RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4520
(291 letters)
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET:
DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11
e.13.1.2
Length = 503
Score = 97.9 bits (243), Expect = 4e-23
Identities = 23/214 (10%), Positives = 64/214 (29%), Gaps = 41/214 (19%)
Query: 1 MSEYSLDLALQ-GVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPM 59
+ + +L G E + A ++ R L + E + K
Sbjct: 259 VRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKF--- 315
Query: 60 YFLTFHGPQPLKLVMELVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVMEAVE 119
+ + F + ++ +
Sbjct: 316 ----------------------------DQWFDELFGNDTFHLYDSFAEAETDRLLAKLA 347
Query: 120 HAMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFASRSHCHVTLVIHPRKE 179
+ +I+D++ ++ S + D M D ++ + + FA + + ++ H +
Sbjct: 348 YMRSGLGCDVIILDHISIVVSASGES-DERKMIDNLMTKLKGFAKSTGVVLVVICHLKNP 406
Query: 180 NEQ--------LTVNSVFGSAKATQESDNVLIIQ 205
++ +++ + GS Q SD ++ ++
Sbjct: 407 DKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE 440
>1sl6_A C-type lectin DC-signr; sugar binding protein; HET: GAL NDG FUC;
2.25A {Homo sapiens} SCOP: d.169.1.1 PDB: 1xar_A
Length = 184
Score = 44.1 bits (104), Expect = 1e-05
Identities = 23/95 (24%), Positives = 30/95 (31%), Gaps = 8/95 (8%)
Query: 193 KATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGSTATYNGKCYIFYNRRP 252
KA QQ+ Q L K CP T + G CY N +
Sbjct: 20 KAAVGELPDQSKQQQIYQELTDLKTAFERLCRHCP------KDWTF-FQGNCYFMSNSQ- 71
Query: 253 MNLRDSLAFCRSRGGSLVDESNPALQGFISWELSG 287
N DS+ C+ LV Q F+ + S
Sbjct: 72 RNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSR 106
>1wk1_A Hypothetical protein YK1067A12; lectin C-type domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Caenorhabditis elegans} SCOP:
d.169.1.1
Length = 150
Score = 43.3 bits (102), Expect = 1e-05
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 235 GSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
GS+ + K + +++ + FC S GG L D+ F S
Sbjct: 1 GSSGSSGVKFLTVNDDI-LSMPQARNFCASAGGYLADDLGDDKNNFYS 47
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin,
C-type lectin, alpha-helical coiled coil, carbohydrate
recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP:
d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A*
3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A*
2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A*
1b08_A 3g84_A* ...
Length = 177
Score = 42.8 bits (101), Expect = 3e-05
Identities = 9/70 (12%), Positives = 20/70 (28%), Gaps = 1/70 (1%)
Query: 213 ELKKFLQALPIERCPQFRDQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDE 272
L+ +Q L + + + + K + ++ C GG L
Sbjct: 35 ALQGQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFV-KPFTEAQLLCTQAGGQLASP 93
Query: 273 SNPALQGFIS 282
+ A +
Sbjct: 94 RSAAENAALQ 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 4e-05
Identities = 47/264 (17%), Positives = 87/264 (32%), Gaps = 79/264 (29%)
Query: 6 LDLALQGVTTLWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYF--LT 63
LD+ + L F + + R ++ + ++D K ++ FK + + T
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI---FKEINEHSTSYT 1718
Query: 64 FHGP----------QP-LKLV----MELVRKPLLDNLDKFD------EYS---------- 92
F QP L L+ E ++ L D EY+
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS 1778
Query: 93 --DWFKTLPMYFLTFH-GPQPLKLVMEAV---EHAMYVYDTGHVIIDNVQFMLGLSDSAL 146
+ + F+ G + AV E Y G + I+ + S AL
Sbjct: 1779 IESLVE------VVFYRG----MTMQVAVPRDELGRSNY--GMIAINPGRVAASFSQEAL 1826
Query: 147 DRFYMQDTIIQEFRAFASRSHCHVTLV---IHPRKENEQLTVNSVFGSAKATQESDNVLI 203
+++ R+ V +V + EN+Q V + G +A NVL
Sbjct: 1827 QY------VVERV---GKRTGWLVEIVNYNV----ENQQ-YVAA--GDLRALDTVTNVL- 1869
Query: 204 IQQKFN--QNLELKKFLQALPIER 225
F Q +++ + ++L +E
Sbjct: 1870 ---NFIKLQKIDIIELQKSLSLEE 1890
Score = 37.3 bits (86), Expect = 0.006
Identities = 58/391 (14%), Positives = 108/391 (27%), Gaps = 175/391 (44%)
Query: 11 QGVTTLWGSF-EVQN---------KRL---ARIMLQQLVRKPL---------------LD 42
QG T + F E+++ L + L +L+R L L+
Sbjct: 163 QGNTDDY--FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 43 NLDKF-DEYSDWFKT----LPMYFLT----------FHGPQPLKLVMEL-----VRKPLL 82
N D+ D+ + P+ + G P +L L + L+
Sbjct: 221 NPSNTPDK--DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 83 --------DNLDKFDEYSDWFKTLPMYFLTFHG-------PQ---PLKLVMEAVEHAMYV 124
D+ + F K + + F F G P P ++ +++E+
Sbjct: 279 TAVAIAETDSWESFFVSVR--KAITVLF--FIGVRCYEAYPNTSLPPSILEDSLEN---- 330
Query: 125 YDTGHVIIDNVQFML---GLSDSALDRFYMQDTIIQEFRA-FASRSHCHVTL-------V 173
ML L+ + + + + + + ++L V
Sbjct: 331 ---NE---GVPSPMLSISNLTQEQVQDY------VNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 174 I--HP----------RK-----ENEQ----------------LTVNSVFGS---AKATQE 197
+ P RK +Q L V S F S A+
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD- 437
Query: 198 SDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGSTATYNGKCYIFYNRRPMNLRD 257
LI + N+ + + + P + T++G +LR
Sbjct: 438 ----LINKDLVKNNVSFNA--KDI---QIPVY--------DTFDGS----------DLRV 470
Query: 258 SLAFCRSRGGSLVDE--SNPALQGFISWELS 286
S +VD P + WE +
Sbjct: 471 ---LSGSISERIVDCIIRLP-----VKWETT 493
>2ox9_A Collectin placenta 1; C-type lectin, sugar binding protein; HET:
GAL NAG FUC; 1.95A {Mus musculus} PDB: 2ox8_A
Length = 140
Score = 41.6 bits (98), Expect = 5e-05
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFISWELSG 287
PP + KCY +++ D+ FC + LV ++ Q +I G
Sbjct: 6 PPHWKN-FTDKCY-YFSLEKEIFEDAKLFCEDKSSHLVFINSREEQQWIKKHTVG 58
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense,
metalloprotein, sugar binding protein; 1.90A {Rattus
norvegicus} SCOP: d.169.1.1 h.1.1.1
Length = 168
Score = 41.6 bits (98), Expect = 6e-05
Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 1/70 (1%)
Query: 213 ELKKFLQALPIERCPQFRDQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDE 272
++ + L + + K ++ + R M A C G++
Sbjct: 27 NMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNHER-MPFSKVKALCSELRGTVAIP 85
Query: 273 SNPALQGFIS 282
N I
Sbjct: 86 RNAEENKAIQ 95
>1tn3_A Tetranectin; plasminogen binding, kringle 4, C-type lectin,
carbohydrate recognition domain; 2.00A {Homo sapiens}
SCOP: d.169.1.1 PDB: 1rjh_A 3l9j_C
Length = 137
Score = 40.8 bits (96), Expect = 8e-05
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
G+ + KC++ + + ++ C SRGG+L + +
Sbjct: 7 LKGTK--VHMKCFLAFTQT-KTFHEASEDCISRGGTLSTPQTGSENDALY 53
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate
binding, lectin, mannose, sugar BIND protein; 1.80A
{Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A
3pak_A
Length = 148
Score = 40.8 bits (96), Expect = 1e-04
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Query: 215 KKFLQALPIERCPQFRDQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESN 274
+ LQ + + GS + K + N + +N C GG++
Sbjct: 16 HQILQTMGVLSLQ-------GSMLSVGDKVF-STNGQSVNFDTIKEMCTRAGGNIAVPRT 67
Query: 275 PALQGFI 281
P I
Sbjct: 68 PEENEAI 74
>1jwi_A Bitiscetin; domain swapping, C-type lectin, toxin; 2.00A {Bitis
arietans} SCOP: d.169.1.1 PDB: 1uex_A
Length = 131
Score = 40.5 bits (95), Expect = 1e-04
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFISWELSGLPDS 291
P ++ Y G CY ++ D+ FC G L + F++ S
Sbjct: 5 LPDWSS-YKGHCY-KVFKKVGTWEDAEKFCVENSGHLASIDSKEEADFVTKLASQTLTK 61
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and
CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Length = 182
Score = 41.4 bits (97), Expect = 1e-04
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 193 KATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGSTATYNGKCYIFYNRRP 252
KA+ + + +Q +L K + + G + G Y F
Sbjct: 17 KASALNTKIRALQGSLENMSKLLKRQNDIL-QVVS------QGWKY-FKGNFYYFSLIP- 67
Query: 253 MNLRDSLAFCRSRGGSLVDESNPALQGFI 281
+ FC SR L ++ + Q F+
Sbjct: 68 KTWYSAEQFCVSRNSHLTSVTSESEQEFL 96
>2afp_A Protein (SEA raven type II antifreeze protein); recombinant SEA
raven protein, solution backbone fold, C- type lectin;
NMR {Hemitripterus americanus} SCOP: d.169.1.1
Length = 129
Score = 40.4 bits (95), Expect = 1e-04
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
P G +C +Y M + C GG L + FI
Sbjct: 8 PAGWQP-LGDRCI-YYETTAMTWALAETNCMKLGGHLASIHSQEEHSFIQ 55
>2ls8_A C-type lectin domain family 4 member D; structural genomics, NEW
YORK structural genomics research consortium, nysgrc,
PSI-biology, immune system; NMR {Homo sapiens}
Length = 156
Score = 40.5 bits (95), Expect = 1e-04
Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
P A + CY F +S C G L+ S A Q FI
Sbjct: 4 PIDWRA-FQSNCY-FPLTDNKTWAESERNCSGMGAHLMTISTEAEQNFII 51
>2vuv_A Codakine; sugar-binding protein, C-type, lectin, mannose,
invertebrate; HET: CIT; 1.3A {Codakia orbicularis} PDB:
2vuz_A*
Length = 129
Score = 40.0 bits (94), Expect = 1e-04
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281
P G T + CYI+ + + + + + C++ GG L + +
Sbjct: 3 PDGWTQ-FLDLCYIYQSAK-ASWASAQSSCQALGGILAEPDTACENEVL 49
>1hq8_A NKG2-D; homodimer, CIS-proline, apoptosis; 1.95A {Mus musculus}
SCOP: d.169.1.1 PDB: 1jsk_A 1kcg_A*
Length = 123
Score = 39.7 bits (93), Expect = 1e-04
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
+ CY F+N S A C S+ SL+ + Q F+
Sbjct: 13 HRNNCYQFFNEE-KTWNQSQASCLSQNSSLLKIYSKEEQDFLK 54
>1tdq_B Aggrecan core protein; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: d.169.1.1
Length = 130
Score = 40.0 bits (94), Expect = 1e-04
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
G T + G CY + R D+ CR + L P Q F++
Sbjct: 8 EEGWTK-FQGHCYRHFPDR-ETWVDAERRCREQQSHLSSIVTPEEQEFVN 55
>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus,
virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1
Length = 175
Score = 40.6 bits (95), Expect = 1e-04
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFISWELSG 287
+ G CY N + N DS+ C+ G LV + Q F+ + S
Sbjct: 34 FQGNCYFMSNSQ-RNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSR 80
>3bdw_A Natural killer cells antigen CD94; NK cells, receptor,
glycoprotein, lectin, signal-A transmembrane, immune
system receptor; 2.50A {Homo sapiens} SCOP: d.169.1.1
PDB: 3cdg_J 1b6e_A 3cii_G
Length = 123
Score = 39.7 bits (93), Expect = 2e-04
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
Y CY + + +S C S+ SL+ N F+S
Sbjct: 12 YRCNCYFISSEQ-KTWNESRHLCASQKSSLLQLQNTDELDFMS 53
>2xr6_A CD209 antigen; sugar binding protein, carbohydrate binding,
mannose; HET: MAN 07B; 1.35A {Homo sapiens} PDB: 1sl4_A*
2it6_A* 1k9i_A* 2xr5_A* 1sl5_A* 2it5_A* 1xph_A 1k9j_A*
Length = 170
Score = 40.6 bits (95), Expect = 2e-04
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
+ G CY N + N DS+ C+ G LV + Q F+
Sbjct: 29 FQGNCYFMSNSQ-RNWHDSITACKEVGAQLVVIKSAEEQNFLQ 70
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled
coil, C-type lectin, carbohydrate recognition domain;
2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Length = 182
Score = 40.6 bits (95), Expect = 2e-04
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 213 ELKKFLQALP-----IERCPQFRDQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGG 267
ELK L L ++ + T + KC++ + + ++ C SRGG
Sbjct: 26 ELKSRLDTLSQEVALLKEQQALQTVCLKGT-KVHMKCFLAFTQT-KTFHEASEDCISRGG 83
Query: 268 SLVDESNPALQGFI 281
+L + +
Sbjct: 84 TLSTPQTGSENDAL 97
>3c22_A C-type lectin domain family 4 member K; coiled coil, glycoprotein,
membrane, signal-anchor, transmembrane, immune system,
sugar binding protein; 1.50A {Homo sapiens} PDB: 3p5g_A*
3p5d_A* 3p5f_A* 3p5e_A* 3p5h_A* 3p5i_A* 3p7g_A* 3p7f_A*
3p7h_A* 3bc7_A* 3bbs_A* 3bc6_A*
Length = 156
Score = 40.1 bits (94), Expect = 2e-04
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 209 NQNLELKKFLQALPIERCPQFRDQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGS 268
Q +++ +Q ++ G + G Y +++ P + FC SR
Sbjct: 6 PQFEKIEGRMQNDILQVVS------QGWKY-FKGNFY-YFSLIPKTWYSAEQFCVSRNSH 57
Query: 269 LVDESNPALQGFI 281
L ++ + Q F+
Sbjct: 58 LTSVTSESEQEFL 70
>2zib_A Type II antifreeze protein; thermal hysteresis, lectin; 1.34A
{Brachyopsis rostratus}
Length = 133
Score = 39.6 bits (93), Expect = 2e-04
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
P G T + +C+ + M + A C ++GG L + Q +I
Sbjct: 11 PAGWTL-HGQRCF-YSEATAMTWDLAEANCVNKGGHLASIHSLEEQLYIK 58
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 2e-04
Identities = 41/268 (15%), Positives = 82/268 (30%), Gaps = 55/268 (20%)
Query: 19 SFEVQNKRLARIMLQQLVRKPL--LDN------LDKFDEYSDWFKTLPMYFLT------- 63
L R++ + L L N + F+ K L LT
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC---KIL----LTTRFKQVT 278
Query: 64 --FHGPQPLKLVMELVRKPLL--DNLDKFDEYSDW-FKTLPMYFLTFHGPQPLKLVMEAV 118
+ ++ L + +Y D + LP LT + P+ L ++ E++
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESI 337
Query: 119 EHAMYVYDT-GHVIIDNVQFMLGLSDSALDRFYMQDTIIQEFRAFAS-RSHCHV---TLV 173
+ +D HV D + ++ S + L+ + + F + H+ L
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR----KMFDRLSVFPPSAHIPTILLS 393
Query: 174 I---HPRKENEQLTVNSVFGSAKATQESDNVLI--------IQQKFNQNLEL-KKFLQAL 221
+ K + + VN + + ++ I ++ K L + +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 222 PIERCPQFRDQPPGSTATYNGKCYIFYN 249
I + D P Y FY+
Sbjct: 454 NIPKTFDSDDLIPPYLDQY------FYS 475
Score = 41.0 bits (95), Expect = 4e-04
Identities = 20/164 (12%), Positives = 57/164 (34%), Gaps = 32/164 (19%)
Query: 16 LWGSFEVQNKRLARIMLQQLVRKPLLDNLDKFDEYSDWFKTLPMYFLTFHGPQPLKLVME 75
+W + +++ +L + L++ K S +P +L + +
Sbjct: 395 IWFDVIKSD---VMVVVNKLHKYSLVEKQPKESTIS-----IPSIYLELKVKLENEYALH 446
Query: 76 LVRKPLLDNLDKFDEYSDWFKTLP---MYFLTF---HGPQPLKLVMEAVEHAMYVYDTGH 129
+ ++D+ + + P YF + H ++ +EH +
Sbjct: 447 ---RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--------LKNIEHPERMTLFRM 495
Query: 130 VIIDNVQFM---LGLSDSALD-RFYMQDTIIQ--EFRAFASRSH 167
V +D +F+ + +A + + +T+ Q ++ + +
Sbjct: 496 VFLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
>1dv8_A Asialoglycoprotein receptor 1; C-type lectin CRD, signaling
protein; 2.30A {Homo sapiens} SCOP: d.169.1.1
Length = 128
Score = 39.3 bits (92), Expect = 2e-04
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
+ CY +++R D+ +CR LV ++ Q F+
Sbjct: 8 HERSCY-WFSRSGKAWADADNYCRLEDAHLVVVTSWEEQKFVQ 49
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP:
d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A*
1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1*
2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1*
1fif_A 1fih_A*
Length = 149
Score = 39.6 bits (93), Expect = 3e-04
Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 1/70 (1%)
Query: 213 ELKKFLQALPIERCPQFRDQPPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDE 272
++ + L + + K ++ + R M A C G++
Sbjct: 8 NMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNHER-MPFSKVKALCSELRGTVAIP 66
Query: 273 SNPALQGFIS 282
N I
Sbjct: 67 RNAEENKAIQ 76
>2py2_A Antifreeze protein type II; type II antifreeze protein; 1.70A
{Clupea harengus}
Length = 136
Score = 39.3 bits (92), Expect = 3e-04
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
+NG+C+ +N ++ D+ C G +L + F+
Sbjct: 11 FNGRCF-LFNPLQLHWADAQESCMKEGANLASIHSLEESTFVK 52
>1mpu_A NKG2-D type II integral membrane protein; C-type lectin-like
domain, immune system; 2.50A {Homo sapiens} SCOP:
d.169.1.1 PDB: 1hyr_B
Length = 138
Score = 39.0 bits (91), Expect = 3e-04
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
Y CY F++ N +S A C S+ SL+ + Q +
Sbjct: 28 YKNNCYQFFDES-KNWYESQASCMSQNASLLKVYSKEDQDLLK 69
>1hup_A Mannose-binding protein; alpha-helical coiled-coil, C-type lectin;
2.50A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Length = 141
Score = 38.9 bits (91), Expect = 4e-04
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 3/66 (4%)
Query: 218 LQALPIERCPQFRDQPPGSTAT-YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPA 276
+AL + + S K ++ M A C S+ N A
Sbjct: 5 RKALQ-TEMARIKKWLTFSLGKQVGNKFFLTNGEI-MTFEKVKALCVKFQASVATPRNAA 62
Query: 277 LQGFIS 282
G I
Sbjct: 63 ENGAIQ 68
>2h2t_B Low affinity immunoglobulin epsilon FC receptor ( IGE receptor)
(FC-epsilon-RII)...; C-type lectin, calcium-bound,
lectin domain; 1.30A {Homo sapiens} PDB: 2h2r_A 1t8c_A
1t8d_A
Length = 175
Score = 39.4 bits (92), Expect = 4e-04
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
P + KCY ++ + + C G LV +P Q F++
Sbjct: 18 PEKWIN-FQRKCY-YFGKGTKQWVHARYACDDMEGQLVSIHSPEEQDFLT 65
>3vpp_A C-type lectin domain family 9 member A; dendritic cell, C-type
lectin-like domain, membrane, immune; 1.64A {Homo
sapiens}
Length = 132
Score = 38.5 bits (90), Expect = 4e-04
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFISWELSGLPDS 291
CY S C G +L+ + FI+ L + S
Sbjct: 11 NRESCYYVSEIW-SIWHTSQENCLKEGSTLLQIESKEEMDFITGSLRKIKGS 61
>2c6u_A CLEC1B protein; lectin, rhodocytin, aggretin, C-type lectin-like,
platelets, thrombosis; 1.6A {Homo sapiens}
Length = 122
Score = 38.5 bits (90), Expect = 4e-04
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
Y CY F+ + +S +C +L+ N + +I
Sbjct: 10 YGDSCYGFFRHN-LTWEESKQYCTDMNATLLKIDNRNIVEYIK 51
>2bpd_A Dectin-1; receptor, beta-glucan, fungal recognition, C-type
lectin-like domain, CTLD, carbohydrate; 1.5A {Mus
musculus} PDB: 2bph_A 2bpe_A 2cl8_A*
Length = 142
Score = 38.6 bits (90), Expect = 5e-04
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281
+ CY ++ + S C G L+ N FI
Sbjct: 24 HGKSCY-LFSFSGNSWYGSKRHCSQLGAHLLKIDNSKEFEFI 64
>1c3a_A Flavocetin-A: alpha subunit; C-type lectin-like domains, membrane
protein; 2.50A {Trimeresurus flavoviridis} SCOP:
d.169.1.1 PDB: 1v4l_A
Length = 135
Score = 38.6 bits (90), Expect = 5e-04
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFISWELSGLPD 290
PG +A Y+ CY +P N D+ +FC LV + F++ ++
Sbjct: 5 IPGWSA-YDRYCY-QAFSKPKNWEDAESFCEEGVKTSHLVSIESSGEGDFVAQLVAEKIK 62
Query: 291 S 291
+
Sbjct: 63 T 63
>3bdw_B NKG2-A/NKG2-B type II integral membrane protein; NK cells,
receptor, glycoprotein, lectin, signal-A transmembrane,
immune system receptor; 2.50A {Homo sapiens} PDB: 3cdg_K
3cii_H
Length = 120
Score = 38.2 bits (89), Expect = 6e-04
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
Y+ CY R +SL C S+ SL+ N F+S
Sbjct: 14 YSNSCYYIGKER-RTWEESLLACTSKNSSLLSIDNEEEMKFLS 55
>3ff7_C Killer cell lectin-like receptor subfamily G member 1;
KLRG1-cadherin complex, calcium, cell adhesion, cell
junction, cell membrane; 1.80A {Homo sapiens}
Length = 112
Score = 37.7 bits (88), Expect = 7e-04
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
Y CY F + SL FC +R L+ ++ +
Sbjct: 8 YGNHCYYFSVEE-KDWNSSLEFCLARDSHLLVITDNQEMSLLQ 49
>1qdd_A Lithostathine; pancreatic stone inhibitor, metal binding protein;
HET: SIA NDG GAL; 1.30A {Homo sapiens} SCOP: d.169.1.1
PDB: 1lit_A
Length = 144
Score = 38.2 bits (89), Expect = 7e-04
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR-GGSLVDESNPALQGFIS 282
P G+ A Y CY ++N D+ +C++ G+LV A F++
Sbjct: 15 PEGTNA-YRSYCY-YFNEDRETWVDADLYCQNMNSGNLVSVLTQAEGAFVA 63
>3g8l_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.50A {Mus musculus}
Length = 190
Score = 38.7 bits (90), Expect = 8e-04
Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 8/104 (7%)
Query: 179 ENEQLTVNSVFGSAKATQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGSTA 238
++L ++ +++ Q ++ + +
Sbjct: 20 LKDELLSSTSIECRPGNDLLESLHKEQNRWYSETKTFSDSSQHTGRGFEK-------YWF 72
Query: 239 TYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
Y KCY F R C+ SL+ N F+
Sbjct: 73 CYGIKCYYFVMDR-KTWSGCKQTCQISSLSLLKIDNEDELKFLK 115
>3g8k_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.00A {Mus musculus} PDB:
1qo3_C 3cad_A
Length = 130
Score = 37.8 bits (88), Expect = 8e-04
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
Y KCY ++ C+ SL+ N F+
Sbjct: 14 YGIKCY-YFVMDRKTWSGCKQTCQISSLSLLKIDNEDELKFLK 55
>1uv0_A Pancreatitis-associated protein 1; lectin, C-type, secreted,
inflammatory response, acute phase; 1.78A {Homo sapiens}
SCOP: d.169.1.1 PDB: 2go0_A
Length = 149
Score = 38.2 bits (89), Expect = 9e-04
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR-GGSLVDESNPALQGFIS 282
P GS A Y CY P + D+ C+ R G+LV + A F+S
Sbjct: 15 PKGSKA-YGSHCY-ALFLSPKSWTDADLACQKRPSGNLVSVLSGAEGSFVS 63
>2yhf_A C-type lectin domain family 5 member A; immune system; 1.90A {Homo
sapiens}
Length = 118
Score = 37.4 bits (87), Expect = 0.001
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
Y +C+ + +S FC+ +G +L + P F+
Sbjct: 9 YQARCFFLSTSE-SSWNESRDFCKGKGSTLAIVNTPEKLKFLQ 50
>1ypq_A Oxidised low density lipoprotein (lectin-like) receptor 1; oxidized
low density lipoprotein receptor, LOX-1, CTLD, C- type
lectin like domain; 1.40A {Homo sapiens} SCOP: d.169.1.1
PDB: 1ypu_A 1yxk_A 3vlg_A 1ypo_A 1yxj_A
Length = 135
Score = 37.4 bits (87), Expect = 0.001
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281
+ CY+F + N S C S L+ ++ A FI
Sbjct: 16 HGENCYLFSSGS-FNWEKSQEKCLSLDAKLLKINSTADLDFI 56
>3m9z_A Killer cell lectin-like receptor subfamily B MEMB; C-type
lectin-like domain, domain swapping, disulfide bond,
transmembrane protein; 1.70A {Mus musculus} PDB: 3t3a_A
Length = 139
Score = 37.4 bits (87), Expect = 0.001
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281
+ KC+ + L C +G +L+ + F+
Sbjct: 13 HRDKCFHVSQVS-NTWEEGLVDCDGKGATLMLIQDQEELRFL 53
>3rs1_A C-type lectin domain family 2 member I; C-type lectin-like, ligand
of NK receptor, natural killer CE receptors, surface of
activated T lymphocytes; 1.94A {Mus musculus}
Length = 122
Score = 37.0 bits (86), Expect = 0.001
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281
KC+ F N + AFC ++ L N F+
Sbjct: 15 VGNKCFYFSGYP-RNWTFAQAFCMAQEAQLARFDNEEELIFL 55
>1umr_A Convulxin alpha, CVX alpha; lectin, C-type lectin, platelet,
sugar-binding protein, activator, snake venom; 2.40A
{Crotalus durissus terrificus} SCOP: d.169.1.1 PDB:
1uos_A
Length = 135
Score = 37.1 bits (86), Expect = 0.002
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFISWELSGLPD 290
P Y+ CY MN D+ FC + G LV + F++W ++ +
Sbjct: 5 PSDWYY-YDQHCY-RIFNEEMNWEDAEWFCTKQAKGAHLVSIKSAKEADFVAWMVTQNIE 62
Query: 291 S 291
Sbjct: 63 E 63
>3hup_A Early activation antigen CD69; C-type lectin-like domain, disulfide
bond, glycoprotein, LEC membrane, phosphoprotein,
signal-anchor, transmembrane; 1.37A {Homo sapiens} PDB:
1e87_A 1e8i_A 3cck_A
Length = 130
Score = 37.0 bits (86), Expect = 0.002
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
Y KCY + + + C G +L + F+
Sbjct: 23 YQRKCYFISTVK-RSWTSAQNACSEHGATLAVIDSEKDMNFLK 64
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 37.0 bits (86), Expect = 0.002
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 244 CYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281
Y M ++ A+C+ R LV N ++
Sbjct: 2 SYNTSTEA-MTYDEASAYCQQRYTHLVAIQNKEEIEYL 38
>2msb_A Mannose-binding protein-A; lectin; HET: BMA MAN; 1.70A {Rattus
rattus} SCOP: d.169.1.1 PDB: 1msb_A 1ytt_A*
Length = 115
Score = 36.5 bits (85), Expect = 0.002
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 241 NGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
+GK + N M A C G++ N I
Sbjct: 1 SGKKFFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQ 42
>2kv3_A Regenerating islet-derived protein 4; GISP, C-type lectin, REG IV,
disulfide bond, glycoPro lectin, secreted, sugar binding
protein; NMR {Homo sapiens}
Length = 131
Score = 36.6 bits (85), Expect = 0.002
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFISWELSGLPD 290
PG + CY Y R+ N D+ C+S G L + I+ +SG
Sbjct: 4 APGWFY-HKSNCY-GYFRKLRNWSDAELECQSYGNGAHLASILSLKEASTIAEYISGYQR 61
Query: 291 S 291
S
Sbjct: 62 S 62
>1fm5_A Early activation antigen CD69; C-type lectin-like domain, natural
killer cell receptor, lectin, C-type lectin, immune
system; 2.27A {Homo sapiens} SCOP: d.169.1.1
Length = 199
Score = 37.6 bits (87), Expect = 0.002
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
Y KCY + + + C G +L + F+
Sbjct: 92 YQRKCYFISTVK-RSWTSAQNACSEHGATLAVIDSEKDMNFLK 133
>1sb2_A Rhodocetin alpha subunit; C-type lectin, domain swapping, toxin;
1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB:
3gpr_A
Length = 133
Score = 36.3 bits (84), Expect = 0.002
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFISWELSGLPD 290
P G ++ CY + ++ FC + LV N F+ + +
Sbjct: 3 PDGWSS-TKSYCY-RPFKEKKTWEEAERFCTEQEKEAHLVSMENRLEAVFVDMVMENNFE 60
Query: 291 S 291
+
Sbjct: 61 N 61
>3bx4_A Aggretin alpha chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB:
2vrp_A
Length = 136
Score = 36.3 bits (84), Expect = 0.003
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFISWELSG 287
G + Y+ CY +N ++ FCR++ G L + F+SW +S
Sbjct: 6 DFGWSP-YDQHCYQAFN-EQKTWDEAEKFCRAQENGAHLASIESNGEADFVSWLISQ 60
>1rdl_1 SUB-MBP-C, mannose-binding protein-C; C-type lectin,
calcium-binding protein; HET: MMA; 1.70A {Rattus rattus}
SCOP: d.169.1.1 PDB: 1rdj_1* 1rdk_1* 1rdi_1* 1rdm_1*
1rdn_1* 1rdo_1 1bv4_A 1kza_1* 1kzb_1* 1kzc_1* 1kzd_1*
1kze_1*
Length = 113
Score = 36.1 bits (84), Expect = 0.003
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 243 KCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
K ++ RR M L + A C G++ N I
Sbjct: 2 KYFMSSVRR-MPLNRAKALCSELQGTVATPRNAEENRAIQ 40
>3ff9_A Killer cell lectin-like receptor subfamily G member 1; natural
killer cell receptor KLTG1, glycoprotein, membrane,
phosphoprotein, signal-anchor; 1.80A {Mus musculus} PDB:
3ff8_C
Length = 115
Score = 35.8 bits (83), Expect = 0.003
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 240 YNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
CY F + + SL FC +G L+ +
Sbjct: 9 NGSHCYYFSMEK-KDWNSSLKFCADKGSHLLTFPDNQGVKLFG 50
>2e3x_B Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 134
Score = 36.3 bits (84), Expect = 0.003
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFIS 282
PP S+ Y CY + + FC G LV + F++
Sbjct: 4 PPDSSL-YRYFCYRVFK-EHKTWEAAERFCMEHPNNGHLVSIESMEEAEFVA 53
>3gpr_C Rhodocetin subunit gamma; disulfide bond, lectin, secreted, toxin,
cell adhesion; 3.20A {Calloselasma rhodostoma}
Length = 134
Score = 36.3 bits (84), Expect = 0.003
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCR--SRGGSLVDESNPALQGFIS 282
PG +A Y+ CY P ++ FC ++ G LV + F++
Sbjct: 4 LPGWSA-YDQHCY-QAFNEPKTWDEAERFCTEQAKRGHLVSIGSDGEADFVA 53
>1sb2_B Rhodocetin beta subunit; C-type lectin, domain swapping, toxin;
1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB:
3gpr_B
Length = 129
Score = 36.3 bits (84), Expect = 0.003
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFIS 282
P +A CY + ++ FC + G LV + A F+
Sbjct: 5 PTTWSA-SKLYCYKPFK-EKKTWIEAERFCAKQAENGHLVSIGSAAEADFLD 54
>3ubu_A Agglucetin subunit alpha-1; platelet inhibiting, agkisacucetin,
dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding;
1.91A {Deinagkistrodon acutus}
Length = 131
Score = 36.3 bits (84), Expect = 0.003
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFIS 282
PG +A Y+ CY + D+ FC R GG LV + + F++
Sbjct: 5 LPGWSA-YDQSCY-RVFKLLKTWDDAEKFCTERPKGGHLVSIESAGERDFVA 54
>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system;
2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D
1ja3_A 1p1z_D
Length = 203
Score = 36.8 bits (85), Expect = 0.003
Identities = 8/88 (9%), Positives = 24/88 (27%), Gaps = 1/88 (1%)
Query: 195 TQESDNVLIIQQKFNQNLELKKFLQALPIERCPQFRDQPPGSTATYNGKCYIFYNRRPMN 254
+ + + + + + + + Y+ KCY ++
Sbjct: 42 SIDCRPSNETLEYIKGEQHDRWDSKTKTVLDSSRDTGRGVKYWFCYSTKCY-YFIMNKTT 100
Query: 255 LRDSLAFCRSRGGSLVDESNPALQGFIS 282
A C+ G ++ + F+
Sbjct: 101 WSGCKANCQHYGVPILKIEDEDELKFLQ 128
>1c3a_B Flavocetin-A: beta subunit; C-type lectin-like domains, membrane
protein; 2.50A {Trimeresurus flavoviridis} SCOP:
d.169.1.1 PDB: 1v4l_B
Length = 125
Score = 35.8 bits (83), Expect = 0.004
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFISWELSGLPD 290
P G ++ Y+ CY ++ MN D+ FC + G LV + F++ + +
Sbjct: 5 PLGWSS-YDEHCY-QVFQQKMNWEDAEKFCTQQHKGSHLVSFHSSEEVDFVTSKTFPILK 62
Query: 291 S 291
Sbjct: 63 Y 63
>1umr_C Convulxin beta, CVX beta; lectin, C-type lectin, platelet,
sugar-binding protein, activator, snake venom; 2.40A
{Crotalus durissus terrificus} SCOP: d.169.1.1 PDB:
1uos_B
Length = 125
Score = 35.8 bits (83), Expect = 0.004
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFIS 282
P ++ Y+ CY ++ M D+ FC + G LV + F+
Sbjct: 5 PSHWSS-YDRYCY-KVFKQEMTWADAEKFCTQQHTGSHLVSFHSTEEVDFVV 54
>1jwi_B Platelet aggregation inducer; domain swapping, C-type lectin,
toxin; 2.00A {Bitis arietans} SCOP: d.169.1.1 PDB:
1uex_B
Length = 125
Score = 35.9 bits (83), Expect = 0.004
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFIS 282
P ++ Y G CY + D+ FC+ GG L+ ++ FIS
Sbjct: 5 LPDWSS-YKGHCY-KVFKVEKTWADAEKFCKELVNGGHLMSVNSREEGEFIS 54
>1j34_A Coagulation factor IX-binding protein A chain; magnesium ION,
calcium ION, GLA domain, protein binding/blood clotting
complex; HET: CGU; 1.55A {Trimeresurus flavoviridis}
SCOP: d.169.1.1 PDB: 1bj3_A* 1j35_A* 1x2t_A* 1x2w_A
1ixx_A 1y17_A 1wt9_A 1iod_A*
Length = 129
Score = 35.9 bits (83), Expect = 0.004
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCR--SRGGSLVDESNPALQGFIS 282
P G ++ Y G CY + D+ FC ++GG LV + F++
Sbjct: 3 PSGWSS-YEGHCY-KPFKLYKTWDDAERFCTEQAKGGHLVSIESAGEADFVA 52
>1fvu_A Botrocetin alpha chain; VON WILLBRAND factor modulator, C-type
lectin, metal- binding, loop exchanged dimer, toxin;
1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_B
1u0n_B 1u0o_A
Length = 133
Score = 35.9 bits (83), Expect = 0.004
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVD-ESNPALQGFIS 282
P G ++ Y G CY + ++ MN D+ FC + GG LV + + F+
Sbjct: 3 PSGWSS-YEGNCY-KFFQQKMNWADAERFCSEQAKGGHLVSIKIYSKEKDFVG 53
>1fvu_B Botrocetin beta chain; VON WILLBRAND factor modulator, C-type
lectin, metal- binding, loop exchanged dimer, toxin;
1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_C
1u0n_C 1u0o_B
Length = 125
Score = 35.5 bits (82), Expect = 0.004
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFIS 282
PP ++ Y G CY + + M+ D+ FC + G LV + F+
Sbjct: 3 PPDWSS-YEGHCY-RFFKEWMHWDDAEEFCTEQQTGAHLVSFQSKEEADFVR 52
>1oz7_B Echicetin B-chain; platelet aggregation, dimer, toxin; 2.40A {Echis
carinatus} SCOP: d.169.1.1
Length = 123
Score = 35.4 bits (82), Expect = 0.005
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCR--SRGGSLVDESNPALQGFISWELSGLPD 290
P + Y G CY + MN D+ FC + G LV N F+ +
Sbjct: 3 LPDWSV-YEGYCY-KVFKERMNWADAEKFCTKQHKDGHLVSFRNSKEVDFVISLAFPMLK 60
Query: 291 S 291
+
Sbjct: 61 N 61
>1gz2_A Ovocleidin-17, OC-17 ovocleidin; structural protein, CTLD, eggshell
structural protein, phosphoprotein, sugar-binding
protein, glycoprotein; HET: SEP; 1.5A {Gallus gallus}
SCOP: d.169.1.1
Length = 142
Score = 35.9 bits (83), Expect = 0.005
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCR--SRGGSLVDESNPALQGFIS 282
PG G C + R ++ + +FCR G L + A ++
Sbjct: 6 GPGWVP-TPGGCL-GFFSRELSWSRAESFCRRWGPGSHLAAVRSAAELRLLA 55
>1j34_B Coagulation factor IX-binding protein B chain; magnesium ION,
calcium ION, GLA domain, protein binding/blood clotting
complex; HET: CGU; 1.55A {Trimeresurus flavoviridis}
SCOP: d.169.1.1 PDB: 1bj3_B 1ixx_B* 1j35_B* 1x2t_B*
1x2w_B 1wt9_B 1iod_B 1y17_B
Length = 123
Score = 35.4 bits (82), Expect = 0.005
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFIS 282
P ++ Y G CY P N D+ FC + GG LV + F+
Sbjct: 3 PSDWSS-YEGHCY-KPFSEPKNWADAENFCTQQHAGGHLVSFQSSEEADFVV 52
>3gpr_D Rhodocetin subunit delta; disulfide bond, lectin, secreted, toxin,
cell adhesion; 3.20A {Calloselasma rhodostoma}
Length = 124
Score = 35.1 bits (81), Expect = 0.005
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFIS 282
P ++ YNG CY D+ +FC ++ G L + + F+
Sbjct: 2 PLHWSS-YNGYCY-RVFSELKTWEDAESFCYAQHKGSRLASIHSREEEAFVG 51
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB:
2vrp_B
Length = 146
Score = 35.5 bits (82), Expect = 0.006
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCR--SRGGSLVDESNPALQGFIS 282
P G ++ Y G CY +N P N D+ FC+ + LV + F+
Sbjct: 26 PSGWSS-YEGHCYKPFN-EPKNWADAERFCKLQPKHSHLVSFQSAEEADFVV 75
>1jzn_A Galactose-specific lectin; C-type lectin, protein-disaccharide
complex, sugar binding P; HET: BGC GAL; 2.20A {Crotalus
atrox} SCOP: d.169.1.1 PDB: 1muq_A*
Length = 135
Score = 35.5 bits (82), Expect = 0.006
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRS--RGGSLVDESNPALQGFIS 282
P NG CY + D+ FCR G L I+
Sbjct: 4 PLDWLP-MNGLCY-KIFNQLKTWEDAEMFCRKYKPGCHLASFHRYGESLEIA 53
>1ukm_A EMS16 A chain, EMS16 subunit A; domain swapping, C-type lectin,
toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP:
d.169.1.1 PDB: 1v7p_A*
Length = 134
Score = 35.1 bits (81), Expect = 0.007
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCR--SRGGSLVDESNPALQGFISWELSGLPD 290
P TA Y+ CY P N ++ FC ++ G LV + F++ +SG
Sbjct: 5 PSDWTA-YDQHCY-LAIGEPQNWYEAERFCTEQAKDGHLVSIQSREEGNFVAQLVSGFMH 62
Query: 291 S 291
Sbjct: 63 R 63
>1egg_A Macrophage mannose receptor; C-type lectin, sugar binding protein;
2.30A {Homo sapiens} SCOP: d.169.1.1 PDB: 1egi_A
Length = 147
Score = 35.5 bits (82), Expect = 0.007
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 233 PPGSTAT-YNGKCYIFY---NRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281
P A+ C+ Y +S FCR+ GG L +N Q I
Sbjct: 6 PEDWGASSRTSLCFKLYAKGKHEKKTWFESRDFCRALGGDLASINNKEEQQTI 58
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 35.6 bits (82), Expect = 0.007
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 244 CYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFI 281
Y Y+ +PMN + + FCR LV N A ++
Sbjct: 2 TY-HYSEKPMNWQRARRFCRDNYTDLVAIQNKAEIEYL 38
>1ukm_B EMS16 B chain, EMS16 subunit B; domain swapping, C-type lectin,
toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP:
d.169.1.1 PDB: 1v7p_B*
Length = 128
Score = 34.7 bits (80), Expect = 0.008
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFIS 282
P G ++ ++ CY N ++ C + G L + + F+S
Sbjct: 2 PLGWSS-FDQHCY-KVFEPVKNWTEAEEICMQQHKGSRLASIHSSEEEAFVS 51
>1oz7_A Echicetin A-chain; platelet aggregation, dimer, toxin; 2.40A {Echis
carinatus} SCOP: d.169.1.1
Length = 131
Score = 34.8 bits (80), Expect = 0.009
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGS--LVDESNPALQGFIS 282
PPG ++ CY + P ++ FC +G L+ + + +
Sbjct: 3 PPGWSS-NGVYCY-MLFKEPKTWDEAEKFCNKQGKDGHLLSIESKKEEILVD 52
>2e3x_C Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 122
Score = 34.3 bits (79), Expect = 0.011
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSR--GGSLVDESNPALQGFIS 282
P G + Y CY +N N D+ FC + G LV + + F+
Sbjct: 4 PSGWLS-YEQHCYKGFN-DLKNWTDAEKFCTEQKKGSHLVSLHSREEEKFVV 53
>3ubu_B Agglucetin subunit beta-2; platelet inhibiting, agkisacucetin,
dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding;
1.91A {Deinagkistrodon acutus}
Length = 126
Score = 34.3 bits (79), Expect = 0.011
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCR--SRGGSLVDESNPALQGFIS 282
P +A Y G CY + D+ FC +GG LV + F+
Sbjct: 5 PLRWSA-YEGHCY-LVVKEKKTWDDAEKFCTEQRKGGHLVSVHSREEADFLV 54
>1wmz_A Lectin CEL-I, N-acetyl-D-galactosamine-specific C-type; C-type
lectin, N-acetylgalactosamine, invertebrate, sugar
binding protein; HET: NGA A2G; 1.70A {Cucumaria
echinata} SCOP: d.169.1.1 PDB: 1wmy_A*
Length = 140
Score = 34.7 bits (80), Expect = 0.011
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 9/57 (15%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGS-------LVDESNPALQGFIS 282
P A CY F+N ++ C S S LV + A Q ++
Sbjct: 4 PTDWEA-EGDHCYRFFNTL-TTWENAHHECVSYSCSTLNVRSDLVSVHSAAEQAYVF 58
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 34.4 bits (79), Expect = 0.016
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 244 CYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPALQGFIS 282
Y Y+ + + S +C++R LV N +++
Sbjct: 2 TY-HYSTKAYSWNISRKYCQNRYTDLVAIQNKNEIDYLN 39
>1byf_A TC14, protein (polyandrocarpa lectin); C-type lectin,
galactose-specific, sugar binding protein; 2.00A
{Polyandrocarpa misakiensis} SCOP: d.169.1.1 PDB:
1tlg_A*
Length = 125
Score = 33.1 bits (76), Expect = 0.028
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 243 KCYIFYNRRPMNLRDSLAFCRSRGGSLV 270
+F + MN D+ +C+SRG +LV
Sbjct: 3 YEILFSDET-MNYADAGTYCQSRGMALV 29
>3alu_A Lectin CEL-IV, C-type; C-type lectin, raffinose, sugar binding
protein; HET: RAF; 1.65A {Cucumaria echinata} PDB:
3als_A* 3alt_A*
Length = 157
Score = 32.9 bits (75), Expect = 0.054
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 233 PPGSTATYNGKCYIFYNRRPMNLRDSLAFCRSRGGSLVDESNPA 276
PP T +NGKC+ ++ +N ++ CR G + A
Sbjct: 6 PPLWTG-FNGKCFRLFHNH-LNFDNAENACRQFGLASCSGDELA 47
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 30.8 bits (69), Expect = 0.45
Identities = 11/94 (11%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 100 MYFLTFHGPQPLKLVMEAVEH-AMYVYDTGHVIIDNVQFMLGLSDSALDRFYMQDTIIQE 158
+ G P + E + +++D ++ ++A +I
Sbjct: 106 LLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQ---VIGR 162
Query: 159 FRAFASRSHCHVTLVIHPRKENEQLTVNSVFGSA 192
A A+ + C + + H K + ++
Sbjct: 163 MEAIAADTGCSIVFLHHASKGAAMMGAGDQQQAS 196
>1h8u_A MBP, eosinophil granule major basic protein 1; lectin, eosinophil
granule protein, EMBP; 1.8A {Homo sapiens} SCOP:
d.169.1.1 PDB: 2brs_A*
Length = 117
Score = 29.3 bits (66), Expect = 0.61
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 244 CYIFYNRRPMNLRDSLAFCRSR-GGSLVDESNPALQGFISWELSGLPDS 291
Y+ R + CR G+LV N + I +S L
Sbjct: 3 RYLLV-RSLQTFSQAWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQG 50
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse,
cytoplastic, hydrolase; 2.00A {Homo sapiens}
Length = 223
Score = 28.2 bits (62), Expect = 2.6
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 213 ELKKFLQALPIERCPQFRDQPPGSTATYNGKCYIFYNRRPMNLRDSLA 260
L FL+ P+ + + P G TY KC F+ RP + S+A
Sbjct: 176 SLDNFLRKKPLTLEHRKQPCPYGRKCTYGIKCRFFHPERPSCPQRSVA 223
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 28.1 bits (63), Expect = 3.3
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 13/61 (21%)
Query: 5 SLDLALQGVTTLWGSFEVQNKRLARIMLQQLVRK-------PLL------DNLDKFDEYS 51
+L A + G ++ I L+Q + + NLD +S
Sbjct: 62 TLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHS 121
Query: 52 D 52
D
Sbjct: 122 D 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.421
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,447,787
Number of extensions: 254168
Number of successful extensions: 646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 88
Length of query: 291
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 198
Effective length of database: 4,105,140
Effective search space: 812817720
Effective search space used: 812817720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.8 bits)