------~ 189 (240)
T 2onk_A 134 RVALARA--LVIQPRLLLLDEPL--SA-----VDL-KTKGVLMEELRFVQREFDVPILHVTHDLI--------------E 189 (240)
T ss_dssp HHHHHHH--HTTCCSSBEEESTT--SS-----CCH-HHHHHHHHHHHHHHHHHTCCEEEEESCHH--------------H
T ss_pred HHHHHHH--HHcCCCEEEEeCCc--cc-----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------------H
Confidence 3344443 45678899999983 11 222 44567888999999988999999999432 2
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+.+-||.|+++..
T Consensus 190 ~~~~~d~i~~l~~ 202 (240)
T 2onk_A 190 AAMLADEVAVMLN 202 (240)
T ss_dssp HHHHCSEEEEEET
T ss_pred HHHhCCEEEEEEC
Confidence 5677999999964
No 157
>1yac_A Ycacgp, YCAC gene product; unknown bacterial hydrolase, three layer alpha-beta-alpha SA topology, ENTB homolog, cshase homolog; 1.80A {Escherichia coli} SCOP: c.33.1.3
Probab=48.89 E-value=26 Score=29.85 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=31.5
Q ss_pred CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 127 TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.-+||||.-+-...... ..+ ...+-.-+..|-..|++.++||+.+.|.
T Consensus 13 tALlvID~Q~~f~~~~~-~~~-~~~~i~~i~~l~~~ar~~g~pVi~t~~~ 60 (208)
T 1yac_A 13 AAVLLVDHQAGLLSLVR-DIE-PDKFKNNVLALGDLAKYFNLPTILTTSA 60 (208)
T ss_dssp EEEEEECCBTTGGGGCC-SSC-HHHHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred eEEEEEcCchhhhcccc-ccc-HHHHHHHHHHHHHHHHHcCCcEEEEEec
Confidence 45999998864443221 112 2334445566667899999999999984
No 158
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=48.70 E-value=85 Score=27.51 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+.+..+|. .-.+-+++++|+-. .+ .|. ..+..+.+.|+.++++ +..|++++|.-..
T Consensus 153 qRv~lAra--L~~~p~lllLDEPt--s~-----LD~-~~~~~l~~~l~~l~~~-g~tiiivtHd~~~------------- 208 (256)
T 1vpl_A 153 RKLLIARA--LMVNPRLAILDEPT--SG-----LDV-LNAREVRKILKQASQE-GLTILVSSHNMLE------------- 208 (256)
T ss_dssp HHHHHHHH--HTTCCSEEEEESTT--TT-----CCH-HHHHHHHHHHHHHHHT-TCEEEEEECCHHH-------------
T ss_pred HHHHHHHH--HHcCCCEEEEeCCc--cc-----cCH-HHHHHHHHHHHHHHhC-CCEEEEEcCCHHH-------------
Confidence 34444443 45678999999983 11 222 4456678888888765 9999999994331
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+++-||.|+++..
T Consensus 209 -~~~~~d~v~~l~~ 221 (256)
T 1vpl_A 209 -VEFLCDRIALIHN 221 (256)
T ss_dssp -HTTTCSEEEEEET
T ss_pred -HHHHCCEEEEEEC
Confidence 4567899999864
No 159
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=48.69 E-value=4.4 Score=32.24 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=33.4
Q ss_pred eeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 240 f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
|.+.|+.|++ ...++.++.++|.+.||.++.-.|++-+-||
T Consensus 35 ~~~~Cy~~~~-~~~tw~~A~~~C~~~g~~La~i~s~~e~~~l 75 (149)
T 1rtm_1 35 SGKKFFVTNH-ERMPFSKVKALCSELRGTVAIPRNAEENKAI 75 (149)
T ss_dssp TTSCEEEEEE-EEEEHHHHHHHHHHTTCEECCCCSHHHHHHH
T ss_pred eCCEEEEEeC-CCCCHHHHHHHHHhCCCEEeeeCCHHHHHHH
Confidence 4477888874 5789999999999999999988877665554
No 160
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=48.68 E-value=22 Score=28.20 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=29.6
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.++..++|++|.- |-+ .+-. ++++.+|+...-.++||++++-
T Consensus 54 ~~~~~DlillD~~--MP~-----mdG~----el~~~ir~~~~~~~ipvI~lTa 95 (134)
T 3to5_A 54 KKGDFDFVVTDWN--MPG-----MQGI----DLLKNIRADEELKHLPVLMITA 95 (134)
T ss_dssp HHHCCSEEEEESC--CSS-----SCHH----HHHHHHHHSTTTTTCCEEEEES
T ss_pred HhCCCCEEEEcCC--CCC-----CCHH----HHHHHHHhCCCCCCCeEEEEEC
Confidence 3457899999976 432 2333 3678888766678999998864
No 161
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans}
Probab=48.43 E-value=31 Score=29.59 Aligned_cols=50 Identities=12% Similarity=-0.063 Sum_probs=31.5
Q ss_pred CcEEEEeccccccCCCC-CCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 127 TGHVIIDNVQFMLGLSD-SALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~-~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.-+||||.-+-...... -.......+-.-+..|-..|++.++||+.+.|.
T Consensus 7 tALlvID~Q~~f~~~~~~~~~~~~~~~i~~i~~Ll~~ar~~g~pVi~t~~~ 57 (211)
T 3oqp_A 7 RALIVIDVQNEYVTGDLPIEYPDVQSSLANIARAMDAARAAGVPVVIVQNF 57 (211)
T ss_dssp EEEEEECCBGGGTTSSSCCCBSCHHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred EEEEEEcCCHhhcCCccccCCcCHHHHHHHHHHHHHHHHHCCCeEEEEEec
Confidence 45899998764443221 111223344445566667889999999999883
No 162
>3hu5_A Isochorismatase family protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}
Probab=48.00 E-value=29 Score=29.36 Aligned_cols=49 Identities=16% Similarity=0.046 Sum_probs=30.7
Q ss_pred CCcEEEEeccccccCCC-CCCccHHHHHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 126 DTGHVIIDNVQFMLGLS-DSALDRFYMQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~-~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
..-+||||.-+-..... .........+-.-+..|-..|++.++||+.+.
T Consensus 8 ~tALlvID~Q~~f~~~~g~l~~~~~~~iv~~i~~L~~~ar~~g~pVi~~~ 57 (204)
T 3hu5_A 8 TVALAIIDMQNDFVLPGAPACVEGAMGTVPVIAGLLAKARAEGWMVLHVV 57 (204)
T ss_dssp CEEEEEECCBHHHHSTTSTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CeEEEEECCchhhhCCCCcccccCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34599999886555322 11122233344456677778999999999864
No 163
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=47.63 E-value=48 Score=32.60 Aligned_cols=70 Identities=7% Similarity=0.096 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+....||. .-.+-+++|+|+=.- +-| ...+.++.+.|+.++++.++.|++|+|-...
T Consensus 392 QRv~iAra--L~~~p~lLlLDEPT~-------gLD-~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~------------- 448 (538)
T 3ozx_A 392 QKLYIAAT--LAKEADLYVLDQPSS-------YLD-VEERYIVAKAIKRVTRERKAVTFIIDHDLSI------------- 448 (538)
T ss_dssp HHHHHHHH--HHSCCSEEEEESTTT-------TCC-HHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-------------
T ss_pred HHHHHHHH--HHcCCCEEEEeCCcc-------CCC-HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-------------
Confidence 34444544 346789999999831 122 2445778999999999999999999995432
Q ss_pred cccccCccEEEEEc
Q psy4520 193 KATQESDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R 206 (291)
+..-||.|++++.
T Consensus 449 -~~~~aDri~vl~~ 461 (538)
T 3ozx_A 449 -HDYIADRIIVFKG 461 (538)
T ss_dssp -HHHHCSEEEEEEE
T ss_pred -HHHhCCEEEEEeC
Confidence 5667899999975
No 164
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=47.20 E-value=29 Score=25.79 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+.++.++.+ ..+..++||+|.- + .+ .+. -++++.||......++||++++-
T Consensus 38 ~~~~a~~~l----~~~~~dlvi~d~~-l-~~-----~~g----~~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 38 SAAQALEQV----ARRPYAAMTVDLN-L-PD-----QDG----VSLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp SHHHHHHHH----HHSCCSEEEECSC-C-SS-----SCH----HHHHHHHHTSGGGTTCEEEEECT
T ss_pred CHHHHHHHH----HhCCCCEEEEeCC-C-CC-----CCH----HHHHHHHHhCcccCCCCEEEEec
Confidence 345544433 4567899999976 2 22 122 24677777766677999999865
No 165
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=47.18 E-value=10 Score=28.57 Aligned_cols=19 Identities=16% Similarity=0.041 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhcCceEE
Q psy4520 153 DTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 153 ~~i~r~LK~~Ake~~VpVi 171 (291)
+.+-.+++..|+|+||||+
T Consensus 26 ~~~A~~I~~~A~e~~VPi~ 44 (83)
T 3bzy_B 26 DAKALQIIKLAELYDIPVI 44 (83)
T ss_dssp THHHHHHHHHHHHTTCCEE
T ss_pred cHHHHHHHHHHHHcCCCEE
Confidence 5578899999999999998
No 166
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=47.13 E-value=52 Score=30.80 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGS 191 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgS 191 (291)
.+..+.+|.+ -..-++++.|+=. . +-|. ....++...|+++.++.++.|++|+|.-..
T Consensus 144 ~QRValArAL--~~~P~lLLLDEPt--s-----~LD~-~~r~~l~~~l~~~~~~~g~tvi~vTHd~~e------------ 201 (359)
T 3fvq_A 144 QQRAALARAL--APDPELILLDEPF--S-----ALDE-QLRRQIREDMIAALRANGKSAVFVSHDREE------------ 201 (359)
T ss_dssp HHHHHHHHHH--TTCCSEEEEESTT--T-----TSCH-HHHHHHHHHHHHHHHHTTCEEEEECCCHHH------------
T ss_pred HHHHHHHHHH--HcCCCEEEEeCCc--c-----cCCH-HHHHHHHHHHHHHHHhCCCEEEEEeCCHHH------------
Confidence 4455556554 4567899999872 1 1222 334567778999999999999999995432
Q ss_pred ccccccCccEEEEEc
Q psy4520 192 AKATQESDNVLIIQQ 206 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 202 --a~~~aDri~vl~~ 214 (359)
T 3fvq_A 202 --ALQYADRIAVMKQ 214 (359)
T ss_dssp --HHHHCSEEEEEET
T ss_pred --HHHHCCEEEEEEC
Confidence 4456777777764
No 167
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=46.91 E-value=28 Score=30.20 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHH------HHHHHHHHHHHHHhcCceEEEE
Q psy4520 111 LKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYM------QDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~------~~~i~r~LK~~Ake~~VpVilv 173 (291)
++.+.+.++.+ ...|.++||.=++ .+.+-.....+.... -+..++.|+.+|++++|+|++=
T Consensus 20 ~~~~~~~i~~A-~~~gadlvvfPE~-~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~~~iv~G 86 (262)
T 3ivz_A 20 YSKAEKLIKEA-SKQGAQLVVLPEL-FDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGVYIVAG 86 (262)
T ss_dssp HHHHHHHHHHH-HHTTCSEEECCTT-TTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHH-HHCCCCEEEeCCC-cccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCcEEEEe
Confidence 44555555554 4579999999888 344322111111111 1357899999999999998854
No 168
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=46.73 E-value=25 Score=30.93 Aligned_cols=70 Identities=10% Similarity=0.140 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhCCCc-------EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCc
Q psy4520 112 KLVMEAVEHAMYVYDTG-------HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLT 184 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~-------lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~ 184 (291)
......+|.+..+ -+ ++++|+-. .+ -|. ..+..+.+.|+.++++ +..|++++|....
T Consensus 132 ~qrv~lAraL~~~--p~~~~~~~~lllLDEPt--s~-----LD~-~~~~~l~~~l~~l~~~-g~tviivtHd~~~----- 195 (249)
T 2qi9_C 132 WQRVRLAAVVLQI--TPQANPAGQLLLLDEPM--NS-----LDV-AQQSALDKILSALSQQ-GLAIVMSSHDLNH----- 195 (249)
T ss_dssp HHHHHHHHHHHHH--CTTTCTTCCEEEESSTT--TT-----CCH-HHHHHHHHHHHHHHHT-TCEEEEECSCHHH-----
T ss_pred HHHHHHHHHHHcC--CCcCCCCCeEEEEECCc--cc-----CCH-HHHHHHHHHHHHHHhC-CCEEEEEeCCHHH-----
Confidence 3455556655443 45 99999883 11 222 4456788889999887 9999999995332
Q ss_pred cccccccccccccCccEEEEEc
Q psy4520 185 VNSVFGSAKATQESDNVLIIQQ 206 (291)
Q Consensus 185 lsDLrgSg~IeQdAD~Vi~L~R 206 (291)
++.-||.|+++..
T Consensus 196 ---------~~~~~d~v~~l~~ 208 (249)
T 2qi9_C 196 ---------TLRHAHRAWLLKG 208 (249)
T ss_dssp ---------HHHHCSEEEEEET
T ss_pred ---------HHHhCCEEEEEEC
Confidence 4567899988864
No 169
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum}
Probab=46.54 E-value=34 Score=28.26 Aligned_cols=47 Identities=17% Similarity=0.000 Sum_probs=30.3
Q ss_pred cEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 128 GHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 128 ~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
-+||||.-+-..+.. ........+-.-+..|-..|++.++||+.+.+
T Consensus 4 ALlvID~Q~~f~~g~-~~~~~~~~~i~~i~~l~~~ar~~g~pVi~t~~ 50 (182)
T 3eef_A 4 ALVVVDMVNEFIHGR-LATPEAMKTVGPARKVIETFRRSGLPVVYVND 50 (182)
T ss_dssp EEEEECCBHHHHTST-TCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEcCCCcCCCCc-cCCccHHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 389999875544321 12233344444566677789999999999983
No 170
>3alu_A Lectin CEL-IV, C-type; C-type lectin, raffinose, sugar binding protein; HET: RAF; 1.65A {Cucumaria echinata} PDB: 3als_A* 3alt_A*
Probab=46.40 E-value=6.3 Score=31.37 Aligned_cols=48 Identities=27% Similarity=0.586 Sum_probs=38.1
Q ss_pred CCCCCceeeeceEeEEeeCCCCchhhhHhhhhc--c---------CCCcccCCCccccccc
Q psy4520 232 QPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--R---------GGSLVDESNPALQGFI 281 (291)
Q Consensus 232 g~~G~~l~f~g~~~~f~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~ 281 (291)
+|.| ...|.+.+++|+. ...++.++.++|.+ . ||.|+.-.|++-+-||
T Consensus 5 Cp~g-w~~~~~~CY~~~~-~~~tw~~A~~~C~~~~~~~~~~~~~~g~~La~i~s~~e~~~l 63 (157)
T 3alu_A 5 CPPL-WTGFNGKCFRLFH-NHLNFDNAENACRQFGLASCSGDELATGHLASIHSAESQAFL 63 (157)
T ss_dssp ECTT-CEEETTEEEEEEE-EEECHHHHHHHHTTEEEEETTSCEEEECEECCCCSHHHHHHH
T ss_pred CCCC-cEeeCCEEEEEEC-CccCHHHHHHHhhccccccccCCCCCCeEEcccCCHHHHHHH
Confidence 4555 4467899999986 57899999999999 8 9999988887755544
No 171
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=46.02 E-value=41 Score=25.18 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+.++.++.+ ..+..++||+|.- |.+ .+- -++++.||......++||++++-.
T Consensus 36 ~~~~al~~~----~~~~~dlvl~D~~--lp~-----~~g----~~~~~~lr~~~~~~~~pii~~t~~ 87 (136)
T 3t6k_A 36 SGEEALQQI----YKNLPDALICDVL--LPG-----IDG----YTLCKRVRQHPLTKTLPILMLTAQ 87 (136)
T ss_dssp SHHHHHHHH----HHSCCSEEEEESC--CSS-----SCH----HHHHHHHHHSGGGTTCCEEEEECT
T ss_pred CHHHHHHHH----HhCCCCEEEEeCC--CCC-----CCH----HHHHHHHHcCCCcCCccEEEEecC
Confidence 445554433 4567899999976 222 132 236777776555668999988753
No 172
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=45.33 E-value=36 Score=31.29 Aligned_cols=78 Identities=12% Similarity=0.027 Sum_probs=48.5
Q ss_pred HhCCC--cEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhc-CceEEEEeccCCcCC-------CCccccccccc
Q psy4520 123 YVYDT--GHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRS-HCHVTLVIHPRKENE-------QLTVNSVFGSA 192 (291)
Q Consensus 123 ~~~gv--~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~-~VpVilvshpRk~ek-------~p~lsDLrgSg 192 (291)
.++|+ +-||||++-.-.+.+....+.+ --++++.++.|.+++ ++||++ -.+||... |+.+....=.-
T Consensus 166 ~~~Gi~~~~IilDPgig~~gk~~~~~~~~--~~~~l~~l~~lk~~lPg~pvl~-G~SnkSfglp~~~~~R~~~n~~fl~~ 242 (300)
T 3k13_A 166 DKVGFNPHDIIFDPNVLAVATGIEEHNNY--AVDFIEATGWIRKNLPGAHVSG-GVSNLSFSFRGNNYIREAMHAVFLYH 242 (300)
T ss_dssp HHTCCCGGGEEEECCCCCCSSSCGGGTTH--HHHHHHHHHHHHHHSTTCEECC-BGGGGGGGGTTCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHEEEeCCCCccCCChHHhhHH--HHHHHHHHHHHHHhCCCCCEEE-EECcccccCCCCcchhHHHHHHHHHH
Confidence 67898 5799999932122221101111 235788999998889 999864 55677652 44445555555
Q ss_pred cccccCccEEE
Q psy4520 193 KATQESDNVLI 203 (291)
Q Consensus 193 ~IeQdAD~Vi~ 203 (291)
+++.-.|..|+
T Consensus 243 ai~~Gld~~Iv 253 (300)
T 3k13_A 243 AIQQGMDMGIV 253 (300)
T ss_dssp HHHTTCCEEEE
T ss_pred HHHcCCCEEec
Confidence 67777777765
No 173
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=45.33 E-value=14 Score=28.54 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhcCceEE
Q psy4520 153 DTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 153 ~~i~r~LK~~Ake~~VpVi 171 (291)
+.+-.+++..|+|+||||+
T Consensus 26 ~~~A~~I~e~A~e~gVPi~ 44 (93)
T 2vt1_B 26 NQCALAVRKYANEVGIPTV 44 (93)
T ss_dssp HHHHHHHHHHHHHTTCCEE
T ss_pred cHHHHHHHHHHHHcCCCEE
Confidence 5678899999999999998
No 174
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans}
Probab=44.45 E-value=38 Score=28.65 Aligned_cols=45 Identities=9% Similarity=-0.103 Sum_probs=30.6
Q ss_pred CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 127 TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.-+||||.-+-....- .....+-.-+..|-..|++.|+||+.+.|
T Consensus 15 ~ALlvID~Q~~f~~~~----~~~~~~i~~i~~l~~~ar~~g~pVi~t~~ 59 (199)
T 2b34_A 15 SALFVCDLQEKFASNI----KYFPEIITTSRRLIDAARILSIPTIVTEQ 59 (199)
T ss_dssp EEEEEECCBGGGTTSS----TTHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEEeCHhHHhhhc----CCHHHHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 4599999886554321 22233444455666679999999999988
No 175
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=44.42 E-value=55 Score=32.02 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=46.7
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++|+|+=. .+ -| ...+..+.+.|+.++++.+..|++++|.... +.+-||.|+
T Consensus 416 L~~~p~lLlLDEPt--~~-----LD-~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~--------------~~~~~drv~ 473 (538)
T 1yqt_A 416 LLRDADIYLLDEPS--AY-----LD-VEQRLAVSRAIRHLMEKNEKTALVVEHDVLM--------------IDYVSDRLM 473 (538)
T ss_dssp HTSCCSEEEEECTT--TT-----CC-HHHHHHHHHHHHHHHHHHTCEEEEECSCHHH--------------HHHHCSEEE
T ss_pred HHhCCCEEEEeCCc--cc-----CC-HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--------------HHHhCCEEE
Confidence 45678999999983 11 22 2456778999999999999999999996543 557789999
Q ss_pred EEE
Q psy4520 203 IIQ 205 (291)
Q Consensus 203 ~L~ 205 (291)
++.
T Consensus 474 vl~ 476 (538)
T 1yqt_A 474 VFE 476 (538)
T ss_dssp EEE
T ss_pred EEe
Confidence 996
No 176
>3fk4_A Rubisco-like protein; structural genomics, target 9463A, PSI-2, protein structure initiative; 2.00A {Bacillus cereus atcc 14579}
Probab=44.24 E-value=46 Score=32.06 Aligned_cols=47 Identities=9% Similarity=0.154 Sum_probs=37.7
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNV 135 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyL 135 (291)
+.+..|.++=.+..+|..+-++. .+++++++++++. .|...|.||++
T Consensus 196 eai~rA~~eTGe~k~y~~NiTa~--~~em~~ra~~a~e-~G~~~~mvd~~ 242 (414)
T 3fk4_A 196 EVLQSVYETYGHKTLYAVNLTGR--TFDLKENAKRAVQ-AGADILLFNVF 242 (414)
T ss_dssp HHHHHHHHHHCCCCEEEEECCSC--GGGHHHHHHHHHH-HTCSEEEECHH
T ss_pred HHHHHHHHhhCCcceEEeEcCCC--HHHHHHHHHHHHH-cCCCEEEEccc
Confidence 45556777777888999887774 3899999999754 78899999987
No 177
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum}
Probab=44.05 E-value=16 Score=30.93 Aligned_cols=49 Identities=10% Similarity=-0.077 Sum_probs=30.7
Q ss_pred CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 126 DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
..-+||||.-+-.........+. ..+-.-+..|-..|++.|+||+.+.|
T Consensus 12 ~~ALlvID~Q~~f~~~~~~~~~~-~~~i~~i~~l~~~ar~~g~pVi~~~~ 60 (198)
T 3mcw_A 12 KPLLLLIDMQQAVDDPSWGPRNH-PQAEQACAGLLQAWRARGLPLIHIRH 60 (198)
T ss_dssp CCEEEEECCBGGGGSGGGCCBSC-TTHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCEEEEEeCchhhcCCCccccCh-HHHHHHHHHHHHHHHHCCCEEEEEEE
Confidence 35699999876544321000111 22333456666788999999999988
No 178
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=43.96 E-value=96 Score=26.82 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccc
Q psy4520 111 LKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFG 190 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrg 190 (291)
..+.+..+|.+. .+-+++++|+-. .+ -|. ..+..+.+.|+.+++ .+..|++++|.-..
T Consensus 148 qkQrv~iAraL~--~~p~lllLDEPt--s~-----LD~-~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~----------- 205 (250)
T 2d2e_A 148 EKKRNEILQLLV--LEPTYAVLDETD--SG-----LDI-DALKVVARGVNAMRG-PNFGALVITHYQRI----------- 205 (250)
T ss_dssp HHHHHHHHHHHH--HCCSEEEEECGG--GT-----TCH-HHHHHHHHHHHHHCS-TTCEEEEECSSSGG-----------
T ss_pred HHHHHHHHHHHH--cCCCEEEEeCCC--cC-----CCH-HHHHHHHHHHHHHHh-cCCEEEEEecCHHH-----------
Confidence 345566666554 456899999984 21 122 445667888888866 48999999995332
Q ss_pred ccccccc-CccEEEEEc
Q psy4520 191 SAKATQE-SDNVLIIQQ 206 (291)
Q Consensus 191 Sg~IeQd-AD~Vi~L~R 206 (291)
++.- ||.|+++..
T Consensus 206 ---~~~~~~d~v~~l~~ 219 (250)
T 2d2e_A 206 ---LNYIQPDKVHVMMD 219 (250)
T ss_dssp ---GGTSCCSEEEEEET
T ss_pred ---HHHhcCCEEEEEEC
Confidence 3344 589988853
No 179
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3
Probab=43.81 E-value=37 Score=28.32 Aligned_cols=47 Identities=21% Similarity=0.014 Sum_probs=30.0
Q ss_pred CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 127 TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
.-+||||.-+-...... .......+-.-+..|-..|++.++||+.+.
T Consensus 20 ~ALlvID~Q~~f~~~~~-~~~~~~~~i~~i~~ll~~ar~~g~pVi~t~ 66 (199)
T 1j2r_A 20 TALVVIDLQEGILPFAG-GPHTADEVVNRAGKLAAKFRASGQPVFLVR 66 (199)
T ss_dssp EEEEEECCSTTTGGGCC-BSSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEecchhhhCCCc-ccccHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 45999998865543221 112223344445566667899999999887
No 180
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=43.26 E-value=27 Score=25.73 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=28.7
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
..+..++||+|.- |.+ .+.. ++++.|+......++||++++-.
T Consensus 43 ~~~~~dlvllD~~--~p~-----~~g~----~~~~~l~~~~~~~~~pii~~s~~ 85 (122)
T 3gl9_A 43 SEFTPDLIVLXIM--MPV-----MDGF----TVLKKLQEKEEWKRIPVIVLTAK 85 (122)
T ss_dssp TTBCCSEEEECSC--CSS-----SCHH----HHHHHHHTSTTTTTSCEEEEESC
T ss_pred HhcCCCEEEEecc--CCC-----CcHH----HHHHHHHhcccccCCCEEEEecC
Confidence 4577899999965 222 2322 35677776555578999998753
No 181
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=43.19 E-value=28 Score=27.02 Aligned_cols=55 Identities=11% Similarity=0.047 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 116 EAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 116 ~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
...+.+....+-.+||||+++.+...... .....+...|+.+..+.++.+++.+.
T Consensus 105 ~~~~~~~~~~~~~vl~iDe~~~l~~~~~~-----~~~~~~~~~l~~~~~~~~~~~i~~~~ 159 (195)
T 1jbk_A 105 GVLNDLAKQEGNVILFIDELHTMVGAGKA-----DGAMDAGNMLKPALARGELHCVGATT 159 (195)
T ss_dssp HHHHHHHHSTTTEEEEEETGGGGTT-----------CCCCHHHHHHHHHTTSCCEEEEEC
T ss_pred HHHHHHhhcCCCeEEEEeCHHHHhccCcc-----cchHHHHHHHHHhhccCCeEEEEeCC
Confidence 33333334455669999999877532211 01112344555666777888888775
No 182
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=42.80 E-value=81 Score=28.82 Aligned_cols=71 Identities=6% Similarity=0.019 Sum_probs=45.7
Q ss_pred CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec-cCCcCCCCcccccc-ccccccccCccEEEE
Q psy4520 127 TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRKENEQLTVNSVF-GSAKATQESDNVLII 204 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk~ek~p~lsDLr-gSg~IeQdAD~Vi~L 204 (291)
-.++|||+.+.+.... + ....+++..+-+-++.+|+.++++.| +..... ++++ ..-+|-+.|+..+++
T Consensus 263 ~~~i~iDEa~~~~~~~----~--~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~----~~~~~~~~~il~n~~~~i~l 332 (392)
T 4ag6_A 263 RTVLVVDEAWMLVDPQ----T--PQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLA----PEVQRYGQALLDNPTYKLLL 332 (392)
T ss_dssp TCEEEETTGGGGCCTT----C--THHHHHHHHHHHHGGGGTCEEEEEESCGGGGGS----TTTHHHHHHHHHSCSEEEEC
T ss_pred cEEEEEecHHHHhCcC----c--hHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhC----hhhHHHHHHHHHhhhhhhee
Confidence 4699999997765421 1 12244566666668999999999999 444321 0111 023677889999888
Q ss_pred Ecc
Q psy4520 205 QQK 207 (291)
Q Consensus 205 ~R~ 207 (291)
.-+
T Consensus 333 ~~~ 335 (392)
T 4ag6_A 333 AQG 335 (392)
T ss_dssp SCC
T ss_pred CCC
Confidence 644
No 183
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=42.79 E-value=15 Score=28.55 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhcCceEE
Q psy4520 153 DTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 153 ~~i~r~LK~~Ake~~VpVi 171 (291)
+.+-.+++..|+|+||||+
T Consensus 26 ~~~A~~I~e~A~e~gVPi~ 44 (98)
T 3c01_E 26 NQRALAVRAYAEKVGVPVI 44 (98)
T ss_dssp HHHHHHHHHHHHHHTCCEE
T ss_pred cHHHHHHHHHHHHcCCCee
Confidence 5678899999999999998
No 184
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=42.65 E-value=40 Score=24.70 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+.++.++.+ .....++||+|.- + .+ .+. -++++.||......++||++++.
T Consensus 35 ~~~~a~~~l----~~~~~dlvi~d~~-l-~~-----~~g----~~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 35 DGASGLQQA----LAHPPDVLISDVN-M-DG-----MDG----YALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp SHHHHHHHH----HHSCCSEEEECSS-C-SS-----SCH----HHHHHHHHHSTTTTTCCEEEEES
T ss_pred CHHHHHHHH----hcCCCCEEEEeCC-C-CC-----CCH----HHHHHHHHhCCccCCCCEEEEeC
Confidence 445554433 4467899999975 2 21 122 23566666654455899999976
No 185
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=42.30 E-value=29 Score=25.66 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=27.5
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.....++||+|.- |.+ .+-. ++++.||......++||++++..
T Consensus 48 ~~~~~dlvi~D~~--~p~-----~~g~----~~~~~lr~~~~~~~~pii~~s~~ 90 (129)
T 3h1g_A 48 ANADTKVLITDWN--MPE-----MNGL----DLVKKVRSDSRFKEIPIIMITAE 90 (129)
T ss_dssp HCTTCCEEEECSC--CSS-----SCHH----HHHHHHHTSTTCTTCCEEEEESC
T ss_pred hCCCCCEEEEeCC--CCC-----CCHH----HHHHHHHhcCCCCCCeEEEEeCC
Confidence 3446899999975 222 1322 36677776555568999998763
No 186
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=42.25 E-value=1.5e+02 Score=25.65 Aligned_cols=71 Identities=13% Similarity=0.240 Sum_probs=45.5
Q ss_pred CCHHH--HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccc
Q psy4520 109 QPLKL--VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVN 186 (291)
Q Consensus 109 ~~i~~--i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~ls 186 (291)
.|--+ .+..+|. .-.+-+++++|+-.- + -|. .....+.+.|+.++ + +..|++++|.-..
T Consensus 146 LSgGq~qRv~iAra--L~~~p~lllLDEPts--~-----LD~-~~~~~i~~~l~~~~-~-g~tviivtH~~~~------- 206 (247)
T 2ff7_A 146 LSGGQRQRIAIARA--LVNNPKILIFDEATS--A-----LDY-ESEHVIMRNMHKIC-K-GRTVIIIAHRLST------- 206 (247)
T ss_dssp CCHHHHHHHHHHHH--HTTCCSEEEECCCCS--C-----CCH-HHHHHHHHHHHHHH-T-TSEEEEECSSGGG-------
T ss_pred CCHHHHHHHHHHHH--HhcCCCEEEEeCCcc--c-----CCH-HHHHHHHHHHHHHc-C-CCEEEEEeCCHHH-------
Confidence 44443 4444444 346678999999831 1 122 34566788888884 3 8999999995221
Q ss_pred cccccccccccCccEEEEEc
Q psy4520 187 SVFGSAKATQESDNVLIIQQ 206 (291)
Q Consensus 187 DLrgSg~IeQdAD~Vi~L~R 206 (291)
++. ||.|+++..
T Consensus 207 -------~~~-~d~v~~l~~ 218 (247)
T 2ff7_A 207 -------VKN-ADRIIVMEK 218 (247)
T ss_dssp -------GTT-SSEEEEEET
T ss_pred -------HHh-CCEEEEEEC
Confidence 334 999999964
No 187
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=41.97 E-value=8.9 Score=31.41 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=33.8
Q ss_pred eeeeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 238 ATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 238 l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
..|.+.|+.|++ ...+|.++.++|.+.||.++.-.|.+-+-||
T Consensus 60 ~~~~~~Cy~~~~-~~~~w~~A~~~C~~~gg~La~i~s~~e~~~l 102 (177)
T 1pwb_A 60 QSVGEKIFKTAG-FVKPFTEAQLLCTQAGGQLASPRSAAENAAL 102 (177)
T ss_dssp EEETTEEEEEEE-EEEEHHHHHHHHHHTTSEECCCCSHHHHHHH
T ss_pred EEECCEEEEEcC-CccCHHHHHHHHHhcCCEEcccCCHHHHHHH
Confidence 345577887764 5789999999999999999987777655444
No 188
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=41.65 E-value=6.8 Score=31.98 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=32.5
Q ss_pred eeceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 240 f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
|.+.|+.|++ ...+|.++.++|.+.||.++.-.|.+-+-||
T Consensus 54 ~~~~Cy~~~~-~~~tw~~A~~~C~~~g~~La~i~s~~e~~~l 94 (168)
T 1buu_A 54 SGKKFFVTNH-ERMPFSKVKALCSELRGTVAIPRNAEENKAI 94 (168)
T ss_dssp TTSCEEEEEE-EEECHHHHHHHHHHTTSEECCCCSHHHHHHH
T ss_pred ECCEEEEEeC-CccCHHHHHHHHHhCCCEEeeeCCHHHHHHH
Confidence 3467877764 5689999999999999999987777655554
No 189
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=41.18 E-value=1.2e+02 Score=32.14 Aligned_cols=84 Identities=13% Similarity=0.089 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC----CCCccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN----EQLTVNSV 188 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e----k~p~lsDL 188 (291)
++...++.+..-..-.+|++|+.. . +.|-.....-+..-++.++++.++.|+++.|-.... +.|.+.+
T Consensus 728 e~~~~a~il~~a~~~sLlLLDEp~--~-----GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~n- 799 (934)
T 3thx_A 728 EMLETASILRSATKDSLIIIDELG--R-----GTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNN- 799 (934)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESCS--C-----SSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEE-
T ss_pred HHHHHHHHHHhccCCcEEEEeCCC--C-----CCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEe-
Confidence 344555554444567899999993 1 223333333334556777778899999999953322 3444432
Q ss_pred ccccccc--ccCccEEEEEcc
Q psy4520 189 FGSAKAT--QESDNVLIIQQK 207 (291)
Q Consensus 189 rgSg~Ie--QdAD~Vi~L~R~ 207 (291)
|++. -+.+.+.++|+-
T Consensus 800 ---g~v~~~~~~~~l~~~y~l 817 (934)
T 3thx_A 800 ---LHVTALTTEETLTMLYQV 817 (934)
T ss_dssp ---EEEEEEEETTEEEEEEEE
T ss_pred ---eEEEEEecCCcEEEEEEE
Confidence 3332 355678888874
No 190
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=41.08 E-value=16 Score=28.25 Aligned_cols=20 Identities=10% Similarity=-0.021 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhcCceEE
Q psy4520 152 QDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 152 ~~~i~r~LK~~Ake~~VpVi 171 (291)
.+.+-.+++..|+|+||||+
T Consensus 40 ~~~~A~~I~~~A~e~gVPi~ 59 (97)
T 3t7y_A 40 VNLRAKRIIAEAEKYGVPIM 59 (97)
T ss_dssp EHHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHHcCCeEE
Confidence 36688899999999999998
No 191
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=41.03 E-value=19 Score=36.20 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=32.0
Q ss_pred EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec-cC
Q psy4520 129 HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PR 177 (291)
Q Consensus 129 lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pR 177 (291)
+||||+++.+.... . ..+...+..|-+.++..|||+++.+| |.
T Consensus 346 vvVIDE~~~L~~~~----~--~~~~~~L~~Iar~GRa~GIhLIlaTQRPs 389 (574)
T 2iut_A 346 VVVVDEFADMMMIV----G--KKVEELIARIAQKARAAGIHLILATQRPS 389 (574)
T ss_dssp EEEESCCTTHHHHT----C--HHHHHHHHHHHHHCTTTTEEEEEEESCCC
T ss_pred EEEEeCHHHHhhhh----h--HHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence 79999997443211 1 23556788888999999999999998 54
No 192
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=40.93 E-value=46 Score=30.03 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+++.+.+++. .++.++|++.+.+-..+.- .+ +++|.++|+++|+.|++
T Consensus 174 d~~~le~~l~----~~~~~~vi~~~~~nptG~~---~~--------l~~l~~la~~~~~~li~ 221 (409)
T 3kki_A 174 NCDHLRMLIQ----RHGPGIIVVDSIYSTLGTI---AP--------LAELVNISKEFGCALLV 221 (409)
T ss_dssp CHHHHHHHHH----HHCSCEEEEESBCTTTCCB---CC--------HHHHHHHHHHHTCEEEE
T ss_pred CHHHHHHHHH----hcCCeEEEECCCCCCCCCc---CC--------HHHHHHHHHHcCCEEEE
Confidence 4666555443 3456999999987543321 12 67899999999998874
No 193
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=40.88 E-value=51 Score=28.99 Aligned_cols=59 Identities=7% Similarity=0.065 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHH-----HHHHHHHHHHHHHhcCceEEEEe
Q psy4520 111 LKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYM-----QDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~-----~~~i~r~LK~~Ake~~VpVilvs 174 (291)
++.+.+.++.+ ...|+++||.=++ .+.+-.. ..... -+...+.|+.+|++++|+|++=+
T Consensus 39 l~~~~~~i~~A-~~~gadlvvfPE~-~l~gy~~---~~~~~~a~~~~~~~~~~l~~la~~~~i~iv~G~ 102 (281)
T 3p8k_A 39 ETQITQWFEKN-MNAEVDVVVLPEM-WNNGYDL---EHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGS 102 (281)
T ss_dssp HHHHHHHHHHH-CCTTCCEEECCSS-TTTTTCG---GGHHHHSEETTHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHH-HhCCCcEEEcCCC-ccCCCCh---hHHHHhhhccCcHHHHHHHHHHhhCCeEEEEee
Confidence 34444444443 3578999998888 3333221 11111 15689999999999999988654
No 194
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=40.85 E-value=22 Score=35.10 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=32.1
Q ss_pred EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec-cC
Q psy4520 129 HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PR 177 (291)
Q Consensus 129 lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pR 177 (291)
+||||+++-+... ......+.+..|.+.++..|||+++.+| |.
T Consensus 300 vlvIDE~~~ll~~------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMMT------VGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHHH------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHhh------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 7899999644321 1234566788888899999999999999 55
No 195
>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, CY hydrolase; 1.60A {Pseudomonas syringae PV}
Probab=40.66 E-value=25 Score=30.53 Aligned_cols=49 Identities=14% Similarity=0.071 Sum_probs=32.2
Q ss_pred CcEEEEeccccccCCC-CCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 127 TGHVIIDNVQFMLGLS-DSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 127 v~lviIDyLqlm~~~~-~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.-+||||.-+-..... .........+-.-+..|-..|++.++||+.+.|
T Consensus 23 tALlvID~Q~~f~~~~g~l~~~~~~~vv~~i~~Ll~~ar~~g~pVi~t~~ 72 (233)
T 3irv_A 23 TAVIVVDMQKVFCEPTGALYVKSTADIVQPIQKLLQAARAAQVMVIYLRH 72 (233)
T ss_dssp EEEEEECCBHHHHSTTSTTCCGGGGGGHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred eEEEEECCchhhhCCCCcccCCCHHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 4599999876554321 111122333445567777889999999999988
No 196
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=40.63 E-value=81 Score=27.68 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
..+..+|.+. .+-+++++|+-.- + -|. ..+..+.+.|+.++++ +..|++++|.-..
T Consensus 171 QRv~iAraL~--~~p~lLlLDEPts--~-----LD~-~~~~~l~~~l~~l~~~-g~tviivtHd~~~------------- 226 (267)
T 2zu0_C 171 KRNDILQMAV--LEPELCILDESDS--G-----LDI-DALKVVADGVNSLRDG-KRSFIIVTHYQRI------------- 226 (267)
T ss_dssp HHHHHHHHHH--HCCSEEEEESTTT--T-----CCH-HHHHHHHHHHHTTCCS-SCEEEEECSSGGG-------------
T ss_pred HHHHHHHHHH--hCCCEEEEeCCCC--C-----CCH-HHHHHHHHHHHHHHhc-CCEEEEEeeCHHH-------------
Confidence 4455555543 4678999999831 1 222 4456678888888655 9999999994332
Q ss_pred ccccc-CccEEEEEc
Q psy4520 193 KATQE-SDNVLIIQQ 206 (291)
Q Consensus 193 ~IeQd-AD~Vi~L~R 206 (291)
++.- ||.|+++..
T Consensus 227 -~~~~~~d~v~~l~~ 240 (267)
T 2zu0_C 227 -LDYIKPDYVHVLYQ 240 (267)
T ss_dssp -GGTSCCSEEEEEET
T ss_pred -HHhhcCCEEEEEEC
Confidence 3343 799998853
No 197
>2msb_A Mannose-binding protein-A; lectin; HET: BMA MAN; 1.70A {Rattus rattus} SCOP: d.169.1.1 PDB: 1msb_A 1ytt_A*
Probab=40.54 E-value=7.2 Score=29.22 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=30.6
Q ss_pred ceEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 242 GKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 242 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
+.++.|++ ...++.++.++|.+.||.|+.-.|++-+-||
T Consensus 3 ~~Cy~~~~-~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 41 (115)
T 2msb_A 3 KKFFVTNH-ERMPFSKVKALCSELRGTVAIPRNAEENKAI 41 (115)
T ss_dssp -CEEEEEE-EEECHHHHHHHHHHTTCEECCCSSHHHHHHH
T ss_pred CEEEEEeC-CCcCHHHHHHHHHhCCCEEeccCCHHHHHHH
Confidence 45666653 5688999999999999999988887766554
No 198
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=40.54 E-value=21 Score=27.90 Aligned_cols=54 Identities=9% Similarity=0.061 Sum_probs=31.7
Q ss_pred HHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 118 VEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 118 ~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
...+....+-.+||||+++.+....... . .+..+...|+.+..+.++.|++.+.
T Consensus 107 ~~~~~~~~~~~vl~iDe~~~l~~~~~~~-~---~~~~~~~~l~~~~~~~~~~ii~~~~ 160 (187)
T 2p65_A 107 LKEVQDAEGQVVMFIDEIHTVVGAGAVA-E---GALDAGNILKPMLARGELRCIGATT 160 (187)
T ss_dssp HHHHHHTTTSEEEEETTGGGGSSSSSSC-T---TSCCTHHHHHHHHHTTCSCEEEEEC
T ss_pred HHHHHhcCCceEEEEeCHHHhccccccc-c---cchHHHHHHHHHHhcCCeeEEEecC
Confidence 3343333456799999998876322100 0 0122455566666778888887765
No 199
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=40.27 E-value=35 Score=30.14 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCcc---H--HHHHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 111 LKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALD---R--FYMQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~---r--~~~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
++.+.+.++.+ ...|+++||.=++- +.+-.. .+ . ....+...+.|+.+|++++|+|++=.
T Consensus 39 ~~~~~~~i~~A-~~~gadlvvfPE~~-l~gy~~--~d~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~G~ 103 (283)
T 3hkx_A 39 LDLIDDAAARA-SEQGAQLLLTPELF-GFGYVP--SQICAQVSAEQVDAARSRLRGIARDRGIALVWSL 103 (283)
T ss_dssp HHHHHHHHHHH-HHTTCSEEECCTTG-GGCSCH--HHHHHHCCHHHHHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHH-HHCCCCEEEcCCCc-ccCCCh--HHHHHHhccccCCHHHHHHHHHHHHhCCEEEEEE
Confidence 44455555554 34689999988883 343221 11 0 01235789999999999999988543
No 200
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=40.08 E-value=69 Score=29.26 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
..+..++.+....+-+++|+|+.. .+ -| ...+..+...|+.+++ ++-|++++|...
T Consensus 302 qrl~lA~~l~~~~~~~~LlLDEpt--~~-----LD-~~~~~~l~~~L~~l~~--~~~vi~itH~~~-------------- 357 (415)
T 4aby_A 302 SRVMLAVSTVLGADTPSVVFDEVD--AG-----IG-GAAAIAVAEQLSRLAD--TRQVLVVTHLAQ-------------- 357 (415)
T ss_dssp HHHHHHHHHHHCCSSSEEEESSTT--TT-----CC-HHHHHHHHHHHHHHTT--TSEEEEECSCHH--------------
T ss_pred HHHHHHHHHHhCCCCCEEEEECCC--CC-----CC-HHHHHHHHHHHHHHhC--CCEEEEEeCcHH--------------
Confidence 344455544333212899999983 21 12 2445678888898883 899999999533
Q ss_pred cccccCccEEEEEcc
Q psy4520 193 KATQESDNVLIIQQK 207 (291)
Q Consensus 193 ~IeQdAD~Vi~L~R~ 207 (291)
+...||.+++|++.
T Consensus 358 -~~~~~d~i~~l~k~ 371 (415)
T 4aby_A 358 -IAARAHHHYKVEKQ 371 (415)
T ss_dssp -HHTTCSEEEEEEEE
T ss_pred -HHhhcCeEEEEEEe
Confidence 22348999999754
No 201
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=40.05 E-value=68 Score=28.46 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=38.1
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLII 204 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L 204 (291)
..+++|+||+.|+.. + +.++++.| .+.+++|++--+...=..+| .-+|..+--.||.|.=+
T Consensus 89 ~~~dvViIDEaQF~~-------~----v~el~~~l----~~~gi~VI~~GL~~DF~~~~----F~~~~~Ll~~AD~Vtel 149 (234)
T 2orv_A 89 LGVAVIGIDEGQFFP-------D----IVEFCEAM----ANAGKTVIVAALDGTFQRKP----FGAILNLVPLAESVVKL 149 (234)
T ss_dssp TTCSEEEESSGGGCT-------T----HHHHHHHH----HHTTCEEEEECCSBCTTSSB----CTTGGGGGGGCSEEEEC
T ss_pred ccCCEEEEEchhhhh-------h----HHHHHHHH----HhCCCEEEEEecccccccCC----cccHHHHHHhcccEEee
Confidence 458999999999862 1 33344444 34899999876532221222 23455566678888765
Q ss_pred E
Q psy4520 205 Q 205 (291)
Q Consensus 205 ~ 205 (291)
.
T Consensus 150 k 150 (234)
T 2orv_A 150 T 150 (234)
T ss_dssp C
T ss_pred e
Confidence 3
No 202
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=40.05 E-value=22 Score=27.94 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCceEEEEec-cCCcCCCCccccccccccccccCccEEEEEc
Q psy4520 156 IQEFRAFASRSHCHVTLVIH-PRKENEQLTVNSVFGSAKATQESDNVLIIQQ 206 (291)
Q Consensus 156 ~r~LK~~Ake~~VpVilvsh-pRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R 206 (291)
-..|+..|+++|+.|-+=.| +-..+..++-.|+ ..||.||+..-
T Consensus 22 AeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I-------~~AD~VIia~d 66 (106)
T 2m1z_A 22 AQALKKGAKKMGNLIKVETQGATGIENELTEKDV-------NIGEVVIFAVD 66 (106)
T ss_dssp HHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHH-------HHCSEEEEEES
T ss_pred HHHHHHHHHHCCCEEEEEEecCccccCCCCHHHH-------hhCCEEEEecc
Confidence 67899999999999999988 5555566666776 58999999864
No 203
>5rub_A Rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase); lyase(carbon-carbon); 1.70A {Rhodospirillum rubrum} SCOP: c.1.14.1 d.58.9.1 PDB: 1rus_A 2rus_A 9rub_A* 1rba_A
Probab=39.06 E-value=1e+02 Score=30.33 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=37.0
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCC----CcEEEEecc
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYD----TGHVIIDNV 135 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~g----v~lviIDyL 135 (291)
+.+.+|.++=.+..+|..+-++ -+.+++++++++++...| ...|+||.+
T Consensus 237 eAi~rA~~eTGe~k~y~~NITa-~~~~eM~~RAe~a~e~~G~~~g~~~vMvd~~ 289 (490)
T 5rub_A 237 DAMRRAQDETGEAKLFSANITA-DDPFEIIARGEYVLETFGENASHVALLVDGY 289 (490)
T ss_dssp HHHHHHHHHHSSCCEEEEECCC-SSHHHHHHHHHHHHHHHGGGGGGEEEEEETT
T ss_pred HHHHHHHHhhCCceeEEeccCC-CCHHHHHHHHHHHHHhcCCccCceEEEEccc
Confidence 5556677777788899888765 269999999999877534 447888965
No 204
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=38.70 E-value=1.1e+02 Score=26.07 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=43.0
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVL 202 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi 202 (291)
.-.+-+++++|+-. .+ -|. .....+.+.|+.++++ +..|++++|.-.. + +.||.|+
T Consensus 155 l~~~p~lllLDEPt--~~-----LD~-~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~--------------~-~~~d~v~ 210 (224)
T 2pcj_A 155 LANEPILLFADEPT--GN-----LDS-ANTKRVMDIFLKINEG-GTSIVMVTHEREL--------------A-ELTHRTL 210 (224)
T ss_dssp TTTCCSEEEEESTT--TT-----CCH-HHHHHHHHHHHHHHHT-TCEEEEECSCHHH--------------H-TTSSEEE
T ss_pred HHcCCCEEEEeCCC--CC-----CCH-HHHHHHHHHHHHHHHC-CCEEEEEcCCHHH--------------H-HhCCEEE
Confidence 45678999999983 11 222 4456788889999888 9999999994221 2 4689999
Q ss_pred EEEc
Q psy4520 203 IIQQ 206 (291)
Q Consensus 203 ~L~R 206 (291)
++..
T Consensus 211 ~l~~ 214 (224)
T 2pcj_A 211 EMKD 214 (224)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8853
No 205
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=38.60 E-value=45 Score=25.55 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=28.6
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.....++||+|.- + .+ .+. -++++.|+......++||++++-.
T Consensus 48 ~~~~~dlii~D~~-l-~~-----~~g----~~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 48 SLTRPDLIISDVL-M-PE-----MDG----YALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp TTCCCSEEEEESC-C-SS-----SCH----HHHHHHHHHSTTTTTSCEEEEECC
T ss_pred HhCCCCEEEEeCC-C-CC-----CCH----HHHHHHHHhCCCcCCCCEEEEECC
Confidence 4567999999975 2 22 122 236677776555578999998753
No 206
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=38.51 E-value=80 Score=27.55 Aligned_cols=55 Identities=9% Similarity=-0.012 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 107 GPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 107 g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+..+++.+.++++.......+++|++.+.+-..+.- .+ +++|..+|+++|++|++
T Consensus 128 ~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~---~~--------~~~i~~~~~~~~~~li~ 182 (371)
T 2e7j_A 128 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNL---PD--------VKKIAKVCSEYDVPLLV 182 (371)
T ss_dssp CCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCC---CC--------HHHHHHHHHTTTCCEEE
T ss_pred CCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCccc---CC--------HHHHHHHHHHcCCeEEE
Confidence 446788887766542211468899999986433321 12 37888999999998874
No 207
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=38.38 E-value=95 Score=30.97 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....+|. .-.+-+++++|+=.- +.| ...+..+.+.|+.++++.+..|++++|....
T Consensus 479 Rv~iAra--L~~~p~lLlLDEPt~-------~LD-~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~-------------- 534 (607)
T 3bk7_A 479 RVAIAAT--LLRDADIYLLDEPSA-------YLD-VEQRLAVSRAIRHLMEKNEKTALVVEHDVLM-------------- 534 (607)
T ss_dssp HHHHHHH--HTSCCSEEEEECTTT-------TCC-HHHHHHHHHHHHHHHHHTTCEEEEECSCHHH--------------
T ss_pred HHHHHHH--HHhCCCEEEEeCCcc-------CCC-HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--------------
Confidence 3344443 456789999999831 122 2446678999999999999999999995442
Q ss_pred ccccCccEEEEE
Q psy4520 194 ATQESDNVLIIQ 205 (291)
Q Consensus 194 IeQdAD~Vi~L~ 205 (291)
+..-||.|+++.
T Consensus 535 ~~~~adrv~vl~ 546 (607)
T 3bk7_A 535 IDYVSDRLIVFE 546 (607)
T ss_dssp HHHHCSEEEEEE
T ss_pred HHHhCCEEEEEc
Confidence 556789999996
No 208
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=38.04 E-value=1.5e+02 Score=25.41 Aligned_cols=18 Identities=11% Similarity=-0.127 Sum_probs=15.0
Q ss_pred HHHHHHHcCCeEEEEecc
Q psy4520 4 YSLDLALQGVTTLWGSFE 21 (291)
Q Consensus 4 ~al~la~qG~~v~~fSlE 21 (291)
+++.++.+|++|+++.+=
T Consensus 48 lalRA~g~G~rV~~vQF~ 65 (196)
T 1g5t_A 48 TAARAVGHGKNVGVVQFI 65 (196)
T ss_dssp HHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHCCCeEEEEEee
Confidence 577888899999999664
No 209
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=37.72 E-value=41 Score=25.52 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=29.8
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccC
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR 177 (291)
.....++||+|.- + .+ .+- -++++.||......++||++++...
T Consensus 56 ~~~~~dliilD~~-l-~~-----~~g----~~~~~~lr~~~~~~~~pii~~t~~~ 99 (152)
T 3heb_A 56 SAGRAQLVLLDLN-L-PD-----MTG----IDILKLVKENPHTRRSPVVILTTTD 99 (152)
T ss_dssp GTTCBEEEEECSB-C-SS-----SBH----HHHHHHHHHSTTTTTSCEEEEESCC
T ss_pred ccCCCCEEEEeCC-C-CC-----CcH----HHHHHHHHhcccccCCCEEEEecCC
Confidence 3567899999975 2 21 232 2367777776667799999987643
No 210
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=37.69 E-value=98 Score=26.81 Aligned_cols=59 Identities=7% Similarity=0.064 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.+.+++.+.++.+.....++.|||.= .+.+ .+ .....++-+.|++|.++.+.||++..+
T Consensus 29 ~~~~~l~~~l~~a~~d~~v~~ivL~~----~s~G---g~-~~~~~~i~~~l~~~~~~~~kPVia~v~ 87 (240)
T 3rst_A 29 YNHRTFLKNLERAKDDKTVKGIVLKV----NSPG---GG-VYESAEIHKKLEEIKKETKKPIYVSMG 87 (240)
T ss_dssp CCHHHHHHHHHHHHHCTTEEEEEEEE----EECC---BC-HHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred cCHHHHHHHHHHHHhCCCcEEEEEEe----cCCC---CC-HHHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 57899999999988888899888742 1222 12 123456777888887778999998766
No 211
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=36.94 E-value=74 Score=26.01 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=27.8
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh--cCceEEEEecc
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR--SHCHVTLVIHP 176 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake--~~VpVilvshp 176 (291)
...++||+|.- |.+ .+- -++++.||..... .++||++++-.
T Consensus 118 ~~~dlillD~~--lp~-----~~G----~el~~~lr~~~~~~~~~~piI~ls~~ 160 (206)
T 3mm4_A 118 LPFDYIFMDCQ--MPE-----MDG----YEATREIRKVEKSYGVRTPIIAVSGH 160 (206)
T ss_dssp CSCSEEEEESC--CSS-----SCH----HHHHHHHHHHHHTTTCCCCEEEEESS
T ss_pred CCCCEEEEcCC--CCC-----CCH----HHHHHHHHhhhhhcCCCCcEEEEECC
Confidence 46899999976 322 132 2367777776554 78999998753
No 212
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=36.93 E-value=74 Score=24.06 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+.++.++.+ ..+..++||+|.- + .+ .+. -++++.|+. ...++||++++-.
T Consensus 46 ~~~~a~~~l----~~~~~dlvi~D~~-l-~~-----~~g----~~~~~~l~~--~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 46 DATQALQLL----ASREVDLVISAAH-L-PQ-----MDG----PTLLARIHQ--QYPSTTRILLTGD 95 (153)
T ss_dssp SHHHHHHHH----HHSCCSEEEEESC-C-SS-----SCH----HHHHHHHHH--HCTTSEEEEECCC
T ss_pred CHHHHHHHH----HcCCCCEEEEeCC-C-Cc-----CcH----HHHHHHHHh--HCCCCeEEEEECC
Confidence 455555443 4567999999986 2 22 122 235666666 3458999988753
No 213
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=36.63 E-value=1.1e+02 Score=26.40 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh-cCceEEEEecc
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR-SHCHVTLVIHP 176 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake-~~VpVilvshp 176 (291)
.++.++.+.......+.+--+||||++|.+...... .+ ..+...|+.+... .++.|++...+
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~-~~-----~~~~~~L~~~~~~~~~~~~il~g~~ 173 (350)
T 2qen_A 111 LSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR-GG-----KELLALFAYAYDSLPNLKIILTGSE 173 (350)
T ss_dssp CCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT-TT-----HHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred chHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc-ch-----hhHHHHHHHHHHhcCCeEEEEECCc
Confidence 356777776665544445458999999987541100 01 2355666666655 47888877543
No 214
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=36.43 E-value=1.1e+02 Score=29.99 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGS 191 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgS 191 (291)
.+..+.++.+ -.+-+++|+|+=.- +-|. ..+..+.+-|+.++++ ++.|++++|.+..
T Consensus 164 kQRv~iAraL--~~~P~lLlLDEPTs-------~LD~-~~~~~l~~~L~~l~~~-g~tvi~vsHd~~~------------ 220 (538)
T 1yqt_A 164 LQRVAIAAAL--LRNATFYFFDEPSS-------YLDI-RQRLNAARAIRRLSEE-GKSVLVVEHDLAV------------ 220 (538)
T ss_dssp HHHHHHHHHH--HSCCSEEEEESTTT-------TCCH-HHHHHHHHHHHHHHHT-TCEEEEECSCHHH------------
T ss_pred HHHHHHHHHH--hcCCCEEEEECCcc-------cCCH-HHHHHHHHHHHHHHhc-CCEEEEEeCCHHH------------
Confidence 3444555443 46789999998731 1222 4456788888888774 9999999996543
Q ss_pred ccccccCccEEEEE
Q psy4520 192 AKATQESDNVLIIQ 205 (291)
Q Consensus 192 g~IeQdAD~Vi~L~ 205 (291)
+.+-||.|+++.
T Consensus 221 --~~~~~dri~vl~ 232 (538)
T 1yqt_A 221 --LDYLSDIIHVVY 232 (538)
T ss_dssp --HHHHCSEEEEEE
T ss_pred --HHHhCCEEEEEc
Confidence 445567777664
No 215
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=36.43 E-value=72 Score=28.82 Aligned_cols=66 Identities=9% Similarity=-0.054 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecccc-ccCCCCCCccH--HHHH-HHHHHHHHHHHHhcCceEEEEeccC
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQF-MLGLSDSALDR--FYMQ-DTIIQEFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLql-m~~~~~~~~~r--~~~~-~~i~r~LK~~Ake~~VpVilvshpR 177 (291)
++.....+.++..+|+.+.+||.=.. .....+..... ...+ ....+.|..+|+++|+..++..|..
T Consensus 61 ~e~~~~~~~~a~~lgi~~~vv~~~~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~ 130 (308)
T 2dpl_A 61 GEPEFVVKTFRDEFGMNLHYVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIA 130 (308)
T ss_dssp THHHHHHHHHTTTTCCEEEEEECHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCC
Confidence 44444444455689999999985321 11111111111 1111 2245678899999999999998854
No 216
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=36.26 E-value=80 Score=23.22 Aligned_cols=57 Identities=14% Similarity=0.101 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHH-hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHH--HhcCceEEEEeccC
Q psy4520 110 PLKLVMEAVEHAMY-VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFA--SRSHCHVTLVIHPR 177 (291)
Q Consensus 110 ~i~~i~~~~r~~~~-~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~A--ke~~VpVilvshpR 177 (291)
+.++.++.++.... ....++||+|.- |.+ .+. -++++.|+... ...++||++++...
T Consensus 43 ~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~-----~~g----~~~~~~l~~~~~~~~~~~~ii~~t~~~ 102 (146)
T 3ilh_A 43 SGNAAINKLNELYAAGRWPSIICIDIN--MPG-----ING----WELIDLFKQHFQPMKNKSIVCLLSSSL 102 (146)
T ss_dssp SHHHHHHHHHHHHTSSCCCSEEEEESS--CSS-----SCH----HHHHHHHHHHCGGGTTTCEEEEECSSC
T ss_pred CHHHHHHHHHHhhccCCCCCEEEEcCC--CCC-----CCH----HHHHHHHHHhhhhccCCCeEEEEeCCC
Confidence 45665554443211 166899999976 222 122 24677777754 56789999887533
No 217
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=35.42 E-value=57 Score=23.98 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+.++.++.+ .....++||+|.- + .+ .+. -++++.|+......++||++++-.
T Consensus 42 ~~~~a~~~l----~~~~~dlii~d~~-l-~~-----~~g----~~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 42 NPFDAGDLL----HTVKPDVVMLDLM-M-VG-----MDG----FSICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp SHHHHHHHH----HHTCCSEEEEETT-C-TT-----SCH----HHHHHHHHTSTTTTTSEEEEEESS
T ss_pred CHHHHHHHH----HhcCCCEEEEecc-c-CC-----CcH----HHHHHHHHhCccccCCcEEEEeCC
Confidence 345554433 3456899999975 2 21 122 236677776545678999998753
No 218
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=35.27 E-value=65 Score=23.94 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+..+.++.+ .....++||+|.- + .+ .+.. ++++.|+......++||++++.
T Consensus 35 ~~~~al~~l----~~~~~dlvi~D~~-l-~~-----~~g~----~~~~~l~~~~~~~~~~ii~ls~ 85 (138)
T 3c3m_A 35 SGEECLEAL----NATPPDLVLLDIM-M-EP-----MDGW----ETLERIKTDPATRDIPVLMLTA 85 (138)
T ss_dssp SHHHHHHHH----HHSCCSEEEEESC-C-SS-----SCHH----HHHHHHHHSTTTTTSCEEEEES
T ss_pred CHHHHHHHH----hccCCCEEEEeCC-C-CC-----CCHH----HHHHHHHcCcccCCCCEEEEEC
Confidence 345544433 3456899999976 2 21 1222 3566776644445899998875
No 219
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=34.94 E-value=64 Score=29.99 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=40.1
Q ss_pred CCCeEEEcCCCCCCHHHHHHHHHHHHHhCCC--cEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHH----HhcCceE
Q psy4520 97 TLPMYFLTFHGPQPLKLVMEAVEHAMYVYDT--GHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFA----SRSHCHV 170 (291)
Q Consensus 97 ~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv--~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~A----ke~~VpV 170 (291)
..|+-+.-. .+++.+ ...-....++|+ +-||||++-.-.+. + .+.-=++++.|+.+| +.++.||
T Consensus 180 g~~vVlmh~---~d~~~~-~~l~~~a~~~GI~~e~IIlDPg~g~fgk-----~-~e~~l~~l~~ir~~al~~~~~lg~Pv 249 (323)
T 4djd_D 180 KHNIIARSP---LDINIC-KQLNILINEMNLPLDHIVIDPSIGGLGY-----G-IEYSFSIMERIRLGALQGDKMLSMPV 249 (323)
T ss_dssp TCEEEEECS---SCHHHH-HHHHHHHHTTTCCGGGEEEECCCCCTTT-----T-HHHHHHHHHHHHHHHHHTCGGGCSCB
T ss_pred CCeEEEEcc---chHHHH-HHHHHHHHHcCCCHHHEEEeCCCccccC-----C-HHHHHHHHHHHHHHhhcccccCCCCE
Confidence 566666532 134444 333344578999 78999999321211 1 122344788888865 5899998
Q ss_pred EE
Q psy4520 171 TL 172 (291)
Q Consensus 171 il 172 (291)
++
T Consensus 250 L~ 251 (323)
T 4djd_D 250 IC 251 (323)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 220
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=34.90 E-value=1.1e+02 Score=28.20 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=40.0
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLII 204 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L 204 (291)
.+.+++++|+-. .+ .|. ..+..+...|+.+++ .+..|++++|... ....||.|+++
T Consensus 302 ~~p~~lllDEpt--~~-----LD~-~~~~~~~~~l~~l~~-~g~tvi~itH~~~---------------~~~~~d~~~~l 357 (365)
T 3qf7_A 302 GRLDAFFIDEGF--SS-----LDT-ENKEKIASVLKELER-LNKVIVFITHDRE---------------FSEAFDRKLRI 357 (365)
T ss_dssp TTCCEEEEESCC--TT-----SCH-HHHHHHHHHHHGGGG-SSSEEEEEESCHH---------------HHTTCSCEEEE
T ss_pred CCCCEEEEeCCC--cc-----CCH-HHHHHHHHHHHHHHh-CCCEEEEEecchH---------------HHHhCCEEEEE
Confidence 578999999983 11 122 345667888888865 4999999999533 12457888887
Q ss_pred Ec
Q psy4520 205 QQ 206 (291)
Q Consensus 205 ~R 206 (291)
..
T Consensus 358 ~~ 359 (365)
T 3qf7_A 358 TG 359 (365)
T ss_dssp ET
T ss_pred EC
Confidence 53
No 221
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=34.74 E-value=1.1e+02 Score=30.43 Aligned_cols=68 Identities=15% Similarity=0.061 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
+..+.++.+ -.+-+++++|+-.- + -|. ..+..+.+-|+.++++ +..|++++|....
T Consensus 235 QRvaIAraL--~~~P~lLlLDEPTs--~-----LD~-~~~~~l~~~L~~l~~~-g~tvIivsHdl~~------------- 290 (607)
T 3bk7_A 235 QRVAIAAAL--LRKAHFYFFDEPSS--Y-----LDI-RQRLKVARVIRRLANE-GKAVLVVEHDLAV------------- 290 (607)
T ss_dssp HHHHHHHHH--HSCCSEEEEECTTT--T-----CCH-HHHHHHHHHHHHHHHT-TCEEEEECSCHHH-------------
T ss_pred HHHHHHHHH--hcCCCEEEEECCcc--c-----CCH-HHHHHHHHHHHHHHhc-CCEEEEEecChHH-------------
Confidence 444555543 46789999998831 1 222 3456678888888775 9999999996443
Q ss_pred cccccCccEEEEE
Q psy4520 193 KATQESDNVLIIQ 205 (291)
Q Consensus 193 ~IeQdAD~Vi~L~ 205 (291)
+.+-||.|++++
T Consensus 291 -~~~~adri~vl~ 302 (607)
T 3bk7_A 291 -LDYLSDVIHVVY 302 (607)
T ss_dssp -HHHHCSEEEEEE
T ss_pred -HHhhCCEEEEEC
Confidence 445577777775
No 222
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=34.33 E-value=1e+02 Score=23.09 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh--cCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR--SHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake--~~VpVilvshp 176 (291)
+.++.++.+ ..+..++||+|.- |.+ .+- -++++.||..... .++||++++-.
T Consensus 46 ~~~~al~~~----~~~~~dlvl~D~~--mp~-----~~g----~~~~~~lr~~~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 46 GAEQVLDAM----AEEDYDAVIVDLH--MPG-----MNG----LDMLKQLRVMQASGMRYTPVVVLSAD 99 (143)
T ss_dssp SHHHHHHHH----HHSCCSEEEEESC--CSS-----SCH----HHHHHHHHHHHHTTCCCCCEEEEESC
T ss_pred CHHHHHHHH----hcCCCCEEEEeCC--CCC-----CCH----HHHHHHHHhchhccCCCCeEEEEeCC
Confidence 345544433 4577999999976 322 122 2367777766443 56899988753
No 223
>1nba_A N-carbamoylsarcosine amidohydrolase; hydrolase(IN linear amides); 2.00A {Arthrobacter SP} SCOP: c.33.1.3
Probab=34.04 E-value=48 Score=29.50 Aligned_cols=48 Identities=10% Similarity=-0.067 Sum_probs=31.0
Q ss_pred cEEEEeccccccCCCC-CCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 128 GHVIIDNVQFMLGLSD-SALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 128 ~lviIDyLqlm~~~~~-~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
-+||||.-+-...... -.......+-.-+..|-..|++.++||+.+.|
T Consensus 46 ALLVIDmQndf~~~~g~l~~~~~~~vi~~i~~Ll~~aR~~g~pVI~t~~ 94 (264)
T 1nba_A 46 AVIHIDLANAWTQPGHPFSCPGMETIIPNVQRINEAARAKGVPVFYTTN 94 (264)
T ss_dssp EEEEESCBHHHHSSSSTTCCSCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred EEEEEcCcHhHhCCCcccCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 4999998865553221 11122333444556666678999999999987
No 224
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=33.75 E-value=1.9e+02 Score=23.49 Aligned_cols=48 Identities=6% Similarity=0.022 Sum_probs=31.0
Q ss_pred HhCCCcEEEEeccccccCC--CCCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 123 YVYDTGHVIIDNVQFMLGL--SDSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~--~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
+..++++|++=.+- .... ..........+.++-+.++.+|++.+|+++
T Consensus 115 ~~~~~~iil~~~~P-~~~~~~~~~~~~~~~~i~~~n~~i~~~a~~~~v~~i 164 (209)
T 4hf7_A 115 KANKIKVILTSVLP-AAEFPWRREIKDAPQKIQSLNARIEAYAKANKIPFV 164 (209)
T ss_dssp HHTTCEEEEECCCC-CSCCTTCTTCCCHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred hccCceEEEEeeec-cCcccccccccchhHHHHHHHHHHHHHHHhcCCeEe
Confidence 45789988865431 1111 111123445677788899999999999987
No 225
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=33.69 E-value=32 Score=27.26 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCceEEEEec-cCCcCCCCccccccccccccccCccEEEEEc
Q psy4520 155 IIQEFRAFASRSHCHVTLVIH-PRKENEQLTVNSVFGSAKATQESDNVLIIQQ 206 (291)
Q Consensus 155 i~r~LK~~Ake~~VpVilvsh-pRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R 206 (291)
.-..|+..|+++|+.|.+=.| +-..+..++-.|+ ..||.||+..-
T Consensus 24 AAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I-------~~Ad~VIiA~d 69 (111)
T 2kyr_A 24 AAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDI-------AEATIIIHSVA 69 (111)
T ss_dssp HHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHH-------HHCSEEEEEES
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHH-------HhCCEEEEEeC
Confidence 457899999999999999888 5555667777777 57999999863
No 226
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=33.60 E-value=84 Score=23.13 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+.++.++.+ .....++||+|.- + .+ .+. -++++.|+.-....++||++++..
T Consensus 39 ~~~~a~~~l----~~~~~dlii~d~~-l-~~-----~~g----~~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 39 SGGQCIDLL----KKGFSGVVLLDIM-M-PG-----MDG----WDTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp SHHHHHHHH----HTCCCEEEEEESC-C-SS-----SCH----HHHHHHHHHTTCCTTEEEEEEECT
T ss_pred CHHHHHHHH----HhcCCCEEEEeCC-C-CC-----CCH----HHHHHHHHhhcccCCCCEEEEECC
Confidence 445544433 4466899999975 2 21 122 236677776445578999988763
No 227
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=33.39 E-value=2.4e+02 Score=24.45 Aligned_cols=68 Identities=10% Similarity=0.225 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGS 191 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgS 191 (291)
.+.+..+|.+. .+-+++++|+-.- + -|. .....+.+.|+.+++ +..|++++|.-..
T Consensus 161 kqRv~lAraL~--~~p~lllLDEPts--~-----LD~-~~~~~i~~~l~~l~~--~~tviivtH~~~~------------ 216 (260)
T 2ghi_A 161 RQRIAIARCLL--KDPKIVIFDEATS--S-----LDS-KTEYLFQKAVEDLRK--NRTLIIIAHRLST------------ 216 (260)
T ss_dssp HHHHHHHHHHH--HCCSEEEEECCCC--T-----TCH-HHHHHHHHHHHHHTT--TSEEEEECSSGGG------------
T ss_pred HHHHHHHHHHH--cCCCEEEEECccc--c-----CCH-HHHHHHHHHHHHhcC--CCEEEEEcCCHHH------------
Confidence 34555555543 4678999999831 1 222 334567778888864 7899999994221
Q ss_pred ccccccCccEEEEEc
Q psy4520 192 AKATQESDNVLIIQQ 206 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R 206 (291)
+. .||.|+++..
T Consensus 217 --~~-~~d~i~~l~~ 228 (260)
T 2ghi_A 217 --IS-SAESIILLNK 228 (260)
T ss_dssp --ST-TCSEEEEEET
T ss_pred --HH-hCCEEEEEEC
Confidence 33 3899999964
No 228
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=33.16 E-value=71 Score=26.22 Aligned_cols=61 Identities=8% Similarity=0.004 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhC-CCcEEEEeccccccCCCCCC---c-cHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 113 LVMEAVEHAMYVY-DTGHVIIDNVQFMLGLSDSA---L-DRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 113 ~i~~~~r~~~~~~-gv~lviIDyLqlm~~~~~~~---~-~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
.+...++.++..+ ++++|++=+........... . .....+.++.+.++.+|++++||++=+
T Consensus 115 ~l~~li~~l~~~~P~~~iil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~v~~iD~ 180 (232)
T 3dc7_A 115 ALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHLSL 180 (232)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEECCCCCSCSBTTBCSSCCTTSCCHHHHHHHHHHHHHHHTCCEEEH
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCcccCCccCCcccccccccchHHHHHHHHHHHHHHHcCCcEEec
Confidence 4444455554555 78999877664221110000 0 001234667888999999999999844
No 229
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=33.12 E-value=35 Score=25.54 Aligned_cols=43 Identities=9% Similarity=0.080 Sum_probs=28.3
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.....++||+|.- + .+ .+. -++++.|+......++||++++-.
T Consensus 48 ~~~~~dlii~D~~-l-~~-----~~g----~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 48 QQAKYDLIILDIG-L-PI-----ANG----FEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp TTCCCSEEEECTT-C-GG-----GCH----HHHHHHHHSSSTTTTCCEEEEETT
T ss_pred hcCCCCEEEEeCC-C-CC-----CCH----HHHHHHHHhcccccCCCEEEEeCC
Confidence 4567899999976 2 21 122 236667776445678999998753
No 230
>1rdl_1 SUB-MBP-C, mannose-binding protein-C; C-type lectin, calcium-binding protein; HET: MMA; 1.70A {Rattus rattus} SCOP: d.169.1.1 PDB: 1rdj_1* 1rdk_1* 1rdi_1* 1rdm_1* 1rdn_1* 1rdo_1 1bv4_A 1kza_1* 1kzb_1* 1kzc_1* 1kzd_1* 1kze_1*
Probab=33.05 E-value=19 Score=26.78 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=29.8
Q ss_pred eEeEEeeCCCCchhhhHhhhhccCCCcccCCCccccccc
Q psy4520 243 KCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281 (291)
Q Consensus 243 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
+++.|+ ....++.++.++|.+.||.|+.-.|++-+-||
T Consensus 2 ~CY~~~-~~~~~w~~A~~~C~~~g~~La~i~s~~e~~~l 39 (113)
T 1rdl_1 2 KYFMSS-VRRMPLNRAKALCSELQGTVATPRNAEENRAI 39 (113)
T ss_dssp CEEEEC-SSCBCHHHHHHHHHHTTCEECCCCSHHHHHHH
T ss_pred eEEEEe-CCccCHHHHHHHHHhcCCEEcccCCHHHHHHH
Confidence 355554 46789999999999999999988877655554
No 231
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=32.76 E-value=1.2e+02 Score=22.38 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=25.6
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
....++||+|.- + ... .+. -++++.|+.. .++||++++..
T Consensus 48 ~~~~dlvi~D~~-l-~~~----~~g----~~~~~~l~~~---~~~~ii~ls~~ 87 (140)
T 3h5i_A 48 GWYPDLILMDIE-L-GEG----MDG----VQTALAIQQI---SELPVVFLTAH 87 (140)
T ss_dssp TCCCSEEEEESS-C-SSS----CCH----HHHHHHHHHH---CCCCEEEEESS
T ss_pred CCCCCEEEEecc-C-CCC----CCH----HHHHHHHHhC---CCCCEEEEECC
Confidence 367899999976 2 211 122 2356666653 68999988763
No 232
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=32.41 E-value=2.2e+02 Score=25.49 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=41.1
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLII 204 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L 204 (291)
.+.+++++|+-. .+ .|. ..+..+...|+.++++ +..|++++|... +.+.||.|+.+
T Consensus 271 ~~p~~lllDEp~--~~-----LD~-~~~~~l~~~l~~~~~~-~~~vi~~sH~~~---------------~~~~~d~~~~l 326 (339)
T 3qkt_A 271 GEISLLILDEPT--PY-----LDE-ERRRKLITIMERYLKK-IPQVILVSHDEE---------------LKDAADHVIRI 326 (339)
T ss_dssp TTTCEEEEECCC--TT-----CCH-HHHHHHHHHHHHTGGG-SSEEEEEESCGG---------------GGGGCSEEEEE
T ss_pred CCCCEEEEECCC--CC-----CCH-HHHHHHHHHHHHHHhc-CCEEEEEEChHH---------------HHHhCCEEEEE
Confidence 467899999983 11 122 3456678888888766 678999999632 34568999999
Q ss_pred Ecc
Q psy4520 205 QQK 207 (291)
Q Consensus 205 ~R~ 207 (291)
...
T Consensus 327 ~~~ 329 (339)
T 3qkt_A 327 SLE 329 (339)
T ss_dssp EEE
T ss_pred Eec
Confidence 753
No 233
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=32.37 E-value=95 Score=23.90 Aligned_cols=65 Identities=8% Similarity=0.081 Sum_probs=38.2
Q ss_pred CeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 99 PMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 99 pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.+.+.|++|......+. +.....-++=++|+|--. ...+..+......+...+...++||++|.-
T Consensus 67 ~~~l~Dt~G~~~~~~~~---~~~~~~~d~~i~v~d~~~---------~~s~~~~~~~~~~i~~~~~~~~~piilv~n 131 (187)
T 2a9k_A 67 QIDILDTAGQEDYAAIR---DNYFRSGEGFLCVFSITE---------MESFAATADFREQILRVKEDENVPFLLVGN 131 (187)
T ss_dssp EEEEEECCCTTCCHHHH---HHHHHHCSEEEEEEETTC---------HHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred EEEEEECCCCcccHHHH---HHHhccCCEEEEEEECcC---------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 47888999854333332 222233333455555321 234455666777777777777999998763
No 234
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=32.13 E-value=1.9e+02 Score=24.42 Aligned_cols=45 Identities=4% Similarity=0.093 Sum_probs=31.3
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.-.+-+++++|+-.--.+. .....+.+.|+.++++ +..|++++|.
T Consensus 148 L~~~p~lllLDEPts~LD~--------~~~~~l~~~l~~~~~~-g~tiiivtHd 192 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDE--------DSKHKVLKSILEILKE-KGIVIISSRE 192 (214)
T ss_dssp TTSCCSEEEEESTTTTSCT--------TTHHHHHHHHHHHHHH-HSEEEEEESS
T ss_pred HHhCCCEEEEECCCcCCCH--------HHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 4567899999998422221 1234577777888765 8999999994
No 235
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=32.07 E-value=1.4e+02 Score=22.28 Aligned_cols=65 Identities=8% Similarity=0.064 Sum_probs=36.0
Q ss_pred CeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 99 PMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 99 pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.+.+.|++|.... ....+.....-++=++|+|--. ......+......+...+...++|+++|.-
T Consensus 53 ~~~l~D~~G~~~~---~~~~~~~~~~~d~~i~v~d~~~---------~~s~~~~~~~~~~i~~~~~~~~~piilv~n 117 (168)
T 1u8z_A 53 QIDILDTAGQEDY---AAIRDNYFRSGEGFLCVFSITE---------MESFAATADFREQILRVKEDENVPFLLVGN 117 (168)
T ss_dssp EEEEEECCC---C---HHHHHHHHHHCSEEEEEEETTC---------HHHHHHHHHHHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEEEECCCcchh---HHHHHHHhhcCCEEEEEEECCC---------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 4778899884322 2222332333333455555321 233455566677777777777899998753
No 236
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center for structural genomics structure initiative; 2.30A {Alkaliphilus metalliredigens}
Probab=31.90 E-value=51 Score=27.84 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=29.7
Q ss_pred CcEEEEeccccccCCCC-CCccHHHHHHHHHHHHHHHHH---hcCceEEEEec
Q psy4520 127 TGHVIIDNVQFMLGLSD-SALDRFYMQDTIIQEFRAFAS---RSHCHVTLVIH 175 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~-~~~~r~~~~~~i~r~LK~~Ak---e~~VpVilvsh 175 (291)
.-+||||.-+-...... ........+-.-+..|-..|+ +.++||+.+.|
T Consensus 8 tALlvID~Q~~f~~~~g~l~~~~~~~ii~~i~~Ll~~ar~~~~~g~pVi~t~~ 60 (204)
T 3hb7_A 8 HAILVIDMLNDFVGEKAPLRCPGGETIIPDLQKIFEWVRGREGDDIHLVHIQE 60 (204)
T ss_dssp EEEEEECCBTTTSSTTCTTCCGGGGGGHHHHHHHHHHHHHSSSSSEEEEEEEE
T ss_pred eEEEEEcCchhhcCCCCcccCccHHHHHHHHHHHHHHHHhhhhcCCEEEEEEc
Confidence 34899998765544211 111122233334555666788 99999999987
No 237
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=38.05 E-value=9.8 Score=28.95 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhcCceEE
Q psy4520 152 QDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 152 ~~~i~r~LK~~Ake~~VpVi 171 (291)
.+.+-.+++..|+|+||||+
T Consensus 25 ~~~~A~~I~e~A~e~~VPi~ 44 (87)
T 3b1s_B 25 KGTIAQKIVEIAENYSIPVV 44 (87)
Confidence 46688899999999999998
No 238
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=31.49 E-value=39 Score=31.34 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCceEE-EEeccCCcCCCCccccccccccccc-----cCccEEEEEc
Q psy4520 156 IQEFRAFASRSHCHVT-LVIHPRKENEQLTVNSVFGSAKATQ-----ESDNVLIIQQ 206 (291)
Q Consensus 156 ~r~LK~~Ake~~VpVi-lvshpRk~ek~p~lsDLrgSg~IeQ-----dAD~Vi~L~R 206 (291)
+.+|+.||+-.|.-|+ .+.|+|+ |.-.-+-|+|+++. +||.|+|-+.
T Consensus 13 ~~e~~~l~~~~~~~~~~~~~~~~~----~~~~~~~g~gk~~e~~~~~~~~~v~~~~~ 65 (364)
T 2qtf_A 13 EEEAIALVEGANYKVTSIYKLPKS----PNVKFYIQYDKLQQIKNDEEISTLIIFEQ 65 (364)
T ss_dssp HHHHHHHHHHTTEEEEEEECCCSS----CBTTTBSCHHHHHHHHTCTTCCEEEESSC
T ss_pred HHHHHHHHHHCCCEEEEEEEEccC----CCCcceechhHHHHHhhccCCCEEEECCC
Confidence 6789999999999998 4567773 44455677777765 8888887653
No 239
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=31.23 E-value=1.1e+02 Score=30.60 Aligned_cols=69 Identities=19% Similarity=0.113 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccccc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAK 193 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~ 193 (291)
....+|. .-.+-+++++|+=. . +-|- ..+..+.+.|++++++.+..|++++|....
T Consensus 475 Rv~iAra--L~~~p~lLlLDEPT--~-----gLD~-~~~~~i~~ll~~l~~~~g~tviivtHdl~~-------------- 530 (608)
T 3j16_B 475 RVAIVLA--LGIPADIYLIDEPS--A-----YLDS-EQRIICSKVIRRFILHNKKTAFIVEHDFIM-------------- 530 (608)
T ss_dssp HHHHHHH--TTSCCSEEEECCTT--T-----TCCH-HHHHHHHHHHHHHHHHHTCEEEEECSCHHH--------------
T ss_pred HHHHHHH--HHhCCCEEEEECCC--C-----CCCH-HHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--------------
Confidence 3344443 45678999999873 1 1232 445678999999999999999999995442
Q ss_pred ccccCccEEEEEc
Q psy4520 194 ATQESDNVLIIQQ 206 (291)
Q Consensus 194 IeQdAD~Vi~L~R 206 (291)
+..-||.|+++..
T Consensus 531 ~~~~aDrvivl~~ 543 (608)
T 3j16_B 531 ATYLADKVIVFEG 543 (608)
T ss_dssp HHHHCSEEEECEE
T ss_pred HHHhCCEEEEEeC
Confidence 5567899998864
No 240
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=31.17 E-value=85 Score=27.78 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHhCC-CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh--cCceEEEEecc
Q psy4520 109 QPLKLVMEAVEHAMYVYD-TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR--SHCHVTLVIHP 176 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~g-v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake--~~VpVilvshp 176 (291)
.+...+.+.+.......+ -.+||||+++.+ . ...+..+.+-+..+..+ .+++|+++++.
T Consensus 107 ~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l---~------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 107 LSRDEFLALLVEHLRERDLYMFLVLDDAFNL---A------PDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp CCHHHHHHHHHHHHHHTTCCEEEEEETGGGS---C------HHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEEECcccc---c------hHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 356677766665544444 679999999865 1 12233444444444331 58899988874
No 241
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=31.00 E-value=44 Score=32.48 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCC--cEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC
Q psy4520 114 VMEAVEHAMYVYDT--GHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN 180 (291)
Q Consensus 114 i~~~~r~~~~~~gv--~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e 180 (291)
+.+.++. ..++|| +-||||+. + +-++ +. +.-=++++.|+.|.+++++|| ++-.+||.-
T Consensus 346 l~~~i~~-a~~aGI~~~~IilDPG-i--GF~K---t~-~~nl~lL~~l~~l~~~lg~Pv-LvG~SRKsf 405 (442)
T 3mcm_A 346 IEQKKQI-LLKHGIAQQNIYFDIG-F--GFGK---KS-DTARYLLENIIEIKRRLELKA-LVGHSRKPS 405 (442)
T ss_dssp HHHHHHH-HHHHTCCGGGEEEECC-C--C----------------CCHHHHHHHHTSEE-EECCTTCTT
T ss_pred HHHHHHH-HHHcCCCHHHEEEeCC-C--CCCC---CH-HHHHHHHHHHHHHHhhCCCcE-EEEechHHH
Confidence 3344444 467898 67999995 2 1121 11 112347888888877799998 557789874
No 242
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=30.66 E-value=1.1e+02 Score=28.32 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHh--CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccc
Q psy4520 113 LVMEAVEHAMYV--YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFG 190 (291)
Q Consensus 113 ~i~~~~r~~~~~--~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrg 190 (291)
.....++.++.. ....++++|+.. .+ .|. ..+..+...|+.++++ +..|++++|...
T Consensus 340 ~~~~la~~la~~~~~~~~~lllDEp~--~~-----LD~-~~~~~l~~~l~~~~~~-~~~~ii~th~~~------------ 398 (430)
T 1w1w_A 340 TVAALALLFAINSYQPSPFFVLDEVD--AA-----LDI-TNVQRIAAYIRRHRNP-DLQFIVISLKNT------------ 398 (430)
T ss_dssp HHHHHHHHHHHHTSSCCSEEEESSTT--TT-----CCH-HHHHHHHHHHHHHCBT-TBEEEEECSCHH------------
T ss_pred HHHHHHHHHHHhcCCCCCEEEeCCCc--cc-----CCH-HHHHHHHHHHHHHhcC-CCEEEEEECCHH------------
Confidence 445555555433 457899999983 11 122 3345677777777654 789999999522
Q ss_pred cccccccCccEEEEEccC
Q psy4520 191 SAKATQESDNVLIIQQKF 208 (291)
Q Consensus 191 Sg~IeQdAD~Vi~L~R~~ 208 (291)
+...||.++.|++..
T Consensus 399 ---~~~~~d~~~~~~~~~ 413 (430)
T 1w1w_A 399 ---MFEKSDALVGVYRQQ 413 (430)
T ss_dssp ---HHTTCSEEEEEEEET
T ss_pred ---HHHhCCEEEEEEEeC
Confidence 223589999999753
No 243
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A
Probab=30.34 E-value=96 Score=28.47 Aligned_cols=52 Identities=8% Similarity=0.029 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
+...++.+....+.-+.+.|+|.+ + .+ .......++++.++..|+++||||+
T Consensus 101 va~~vsDlaamGA~P~~~l~~l~~--p-~~---~~~~~l~~i~~Gi~~~~~~~gv~lv 152 (342)
T 3c9u_A 101 ISVNVSDVIANGGLPKWALISLNL--P-ED---LEVSYVERFYIGVKRACEFYKCEVV 152 (342)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEE--C-TT---SBHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHCCCchHHhEEEEec--C-CC---CCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 344444444445556899999954 2 11 2256688999999999999999977
No 244
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=30.31 E-value=31 Score=33.00 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
-++-|++...--.+-.+.|+|| .+.+ ..|.+...+...-.+-+.||+++|||++|+=.
T Consensus 271 Gi~~v~~~~~l~~~l~~ADLVI-------TGEG--~~D~Qtl~GK~p~gVa~~A~~~~vPviaiaG~ 328 (383)
T 3cwc_A 271 GIEIVTDALHLEACLADADLVI-------TGEG--RIDSQTIHGKVPIGVANIAKRYNKPVIGIAGS 328 (383)
T ss_dssp HHHHHHHHTTHHHHHHHCSEEE-------ECCE--ESCC----CHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHhChHhhhcCCCEEE-------ECCC--CCcCcCCCCcHHHHHHHHHHHhCCCEEEEeCC
Confidence 4666777665444555678877 2222 13444455667788888999999999999763
No 245
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=30.25 E-value=1.2e+02 Score=30.27 Aligned_cols=74 Identities=19% Similarity=-0.012 Sum_probs=47.0
Q ss_pred CCCCHHH--HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCc
Q psy4520 107 GPQPLKL--VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLT 184 (291)
Q Consensus 107 g~~~i~~--i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~ 184 (291)
...|--+ ..+.++. .-.+-++++.|+=.- + .|. .....+.+-|+.++++ +..|++++|....
T Consensus 220 ~~LSgGe~Qrv~iAra--L~~~p~llllDEPts--~-----LD~-~~~~~l~~~l~~l~~~-g~tvi~vtHdl~~----- 283 (608)
T 3j16_B 220 EKLSGGELQRFAIGMS--CVQEADVYMFDEPSS--Y-----LDV-KQRLNAAQIIRSLLAP-TKYVICVEHDLSV----- 283 (608)
T ss_dssp TTCCHHHHHHHHHHHH--HHSCCSEEEEECTTT--T-----CCH-HHHHHHHHHHHGGGTT-TCEEEEECSCHHH-----
T ss_pred HHCCHHHHHHHHHHHH--HHhCCCEEEEECccc--C-----CCH-HHHHHHHHHHHHHHhC-CCEEEEEeCCHHH-----
Confidence 3345444 4444444 456788999998831 1 122 3355677778888765 8899999995442
Q ss_pred cccccccccccccCccEEEEE
Q psy4520 185 VNSVFGSAKATQESDNVLIIQ 205 (291)
Q Consensus 185 lsDLrgSg~IeQdAD~Vi~L~ 205 (291)
+.+-||.|++++
T Consensus 284 ---------~~~~~drv~vl~ 295 (608)
T 3j16_B 284 ---------LDYLSDFVCIIY 295 (608)
T ss_dssp ---------HHHHCSEEEEEE
T ss_pred ---------HHHhCCEEEEEe
Confidence 345577777775
No 246
>1x9g_A Putative MAR1; structural genomics, protein structure initiative, SGPP, PSI structural genomics of pathogenic protozoa consortium; 2.41A {Leishmania donovani} SCOP: c.33.1.3 PDB: 1xn4_A
Probab=30.05 E-value=87 Score=26.49 Aligned_cols=45 Identities=9% Similarity=0.031 Sum_probs=29.9
Q ss_pred CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcC--ceEEEEec
Q psy4520 127 TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSH--CHVTLVIH 175 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~--VpVilvsh 175 (291)
.-+||||.-+-..... .....+-.-+..|-..|++.+ +||+.+.|
T Consensus 21 tALlvID~Q~~f~~~~----~~~~~vi~~i~~ll~~ar~~g~~~pVi~t~~ 67 (200)
T 1x9g_A 21 TAFLCVDLQEAFSKRI----ENFANCVFVANRLARLHEVVPENTKYIVTEH 67 (200)
T ss_dssp EEEEEECCBTTTTTTS----TTHHHHHHHHHHHHHHHHHSTTSEEEEEEEE
T ss_pred EEEEEECChHHHhhcc----CCHHHHHHHHHHHHHHHHHhCCCceEEEEee
Confidence 4589999876544311 223334444556666789999 99999987
No 247
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=30.01 E-value=69 Score=29.65 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCc--EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 117 AVEHAMYVYDTG--HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 117 ~~r~~~~~~gv~--lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
.++. ...+|++ -||||+. + +..+. . +.--++++.|+.|. ++++||++ -.+||.
T Consensus 200 ~i~~-a~~aGI~~~~IilDPG-~--GF~Kt--~--~~nl~ll~~l~~l~-~lg~PvL~-G~SrKs 254 (318)
T 2vp8_A 200 AAER-AVAAGVAREKVLIDPA-H--DFGKN--T--FHGLLLLRHVADLV-MTGWPVLM-ALSNKD 254 (318)
T ss_dssp HHHH-HHHTTCCGGGEEEETT-T--TCCTT--S--HHHHHHHHTHHHHH-TTSSCBEE-CCC---
T ss_pred HHHH-HHHcCCChhhEEEcCC-C--CcccC--H--HHHHHHHHHHHHHH-hCCCCEEE-EeCcch
Confidence 3444 3578987 8999997 2 22211 1 12245788888884 78999765 667885
No 248
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=29.94 E-value=83 Score=27.23 Aligned_cols=57 Identities=14% Similarity=-0.027 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHH-----HHHHHHHHHHHHHhcCceEEE
Q psy4520 111 LKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYM-----QDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~-----~~~i~r~LK~~Ake~~VpVil 172 (291)
++.+.+.++.+ ...|.++||.=++- +.+-.. .+ ... -+...+.|+.+|++++|+|++
T Consensus 21 ~~~~~~~i~~a-~~~gadlvv~PE~~-~~gy~~--~~-~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 82 (276)
T 2w1v_A 21 LTRACSLVREA-AKQGANIVSLPECF-NSPYGT--TY-FPDYAEKIPGESTQKLSEVAKESSIYLIG 82 (276)
T ss_dssp HHHHHHHHHHH-HHTTCSEEECCTTT-TSCCST--TT-HHHHCBCSSSHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHH-HHCCCCEEEcCCCc-ccCCCH--HH-HHHHhccCCCHHHHHHHHHHHHcCeEEEe
Confidence 44455555554 35789999988873 333211 11 111 145789999999999999885
No 249
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=29.89 E-value=57 Score=24.33 Aligned_cols=52 Identities=4% Similarity=-0.033 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+.++.+..++ ....++||+|.- + .+ .+. -++++.|+......++||++++..
T Consensus 40 ~~~~a~~~l~----~~~~dlii~d~~-l-~~-----~~g----~~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 40 NAIEAVPVAV----KTHPHLIITEAN-M-PK-----ISG----MDLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp SHHHHHHHHH----HHCCSEEEEESC-C-SS-----SCH----HHHHHHHHTSTTTTTSCEEEEESS
T ss_pred CHHHHHHHHH----cCCCCEEEEcCC-C-CC-----CCH----HHHHHHHHcCcccCCCCEEEEeCC
Confidence 4555555443 346899999975 2 21 122 236677776445678999998764
No 250
>4eq6_B Platinum sensitivity protein 3; DNA binding protein; 1.80A {Saccharomyces cerevisiae} PDB: 4dt1_B
Probab=29.81 E-value=3.1e+02 Score=24.60 Aligned_cols=75 Identities=12% Similarity=0.129 Sum_probs=44.5
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHH--------------hCCCcEEEEeccccccCCCCCCc--cHHHHHHHHHHHHHHHH
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMY--------------VYDTGHVIIDNVQFMLGLSDSAL--DRFYMQDTIIQEFRAFA 163 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~--------------~~gv~lviIDyLqlm~~~~~~~~--~r~~~~~~i~r~LK~~A 163 (291)
++.+...+..+.+-++.=..++.. ...+.-||||||.........+- ......+...+.||.+-
T Consensus 103 v~YmNS~SiL~f~gLi~FL~QL~dsP~~AL~RCq~~~~~~qLsgIIIDNlSy~~~d~~~n~~~~~~~~~~~L~kiLk~Lr 182 (256)
T 4eq6_B 103 AIYMNSLSCINITGLIVFLELLYDSPMDALRRCQVDNFNFQLRGIVIDNLSFLNFESDKNYDVINLSKFEKLFKILRKLR 182 (256)
T ss_dssp EEEECCTTSSSHHHHHHHHHHHHHCHHHHHHTTTC-CCCSCEEEEEEECGGGCC----------CHHHHHHHHHHHHHHH
T ss_pred eEEecccccccHHHHHHHHHHHhcCHHHHHHhccccccCCceeeEEEcchhhhccCccccccccchHHHHHHHHHHHHHH
Confidence 444455555566655443333221 23467899999987753211100 11234456789999999
Q ss_pred HhcCceEEEEe
Q psy4520 164 SRSHCHVTLVI 174 (291)
Q Consensus 164 ke~~VpVilvs 174 (291)
+-+||-|+-++
T Consensus 183 ~tfGCwIiT~s 193 (256)
T 4eq6_B 183 EFLGCWIITKS 193 (256)
T ss_dssp HHHCCEEEEEE
T ss_pred HhcCeEEEEec
Confidence 99999999886
No 251
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=29.65 E-value=2.9e+02 Score=24.98 Aligned_cols=84 Identities=13% Similarity=0.045 Sum_probs=41.4
Q ss_pred HHHhhcCCCeEEEcCCCCC------CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCC--CccHHHHHHHHHHHHHHH
Q psy4520 91 YSDWFKTLPMYFLTFHGPQ------PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDS--ALDRFYMQDTIIQEFRAF 162 (291)
Q Consensus 91 a~~~~~~~pl~i~d~~g~~------~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~--~~~r~~~~~~i~r~LK~~ 162 (291)
+...-...|++..+..... ....+....+. .+..+-.+|+||+++.+...... .......+..+...|..+
T Consensus 167 aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~-a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 245 (389)
T 3vfd_A 167 AVAAESNATFFNISAASLTSKYVGEGEKLVRALFAV-ARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGV 245 (389)
T ss_dssp HHHHHTTCEEEEECSCCC-------CHHHHHHHHHH-HHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHH-HHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcc
Confidence 3333345566655543321 22233333333 34556679999999877532211 122345566777777777
Q ss_pred HHhcCceEEEEec
Q psy4520 163 ASRSHCHVTLVIH 175 (291)
Q Consensus 163 Ake~~VpVilvsh 175 (291)
....+..|++++-
T Consensus 246 ~~~~~~~v~vI~a 258 (389)
T 3vfd_A 246 QSAGDDRVLVMGA 258 (389)
T ss_dssp C-----CEEEEEE
T ss_pred cccCCCCEEEEEe
Confidence 7665666666654
No 252
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=29.45 E-value=1.5e+02 Score=26.77 Aligned_cols=68 Identities=16% Similarity=0.283 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGS 191 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgS 191 (291)
.+.++.||.+.. +-+++|+|+=.- + -|. .....|.+.|+.+++ +..|++++|.-.
T Consensus 196 rQRvaiARAL~~--~p~iLlLDEPts--~-----LD~-~~~~~i~~~l~~l~~--~~Tvi~itH~l~------------- 250 (306)
T 3nh6_A 196 KQRVAIARTILK--APGIILLDEATS--A-----LDT-SNERAIQASLAKVCA--NRTTIVVAHRLS------------- 250 (306)
T ss_dssp HHHHHHHHHHHH--CCSEEEEECCSS--C-----CCH-HHHHHHHHHHHHHHT--TSEEEEECCSHH-------------
T ss_pred HHHHHHHHHHHh--CCCEEEEECCcc--c-----CCH-HHHHHHHHHHHHHcC--CCEEEEEEcChH-------------
Confidence 355666666544 568999998831 1 122 334557777888765 589999999322
Q ss_pred ccccccCccEEEEEc
Q psy4520 192 AKATQESDNVLIIQQ 206 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R 206 (291)
.+.. ||.|+++..
T Consensus 251 -~~~~-aD~i~vl~~ 263 (306)
T 3nh6_A 251 -TVVN-ADQILVIKD 263 (306)
T ss_dssp -HHHT-CSEEEEEET
T ss_pred -HHHc-CCEEEEEEC
Confidence 1334 999999964
No 253
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=29.23 E-value=1e+02 Score=22.42 Aligned_cols=50 Identities=10% Similarity=0.107 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+.++.+..++ ....++||+|.- + .+ . .+. -++++.|+.. .++||++++..
T Consensus 42 ~~~~a~~~~~----~~~~dlii~d~~-~-~~-~---~~g----~~~~~~l~~~---~~~~ii~ls~~ 91 (140)
T 3cg0_A 42 NGEEAVRCAP----DLRPDIALVDIM-L-CG-A---LDG----VETAARLAAG---CNLPIIFITSS 91 (140)
T ss_dssp SHHHHHHHHH----HHCCSEEEEESS-C-CS-S---SCH----HHHHHHHHHH---SCCCEEEEECC
T ss_pred CHHHHHHHHH----hCCCCEEEEecC-C-CC-C---CCH----HHHHHHHHhC---CCCCEEEEecC
Confidence 3455554443 345899999975 2 11 1 122 2356677765 78999988753
No 254
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus}
Probab=29.16 E-value=2.9e+02 Score=24.45 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=30.9
Q ss_pred HHHhhcCCCeEEEcCCCC------------------CCHHHHHHHHHHHHHhCCCcEEEEecccccc
Q psy4520 91 YSDWFKTLPMYFLTFHGP------------------QPLKLVMEAVEHAMYVYDTGHVIIDNVQFML 139 (291)
Q Consensus 91 a~~~~~~~pl~i~d~~g~------------------~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~ 139 (291)
|.+.+.. ++++.|+... .+.++|.+.++..+. +---.+++|.|..+.
T Consensus 102 aa~~~~~-~I~ViDS~~~s~g~g~~v~~a~~l~~~G~s~eei~~~l~~~~~-~~~~~f~v~~L~~L~ 166 (280)
T 2dt8_A 102 AAQEFPG-RVTVVDTQAASLGVGMMVLRAKELLEEGQSLEAVLAELERLRR-DHFVRFSVATLEFLK 166 (280)
T ss_dssp HHTTSTT-SEEEEECSCCTHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-SCEEEEECSCSHHHH
T ss_pred HHHhCCC-CEEEECCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-hcEEEEEECCHHHHh
Confidence 4444333 7999997432 578889888887543 333477889986654
No 255
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=29.14 E-value=91 Score=32.96 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHh-CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccc
Q psy4520 112 KLVMEAVEHAMYV-YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFG 190 (291)
Q Consensus 112 ~~i~~~~r~~~~~-~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrg 190 (291)
.+.+..||.+.++ .+-+++|+|+=. .+ -| ...+..+.+.|++++++ +..|++|+|.-..
T Consensus 811 rQRV~LAraL~~~p~~p~LLILDEPT--sG-----LD-~~~~~~L~~lL~~L~~~-G~TVIvI~HdL~~----------- 870 (916)
T 3pih_A 811 AQRIKLASELRKRDTGRTLYILDEPT--VG-----LH-FEDVRKLVEVLHRLVDR-GNTVIVIEHNLDV----------- 870 (916)
T ss_dssp HHHHHHHHHHTSCCCSSEEEEEESTT--TT-----CC-HHHHHHHHHHHHHHHHT-TCEEEEECCCHHH-----------
T ss_pred HHHHHHHHHHhhCCCCCCEEEEECCC--CC-----CC-HHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-----------
Confidence 4556666666544 356899999883 11 12 24456688888888754 9999999996432
Q ss_pred cccccccCccEEEEEc
Q psy4520 191 SAKATQESDNVLIIQQ 206 (291)
Q Consensus 191 Sg~IeQdAD~Vi~L~R 206 (291)
|.. ||.|++|.-
T Consensus 871 ---i~~-ADrIivLgp 882 (916)
T 3pih_A 871 ---IKN-ADHIIDLGP 882 (916)
T ss_dssp ---HTT-CSEEEEEES
T ss_pred ---HHh-CCEEEEecC
Confidence 444 999999964
No 256
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=29.13 E-value=1.3e+02 Score=24.48 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
.+.+....+..+|+++.|||=+.-.|.+. ..........+...| +++.++||+++
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt---~~~~~~~ar~f~~~L---~~~~~lpV~~v 96 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGT---VGPRGEASQTFAKVL---ETTYNVPVVLW 96 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTB---CCHHHHHHHHHHHHH---HHHHCSCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcc---hhHHHHHHHHHHHHH---HHhhCCCEEEe
Confidence 34556666788999999999766223221 123333333444444 44569999997
No 257
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=29.02 E-value=96 Score=23.12 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=35.8
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+.+.|++|......+. +.....-+.-++++|-- + ......+......++......++|+++|.-
T Consensus 53 ~~~~D~~G~~~~~~~~---~~~~~~~~~~i~v~d~~-------~--~~~~~~~~~~~~~i~~~~~~~~~p~iiv~n 116 (166)
T 2ce2_X 53 LDILDTAGQEEYSAMR---DQYMRTGEGFLCVFAIN-------N--TKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116 (166)
T ss_dssp EEEEECCCCSSCCHHH---HHHHHHCSEEEEEEETT-------C--HHHHHHHHHHHHHHHHHHTCSCCCEEEEEE
T ss_pred EEEEECCCchhhhHHH---HHhhccCCEEEEEEECC-------C--HHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 6778888854333322 22223334445565621 1 133444566667777777667899987754
No 258
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=28.99 E-value=1.8e+02 Score=22.44 Aligned_cols=60 Identities=7% Similarity=-0.035 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHhC-CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 110 PLKLVMEAVEHAMYVY-DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~-gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
+.++..+..+.+...- +.++|++-..- +.... ........+..+-+.++.+|++++|+++
T Consensus 87 ~~~~~~~~l~~~i~~~~~~~vi~~~~~p-~~~~~-~~~~~~~~~~~~n~~~~~~a~~~~~~~i 147 (195)
T 1yzf_A 87 TVATFRENLETMIHEIGSEKVILITPPY-ADSGR-RPERPQTRIKELVKVAQEVGAAHNLPVI 147 (195)
T ss_dssp CHHHHHHHHHHHHHHHCGGGEEEECCCC-CCTTT-CTTSCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHHHHHhcCCEEEEEcCCC-Ccccc-chhhhHHHHHHHHHHHHHHHHHhCCeEE
Confidence 5555555554443322 78888887652 22111 1112245567788899999999999887
No 259
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=28.89 E-value=27 Score=28.19 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=28.6
Q ss_pred hCCCcEEEEeccccccC----CCCCCccH--HHHHHHHHHHHHHHHHhcCceEE
Q psy4520 124 VYDTGHVIIDNVQFMLG----LSDSALDR--FYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~----~~~~~~~r--~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
.-..++||..+-.+-.. .+...... -...+.+-.+++.+|+++||||+
T Consensus 35 V~~A~vvi~NPth~AVAL~Yd~~~~~AP~VvAKG~~~~A~~I~~~A~e~~VPi~ 88 (123)
T 2jli_A 35 VKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPIL 88 (123)
T ss_dssp HHTCSEEEECCCSEEEEEECCTTTCSSCEEEEEEETHHHHHHHHHHHHHTCCEE
T ss_pred CCcCcEEEECCCceEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHHHcCCCEE
Confidence 35567887777543221 11000000 12235678899999999999998
No 260
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=28.76 E-value=66 Score=23.04 Aligned_cols=41 Identities=10% Similarity=0.126 Sum_probs=25.5
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.+..++||+|.- |.+ .+.. ++++.|+......++||++++.
T Consensus 43 ~~~~dlvi~D~~--l~~-----~~g~----~~~~~l~~~~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 43 ENKPDLILMDIQ--LPE-----ISGL----EVTKWLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp HHCCSEEEEESB--CSS-----SBHH----HHHHHHHHSTTTTTSCEEEEC-
T ss_pred cCCCCEEEEeCC--CCC-----CCHH----HHHHHHHcCccccCCcEEEEEC
Confidence 346899999976 221 1322 3567777643345899998865
No 261
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=28.74 E-value=1.2e+02 Score=26.62 Aligned_cols=52 Identities=12% Similarity=0.010 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 107 GPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 107 g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+..+++.+.++++. ..++++|++.+.+-..+.- .+ +++|.++|+++|++|++
T Consensus 118 ~~~d~~~l~~~l~~---~~~~~~v~~~~~~nptG~~---~~--------l~~i~~l~~~~~~~li~ 169 (392)
T 2z9v_A 118 EAIDPQAVADMLKA---HPEITVVSVCHHDTPSGTI---NP--------IDAIGALVSAHGAYLIV 169 (392)
T ss_dssp SCCCHHHHHHHHHH---CTTCCEEEEESEEGGGTEE---CC--------HHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHhc---CCCCcEEEEeccCCCCcee---cc--------HHHHHHHHHHcCCeEEE
Confidence 44677877665542 2368899999886443321 12 46888999999998775
No 262
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=28.73 E-value=1.1e+02 Score=22.08 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=25.1
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
..+..++||+|.- + .+. +. -++++.|++ ...++||++++..
T Consensus 48 ~~~~~dlvi~d~~-l-~~~-----~g----~~~~~~l~~--~~~~~~ii~~t~~ 88 (130)
T 3eod_A 48 GGFTPDLMICDIA-M-PRM-----NG----LKLLEHIRN--RGDQTPVLVISAT 88 (130)
T ss_dssp TTCCCSEEEECCC------------C----HHHHHHHHH--TTCCCCEEEEECC
T ss_pred hcCCCCEEEEecC-C-CCC-----CH----HHHHHHHHh--cCCCCCEEEEEcC
Confidence 5667999999975 2 221 11 235666665 3458999988753
No 263
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=28.55 E-value=1e+02 Score=27.18 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=37.8
Q ss_pred CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC----------CCCcccccccccccc
Q psy4520 126 DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN----------EQLTVNSVFGSAKAT 195 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e----------k~p~lsDLrgSg~Ie 195 (291)
..++||||.+-..........-+++-+.+ ..+.++.|+..+|---.| +.+.-.=+. -.+-
T Consensus 84 ~pdlvIVDElG~~~~~~~r~~~~~qDV~~--------~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vp--d~~~ 153 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPGSRHTKRWQDIQE--------LLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLP--DWVL 153 (228)
T ss_dssp CCSEEEESCTTCBCCTTCSSSBHHHHHHH--------HHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBC--HHHH
T ss_pred CCCEEEEeCCCCCCcccchhHHHHHHHHH--------HHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCc--cHHH
Confidence 36899999986542222222345554422 456788898877622111 111111111 2477
Q ss_pred ccCccEEEEE
Q psy4520 196 QESDNVLIIQ 205 (291)
Q Consensus 196 QdAD~Vi~L~ 205 (291)
..||-|.++-
T Consensus 154 ~~a~~v~lvD 163 (228)
T 2r8r_A 154 QEAFDLVLID 163 (228)
T ss_dssp HTCSEEEEBC
T ss_pred hhCCeEEEec
Confidence 8898888874
No 264
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=28.12 E-value=44 Score=26.20 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCceEEEEec-cCCcCCCCccccccccccccccCccEEEEEc
Q psy4520 155 IIQEFRAFASRSHCHVTLVIH-PRKENEQLTVNSVFGSAKATQESDNVLIIQQ 206 (291)
Q Consensus 155 i~r~LK~~Ake~~VpVilvsh-pRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R 206 (291)
.-+.|+.-|+++|+.|.+=.| +-..+..++-.|+ ++||.||+..-
T Consensus 21 AaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I-------~~Ad~VIiA~d 66 (106)
T 2r48_A 21 AAENLQKAADRLGVSIKVETQGGIGVENKLTEEEI-------READAIIIAAD 66 (106)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHH-------HHCSEEEEEES
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHH-------HhCCEEEEEeC
Confidence 357899999999999999888 5555566776777 68999999863
No 265
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=27.79 E-value=45 Score=24.81 Aligned_cols=52 Identities=13% Similarity=0.203 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+.++.++.++ .+..++||+|.- + .+. +. -++++.|+......++||++++-.
T Consensus 34 ~~~~a~~~~~----~~~~dlvi~D~~-l-~~~-----~g----~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 34 NEKEALEQID----HHHPDLVILDMD-I-IGE-----NS----PNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp SHHHHHHHHH----HHCCSEEEEETT-C----------------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred CHHHHHHHHh----cCCCCEEEEeCC-C-CCC-----cH----HHHHHHHHcCcccCCCCEEEEecC
Confidence 4555555443 346899999975 2 221 11 235666765444478999988753
No 266
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=27.71 E-value=2.3e+02 Score=29.39 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCC--CccHHHHHHHHHHHHHHHHHhcCceEEEEec-cCCcC
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDS--ALDRFYMQDTIIQEFRAFASRSHCHVTLVIH-PRKEN 180 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~--~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh-pRk~e 180 (291)
+...++..+..+ +++.--+|+||++-.+....+. +......++++...+..+....+|.|+.... |-..+
T Consensus 282 se~~lr~lF~~A-~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 282 SESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp HHHHHHHHHHHH-TTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred HHHHHHHHHHHH-HHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 344566666554 5566679999999766543221 1223455677788888887777877776543 44433
No 267
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=27.70 E-value=73 Score=33.67 Aligned_cols=71 Identities=11% Similarity=0.075 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccc
Q psy4520 111 LKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFG 190 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrg 190 (291)
..+..+.+|.+...-.-.++|+|+=.--++. ..+..+..-|+.++++ +..|++|.|....
T Consensus 469 e~QRv~LAraL~~~p~~~lllLDEPT~gLD~--------~~~~~l~~~L~~L~~~-G~TvivVtHd~~~----------- 528 (916)
T 3pih_A 469 ESQRIRLATQIGSGLTGVIYVLDEPTIGLHP--------RDTERLIKTLKKLRDL-GNTVIVVEHDEEV----------- 528 (916)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEEECTTTTCCG--------GGHHHHHHHHHHTTTT-TCEEEEECCCHHH-----------
T ss_pred HHHHHHHHHHHhhCCCCcEEEEECCccCCCH--------HHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-----------
Confidence 3456666676655544469999998421111 2245577778888654 9999999996542
Q ss_pred cccccccCccEEEEE
Q psy4520 191 SAKATQESDNVLIIQ 205 (291)
Q Consensus 191 Sg~IeQdAD~Vi~L~ 205 (291)
+.. ||.|+.|.
T Consensus 529 ---~~~-aD~ii~lg 539 (916)
T 3pih_A 529 ---IRN-ADHIIDIG 539 (916)
T ss_dssp ---HHT-CSEEEEEE
T ss_pred ---HHh-CCEEEEEc
Confidence 333 78888884
No 268
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=27.67 E-value=1.1e+02 Score=28.72 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHH-----HHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 111 LKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRF-----YMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~-----~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
++.+.+.++.+ ...|.++||.=++- +.+.. . .+.. ...+..++.|+.+|++++|+|++=
T Consensus 32 l~~~~~li~~A-~~~gadlvv~PE~~-~~~~~-~-~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G 95 (440)
T 1ems_A 32 FQAAKNMIERA-GEKKCEMVFLPECF-DFIGL-N-KNEQIDLAMATDCEYMEKYRELARKHNIWLSLG 95 (440)
T ss_dssp HHHHHHHHHHH-HHTTCSEEEECTTC-SCCCS-S-HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHH-HHCCCCEEECCCcc-cccCc-c-hhHHHHhhccCCCHHHHHHHHHHHHcCeEEEec
Confidence 34444555544 35789999998883 33211 1 1111 112568899999999999999854
No 269
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=27.65 E-value=93 Score=22.45 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+.++.++.+ ..+..++||+|.- |.+ .+-. ++++.|+. ..++||++++..
T Consensus 34 ~~~~al~~~----~~~~~dlii~D~~--~p~-----~~g~----~~~~~lr~---~~~~~ii~~t~~ 82 (120)
T 3f6p_A 34 DGNEAVEMV----EELQPDLILLDIM--LPN-----KDGV----EVCREVRK---KYDMPIIMLTAK 82 (120)
T ss_dssp SHHHHHHHH----HTTCCSEEEEETT--STT-----THHH----HHHHHHHT---TCCSCEEEEEES
T ss_pred CHHHHHHHH----hhCCCCEEEEeCC--CCC-----CCHH----HHHHHHHh---cCCCCEEEEECC
Confidence 445544433 4567899999976 221 1222 24555553 468999988753
No 270
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=27.61 E-value=90 Score=23.66 Aligned_cols=57 Identities=16% Similarity=0.026 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
+.+...+....++.+++++.|||=+=--|.+.. ....+.+..+.+.|+. . ++||.++
T Consensus 35 ~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~---~~~~~~~~~f~~~L~~---~-~lpV~~~ 91 (98)
T 1iv0_A 35 TLEEDVEALLDFVRREGLGKLVVGLPLRTDLKE---SAQAGKVLPLVEALRA---R-GVEVELW 91 (98)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCCCSSS---CCCSSTTHHHHHHHHH---T-TCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeeccCCCCCc---CHHHHHHHHHHHHHhc---C-CCCEEEE
Confidence 345667777788899999988886442344322 1223334556666655 3 8999886
No 271
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=27.42 E-value=67 Score=28.03 Aligned_cols=59 Identities=22% Similarity=0.124 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHH-HhCCCcEEEEeccccccCCCCCCccHHHH----H-----HHHHHHHHHHHHhcCceEEEE
Q psy4520 111 LKLVMEAVEHAM-YVYDTGHVIIDNVQFMLGLSDSALDRFYM----Q-----DTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 111 i~~i~~~~r~~~-~~~gv~lviIDyLqlm~~~~~~~~~r~~~----~-----~~i~r~LK~~Ake~~VpVilv 173 (291)
++.+.+.++.+. ...|.++||.=++-+ .+.. ...... + +...+.|+.+|++++|+|++=
T Consensus 29 ~~~~~~~i~~a~~~~~gadlvv~PE~~~-~g~~---~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 97 (291)
T 1f89_A 29 LQRAATFIERAMKEQPDTKLVVLPECFN-SPYS---TDQFRKYSEVINPKEPSTSVQFLSNLANKFKIILVGG 97 (291)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEECCTTTT-SCSC---HHHHHHHTTBCCSSSCCHHHHHHHHHHHHSSCEEECC
T ss_pred HHHHHHHHHHHhhccCCCeEEEcCCCcc-cCCC---hHHHHHHhhhhccCCCChHHHHHHHHHHHcCcEEEec
Confidence 444555555542 457899999888733 3211 111110 1 457889999999999998854
No 272
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=27.40 E-value=98 Score=28.28 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
+.+.++. ..++|++-||||+. + +.++ +- +.--++++.|+.|.. +++||++ -.+||.
T Consensus 179 l~~~i~~-a~~~Gi~~IilDPG-~--Gf~k---t~-~~n~~ll~~l~~~~~-~g~Pvl~-G~Srks 234 (294)
T 2dqw_A 179 LEAQARR-ALSAGVPQVVLDPG-F--GFGK---LL-EHNLALLRRLDEIVA-LGHPVLV-GLSRKR 234 (294)
T ss_dssp HHHHHHH-HHHTTCSCEEEECC-T--TSSC---CH-HHHHHHHHTHHHHHT-TSSCBEE-CCTTCH
T ss_pred HHHHHHH-HHHCCCCcEEEcCC-C--Cccc---CH-HHHHHHHHHHHHHhc-CCCCEEE-Eeccch
Confidence 3334444 35799999999997 2 2221 22 222457888888865 8999754 678874
No 273
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=27.40 E-value=29 Score=28.49 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcCceEE
Q psy4520 152 QDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 152 ~~~i~r~LK~~Ake~~VpVi 171 (291)
.+.+-..++.+|+++||||+
T Consensus 79 ~g~~A~~I~e~A~e~gVPi~ 98 (137)
T 3bzs_A 79 KDAKALQIIKLAELYDIPVI 98 (137)
T ss_dssp ETHHHHHHHHHHHHHTCCEE
T ss_pred CCHHHHHHHHHHHHcCCCEE
Confidence 35678899999999999998
No 274
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=27.36 E-value=58 Score=25.43 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=24.5
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.++..++|++|.- |-+. +-.+ +.+.||+ .++||++++-
T Consensus 50 ~~~~~DlvllDi~--mP~~-----~G~e----l~~~lr~----~~ipvI~lTa 87 (123)
T 2lpm_A 50 RKGQFDIAIIDVN--LDGE-----PSYP----VADILAE----RNVPFIFATG 87 (123)
T ss_dssp HHCCSSEEEECSS--SSSC-----CSHH----HHHHHHH----TCCSSCCBCT
T ss_pred HhCCCCEEEEecC--CCCC-----CHHH----HHHHHHc----CCCCEEEEec
Confidence 4577999999976 4332 2222 4555553 5899998753
No 275
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=27.34 E-value=2.3e+02 Score=22.76 Aligned_cols=43 Identities=7% Similarity=-0.042 Sum_probs=28.5
Q ss_pred CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 127 TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
.++|++-..-... .. .......+.++-+.++++|++++|+++=
T Consensus 130 ~~iil~~~~p~~~-~~--~~~~~~~~~~~n~~l~~~a~~~~v~~iD 172 (218)
T 1vjg_A 130 YPVLMISPAPYIE-QQ--DPGRRRRTIDLSQQLALVCQDLDVPYLD 172 (218)
T ss_dssp SCEEEECCCCCCC-TT--CTTHHHHHHHHHHHHHHHHHHHTCCEEC
T ss_pred CcEEEECCCCccc-cc--cchHHHHHHHHHHHHHHHHHHcCCcEEe
Confidence 7888876642110 01 1123455677889999999999999883
No 276
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=27.08 E-value=1e+02 Score=28.02 Aligned_cols=62 Identities=6% Similarity=0.038 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHh-CCCcEEEEeccccccCCCCCCccHHHHH-----HHHHHHHHHHHHhcCceEEEEe
Q psy4520 111 LKLVMEAVEHAMYV-YDTGHVIIDNVQFMLGLSDSALDRFYMQ-----DTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 111 i~~i~~~~r~~~~~-~gv~lviIDyLqlm~~~~~~~~~r~~~~-----~~i~r~LK~~Ake~~VpVilvs 174 (291)
++.+.+.++.++.. .|+++||.=++- +.+..- ........ +..++.|+.+|++++|+|++-.
T Consensus 35 l~~i~~~i~~A~~~~~gadLVVfPE~~-l~G~~~-~~~~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~G~ 102 (341)
T 2uxy_A 35 ARKIAEMIVGMKQGLPGMDLVVFPEYS-LQGIMY-DPAEMMETAVAIPGEETEIFSRACRKANVWGVFSL 102 (341)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEECCTTT-TTBCCC-SHHHHHHHCBCSSSHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeCCCc-ccccCC-CHHHHHHHhccCCCHHHHHHHHHHHHhCcEEEEEe
Confidence 44455555555443 689999988873 333211 01111111 4578899999999999988544
No 277
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=27.01 E-value=24 Score=29.04 Aligned_cols=55 Identities=5% Similarity=0.055 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCceEEEEeccCCc--CCCCc-cc-cc-----cc---cc---cccccCccEEEEEccC
Q psy4520 154 TIIQEFRAFASRSHCHVTLVIHPRKE--NEQLT-VN-SV-----FG---SA---KATQESDNVLIIQQKF 208 (291)
Q Consensus 154 ~i~r~LK~~Ake~~VpVilvshpRk~--ek~p~-ls-DL-----rg---Sg---~IeQdAD~Vi~L~R~~ 208 (291)
.....|++||..+++||+.-.+.+.. +.-|. ++ .+ .+ .. ..-++||.|+++.-+-
T Consensus 49 ~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~~~~~~~~~aDlvl~iG~~~ 118 (170)
T 3cf4_G 49 ELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWPGLDGNGNYDMIITIGFKK 118 (170)
T ss_dssp HHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTCCCSSSSCCCSEEEEESCCH
T ss_pred hHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhhhHHHHhhcCCEEEEECCcc
Confidence 36788999999999999754332222 12331 11 01 11 11 4568899999998543
No 278
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=26.70 E-value=1.4e+02 Score=23.94 Aligned_cols=52 Identities=13% Similarity=0.149 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCcEEEEe-ccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 116 EAVEHAMYVYDTGHVIID-NVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 116 ~~~r~~~~~~gv~lviID-yLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
+....++.+++++.|||= +++ |.+. .....+.+..+.+.|+ +.+++||.++=
T Consensus 43 ~~l~~li~e~~v~~iVvGlP~~-mdGt---~~~~~~~~~~f~~~L~---~~~~lpV~~~D 95 (138)
T 1nu0_A 43 NIIERLLKEWQPDEIIVGLPLN-MDGT---EQPLTARARKFANRIH---GRFGVEVKLHD 95 (138)
T ss_dssp HHHHHHHHHHCCSEEEEEEEEC-TTSC---BCHHHHHHHHHHHHHH---HHHCCCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEecccC-CCcC---cCHHHHHHHHHHHHHH---HHhCCCEEEEc
Confidence 344455677899988886 443 3332 1244444555555554 45699999984
No 279
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=26.08 E-value=49 Score=25.89 Aligned_cols=45 Identities=7% Similarity=0.204 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCceEEEEec-cCCcCCCCccccccccccccccCccEEEEEc
Q psy4520 155 IIQEFRAFASRSHCHVTLVIH-PRKENEQLTVNSVFGSAKATQESDNVLIIQQ 206 (291)
Q Consensus 155 i~r~LK~~Ake~~VpVilvsh-pRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R 206 (291)
.-..|+.-|+++|+.|.+=.| +-..+..++-.|+ ++||.||+..-
T Consensus 21 AaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I-------~~Ad~VIiA~d 66 (106)
T 2r4q_A 21 AADALKEKAKELGVEIKVETNGSSGIKHKLTAQEI-------EDAPAIIVAAD 66 (106)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHH-------HHCSCEEEEES
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHH-------HhCCEEEEEeC
Confidence 357899999999999999888 5555566776777 68999999863
No 280
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A
Probab=25.96 E-value=80 Score=27.07 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=30.9
Q ss_pred CcEEEEeccccccCC-CCCCcc-HHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 127 TGHVIIDNVQFMLGL-SDSALD-RFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 127 v~lviIDyLqlm~~~-~~~~~~-r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.-+||||.-+-.... +.-... ....+-.-+..|-..|++.++||+.+.+
T Consensus 23 ~ALlVID~QndF~~p~G~l~~~~~~~~ii~~i~~Li~~aR~~g~pVi~t~d 73 (211)
T 3o94_A 23 KALISIDYTEDFVADSGKLTAGAPAQAISDAISKVTRLAFERGDYIFFTID 73 (211)
T ss_dssp CEEEEESCBHHHHSTTCTTCCCHHHHTTHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred eEEEEEcCchhhhCCCCcccCCccHHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 459999988655532 211111 1233334456677788999999999873
No 281
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism, ATP-binding, ligase, nucleotide-binding, biosynthesis; HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Probab=25.88 E-value=1.1e+02 Score=31.11 Aligned_cols=56 Identities=13% Similarity=0.101 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+...++.++...+-.+-+.|++.+ +.. .....+....++++.++..|+++||||+-
T Consensus 466 Vaeav~di~a~Ga~Pl~~~~~l~~--g~~-~~~~~~~~l~~~v~Gi~~a~~~~gv~ivg 521 (725)
T 3ac6_A 466 LAEACRNVSVVGAKPLAYTDGLNL--GSP-ETPEGYHELAETIAGLKEASEALGVPVVS 521 (725)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEC--SCS-SSHHHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHcCCcceEEEEEEEc--CCC-CChhHHHHHHHHHHHHHHHHHHhCCCeee
Confidence 444555555555556889999965 221 11223567889999999999999999873
No 282
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=25.79 E-value=1.2e+02 Score=22.20 Aligned_cols=50 Identities=24% Similarity=0.275 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+..+.++.++ ....++||+|.- |.+ .+. -++++.|+. ...++||++++..
T Consensus 37 ~~~~al~~~~----~~~~dlvilD~~--lp~-----~~g----~~~~~~l~~--~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 37 NGLDAMKLIE----EYNPNVVILDIE--MPG-----MTG----LEVLAEIRK--KHLNIKVIIVTTF 86 (133)
T ss_dssp CHHHHHHHHH----HHCCSEEEECSS--CSS-----SCH----HHHHHHHHH--TTCSCEEEEEESC
T ss_pred CHHHHHHHHh----hcCCCEEEEecC--CCC-----CCH----HHHHHHHHH--HCCCCcEEEEecC
Confidence 3455544433 345799999975 222 122 235666665 3458999998763
No 283
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=25.76 E-value=1.3e+02 Score=27.22 Aligned_cols=60 Identities=12% Similarity=0.205 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhCCCc--EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcC
Q psy4520 111 LKLVMEAVEHAMYVYDTG--HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKEN 180 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~--lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~e 180 (291)
.+.+.+.++.+ ...|++ -||||+. + +... +. +.--++++.|+.|.. +++||++ -.+||.-
T Consensus 162 ~~~l~~~i~~a-~~~Gi~~~~IilDPg-~--gf~k---~~-~~n~~ll~~l~~~~~-~g~P~l~-G~Srksf 223 (282)
T 1aj0_A 162 NRYFIEQIARC-EQAGIAKEKLLLDPG-F--GFGK---NL-SHNYSLLARLAEFHH-FNLPLLV-GMSRKSM 223 (282)
T ss_dssp HHHHHHHHHHH-HHTTCCGGGEEEECC-T--TSSC---CH-HHHHHHHHTGGGGGG-GCSCBEE-CCTTCHH
T ss_pred HHHHHHHHHHH-HHcCCChhhEEEeCC-C--Cccc---CH-HHHHHHHHHHHHHhc-CCCCEEE-EECccHh
Confidence 44455555554 579998 8999997 2 2221 21 222457778877755 8999754 6788863
No 284
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=25.72 E-value=33 Score=28.44 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=28.3
Q ss_pred CCCcEEEEeccccccC----CCCCCccH--HHHHHHHHHHHHHHHHhcCceEE
Q psy4520 125 YDTGHVIIDNVQFMLG----LSDSALDR--FYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~----~~~~~~~r--~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
-..++||..+-.+-.. .+...... -...+.+-..++.+|+++||||+
T Consensus 45 ~~A~vvi~NPth~AVAL~Yd~~~~~AP~VvAKG~g~~A~~I~e~A~e~gVPi~ 97 (144)
T 2jlj_A 45 KRSSVVVAAATHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPIL 97 (144)
T ss_dssp HTCSEEEEETTTEEEEEECCTTTCSSCEEEEEEETHHHHHHHHHHHHHTCCEE
T ss_pred CCCCEEEECCCcEEEEEEeCCCCCCCCEEEEEeCCHHHHHHHHHHHHcCCCEE
Confidence 4567888777543221 11000010 12235678899999999999998
No 285
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=25.68 E-value=1e+02 Score=27.44 Aligned_cols=50 Identities=8% Similarity=0.106 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEe
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVI 174 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvs 174 (291)
.+..+|.+.++. +++++|+.|++.+.. . ..+++.|...|++.|++|..|.
T Consensus 196 ps~~~l~~l~~~-ik~~~v~~if~e~~~-----~----------~~~~~~l~~~a~~~g~~v~~l~ 245 (282)
T 3mfq_A 196 VANSDMIETVNL-IIDHNIKAIFTESTT-----N----------PERMKKLQEAVKAKGGQVEVVT 245 (282)
T ss_dssp CCHHHHHHHHHH-HHHHTCCEEECBTTS-----C----------THHHHHHHHHHHTTSCCCEEET
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEEeCCC-----C----------hHHHHHHHHHHHhcCCceEEec
Confidence 355565555544 455666666654431 0 1245556666777777766553
No 286
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=25.38 E-value=1.8e+02 Score=23.46 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHH---HHhCCCcEEEEeccccccCC---------CCCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 110 PLKLVMEAVEHA---MYVYDTGHVIIDNVQFMLGL---------SDSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 110 ~i~~i~~~~r~~---~~~~gv~lviIDyLqlm~~~---------~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
+.++..+..+.+ .+..|.++|++-+...-... ..........+..+-+.++++|++++|+++
T Consensus 94 ~~~~~~~~l~~~i~~~~~~~~~vil~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~v 167 (240)
T 3mil_A 94 PLPEFIDNIRQMVSLMKSYHIRPIIIGPGLVDREKWEKEKSEEIALGYFRTNENFAIYSDALAKLANEEKVPFV 167 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEECCCCCCHHHHHHHCHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHhCCeEE
Confidence 445544444332 24458888887764321100 000011235567788999999999999987
No 287
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A
Probab=25.29 E-value=1e+02 Score=27.91 Aligned_cols=53 Identities=4% Similarity=-0.013 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
-+...++.+....+.-+.+.|+|.+ . .+ .+ .....++++.++..|+++||||+
T Consensus 74 ava~~lsDlaamGA~P~~~~~~l~~-p--~~--~~-~~~l~~i~~Gi~~~~~~~g~~lv 126 (334)
T 2rb9_A 74 AICGTANDVAVSGAIPRYLSCGFIL-E--EG--LP-METLKAVVTSMAETARTAGIAIV 126 (334)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEEEEE-E--TT--CC-HHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHCCCchHHhEEEEec-C--CC--CC-HHHHHHHHHHHHHHHHHcCCEEE
Confidence 3455556655555566899999965 2 11 12 25678999999999999999987
No 288
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=25.16 E-value=2e+02 Score=27.82 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCC-----CCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSD-----SALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~-----~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
..++..+..+ +...-.+|+||+++.+..... ....+.+.+..+...|..+....+|-|++.++
T Consensus 95 ~~~r~lf~~A-~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn 162 (476)
T 2ce7_A 95 ARVRDLFAQA-KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATN 162 (476)
T ss_dssp HHHHHHHHHH-HHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEES
T ss_pred HHHHHHHHHH-HhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence 3444445443 345568999999987653211 11223455677777777766666777777666
No 289
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=24.93 E-value=1.6e+02 Score=25.69 Aligned_cols=52 Identities=15% Similarity=0.052 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 107 GPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 107 g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+..+++.+.++++. ..++++|++.+.+-..+.- .+ +++|..+|+++|++|++
T Consensus 130 ~~~d~~~l~~~l~~---~~~~~~v~~~~~~nptG~~---~~--------l~~i~~l~~~~~~~li~ 181 (386)
T 2dr1_A 130 KAVKPEDLDDALRK---NPDVEAVTITYNETSTGVL---NP--------LPELAKVAKEHDKLVFV 181 (386)
T ss_dssp CCCCHHHHHHHHHH---CTTCCEEEEESEETTTTEE---CC--------HHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHhc---CCCCcEEEEEeecCCcchh---CC--------HHHHHHHHHHcCCeEEE
Confidence 34678877665532 2468999988775322211 11 57888999999998874
No 290
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0
Probab=24.78 E-value=71 Score=27.46 Aligned_cols=49 Identities=8% Similarity=-0.146 Sum_probs=30.0
Q ss_pred CcEEEEeccccccCCCCCCc------cHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 127 TGHVIIDNVQFMLGLSDSAL------DRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 127 v~lviIDyLqlm~~~~~~~~------~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.-+||||.-+-....+..-. .....+-.-+..|-..|++.++||+.+.|
T Consensus 26 tALlVID~Qndf~~~~g~l~~~~~~~~~~~~vv~~i~~Ll~~ar~~g~pVi~~~~ 80 (226)
T 3kl2_A 26 TAIVLIEYQNEFTSDGGVLHGAVADVMQHTGMLANTVAVVDAARQAGVPIMHAPI 80 (226)
T ss_dssp EEEEEECCBHHHHSTTCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred eEEEEEcCchhhhCCCccccccccccccHHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 44999998865444221100 01222333455666778999999999876
No 291
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=24.31 E-value=1.4e+02 Score=22.29 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccC
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR 177 (291)
+.++.++. ......++||+|.- + .+ .+. -++++.|+.. ..++||++++...
T Consensus 54 ~~~~al~~----l~~~~~dlii~D~~-l-~~-----~~g----~~~~~~l~~~--~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 54 NGQEAIQL----LEKESVDIAILDVE-M-PV-----KTG----LEVLEWIRSE--KLETKVVVVTTFK 104 (150)
T ss_dssp SHHHHHHH----HTTSCCSEEEECSS-C-SS-----SCH----HHHHHHHHHT--TCSCEEEEEESCC
T ss_pred CHHHHHHH----hhccCCCEEEEeCC-C-CC-----CcH----HHHHHHHHHh--CCCCeEEEEeCCC
Confidence 45554443 34577999999975 2 21 122 2355666653 4689999987643
No 292
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=24.19 E-value=85 Score=23.15 Aligned_cols=49 Identities=12% Similarity=0.061 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+..+.++.+ .....++||+|. + . . .+. -++++.|+.. ..++||++++..
T Consensus 36 ~~~~a~~~l----~~~~~dlvi~d~--~-~--~---~~g----~~~~~~l~~~--~~~~pii~ls~~ 84 (142)
T 2qxy_A 36 NEQEAFTFL----RREKIDLVFVDV--F-E--G---EES----LNLIRRIREE--FPDTKVAVLSAY 84 (142)
T ss_dssp SHHHHHHHH----TTSCCSEEEEEC--T-T--T---HHH----HHHHHHHHHH--CTTCEEEEEESC
T ss_pred CHHHHHHHH----hccCCCEEEEeC--C-C--C---CcH----HHHHHHHHHH--CCCCCEEEEECC
Confidence 345544433 446789999998 2 1 1 121 2456666653 347999998764
No 293
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=24.15 E-value=1.3e+02 Score=25.62 Aligned_cols=51 Identities=16% Similarity=0.072 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 107 GPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 107 g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+..+++.+.++++ .+++++|++.+.+-..+.- .+ +++|.++|+++|++|++
T Consensus 109 ~~~d~~~l~~~l~----~~~~~~v~~~~~~nptG~~---~~--------~~~i~~l~~~~~~~li~ 159 (353)
T 2yrr_A 109 EPVDPEAVARALK----RRRYRMVALVHGETSTGVL---NP--------AEAIGALAKEAGALFFL 159 (353)
T ss_dssp SCCCHHHHHHHHH----HSCCSEEEEESEETTTTEE---CC--------HHHHHHHHHHHTCEEEE
T ss_pred CCCCHHHHHHHHH----hCCCCEEEEEccCCCccee---cC--------HHHHHHHHHHcCCeEEE
Confidence 3467777766553 2368899988875332211 12 45788899999998774
No 294
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=24.10 E-value=1.1e+02 Score=27.92 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
.+++.+.+.++.. ...++++|++.+.+-+.+.- .+ +++|..+|+++|+.|++
T Consensus 178 ~d~~~le~~l~~~-~~~~~~~v~~~~~~n~tG~~---~~--------l~~l~~l~~~~g~~li~ 229 (427)
T 2w8t_A 178 NSVEDLDKRLGRL-PKEPAKLVVLEGVYSMLGDI---AP--------LKEMVAVAKKHGAMVLV 229 (427)
T ss_dssp TCHHHHHHHHHTS-CSSSCEEEEEESEETTTTEE---CC--------HHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHhc-cCCCCeEEEEcCCCCCCCCc---cC--------HHHHHHHHHHcCCEEEE
Confidence 3566665444321 00168899999986433211 12 67899999999998774
No 295
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=24.08 E-value=84 Score=27.40 Aligned_cols=51 Identities=12% Similarity=0.004 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 107 GPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 107 g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+..+++.+.+++ ..+++++|++.+.+-..+.- .+ +++|..+|+++|++|++
T Consensus 112 ~~~d~~~l~~~i----~~~~~~~v~~~~~~nptG~~---~~--------l~~i~~l~~~~~~~li~ 162 (384)
T 3zrp_A 112 DYVKPGEVEEEV----RKSEYKLVALTHVETSTGVR---EP--------VKDVINKIRKYVELIVV 162 (384)
T ss_dssp CCCCHHHHHHHH----HHSCEEEEEEESEETTTTEE---CC--------HHHHHHHHGGGEEEEEE
T ss_pred CCCCHHHHHHHH----HhCCCcEEEEeCCCCCCceE---Cc--------HHHHHHHHHhcCCEEEE
Confidence 445777776554 34568999999885332211 12 56788999999988774
No 296
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=24.05 E-value=71 Score=28.96 Aligned_cols=64 Identities=8% Similarity=0.100 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHh-CCCcEEEEeccccccCCC-CCC-ccHH-H-HHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 111 LKLVMEAVEHAMYV-YDTGHVIIDNVQFMLGLS-DSA-LDRF-Y-MQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 111 i~~i~~~~r~~~~~-~gv~lviIDyLqlm~~~~-~~~-~~r~-~-~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
++.+.+.++.++.. .|+++||.=++- +.+-. ... .... . .-+..++.|+.+|++++|.|++-..
T Consensus 36 l~~~~~li~~A~~~~~gadLVVfPE~~-l~G~~~~~~~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~G~~ 104 (334)
T 2dyu_A 36 IESIIRTLHATKAGYPGVELIIFPEYS-TQGLNTAKWLSEEFLLDVPGKETELYAKACKEAKVYGVFSIM 104 (334)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEECCTTT-TTCCCTTTTTSGGGCBCSSSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCcEEEcCCCc-cccCCCChhHHHHhhccCCCHHHHHHHHHHHHhCeEEEEeeE
Confidence 44555555555443 689999988873 33311 000 0000 0 0145788999999999999886443
No 297
>3b0z_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=29.78 E-value=16 Score=29.10 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhcCceEE
Q psy4520 152 QDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 152 ~~~i~r~LK~~Ake~~VpVi 171 (291)
.+.+-.+++..|+|+||||+
T Consensus 25 ~~~~A~~I~e~A~e~gVPi~ 44 (114)
T 3b0z_B 25 AGLIALRIREIGAEHRVPTL 44 (114)
Confidence 46688899999999999998
No 298
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=23.93 E-value=2e+02 Score=30.70 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=34.2
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.-..-.+|++|+.. ++.+.......+..-|+.++++.++.|+++.|-
T Consensus 865 la~~~sLlLLDEp~-------~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~ 911 (1022)
T 2o8b_B 865 HATAHSLVLVDELG-------RGTATFDGTAIANAVVKELAETIKCRTLFSTHY 911 (1022)
T ss_dssp HCCTTCEEEEECTT-------TTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC
T ss_pred hCCCCcEEEEECCC-------CCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 34567899999993 123444445557778888888889999999993
No 299
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=23.89 E-value=2.2e+02 Score=25.11 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 107 GPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 107 g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+..+++.+.++++. +.++|+|.+-+-..+.- .+. +-+++|..+|+++|++|++
T Consensus 165 ~~~d~~~l~~~l~~-----~~~~v~~~~p~nptG~~---~~~-----~~l~~i~~~~~~~~~~li~ 217 (407)
T 3nra_A 165 AGLDLTGLEEAFKA-----GARVFLFSNPNNPAGVV---YSA-----EEIGQIAALAARYGATVIA 217 (407)
T ss_dssp CCBCHHHHHHHHHT-----TCCEEEEESSCTTTCCC---CCH-----HHHHHHHHHHHHHTCEEEE
T ss_pred CCcCHHHHHHHHhh-----CCcEEEEcCCCCCCCcc---cCH-----HHHHHHHHHHHHcCCEEEE
Confidence 33577777665532 67888887775322211 122 1367888899999998885
No 300
>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A
Probab=23.87 E-value=2e+02 Score=24.60 Aligned_cols=63 Identities=3% Similarity=-0.195 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCc---eEEEEec
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHC---HVTLVIH 175 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~V---pVilvsh 175 (291)
+.+.-...++.+..+.|+.+|.+||-. .+.. ...........+++.|+..+.++++ +|+++-|
T Consensus 94 ~~~~~~~~~~~la~~~G~~Vv~~d~rg--~~~~-~~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~ 159 (323)
T 1lzl_A 94 TAESSDPFCVEVARELGFAVANVEYRL--APET-TFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQ 159 (323)
T ss_dssp CGGGGHHHHHHHHHHHCCEEEEECCCC--TTTS-CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEE
T ss_pred ChhhhHHHHHHHHHhcCcEEEEecCCC--CCCC-CCCchHHHHHHHHHHHHhhHHHcCCChhheEEEec
Confidence 344444566677777899999999973 2211 1112233455567777777777777 6777744
No 301
>1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13
Probab=23.87 E-value=2.3e+02 Score=23.48 Aligned_cols=61 Identities=10% Similarity=-0.039 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhC-CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 112 KLVMEAVEHAMYVY-DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 112 ~~i~~~~r~~~~~~-gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
......++++...+ |..++.+|+-.. +.+.......+..+.+.++.+...+.-+|+++-|+
T Consensus 50 ~~~~~~~~~L~~~~~g~~vi~~D~~G~----G~s~~~~~~~~~~~~~~l~~~~~~~~~~~~lvGhS 111 (302)
T 1pja_A 50 YSFRHLLEYINETHPGTVVTVLDLFDG----RESLRPLWEQVQGFREAVVPIMAKAPQGVHLICYS 111 (302)
T ss_dssp GGGHHHHHHHHHHSTTCCEEECCSSCS----GGGGSCHHHHHHHHHHHHHHHHHHCTTCEEEEEET
T ss_pred hHHHHHHHHHHhcCCCcEEEEeccCCC----ccchhhHHHHHHHHHHHHHHHhhcCCCcEEEEEEC
Confidence 33445566665543 899999998853 21112333567778888888877776788888764
No 302
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa}
Probab=23.83 E-value=1.8e+02 Score=23.68 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCc-eEEEEeccCCc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHC-HVTLVIHPRKE 179 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~V-pVilvshpRk~ 179 (291)
+.......++.+. ++|..++.+|+-..=.+... .........+.+.+..+.++++. +|+++.|+-..
T Consensus 58 ~~~~~~~~~~~l~-~~g~~v~~~d~~G~G~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg 125 (315)
T 4f0j_A 58 CAGTWERTIDVLA-DAGYRVIAVDQVGFCKSSKP--AHYQYSFQQLAANTHALLERLGVARASVIGHSMGG 125 (315)
T ss_dssp CGGGGHHHHHHHH-HTTCEEEEECCTTSTTSCCC--SSCCCCHHHHHHHHHHHHHHTTCSCEEEEEETHHH
T ss_pred cchHHHHHHHHHH-HCCCeEEEeecCCCCCCCCC--CccccCHHHHHHHHHHHHHHhCCCceEEEEecHHH
Confidence 3444555566654 45899999999853111111 11112345556666666666664 68888776443
No 303
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=23.81 E-value=3e+02 Score=26.67 Aligned_cols=68 Identities=12% Similarity=0.262 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccc
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGS 191 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgS 191 (291)
.+.++.+|.+.+ +-+++++|+-.- + -|. .....+.+.|+++++ +..|++++|.-.
T Consensus 486 ~qrl~iAral~~--~p~illlDEpts--~-----LD~-~~~~~i~~~l~~~~~--~~tvi~itH~~~------------- 540 (582)
T 3b60_A 486 RQRIAIARALLR--DSPILILDEATS--A-----LDT-ESERAIQAALDELQK--NRTSLVIAHRLS------------- 540 (582)
T ss_dssp HHHHHHHHHHHH--CCSEEEEETTTS--S-----CCH-HHHHHHHHHHHHHHT--TSEEEEECSCGG-------------
T ss_pred HHHHHHHHHHHh--CCCEEEEECccc--c-----CCH-HHHHHHHHHHHHHhC--CCEEEEEeccHH-------------
Confidence 445566666543 568999999831 1 122 223457777888764 899999999422
Q ss_pred ccccccCccEEEEEc
Q psy4520 192 AKATQESDNVLIIQQ 206 (291)
Q Consensus 192 g~IeQdAD~Vi~L~R 206 (291)
.+ ..||.|+++..
T Consensus 541 -~~-~~~d~i~~l~~ 553 (582)
T 3b60_A 541 -TI-EQADEIVVVED 553 (582)
T ss_dssp -GT-TTCSEEEEEET
T ss_pred -HH-HhCCEEEEEEC
Confidence 13 35999999964
No 304
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=23.80 E-value=28 Score=30.13 Aligned_cols=59 Identities=17% Similarity=0.092 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHH---HHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 112 KLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRF---YMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 112 ~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~---~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+.+.+.++.+ ..|+++||.=++- +.+-.. .... ...+...+.|+.+|++++|+|++=+.
T Consensus 23 ~~~~~~i~~a--~~gadlvv~PE~~-~~gy~~--~~~~~a~~~~~~~~~~l~~~a~~~~~~iv~G~~ 84 (266)
T 2e11_A 23 DYYGALLEPL--AGQSDLVILPETF-TSGFSN--EAIDKAEDMDGPTVAWIRTQAARLGAAITGSVQ 84 (266)
T ss_dssp HHHHHHHGGG--TTTCSEEECCTTT-TTCSCS--GGGGGCEETTSHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHh--cCCCCEEECCCCc-cccCCh--hHHHhhccCCCHHHHHHHHHHHHhCCEEEEeee
Confidence 3344444443 5789999988873 333211 0000 01245788999999999999985443
No 305
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=23.60 E-value=1.6e+02 Score=22.08 Aligned_cols=40 Identities=8% Similarity=0.011 Sum_probs=25.4
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.....++||+|.- + .+ .+. -++++.|+.. .-++||++++.
T Consensus 48 ~~~~~dlvi~d~~-l-~~-----~~g----~~~~~~l~~~--~~~~~ii~ls~ 87 (154)
T 2rjn_A 48 KGTSVQLVISDMR-M-PE-----MGG----EVFLEQVAKS--YPDIERVVISG 87 (154)
T ss_dssp TTSCCSEEEEESS-C-SS-----SCH----HHHHHHHHHH--CTTSEEEEEEC
T ss_pred hcCCCCEEEEecC-C-CC-----CCH----HHHHHHHHHh--CCCCcEEEEec
Confidence 4566899999975 2 21 122 2356666653 34899998875
No 306
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=23.59 E-value=3.5e+02 Score=23.59 Aligned_cols=67 Identities=10% Similarity=0.094 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCccccccccc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg 192 (291)
..+..+|. .-.+-+++++|+-. .+ .|. .....+.+.|+.+++ .|++++|....
T Consensus 135 qRv~lAra--L~~~p~lllLDEPt--s~-----LD~-~~~~~l~~~L~~~~~----tviivtHd~~~------------- 187 (263)
T 2pjz_A 135 VLVRTSLA--LASQPEIVGLDEPF--EN-----VDA-ARRHVISRYIKEYGK----EGILVTHELDM------------- 187 (263)
T ss_dssp HHHHHHHH--HHTCCSEEEEECTT--TT-----CCH-HHHHHHHHHHHHSCS----EEEEEESCGGG-------------
T ss_pred HHHHHHHH--HHhCCCEEEEECCc--cc-----cCH-HHHHHHHHHHHHhcC----cEEEEEcCHHH-------------
Confidence 34444444 34667899999983 11 122 334567777777765 89999995432
Q ss_pred cccccCc-cEEEEEcc
Q psy4520 193 KATQESD-NVLIIQQK 207 (291)
Q Consensus 193 ~IeQdAD-~Vi~L~R~ 207 (291)
+.+-|| .|+++..-
T Consensus 188 -~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 188 -LNLYKEYKAYFLVGN 202 (263)
T ss_dssp -GGGCTTSEEEEEETT
T ss_pred -HHHhcCceEEEEECC
Confidence 456788 88888643
No 307
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=23.52 E-value=3e+02 Score=23.03 Aligned_cols=10 Identities=10% Similarity=-0.204 Sum_probs=4.9
Q ss_pred HHHhcCceEE
Q psy4520 162 FASRSHCHVT 171 (291)
Q Consensus 162 ~Ake~~VpVi 171 (291)
+|+++|++++
T Consensus 96 ~a~~lGa~~v 105 (270)
T 3aam_A 96 KAALLGVEYV 105 (270)
T ss_dssp HHHHHTCCEE
T ss_pred HHHHcCCCEE
Confidence 4445555544
No 308
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=23.44 E-value=1.5e+02 Score=22.77 Aligned_cols=64 Identities=9% Similarity=0.047 Sum_probs=34.8
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+.+.|++|...... ..+.....-.+-++|+|-- + ......+......+..+....++||++|.-
T Consensus 54 ~~i~Dt~G~~~~~~---~~~~~~~~~~~~i~v~d~~-------~--~~s~~~~~~~~~~~~~~~~~~~~p~i~v~n 117 (189)
T 4dsu_A 54 LDILDTAGQEEYSA---MRDQYMRTGEGFLCVFAIN-------N--TKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117 (189)
T ss_dssp EEEEECCCC---CT---THHHHHHHCSEEEEEEETT-------C--HHHHHHHHHHHHHHHHHTTCSCCCEEEEEE
T ss_pred EEEEECCCcHHHHH---HHHHHHhcCCEEEEEEECC-------C--HHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 66788888432222 2222223333345555432 1 233455666677777777777899988764
No 309
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=23.43 E-value=1.8e+02 Score=20.58 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=25.3
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
..+..++||+|.- + .+ .+.. ++++.|+. ..++||++++..
T Consensus 43 ~~~~~dlvi~d~~-l-~~-----~~g~----~~~~~l~~---~~~~~ii~~s~~ 82 (122)
T 1zgz_A 43 QNQSVDLILLDIN-L-PD-----ENGL----MLTRALRE---RSTVGIILVTGR 82 (122)
T ss_dssp HHSCCSEEEEESC-C-SS-----SCHH----HHHHHHHT---TCCCEEEEEESS
T ss_pred hcCCCCEEEEeCC-C-CC-----CChH----HHHHHHHh---cCCCCEEEEECC
Confidence 3466899999975 2 21 1222 35666665 467999988753
No 310
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase, structural genomics, NPPSFA; 1.98A {Aquifex aeolicus} PDB: 2yye_A* 2zod_A 2zau_A
Probab=23.28 E-value=1.6e+02 Score=26.94 Aligned_cols=50 Identities=10% Similarity=0.012 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 117 AVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 117 ~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
.++......+.-+.+.|+|.+ -. .. .+ .....++++.++..|++++|||+
T Consensus 89 ~lsDlaamGa~P~~~l~~l~~-p~-~~--~~-~~~l~~i~~Gi~~~~~~~gv~lv 138 (345)
T 2yyd_A 89 ALSDVYAMGGIPVNALAISCF-NN-CE--LD-IEIFREVIRGALDKLREAKTVLL 138 (345)
T ss_dssp HHHHHHHTTCEEEEEEEEEEE-CT-TT--CC-HHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHcCCchHHHheeEeC-CC-CC--CC-HHHHHHHHHHHHHHHHHcCCEEE
Confidence 334443444455889999953 21 10 12 36678899999999999999987
No 311
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=23.23 E-value=2.1e+02 Score=30.12 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 113 LVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 113 ~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
++...+..+..-..-.+|++|+.. . +.|-.....-+..-++.++++.++.|+++.|.
T Consensus 739 em~~~~~il~~a~~p~LlLLDEP~--~-----GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~ 795 (918)
T 3thx_B 739 ELTDTAEIIRKATSQSLVILDELG--R-----GTSTHDGIAIAYATLEYFIRDVKSLTLFVTHY 795 (918)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESTT--T-----TSCHHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred HHHHHHHHHHhccCCCEEEEeCCC--C-----CCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 344444444444667899999993 1 22332322222356677788889999999995
No 312
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=23.18 E-value=2.3e+02 Score=22.28 Aligned_cols=64 Identities=16% Similarity=0.052 Sum_probs=36.6
Q ss_pred CeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 99 PMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 99 pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.+.+.|++|... ........+.-++=++|+|-- + ......+......+.......++||++|.-
T Consensus 77 ~~~l~Dt~G~~~----~~~~~~~~~~~d~iilv~D~~-------~--~~s~~~~~~~~~~i~~~~~~~~~piilv~N 140 (196)
T 2atv_A 77 SMEILDTAGQED----TIQREGHMRWGEGFVLVYDIT-------D--RGSFEEVLPLKNILDEIKKPKNVTLILVGN 140 (196)
T ss_dssp EEEEEECCCCCC----CHHHHHHHHHCSEEEEEEETT-------C--HHHHHTHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred EEEEEECCCCCc----ccchhhhhccCCEEEEEEECc-------C--HHHHHHHHHHHHHHHHhhCCCCCcEEEEEE
Confidence 477889988644 122222223333345555522 1 133445556677777777778999998864
No 313
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=23.13 E-value=60 Score=25.13 Aligned_cols=71 Identities=8% Similarity=0.005 Sum_probs=43.2
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEE--eccccccCCCCCCccH---HHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVII--DNVQFMLGLSDSALDR---FYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviI--DyLqlm~~~~~~~~~r---~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
+.+.=..| +|-.-+..+++.+...+|+++-|. .+=++.. ..+ +-|- -=++.....++|..|.++|+||.++
T Consensus 9 IlL~C~aG-mSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~-~~~-~~DvvLLgPQV~y~~~~ik~~~~~~~ipV~vI 84 (108)
T 3nbm_A 9 VLVLCAGS-GTSAQLANAINEGANLTEVRVIANSGAYGAHYD-IMG-VYDLIILAPQVRSYYREMKVDAERLGIQIVAT 84 (108)
T ss_dssp EEEEESSS-SHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTT-TGG-GCSEEEECGGGGGGHHHHHHHHTTTTCEEEEC
T ss_pred EEEECCCC-CCHHHHHHHHHHHHHHCCCceEEEEcchHHHHh-hcc-CCCEEEEChHHHHHHHHHHHHhhhcCCcEEEe
Confidence 44444455 566778999999999999987773 3322110 000 0000 0113345678899999999999876
No 314
>3k7b_A Protein A33; C-type lectin-like domain, homodimer, poxvirus, EEV, EV, VIR protein; 2.10A {Vaccinia virus WR}
Probab=23.13 E-value=48 Score=25.65 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=29.6
Q ss_pred ceeeeceEeEEeeCCCCchhhhHhhhhccCCCcccC
Q psy4520 237 TATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDE 272 (291)
Q Consensus 237 ~l~f~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (291)
.+.|.+.|+.|... +.++.++.++|.+.|+.|+.-
T Consensus 13 Gi~f~~~CY~f~~~-pkTW~eA~~~C~~~G~~Lpsi 47 (96)
T 3k7b_A 13 GLYYQGSCYILHSD-YQMFSDAAANCTAESSTLPNK 47 (96)
T ss_dssp SEEETTEEEEEEEE-EECHHHHHHHHHHTTCBCCCH
T ss_pred CeeeCCeeEEEeCC-CCCHHHHHHHHHHcCCccCCc
Confidence 67788998888743 389999999999999999865
No 315
>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2
Probab=23.05 E-value=2.2e+02 Score=24.35 Aligned_cols=63 Identities=6% Similarity=-0.126 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCc---eEEEEecc
Q psy4520 111 LKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHC---HVTLVIHP 176 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~V---pVilvshp 176 (291)
.+.....++.+....|+.+|.+||-. .+.. ...........+++-++..+.++++ +|+++-|+
T Consensus 95 ~~~~~~~~~~la~~~g~~Vv~~dyrg--~g~~-~~p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S 160 (311)
T 1jji_A 95 IESHDALCRRIARLSNSTVVSVDYRL--APEH-KFPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDS 160 (311)
T ss_dssp TGGGHHHHHHHHHHHTSEEEEEECCC--TTTS-CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEET
T ss_pred hhHhHHHHHHHHHHhCCEEEEecCCC--CCCC-CCCCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeC
Confidence 34445566777767899999999973 2211 1112334456677888888888887 47777443
No 316
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=23.03 E-value=2.4e+02 Score=23.35 Aligned_cols=30 Identities=7% Similarity=0.109 Sum_probs=24.7
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 146 LDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 146 ~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
++..+...++...|+.++.+..-.|++|+|
T Consensus 120 Es~~~~~~R~~~~l~~l~~~~~~~vlvVsH 149 (213)
T 3hjg_A 120 ESLSTFSQRVSRAWSQIINDINDNLLIVTH 149 (213)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 556677788888899988887778999999
No 317
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=23.01 E-value=2e+02 Score=20.98 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=25.9
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
....++||+|.- + .+ .+. -++++.|+.. .-++||++++-.
T Consensus 47 ~~~~dlvi~d~~-l-~~-----~~g----~~~~~~l~~~--~~~~~ii~ls~~ 86 (143)
T 3jte_A 47 CNSIDVVITDMK-M-PK-----LSG----MDILREIKKI--TPHMAVIILTGH 86 (143)
T ss_dssp TTTCCEEEEESC-C-SS-----SCH----HHHHHHHHHH--CTTCEEEEEECT
T ss_pred CCCCCEEEEeCC-C-CC-----CcH----HHHHHHHHHh--CCCCeEEEEECC
Confidence 567999999976 2 21 122 2356666653 357999988753
No 318
>1h8u_A MBP, eosinophil granule major basic protein 1; lectin, eosinophil granule protein, EMBP; 1.8A {Homo sapiens} SCOP: d.169.1.1 PDB: 2brs_A*
Probab=23.00 E-value=20 Score=26.56 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=27.8
Q ss_pred eEEeeCCCCchhhhHhhhhc-cCCCcccCCCccccccc
Q psy4520 245 YIFYNRRPMNLRDSLAFCRS-RGGSLVDESNPALQGFI 281 (291)
Q Consensus 245 ~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 281 (291)
+.|++ ...++.++.++|.+ .||.|+.-.|++-+-||
T Consensus 4 Y~~~~-~~~tw~~A~~~C~~~~g~~La~i~s~~e~~~l 40 (117)
T 1h8u_A 4 YLLVR-SLQTFSQAWFTCRRCYRGNLVSIHNFNINYRI 40 (117)
T ss_dssp EEEEE-EEECHHHHHHHHHHHHSSEECCCCSHHHHHHH
T ss_pred EEEeC-CccCHHHHHHHhccCCCCeEEeecCHHHHHHH
Confidence 34443 45789999999999 99999988887655554
No 319
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=22.98 E-value=1.2e+02 Score=27.29 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhCCCc--EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 111 LKLVMEAVEHAMYVYDTG--HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~--lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
.+.+.+.++.+ .++|++ -||||+. + +.. .+. +.--++++.|+.|.. +++||++ -.+||.
T Consensus 154 ~~~l~~~i~~a-~~~Gi~~~~IilDPg-~--Gf~---k~~-~~n~~ll~~l~~~~~-~g~Pvl~-G~Srks 214 (280)
T 1eye_A 154 RADLLASVADA-VAAGVDPARLVLDPG-L--GFA---KTA-QHNWAILHALPELVA-TGIPVLV-GASRKR 214 (280)
T ss_dssp HHHHHHHHHHH-HHTTCCGGGEEEECC-T--TSS---CCH-HHHHHHHHTHHHHHT-TSSCBEE-CCTTCH
T ss_pred HHHHHHHHHHH-HHcCCChhhEEEECC-C--Ccc---cCH-HHHHHHHHHHHHhhc-CCCCEEE-EecchH
Confidence 34444555554 579998 8999997 2 222 121 223457888888854 9999754 667873
No 320
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=22.98 E-value=1.1e+02 Score=22.02 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=27.1
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccC
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR 177 (291)
...++||+|.- + .+ .+. -++++.|+......++||++++...
T Consensus 54 ~~~dlvi~d~~-~-~~-----~~g----~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 54 SRPDLILLXLN-L-PK-----KDG----REVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp CCCSEEEECSS-C-SS-----SCH----HHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred CCCcEEEEecC-C-Cc-----ccH----HHHHHHHHcCcccccccEEEEecCC
Confidence 56899999975 2 21 122 2467777764433689999987643
No 321
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=22.82 E-value=1.1e+02 Score=21.13 Aligned_cols=52 Identities=8% Similarity=0.085 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+.++.+..++ .+..++||+|.- + .+ .+. -++++.++......++||++++..
T Consensus 33 ~~~~~~~~l~----~~~~dlii~d~~-~-~~-----~~~----~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 33 DGSTALDQLD----LLQPIVILMAWP-P-PD-----QSC----LLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp CHHHHHHHHH----HHCCSEEEEECS-T-TC-----CTH----HHHHHHHHHTCCCSSCCCEEEESS
T ss_pred CHHHHHHHHH----hcCCCEEEEecC-C-CC-----CCH----HHHHHHHHhccccCCCCEEEEeCC
Confidence 4555554443 346899999964 2 11 122 235666665443368999988763
No 322
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=22.62 E-value=1.4e+02 Score=22.33 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+.++.++.++ ....++||+|.- + .+ .+. -++++.|+.. ..++||++++-.
T Consensus 49 ~~~~a~~~l~----~~~~dlii~d~~-l-~~-----~~g----~~~~~~l~~~--~~~~~ii~~s~~ 98 (152)
T 3eul_A 49 DGAAALELIK----AHLPDVALLDYR-M-PG-----MDG----AQVAAAVRSY--ELPTRVLLISAH 98 (152)
T ss_dssp SHHHHHHHHH----HHCCSEEEEETT-C-SS-----SCH----HHHHHHHHHT--TCSCEEEEEESC
T ss_pred CHHHHHHHHH----hcCCCEEEEeCC-C-CC-----CCH----HHHHHHHHhc--CCCCeEEEEEcc
Confidence 4555555443 356899999986 2 21 122 2356666653 458999988753
No 323
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=22.62 E-value=1.8e+02 Score=25.22 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhc--CceEEE
Q psy4520 106 HGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRS--HCHVTL 172 (291)
Q Consensus 106 ~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~--~VpVil 172 (291)
.+..+++.+.++++ ..++++|++.+.+-..+.- .+ +++|..+|+++ |++|++
T Consensus 121 ~~~~d~~~l~~~l~----~~~~~~v~~~~~~nptG~~---~~--------l~~i~~~~~~~~~~~~li~ 174 (385)
T 2bkw_A 121 GESVPLELITEKLS----QNSYGAVTVTHVDTSTAVL---SD--------LKAISQAIKQTSPETFFVV 174 (385)
T ss_dssp TSCCCHHHHHHHHH----HSCCSEEEEESEETTTTEE---CC--------HHHHHHHHHHHCTTSEEEE
T ss_pred CCCCCHHHHHHHHh----cCCCCEEEEEccCCCcCeE---cC--------HHHHHHHHHhhCCCCEEEE
Confidence 34467777766553 2468899988875332211 12 45788999999 998775
No 324
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=22.61 E-value=1.1e+02 Score=22.01 Aligned_cols=42 Identities=24% Similarity=0.205 Sum_probs=25.9
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.....++||+|.- + .+ .+. -++++.|+......++||++++.
T Consensus 46 ~~~~~dlvi~D~~-l-~~-----~~g----~~l~~~l~~~~~~~~~~ii~~s~ 87 (128)
T 1jbe_A 46 QAGGYGFVISDWN-M-PN-----MDG----LELLKTIRAXXAMSALPVLMVTA 87 (128)
T ss_dssp TTCCCCEEEEESC-C-SS-----SCH----HHHHHHHHC--CCTTCCEEEEES
T ss_pred HhcCCCEEEEeCC-C-CC-----CCH----HHHHHHHHhhcccCCCcEEEEec
Confidence 4456899999975 2 21 122 23567777644446799998875
No 325
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=22.58 E-value=1.8e+02 Score=20.67 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
+..+.++.++ .+..++||+|.- + .+ .+.. ++++.|+.. ..++||++++..
T Consensus 35 ~~~~a~~~~~----~~~~dlvl~D~~-l-~~-----~~g~----~~~~~l~~~--~~~~~ii~~s~~ 84 (124)
T 1srr_A 35 NGLQALDIVT----KERPDLVLLDMK-I-PG-----MDGI----EILKRMKVI--DENIRVIIMTAY 84 (124)
T ss_dssp SHHHHHHHHH----HHCCSEEEEESC-C-TT-----CCHH----HHHHHHHHH--CTTCEEEEEESS
T ss_pred CHHHHHHHHh----ccCCCEEEEecC-C-CC-----CCHH----HHHHHHHHh--CCCCCEEEEEcc
Confidence 4455554443 345899999975 2 21 1222 356666654 458999988763
No 326
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=22.52 E-value=2.6e+02 Score=25.06 Aligned_cols=46 Identities=4% Similarity=0.104 Sum_probs=31.9
Q ss_pred HhhcCCCeEEEcCCCC------------------CCHHHHHHHHHHHHHhCCCcEEEEecccccc
Q psy4520 93 DWFKTLPMYFLTFHGP------------------QPLKLVMEAVEHAMYVYDTGHVIIDNVQFML 139 (291)
Q Consensus 93 ~~~~~~pl~i~d~~g~------------------~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~ 139 (291)
+++.+.++++.|+... .+.++|.+.++..+.+- --.+++|.|..+.
T Consensus 112 e~~~~~~I~ViDS~~~s~g~g~~v~~A~~l~~~G~s~~eI~~~l~~~~~~~-~~~f~v~~L~~L~ 175 (297)
T 3nyi_A 112 EDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMASA-RIFFTVGSLDYLK 175 (297)
T ss_dssp HHCTTCCEEEEECSCCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-EEEEECSCSHHHH
T ss_pred hhCCCCeEEEEeCCchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-EEEEEECCHHHHH
Confidence 4455667999986542 57888888888764433 3467789996654
No 327
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=22.38 E-value=3.9e+02 Score=24.73 Aligned_cols=89 Identities=9% Similarity=0.159 Sum_probs=54.7
Q ss_pred hhhHHHHHHhhcCCCeEE----EcCC--CCCC-------HHHHHHHHHHHH-HhCCCcEEEEecccccc---CCCCCCcc
Q psy4520 85 LDKFDEYSDWFKTLPMYF----LTFH--GPQP-------LKLVMEAVEHAM-YVYDTGHVIIDNVQFML---GLSDSALD 147 (291)
Q Consensus 85 ~~~~~~a~~~~~~~pl~i----~d~~--g~~~-------i~~i~~~~r~~~-~~~gv~lviIDyLqlm~---~~~~~~~~ 147 (291)
+.++.+.+.+ ..+|+++ ++.. +..+ .+.|...+|.+. .++|+|++=+-|---+. +.+ .++.
T Consensus 149 l~rv~~ec~~-~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~-~~~~ 226 (332)
T 3iv3_A 149 IERIGSECQA-EDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFA-EGEV 226 (332)
T ss_dssp HHHHHHHHHH-HTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTC-SSCC
T ss_pred HHHHHHHHHH-cCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHHHHHhhcCcCCcEEEEecCCChhhhcccc-cccc
Confidence 3445444444 5789887 3432 2233 334888888764 67899999888763221 222 1111
Q ss_pred HHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 148 RFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 148 r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
-| .+.+....++....-..+||++++-.
T Consensus 227 ~y-~~~ea~~~f~~~~~a~~~P~v~lsgG 254 (332)
T 3iv3_A 227 VY-SKEEAAQAFREQEASTDLPYIYLSAG 254 (332)
T ss_dssp CB-CHHHHHHHHHHHHHTCSSCEEEECTT
T ss_pred cc-cHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 22 23567788888888899999988763
No 328
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=22.31 E-value=1.8e+02 Score=22.91 Aligned_cols=65 Identities=8% Similarity=0.081 Sum_probs=35.3
Q ss_pred CeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 99 PMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 99 pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
.+.+.|++|......+. +.....-++=++|+|--. ......+......+...+...++||++|.-
T Consensus 63 ~~~l~Dt~G~~~~~~~~---~~~~~~~~~~i~v~d~~~---------~~s~~~~~~~~~~i~~~~~~~~~piilv~n 127 (206)
T 2bov_A 63 QIDILDTAGQEDYAAIR---DNYFRSGEGFLCVFSITE---------MESFAATADFREQILRVKEDENVPFLLVGN 127 (206)
T ss_dssp EEEEEECCCTTCCHHHH---HHHHHHCSEEEEEEETTC---------HHHHHHHHHHHHHHHHHTTCSCCCEEEEEE
T ss_pred EEEEEcCCChhhhHHHH---HHHHhhCCEEEEEEECCC---------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 47788888854333322 222223333344444321 133445556666677666667899987764
No 329
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=22.30 E-value=2.1e+02 Score=21.26 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=34.8
Q ss_pred eEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 100 MYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 100 l~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+.+.|++|......+.. .....-..=++++|--. ......+......+...+...++|+++|.-
T Consensus 53 ~~l~D~~G~~~~~~~~~---~~~~~~~~~i~v~d~~~---------~~s~~~~~~~~~~i~~~~~~~~~piilv~n 116 (167)
T 1kao_A 53 LEILDTAGTEQFASMRD---LYIKNGQGFILVYSLVN---------QQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116 (167)
T ss_dssp EEEEECCCTTCCHHHHH---HHHHHCSEEEEEEETTC---------HHHHHHHHHHHHHHHHHTTTSCCCEEEEEE
T ss_pred EEEEECCCchhhHHHHH---HHhccCCEEEEEEeCCC---------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 77889988544333322 22233333345555321 123344555566666666667899987753
No 330
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=22.27 E-value=2.7e+02 Score=25.02 Aligned_cols=53 Identities=9% Similarity=0.128 Sum_probs=28.6
Q ss_pred HhCCCcEEEEeccccccCCCCC--CccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDS--ALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~--~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
....-.+|+||+++.+...... .......+..+...|..+....+..|++++-
T Consensus 173 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~a 227 (357)
T 3d8b_A 173 RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGA 227 (357)
T ss_dssp HHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEE
T ss_pred HhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEe
Confidence 4455689999999877543211 1122344566666676666555566666544
No 331
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=22.25 E-value=1.6e+02 Score=26.79 Aligned_cols=75 Identities=5% Similarity=-0.040 Sum_probs=47.3
Q ss_pred hhHHHHHHhhcCCCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHh
Q psy4520 86 DKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASR 165 (291)
Q Consensus 86 ~~~~~a~~~~~~~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake 165 (291)
..+.+|+.+-. +++-.+.| ++++.+....+. +..-|+..||===..-+.+. +.+.+|-+.+.++...+|++-..
T Consensus 200 ~avAkAca~~g---~~lEPTGG-Idl~Nf~~I~~i-~l~aGv~~viPHIYsSIIDk-~TG~TrpedV~~ll~~~K~l~~~ 273 (275)
T 3m6y_A 200 RAVAKACAEEG---FALEPTGG-IDKENFETIVRI-ALEANVEQVIPHVYSSIIDK-ETGNTKVEAVRELLAVVKKLVDQ 273 (275)
T ss_dssp HHHHHHHHHHT---CEEEEBSS-CCTTTHHHHHHH-HHHTTCSCBCCEECGGGBCT-TTCCBCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---ceECCCCC-ccHhHHHHHHHH-HHHcCCCeecccccceeccC-CCCCCCHHHHHHHHHHHHHHHhh
Confidence 44455555532 56666655 677777666655 57788776542222333332 35678889999999999998765
Q ss_pred c
Q psy4520 166 S 166 (291)
Q Consensus 166 ~ 166 (291)
+
T Consensus 274 ~ 274 (275)
T 3m6y_A 274 Y 274 (275)
T ss_dssp C
T ss_pred c
Confidence 4
No 332
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=22.22 E-value=1.9e+02 Score=25.07 Aligned_cols=52 Identities=25% Similarity=0.219 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 107 GPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 107 g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
+..+++.+.++++ .++.+.|++.+-+-..+ .-.+ +++|..+|+++|++|++=
T Consensus 156 ~~~d~~~l~~~i~----~~~~~~v~~~~~~nptG---~~~~--------l~~i~~l~~~~~~~li~D 207 (397)
T 3f9t_A 156 YTIDEKFVKDAVE----DYDVDGIIGIAGTTELG---TIDN--------IEELSKIAKENNIYIHVD 207 (397)
T ss_dssp SSBCHHHHHHHHH----HSCCCEEEEEBSCTTTC---CBCC--------HHHHHHHHHHHTCEEEEE
T ss_pred CcCCHHHHHHHHh----hcCCeEEEEECCCCCCC---CCCC--------HHHHHHHHHHhCCeEEEE
Confidence 3356777765553 33788888888752222 1112 566889999999988753
No 333
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=22.21 E-value=1.5e+02 Score=27.87 Aligned_cols=40 Identities=15% Similarity=0.343 Sum_probs=28.7
Q ss_pred CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 126 DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
.+.+|||.+.|-+.+.-- .+ .+.++.|..+|+++|+.+|+
T Consensus 258 ~~~~vive~v~~~~G~~~--~~-----~~~l~~l~~l~~~~g~lli~ 297 (472)
T 1ohv_A 258 TVAGIIVEPIQSEGGDNH--AS-----DDFFRKLRDISRKHGCAFLV 297 (472)
T ss_dssp CEEEEEECSSBCTTTCBC--CC-----HHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEEcCCcCCCCCCC--CC-----HHHHHHHHHHHHHhCCEEEE
Confidence 688999999864432111 11 34688999999999998884
No 334
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=22.00 E-value=1.2e+02 Score=26.79 Aligned_cols=51 Identities=4% Similarity=-0.028 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 107 GPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 107 g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+..+++.+.++++. .++++|++.+.+-..+.- .+ ++.|..+|+++|++|++
T Consensus 121 ~~~d~~~l~~~i~~----~~~~~v~~~~~~nptG~~---~~--------l~~i~~l~~~~~~~li~ 171 (416)
T 3isl_A 121 TVFDPEDIIREIKK----VKPKIVAMVHGETSTGRI---HP--------LKAIGEACRTEDALFIV 171 (416)
T ss_dssp CCCCHHHHHHHHHH----HCCSEEEEESEETTTTEE---CC--------CHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHhh----CCCcEEEEEccCCCCcee---cC--------HHHHHHHHHHcCCEEEE
Confidence 44577777665542 367999999885333211 12 56788999999998885
No 335
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=21.98 E-value=1.2e+02 Score=23.11 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+.++.++.++.. ....++||+|.- + .+ .+. -++++.||... -++||++++-
T Consensus 69 ~~~~al~~l~~~--~~~~dliilD~~-l-~~-----~~g----~~~~~~lr~~~--~~~~ii~ls~ 119 (157)
T 3hzh_A 69 DGEEAVIKYKNH--YPNIDIVTLXIT-M-PK-----MDG----ITCLSNIMEFD--KNARVIMISA 119 (157)
T ss_dssp SHHHHHHHHHHH--GGGCCEEEECSS-C-SS-----SCH----HHHHHHHHHHC--TTCCEEEEES
T ss_pred CHHHHHHHHHhc--CCCCCEEEEecc-C-CC-----ccH----HHHHHHHHhhC--CCCcEEEEec
Confidence 456655554331 115799999986 2 21 122 23566676543 6799998875
No 336
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=21.83 E-value=1.7e+02 Score=26.63 Aligned_cols=73 Identities=12% Similarity=0.172 Sum_probs=43.9
Q ss_pred CCCeEEEcCCCCCC----H----HHHHHHHHHHHHhCCCc--EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhc
Q psy4520 97 TLPMYFLTFHGPQP----L----KLVMEAVEHAMYVYDTG--HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRS 166 (291)
Q Consensus 97 ~~pl~i~d~~g~~~----i----~~i~~~~r~~~~~~gv~--lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~ 166 (291)
..|+-+.-..|... + +.+.+.++.+ .+.|++ -||||+. + +.+. +- +.--++++.|+.|.. +
T Consensus 159 g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a-~~~GI~~~~IilDPg-~--Gfgk---~~-~~n~~ll~~l~~l~~-l 229 (297)
T 1tx2_A 159 DVPIILMHNRDNMNYRNLMADMIADLYDSIKIA-KDAGVRDENIILDPG-I--GFAK---TP-EQNLEAMRNLEQLNV-L 229 (297)
T ss_dssp TCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHH-HHTTCCGGGEEEECC-T--TSSC---CH-HHHHHHHHTGGGGGG-G
T ss_pred CCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHH-HHcCCChhcEEEeCC-C--CcCC---CH-HHHHHHHHHHHHHHh-C
Confidence 46777766554333 3 3344444444 579998 8999997 2 2121 21 122357888887654 8
Q ss_pred CceEEEEeccCCc
Q psy4520 167 HCHVTLVIHPRKE 179 (291)
Q Consensus 167 ~VpVilvshpRk~ 179 (291)
++||++ -.+||.
T Consensus 230 g~Pvl~-G~Srks 241 (297)
T 1tx2_A 230 GYPVLL-GTSRKS 241 (297)
T ss_dssp CSCBEE-ECTTCH
T ss_pred CCCEEE-Eeccch
Confidence 999765 556765
No 337
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=21.75 E-value=1.3e+02 Score=23.64 Aligned_cols=41 Identities=2% Similarity=0.011 Sum_probs=26.5
Q ss_pred HhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 123 YVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 123 ~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
..+..++||+|.- |.+ .+-. ++++.|+.. ..++||++++-.
T Consensus 48 ~~~~~dlvl~D~~--lp~-----~~g~----~~~~~l~~~--~~~~~ii~lt~~ 88 (184)
T 3rqi_A 48 GAEKFEFITVXLH--LGN-----DSGL----SLIAPLCDL--QPDARILVLTGY 88 (184)
T ss_dssp TTSCCSEEEECSE--ETT-----EESH----HHHHHHHHH--CTTCEEEEEESS
T ss_pred hhCCCCEEEEecc--CCC-----ccHH----HHHHHHHhc--CCCCCEEEEeCC
Confidence 5577999999975 322 1222 356666653 458999988753
No 338
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=21.71 E-value=90 Score=27.32 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 107 GPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 107 g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+..+++.+.++++. +++++|++.+.+-..+.- .+ +++|..+|+++|+.|++
T Consensus 133 ~~~d~~~l~~~i~~----~~~~~v~~~~~~nptG~~---~~--------l~~i~~l~~~~~~~li~ 183 (393)
T 3kgw_A 133 EHYTLQEVEEGLAQ----HKPVLLFLVHGESSTGVV---QP--------LDGFGELCHRYQCLLLV 183 (393)
T ss_dssp CCCCHHHHHHHHHH----HCCSEEEEESEETTTTEE---CC--------CTTHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHhh----CCCcEEEEeccCCcchhh---cc--------HHHHHHHHHHcCCEEEE
Confidence 44677777665543 478999999885322211 12 55788999999998875
No 339
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12
Probab=21.67 E-value=2.8e+02 Score=23.19 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 150 YMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 150 ~~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
..|.+..+..-.+|+++|+||+ .|.|+.
T Consensus 110 ~~q~~~f~~~~~~a~~~~~Pv~--iH~~~a 137 (259)
T 1zzm_A 110 ERQQWLLDEQLKLAKRYDLPVI--LHSRRT 137 (259)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEE--EEEESC
T ss_pred HHHHHHHHHHHHHHHHhCCcEE--EEeccc
Confidence 5577888888999999999976 576654
No 340
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Probab=21.64 E-value=2.3e+02 Score=24.86 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEEeccCCc
Q psy4520 150 YMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179 (291)
Q Consensus 150 ~~~~~i~r~LK~~Ake~~VpVilvshpRk~ 179 (291)
..|.++.+..-.+|+++|+||+ .|.|+.
T Consensus 123 ~~Q~~~f~~ql~lA~~~~lPv~--iH~r~a 150 (301)
T 2xio_A 123 DTQLKYFEKQFELSEQTKLPMF--LHCRNS 150 (301)
T ss_dssp HHHHHHHHHTHHHHHHHCCCEE--EEEESC
T ss_pred HHHHHHHHHHHHHHHHhCCcEE--EEecCc
Confidence 5577889999999999999987 465654
No 341
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=21.48 E-value=1.1e+02 Score=22.24 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=25.1
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccC
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR 177 (291)
...++||+|.- + .+ .+. -++++.|++.. -.++||++++...
T Consensus 51 ~~~dlvi~D~~-l-~~-----~~g----~~~~~~l~~~~-~~~~~ii~~s~~~ 91 (136)
T 3hdv_A 51 KRIGLMITDLR-M-QP-----ESG----LDLIRTIRASE-RAALSIIVVSGDT 91 (136)
T ss_dssp TTEEEEEECSC-C-SS-----SCH----HHHHHHHHTST-TTTCEEEEEESSC
T ss_pred CCCcEEEEecc-C-CC-----CCH----HHHHHHHHhcC-CCCCCEEEEeCCC
Confidence 34899999975 2 21 122 23566666532 4679999987643
No 342
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus}
Probab=21.24 E-value=1.6e+02 Score=26.07 Aligned_cols=51 Identities=8% Similarity=-0.075 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 115 MEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 115 ~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
...++.+....+.-+.+.|++- .... .+ .....++++.++..|+++||||+
T Consensus 70 a~~lsDlaa~Ga~P~~~~~~~~--~p~~---~~-~~~l~~~~~Gi~~~~~~~g~~lv 120 (311)
T 2yxz_A 70 AATASDLLAKMGRPLGFTLGLF--LPED---LE-EGFVLELVRGAAEAAKRLGAFLL 120 (311)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEE--ECTT---CB-HHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCChhhhheeeEe--CCCC---CC-HHHHHHHHHHHHHHHHHcCCeEE
Confidence 3334444333344578888873 3211 13 36688999999999999999977
No 343
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=21.21 E-value=2.3e+02 Score=23.24 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=29.7
Q ss_pred CCcEEEEeccccccCCC-CCC-ccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 126 DTGHVIIDNVQFMLGLS-DSA-LDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 126 gv~lviIDyLqlm~~~~-~~~-~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
+.++|++-+..+-...+ .-. ......+..+.+.++++|++.+|+++=+
T Consensus 147 ~~~iil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~iD~ 196 (232)
T 3dci_A 147 VPKLLIVAPPPCVAGPGGEPAGGRDIEQSMRLAPLYRKLAAELGHHFFDA 196 (232)
T ss_dssp CCEEEEEECCCCCCCTTSSCGGGCCHHHHTTHHHHHHHHHHHHTCEEEEG
T ss_pred CCeEEEEeCCCcCcccCcccccccHHHHHHHHHHHHHHHHHHhCCeEEcc
Confidence 68899987653211101 000 0113456678889999999999998743
No 344
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=21.16 E-value=99 Score=27.40 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
.+++.+.++++ .++++|+|.+.+-..+.- .+ +++|..+|+++|++|++
T Consensus 157 ~d~~~l~~~l~-----~~~~~v~~~~~~nptG~~---~~--------l~~i~~l~~~~~~~li~ 204 (420)
T 1t3i_A 157 FDLEHFKTLLS-----EKTKLVTVVHISNTLGCV---NP--------AEEIAQLAHQAGAKVLV 204 (420)
T ss_dssp BCHHHHHHHCC-----TTEEEEEEESBCTTTCBB---CC--------HHHHHHHHHHTTCEEEE
T ss_pred cCHHHHHHhhC-----CCceEEEEeCCcccccCc---CC--------HHHHHHHHHHcCCEEEE
Confidence 56676655442 357889988875332211 12 57888999999998875
No 345
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=21.16 E-value=1.1e+02 Score=31.99 Aligned_cols=69 Identities=16% Similarity=0.067 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhC-CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccCCcCCCCcccccccc
Q psy4520 113 LVMEAVEHAMYVY-DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKENEQLTVNSVFGS 191 (291)
Q Consensus 113 ~i~~~~r~~~~~~-gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgS 191 (291)
+.+..++.+..+- +-+++|+|+=. .+ .| ...+..+.+.|+.++++ +..|++++|....
T Consensus 737 QRv~LAraL~~~p~~p~lLILDEPT--sG-----LD-~~~~~~l~~lL~~L~~~-G~tVIvisHdl~~------------ 795 (842)
T 2vf7_A 737 QRIKLATELRRSGRGGTVYVLDEPT--TG-----LH-PADVERLQRQLVKLVDA-GNTVIAVEHKMQV------------ 795 (842)
T ss_dssp HHHHHHHTTSSCCSSCEEEEEECTT--TT-----CC-HHHHHHHHHHHHHHHHT-TCEEEEECCCHHH------------
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCC--CC-----CC-HHHHHHHHHHHHHHHhC-CCEEEEEcCCHHH------------
Confidence 3444455443322 46899999883 11 12 24456788888888754 9999999996543
Q ss_pred ccccccCccEEEEE
Q psy4520 192 AKATQESDNVLIIQ 205 (291)
Q Consensus 192 g~IeQdAD~Vi~L~ 205 (291)
+ ..||.|+++.
T Consensus 796 --i-~~aDrii~L~ 806 (842)
T 2vf7_A 796 --V-AASDWVLDIG 806 (842)
T ss_dssp --H-TTCSEEEEEC
T ss_pred --H-HhCCEEEEEC
Confidence 4 4589999995
No 346
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus}
Probab=21.02 E-value=1.9e+02 Score=26.00 Aligned_cols=48 Identities=8% Similarity=-0.028 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 117 AVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 117 ~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
.++......+.-+.+.|+|.+ . + .+ .....++++.++..|+++||||+
T Consensus 69 ~lsDiaamGa~P~~~l~~l~~--p--~--~~-~~~l~~i~~Gi~~~~~~~g~~lv 116 (319)
T 3mcq_A 69 NISDMAAMGAQPRWATLTIAL--P--E--AD-EDWISKFAAGFFACAAQFDIALI 116 (319)
T ss_dssp HHHHHHHTTCEEEEEEEEEEE--S--S--CC-HHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHcCCchHHhEEEEEC--C--C--CC-HHHHHHHHHHHHHHHHHcCCeEE
Confidence 334443444455899999964 2 1 12 24688999999999999999987
No 347
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=20.97 E-value=1.1e+02 Score=21.58 Aligned_cols=50 Identities=8% Similarity=0.002 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 110 PLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
+.++.+..++ .+..++||+|.- + .+. .+. -++++.|+......++||+++
T Consensus 37 ~~~~a~~~~~----~~~~dlvi~d~~-~-~~~----~~g----~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 37 DGKGSVEQIR----RDRPDLVVLAVD-L-SAG----QNG----YLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp CHHHHHHHHH----HHCCSEEEEESB-C-GGG----CBH----HHHHHHHHHSTTTTTSCEEEE
T ss_pred CHHHHHHHHH----hcCCCEEEEeCC-C-CCC----CCH----HHHHHHHhcCccccCCCEEEE
Confidence 4555554443 345899999976 2 201 122 236777776554578999988
No 348
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A*
Probab=20.93 E-value=1.2e+02 Score=27.61 Aligned_cols=52 Identities=10% Similarity=0.103 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
+...++.+....+.-+.+.|+|.+ ... .+ .....++++.++..|+++||||+
T Consensus 75 va~~lsDlaamGA~P~~~~~~l~~--p~~---~~-~~~l~~i~~Gi~~~~~~~g~~lv 126 (343)
T 2z1u_A 75 VHGTVNDVSMLGARPRYLSCGFIL--EEG---LD-MDILERVVASMGKAAREAGVFIV 126 (343)
T ss_dssp HHHHHHHHHTTTEEEEEEEEEEEE--ETT---CC-HHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHcCCeeHHhheeeec--CCC---CC-HHHHHHHHHHHHHHHHHhCCEEE
Confidence 445555544444455889999965 211 12 24678899999999999999987
No 349
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=20.85 E-value=2.9e+02 Score=22.51 Aligned_cols=54 Identities=11% Similarity=-0.005 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhC-CCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHH-HHHhcCceEE
Q psy4520 114 VMEAVEHAMYVY-DTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRA-FASRSHCHVT 171 (291)
Q Consensus 114 i~~~~r~~~~~~-gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~-~Ake~~VpVi 171 (291)
+.+.++.++..+ +.++|++-..-. .. ........+..+-+.|++ +|++.+|+++
T Consensus 117 l~~~i~~l~~~~p~~~ii~~~~~p~-~~---~~~~~~~~~~~~n~~l~~~~a~~~~v~~i 172 (232)
T 1es9_A 117 IKAIVQLVNERQPQARVVVLGLLPR-GQ---HPNPLREKNRRVNELVRAALAGHPRAHFL 172 (232)
T ss_dssp HHHHHHHHHHHSTTCEEEEECCCCC-SS---SCCHHHHHHHHHHHHHHHHHHSCTTEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEecCCCC-CC---CchhHHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 444444444444 688888876632 11 111223556778888888 8999999887
No 350
>3r46_A Coiled coil helix L24D; coiled coil domain, parallel hexamer, KIH interactions, HYDR channel, synthetic biology, de novo protein; 1.75A {Synthetic} PDB: 3r48_A 3r47_A 3r3k_A* 3r48_B 3r4a_A
Probab=20.78 E-value=69 Score=19.82 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhcC
Q psy4520 152 QDTIIQEFRAFASRSH 167 (291)
Q Consensus 152 ~~~i~r~LK~~Ake~~ 167 (291)
...|.+.||.+|||+.
T Consensus 4 lkaiaqelkaiakelk 19 (35)
T 3r46_A 4 LKAIAQELKAIAKELK 19 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456777777777764
No 351
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=20.76 E-value=2.6e+02 Score=24.26 Aligned_cols=52 Identities=4% Similarity=0.050 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEE
Q psy4520 109 QPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLV 173 (291)
Q Consensus 109 ~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilv 173 (291)
.+++.+.+++ ..++++|+|.+.+-..+.- .+. +-+++|..+|+++|++|++=
T Consensus 144 ~d~~~l~~~l-----~~~~~~v~i~~p~nptG~~---~~~-----~~l~~l~~~~~~~~~~li~D 195 (383)
T 3kax_A 144 IDFEHLEKQF-----QQGVKLMLLCSPHNPIGRV---WKK-----EELTKLGSLCTKYNVIVVAD 195 (383)
T ss_dssp CCHHHHHHHH-----TTTCCEEEEESSBTTTTBC---CCH-----HHHHHHHHHHHHHTCEEEEE
T ss_pred EcHHHHHHHh-----CcCCeEEEEeCCCCCCCcC---cCH-----HHHHHHHHHHHHCCCEEEEE
Confidence 4677776554 4678999987775322211 121 12777888899999998853
No 352
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=20.75 E-value=1.1e+02 Score=24.48 Aligned_cols=96 Identities=5% Similarity=0.043 Sum_probs=50.9
Q ss_pred HHHHHHhhcC-CCeEEEcCCCCCCHHHHHHHHHHHHHhCCCcEEEEecccccc-CCC-------CCCccHHHHHHHHHHH
Q psy4520 88 FDEYSDWFKT-LPMYFLTFHGPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFML-GLS-------DSALDRFYMQDTIIQE 158 (291)
Q Consensus 88 ~~~a~~~~~~-~pl~i~d~~g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~-~~~-------~~~~~r~~~~~~i~r~ 158 (291)
+.++.+.+.+ -.+|+....+ +.. +..-+.+.-.+.|....++.....-. ..+ .++.+ .++++
T Consensus 30 i~~~~~~i~~a~~I~i~G~G~--S~~-~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~sG~t-----~~~~~- 100 (180)
T 1jeo_A 30 LDSLIDRIIKAKKIFIFGVGR--SGY-IGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRT-----ESVLT- 100 (180)
T ss_dssp HHHHHHHHHHCSSEEEECCHH--HHH-HHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESSSCC-----HHHHH-
T ss_pred HHHHHHHHHhCCEEEEEeecH--HHH-HHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCCCCc-----HHHHH-
Confidence 3334444432 2588877533 222 33333332345777766665442111 111 11222 12333
Q ss_pred HHHHHHhcCceEEEEeccCCcCCCCccccccccccccccCccEEEEEc
Q psy4520 159 FRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSAKATQESDNVLIIQQ 206 (291)
Q Consensus 159 LK~~Ake~~VpVilvshpRk~ek~p~lsDLrgSg~IeQdAD~Vi~L~R 206 (291)
.-+.||+.|++|+++..+.. | +.+.||.++.+.-
T Consensus 101 ~~~~ak~~g~~vi~IT~~~~------------s--l~~~ad~~l~~~~ 134 (180)
T 1jeo_A 101 VAKKAKNINNNIIAIVCECG------------N--VVEFADLTIPLEV 134 (180)
T ss_dssp HHHHHHTTCSCEEEEESSCC------------G--GGGGCSEEEECCC
T ss_pred HHHHHHHCCCcEEEEeCCCC------------h--HHHhCCEEEEeCC
Confidence 33678899999999965432 4 8889999988764
No 353
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=20.70 E-value=42 Score=24.98 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=29.3
Q ss_pred Hh-CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 123 YV-YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 123 ~~-~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
.. ...++||+|.- + .+ +.+. -++++.||......++||++++..
T Consensus 46 ~~~~~~dlvi~D~~-l-~~----~~~g----~~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 46 KDLDSITLIIMDIA-F-PV----EKEG----LEVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp TTCCCCSEEEECSC-S-SS----HHHH----HHHHHHHHHSGGGTTCCEEEEESC
T ss_pred hcCCCCcEEEEeCC-C-CC----CCcH----HHHHHHHHhCcccCCCCEEEEeCC
Confidence 44 67899999975 2 10 0121 346777877666789999998753
No 354
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=20.66 E-value=1.4e+02 Score=21.77 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=26.2
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEecc
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHP 176 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshp 176 (291)
...++||+|.- + .+ .+. -++++.|+......++||++++..
T Consensus 58 ~~~dlii~D~~-l-~~-----~~g----~~~~~~l~~~~~~~~~~ii~ls~~ 98 (143)
T 2qvg_A 58 IHPKLILLDIN-I-PK-----MNG----IEFLKELRDDSSFTDIEVFVLTAA 98 (143)
T ss_dssp CCCSEEEEETT-C-TT-----SCH----HHHHHHHTTSGGGTTCEEEEEESC
T ss_pred CCCCEEEEecC-C-CC-----CCH----HHHHHHHHcCccccCCcEEEEeCC
Confidence 56899999975 2 21 122 235666665443468999998763
No 355
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=20.64 E-value=2.1e+02 Score=26.23 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 107 GPQPLKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 107 g~~~i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
+..+++++.++++.. ...+++|++-+.+-..+.- .+ +..|.++|+++||+|++
T Consensus 197 ~~~d~~~l~~~i~~~--~~~~~lv~~~~~~n~tG~~---~~--------l~~i~~la~~~g~~vi~ 249 (465)
T 3e9k_A 197 ETLRIEDILEVIEKE--GDSIAVILFSGVHFYTGQH---FN--------IPAITKAGQAKGCYVGF 249 (465)
T ss_dssp SSCCHHHHHHHHHHH--GGGEEEEEEESBCTTTCBB---CC--------HHHHHHHHHHTTCEEEE
T ss_pred CccCHHHHHHHHHhc--CCCeEEEEEeCcccCccee---ec--------HHHHHHHHHHcCCEEEE
Confidence 445788887766531 2358899999987544321 12 46677899999998884
No 356
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=20.61 E-value=4.5e+02 Score=23.30 Aligned_cols=100 Identities=12% Similarity=0.075 Sum_probs=54.5
Q ss_pred CCCeEEEcC--CC-CCCHHHHHHHHHH---HHHhCCCc--EEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhc--
Q psy4520 97 TLPMYFLTF--HG-PQPLKLVMEAVEH---AMYVYDTG--HVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRS-- 166 (291)
Q Consensus 97 ~~pl~i~d~--~g-~~~i~~i~~~~r~---~~~~~gv~--lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~-- 166 (291)
..|+-+.-. .| ..+++++++-++. ...++|++ -||||+. +..- + ++ . +.--++++.++.|.+..
T Consensus 125 ~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg-~gfi-g-k~-~--~~~~~~l~~l~~~~~~~~p 198 (271)
T 2yci_X 125 EAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPL-ILPV-N-VA-Q--EHAVEVLETIRQIKLMANP 198 (271)
T ss_dssp TCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECC-CCCT-T-TS-T--HHHHHHHHHHHHHTTSSSS
T ss_pred CCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecC-CCcc-c-cC-H--HHHHHHHHHHHHHHHhCCC
Confidence 556666554 33 2355554443332 23579988 4999999 3220 2 11 1 22235888998885544
Q ss_pred CceEEEEeccCCcCCCC---ccccccccccccccCccEEE
Q psy4520 167 HCHVTLVIHPRKENEQL---TVNSVFGSAKATQESDNVLI 203 (291)
Q Consensus 167 ~VpVilvshpRk~ek~p---~lsDLrgSg~IeQdAD~Vi~ 203 (291)
++||++ -.+||....| .+.-..=...++.-+|.+++
T Consensus 199 ~~p~l~-G~Snksfg~~~r~~l~~t~~~~a~~~g~~~~iv 237 (271)
T 2yci_X 199 APRTVL-GLSNVSQKCPDRPLINRTYLVMAMTAGLDAAIM 237 (271)
T ss_dssp CCEEEE-EGGGGGTTCSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCEEE-eeCccccCCchHHHHHHHHHHHHHHHhCCcEEE
Confidence 499765 5677776333 12222222345666776665
No 357
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=20.47 E-value=1.1e+02 Score=26.92 Aligned_cols=60 Identities=8% Similarity=0.120 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHhCC-CcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEec
Q psy4520 110 PLKLVMEAVEHAMYVYD-TGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIH 175 (291)
Q Consensus 110 ~i~~i~~~~r~~~~~~g-v~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvsh 175 (291)
+..++...+.......+ -.+||||+++.+..... . ..+..+.+.+..+ ...++.|+++++
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---~--~~l~~l~~~~~~~-~~~~~~~I~~~~ 171 (386)
T 2qby_A 111 SIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---D--DILYKLSRINSEV-NKSKISFIGITN 171 (386)
T ss_dssp CHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---S--THHHHHHHHHHSC-CC--EEEEEEES
T ss_pred CHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc---C--HHHHHHhhchhhc-CCCeEEEEEEEC
Confidence 56776666665555555 66999999987654321 1 1122233322221 455777788777
No 358
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=20.43 E-value=1.8e+02 Score=28.89 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccC
Q psy4520 111 LKLVMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 111 i~~i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR 177 (291)
..+..+.||.+..+-.-+++++|+=.- +- |. ..+..+.+-|+.++++ ++.|++|.|..
T Consensus 207 e~QRv~iArAL~~~p~~~lLlLDEPts--gL-----D~-~~~~~l~~~l~~l~~~-g~tvi~vtHd~ 264 (670)
T 3ux8_A 207 EAQRIRLATQIGSRLTGVLYVLDEPSI--GL-----HQ-RDNDRLIATLKSMRDL-GNTLIVVEHDE 264 (670)
T ss_dssp HHHHHHHHHHHHTCCCSCEEEEECTTT--TC-----CG-GGHHHHHHHHHHHHHT-TCEEEEECCCH
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCcc--CC-----CH-HHHHHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 345666667665444445999999842 11 11 2245677777888654 99999999953
No 359
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=20.38 E-value=1.9e+02 Score=20.75 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=25.5
Q ss_pred hCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEEEeccC
Q psy4520 124 VYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPR 177 (291)
Q Consensus 124 ~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVilvshpR 177 (291)
....++||+|.- + .+ .+. -++++.||.. ..++||++++...
T Consensus 44 ~~~~dlii~d~~-l-~~-----~~g----~~~~~~l~~~--~~~~~ii~~s~~~ 84 (134)
T 3f6c_A 44 TLKPDIVIIDVD-I-PG-----VNG----IQVLETLRKR--QYSGIIIIVSAKN 84 (134)
T ss_dssp HHCCSEEEEETT-C-SS-----SCH----HHHHHHHHHT--TCCSEEEEEECC-
T ss_pred hcCCCEEEEecC-C-CC-----CCh----HHHHHHHHhc--CCCCeEEEEeCCC
Confidence 346899999976 2 21 122 2356667653 4589999887633
No 360
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Probab=20.34 E-value=1.4e+02 Score=26.87 Aligned_cols=52 Identities=8% Similarity=0.074 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEE
Q psy4520 114 VMEAVEHAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVT 171 (291)
Q Consensus 114 i~~~~r~~~~~~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVi 171 (291)
+...++.+....+.-+.+.|+|.+ ... .......++++.++..|+++||+|+
T Consensus 78 va~~lsDl~a~Ga~P~~~~~~l~~--p~~----~~~~~l~~~~~Gi~~~~~~~g~~lv 129 (338)
T 2z1e_A 78 VSGTVNDLAVMGAEPIALANSMII--GEG----LDMEVLKRVLKSMDETAREVPVPIV 129 (338)
T ss_dssp HHHHHHHHHTTTCEEEEEEEEEEE--ETT----CCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHcCCchhHhEEEEec--CCC----CCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 455555554444556889999954 211 2246688999999999999999987
No 361
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=20.10 E-value=1.5e+02 Score=27.36 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=27.9
Q ss_pred CCCcEEEEeccccccCCCCCCccHHHHHHHHHHHHHHHHHhcCceEEE
Q psy4520 125 YDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTL 172 (291)
Q Consensus 125 ~gv~lviIDyLqlm~~~~~~~~~r~~~~~~i~r~LK~~Ake~~VpVil 172 (291)
..+..||+.+.|=.-+.-. .+ .+.+++|..+|+++|+.+|+
T Consensus 226 ~~~aavi~ep~~~~gG~~~--~~-----~~~l~~l~~l~~~~g~~lI~ 266 (451)
T 3oks_A 226 DNLAAVVIEPIQGEGGFIV--PA-----DGFLPTLLDWCRKNDVVFIA 266 (451)
T ss_dssp GGEEEEEECSSBTTTTCBC--CC-----TTHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEEEcCCcCCCCccC--CC-----HHHHHHHHHHHHHcCCEEEE
Confidence 5688999999863321110 01 22578899999999998885
Done!