BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4521
         (223 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q96RR1|PEO1_HUMAN Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1
          Length = 684

 Score =  108 bits (270), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 5/151 (3%)

Query: 31  ESTVPTKQCQGVLHCPPYKKKTDS-AVLVQRLVDFLTLCNAHLNYNVICLPHGLTCLPQE 89
           E+T+P       L   P   + D+  VL  R +D L L N       + LP G TCLP  
Sbjct: 235 ETTIPRPSAYHNLFGLPLISRRDAEVVLTSRELDSLAL-NQSTGLPTLTLPRGTTCLPPA 293

Query: 90  ILPCLEEYNKLYLWFGKD---HESTRVFSSKLNEKRCFLIRETENQPLPTESKAKGLDLN 146
           +LP LE++ ++  W G D    E+ ++F+ KLN KRCFL+R  + QP P E+   G +L+
Sbjct: 294 LLPYLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCFLVRPGDQQPRPLEALNGGFNLS 353

Query: 147 RIIESASPLCHPAIITYDVLQEDVLADLQNV 177
           RI+ +A P  H +I+++  L+E+VL +L NV
Sbjct: 354 RILRTALPAWHKSIVSFRQLREEVLGELSNV 384


>sp|Q8CIW5|PEO1_MOUSE Twinkle protein, mitochondrial OS=Mus musculus GN=Peo1 PE=2 SV=1
          Length = 685

 Score =  102 bits (253), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 11/155 (7%)

Query: 30  IESTVPTKQCQGVLH----CPPYKKKTDSAVLVQRLVDFLTLCNAHLNYNVICLPHGLTC 85
           +E+T+P     GV H     P   ++    V+  R +D L L  +      + LP G  C
Sbjct: 235 VETTIPRP---GVYHNLFGLPLISRRDTEVVVTSRELDSLALSQS-TGLPTLSLPRGTVC 290

Query: 86  LPQEILPCLEEYNKLYLWFGKD---HESTRVFSSKLNEKRCFLIRETENQPLPTESKAKG 142
           LP  +LP LE++ ++  W G D    E+ ++F+ KLN KRC L+R    QP P E+  +G
Sbjct: 291 LPPALLPYLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVRPGNQQPRPLEALNQG 350

Query: 143 LDLNRIIESASPLCHPAIITYDVLQEDVLADLQNV 177
           L L RI+ +A P  H +I+++  L+E+VL +L NV
Sbjct: 351 LSLPRILRTALPAWHKSIVSFRQLREEVLGELSNV 385


>sp|Q5ZIW1|PEO1_CHICK Twinkle protein, mitochondrial OS=Gallus gallus GN=PEO1 PE=2 SV=1
          Length = 669

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 9/152 (5%)

Query: 31  ESTVPTKQC-QGVLHCPPYKKKTDSAVLVQRLVDFLTLCNAHLNYNVICL--PHGLTCLP 87
           E T+P     + +   P   ++    VL    +D L L   H    V CL  P G T LP
Sbjct: 241 EETLPRFDAYRNLFGLPLIGRRDAEVVLTGSELDALAL---HQATGVPCLALPRGATILP 297

Query: 88  QEILPCLEEYNKLYLWFGKD---HESTRVFSSKLNEKRCFLIRETENQPLPTESKAKGLD 144
             +LP LE++ ++ LW G D    E++++F+ KLN KRC L++  + QP P E+  +GL+
Sbjct: 298 PALLPYLEQFRRVTLWLGDDLRSWEASKLFARKLNPKRCSLVQPGDLQPRPLEALNRGLN 357

Query: 145 LNRIIESASPLCHPAIITYDVLQEDVLADLQN 176
           L +I+ +A P  H AI+++  L+E+V  +L N
Sbjct: 358 LTKILRAALPAGHKAIVSFRQLREEVFGELAN 389


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,527,726
Number of Sequences: 539616
Number of extensions: 3205723
Number of successful extensions: 6223
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6217
Number of HSP's gapped (non-prelim): 3
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)