Query psy4521
Match_columns 223
No_of_seqs 120 out of 182
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:18:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q57_A DNA primase/helicase; d 99.9 1.1E-27 3.8E-32 225.0 14.6 189 7-206 42-240 (503)
2 1nui_A DNA primase/helicase; z 99.9 1.7E-22 6E-27 175.5 11.9 140 8-150 106-255 (255)
3 2au3_A DNA primase; zinc ribbo 99.7 8E-18 2.7E-22 155.8 8.9 146 6-156 186-352 (407)
4 1dd9_A DNA primase, DNAG; topr 99.7 3.7E-17 1.3E-21 149.0 10.3 144 7-155 107-273 (338)
5 4edg_A DNA primase; catalytic 99.7 8.8E-17 3E-21 146.2 6.8 145 6-155 95-260 (329)
6 1t6t_1 Putative protein; struc 97.6 5.3E-05 1.8E-09 59.5 4.1 71 53-127 21-95 (118)
7 2fcj_A Small toprim domain pro 97.5 0.00064 2.2E-08 53.4 9.1 99 52-157 4-109 (119)
8 3bh0_A DNAB-like replicative h 61.4 3.3 0.00011 35.9 1.9 43 157-207 24-67 (315)
9 2kpo_A Rossmann 2X2 fold prote 51.9 3.7 0.00012 30.4 0.4 39 90-128 38-85 (110)
10 1ywy_A Hypothetical protein PA 47.7 5.3 0.00018 28.5 0.7 21 51-71 44-64 (74)
11 1vdd_A Recombination protein R 46.5 1.2E+02 0.0042 25.8 9.2 79 51-129 78-169 (228)
12 3sxu_A DNA polymerase III subu 43.7 20 0.00068 28.3 3.6 24 86-109 102-125 (150)
13 2ekm_A Hypothetical protein ST 36.3 24 0.00081 28.7 2.9 34 98-131 55-91 (162)
14 1wvq_A Hypothetical protein PA 36.0 24 0.00082 28.8 2.9 34 98-131 58-94 (167)
15 1svq_A Severin; actin-binding; 34.8 59 0.002 24.0 4.9 57 75-131 25-89 (114)
16 2d16_A Hypothetical protein PH 34.7 24 0.00081 28.7 2.7 35 98-132 54-91 (162)
17 1vgg_A Conserved hypothetical 34.5 33 0.0011 27.8 3.5 34 98-131 53-89 (161)
18 1kcq_A Gelsolin, brevin, ADF, 34.3 41 0.0014 24.4 3.8 44 76-119 16-64 (104)
19 2q6t_A DNAB replication FORK h 33.1 51 0.0017 29.7 5.1 43 157-207 153-199 (444)
20 1rlh_A Conserved hypothetical 32.4 24 0.00082 28.9 2.4 34 98-131 66-102 (173)
21 2gai_A DNA topoisomerase I; zi 31.1 21 0.00071 34.6 2.1 64 93-167 73-140 (633)
22 3bgw_A DNAB-like replicative h 30.2 32 0.0011 31.4 3.2 42 158-207 154-196 (444)
23 3ab8_A Putative uncharacterize 28.8 1.8E+02 0.0062 23.2 7.3 44 73-128 141-190 (268)
24 1mw9_X DNA topoisomerase I; de 24.2 71 0.0024 30.5 4.5 53 93-154 99-156 (592)
25 3vdp_A Recombination protein R 22.1 2.5E+02 0.0084 23.6 7.0 75 53-129 94-185 (212)
26 1i7d_A DNA topoisomerase III; 20.7 38 0.0013 33.0 1.8 55 93-156 91-153 (659)
27 2bma_A Glutamate dehydrogenase 20.6 21 0.00072 33.6 0.0 60 11-84 85-147 (470)
28 3kk4_A Uncharacterized protein 20.5 22 0.00074 27.8 0.0 21 201-221 24-44 (125)
29 4a1f_A DNAB helicase, replicat 20.4 63 0.0022 28.6 3.1 38 162-207 3-45 (338)
No 1
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.95 E-value=1.1e-27 Score=224.97 Aligned_cols=189 Identities=13% Similarity=0.154 Sum_probs=158.1
Q ss_pred ceEEEeeecCCCcEEEEEEeecccc-ccccCCCCccccccCCCCCCCCeEEEeCChhHHHHHhhhhc-CceEEEcCCCCC
Q psy4521 7 KTLYMPLVNYANEVVGYKQVHKSIE-STVPTKQCQGVLHCPPYKKKTDSAVLVQRLVDFLTLCNAHL-NYNVICLPHGLT 84 (223)
Q Consensus 7 ~~lvfP~~~~~g~lvg~K~r~~~ke-k~~p~~~~~glFG~~~~~~~~~~iVItEGE~Dalav~q~~~-g~p~VSlP~Ga~ 84 (223)
.+++|||+|.+|+++|++.|...+. |-.-......+||++... ..+++|||||++|+||++|+.+ .++++|||.|..
T Consensus 42 ~~i~fp~~d~~G~~~g~~~R~~~~~~ky~~~~k~~~lyg~~~~~-~~~~v~i~EG~~D~ls~~~~~g~~~~v~slg~~~~ 120 (503)
T 1q57_A 42 MYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDALFGKHLWN-GGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGAS 120 (503)
T ss_dssp CEEEEEEECTTSCEEEEEEEETTTEEEEEECCCTTCEETGGGCS-SEEEEEEESSHHHHHHHTTTTTTCSCEEEESSTTT
T ss_pred EEEEEEEECCCCCEEEEEeECCCCCceEecCCCCCceECccccC-CCCEEEEECCHHHHHHHHHhcCCCcEEEECCcccc
Confidence 4799999999999999999975221 211122335899999874 4679999999999999999842 378999999987
Q ss_pred CCCc---ccccccccCceEEEEcCCChH---HHHHHHhhcCCCceEEEecCCCCCChhHHHhC-C-chHHHHHHhcCCCC
Q psy4521 85 CLPQ---EILPCLEEYNKLYLWFGKDHE---STRVFSSKLNEKRCFLIRETENQPLPTESKAK-G-LDLNRIIESASPLC 156 (223)
Q Consensus 85 slp~---~~lp~Le~F~~IiLw~D~D~~---~a~e~A~kLg~~RC~iV~~~~~~kdane~L~~-g-~~l~~~i~~A~~~~ 156 (223)
...+ ..+++|++|++|+||+|+|.+ ++++++++|...+|+++.+| .|||||+|++ | ..+.++|++|.++.
T Consensus 121 ~~~~~l~~~l~~l~~~~~ivl~~D~D~aG~~aa~~~~~~l~~~~~~~~~~p--~kD~nd~l~~~g~~~~~~~i~~a~~~~ 198 (503)
T 1q57_A 121 AAKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP--CKDANECHLNGHDREIMEQVWNAGPWI 198 (503)
T ss_dssp THHHHHHTTHHHHHTEEEEEEECCSSHHHHHHHHHHHHHSCGGGEEECCCS--SSSHHHHHTTSCHHHHHHHHTTCCCCC
T ss_pred hhHHHHHHHHHhhcCCCEEEEEeCCCHHHHHHHHHHHHhcccCcEEEEeCC--CCCHHHHHHhcCHHHHHHHHHhcCCCC
Confidence 5432 357889999999999999999 99999999998899999986 8999999976 5 46999999999999
Q ss_pred CCcccchhHHHHHHHHhhhhhHHHHHhhcccCCccccCChhhHhhhcccc
Q psy4521 157 HPAIITYDVLQEDVLADLQNVTLLLLRTMYCRRMCWLTYKTTNRFKVSNG 206 (223)
Q Consensus 157 ~~~I~tf~dlre~V~~el~n~~~~~~~~~~~~Gv~w~~fp~Ln~~lkG~~ 206 (223)
+++++++.|+.+++.+.+ +..... |+++..|+.|+++|+|+.
T Consensus 199 ~~~i~~~~~~~~~i~~~~-~~~~~~-------~i~t~G~~~LD~~lgGl~ 240 (503)
T 1q57_A 199 PDGVVSALSLRERIREHL-SSEESV-------GLLFSGCTGINDKTLGAR 240 (503)
T ss_dssp CSSEEEGGGGHHHHHHHH-HHSCTT-------CSCCSSCTTHHHHHCCCC
T ss_pred HHHhcChHHHHHHHHhhh-cccccC-------CccccchhhhhHhhcccC
Confidence 999999999999988876 445666 999867999999998864
No 2
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=99.88 E-value=1.7e-22 Score=175.48 Aligned_cols=140 Identities=13% Similarity=0.170 Sum_probs=112.8
Q ss_pred eEEEeeecCCCcEEEEEEeecccc-ccccCCCCccccccCCCCCCCCeEEEeCChhHHHHHhhhh-cCceEEEcCCCCCC
Q psy4521 8 TLYMPLVNYANEVVGYKQVHKSIE-STVPTKQCQGVLHCPPYKKKTDSAVLVQRLVDFLTLCNAH-LNYNVICLPHGLTC 85 (223)
Q Consensus 8 ~lvfP~~~~~g~lvg~K~r~~~ke-k~~p~~~~~glFG~~~~~~~~~~iVItEGE~Dalav~q~~-~g~p~VSlP~Ga~s 85 (223)
+++||++|.+|+++|++.|...+. |-..+.....+||++... ++++||||||++|+||++|+. .+.+++|+++|...
T Consensus 106 ~i~fp~~d~~G~vvg~~~R~~~~~~Ky~~s~k~~~lyg~~~~~-~~~~v~i~EG~~Dals~~~~~g~~~~v~slg~~~~~ 184 (255)
T 1nui_A 106 YQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDALFGKHLWN-GGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASA 184 (255)
T ss_dssp EEEEEEECTTSCEEEEEEECTTCCCEEEECCCTTCCTTGGGCC-CBSCCEEESSHHHHHHHHHHHTTCSCEECCTTTTTT
T ss_pred EEEEEEECCCCCEEEEEEECCCCCceEecCCCCccccCccccC-CCCEEEEEeCHHHHHHHHHhhCCCcEEEECCCccch
Confidence 599999999999999999975211 111122234789998774 567999999999999999984 35799999988875
Q ss_pred CCc---ccccccccCceEEEEcCCChH---HHHHHHhhcCCCceEEEecCCCCCChhHHHhC-C-chHHHHHH
Q psy4521 86 LPQ---EILPCLEEYNKLYLWFGKDHE---STRVFSSKLNEKRCFLIRETENQPLPTESKAK-G-LDLNRIIE 150 (223)
Q Consensus 86 lp~---~~lp~Le~F~~IiLw~D~D~~---~a~e~A~kLg~~RC~iV~~~~~~kdane~L~~-g-~~l~~~i~ 150 (223)
..+ ..+++|.+|++||||+|+|.+ ++++++++|+.++|+++.+| .||+||+|++ | .+++++||
T Consensus 185 ~~~~l~~~~~~l~~~~~iil~~D~D~aG~~aa~~~~~~l~~~~v~~~~~p--~kD~nd~l~~~g~~~~~~~i~ 255 (255)
T 1nui_A 185 AKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP--CKDANECHLNGHDREIMEQVW 255 (255)
T ss_dssp HHHHHHHTHHHHTTBSCEEEECCSSHHHHHHHHHHHHHSCTTTEEECCCS--SSSHHHHHTTTTHHHHHHHHC
T ss_pred hHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHHHhccCCCEEEEeCC--CCCHHHHHHhcCHHHHHHHhC
Confidence 322 256788899999999999999 99999999987799999886 8999999976 5 46888875
No 3
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=99.72 E-value=8e-18 Score=155.85 Aligned_cols=146 Identities=21% Similarity=0.316 Sum_probs=112.7
Q ss_pred cceEEEeeecCCCcEEEEEEe-ec--cccc--cccCC---C-CccccccCCCC---CCCCeEEEeCChhHHHHHhhhhcC
Q psy4521 6 TKTLYMPLVNYANEVVGYKQV-HK--SIES--TVPTK---Q-CQGVLHCPPYK---KKTDSAVLVQRLVDFLTLCNAHLN 73 (223)
Q Consensus 6 ~~~lvfP~~~~~g~lvg~K~r-~~--~kek--~~p~~---~-~~glFG~~~~~---~~~~~iVItEGE~Dalav~q~~~g 73 (223)
+..++||++|.+|+++|++-| .. ..-| +.|.. . ...|||++... ...+++|||||++|+||++|+ |
T Consensus 186 ~~ri~fPi~d~~G~vigf~gRr~l~~~~pKylnspet~~f~k~~~lygl~~a~~~i~~~~~viivEG~~Dvlsl~q~--G 263 (407)
T 2au3_A 186 LRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRVFKKGENLFGLYEAKEYIKEEGFAILVEGYFDLLRLFSE--G 263 (407)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECSCCSSCSEEECCCCSSCCGGGCEETHHHHHHHHHHHTCEEECSSHHHHHHHHHT--T
T ss_pred CCeEEEEEECCCCCEEEEEEEEecCCCCCeeecCCCCCCCCCCccccChHHHHHHhccCCeEEEEechHhHHHHHHC--C
Confidence 357999999999999999999 44 1122 22221 1 24678877542 235789999999999999996 4
Q ss_pred c-eEEEcCCCCCCCCcccccccccC-ceEEEEcCCChH---HHHHHHhhcCCC--ceEEEecCCCCCChhHHHhC-C-ch
Q psy4521 74 Y-NVICLPHGLTCLPQEILPCLEEY-NKLYLWFGKDHE---STRVFSSKLNEK--RCFLIRETENQPLPTESKAK-G-LD 144 (223)
Q Consensus 74 ~-p~VSlP~Ga~slp~~~lp~Le~F-~~IiLw~D~D~~---~a~e~A~kLg~~--RC~iV~~~~~~kdane~L~~-g-~~ 144 (223)
+ ++|+.. |. ++.++.+..|.++ ++|+||+|+|.+ +|..+++.|... +|+++.+|+ .+||||.|++ | .+
T Consensus 264 ~~n~VA~l-Gt-alt~~~~~~L~r~~~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~~~v~~lP~-gkDpdd~l~~~g~~~ 340 (407)
T 2au3_A 264 IRNVVAPL-GT-ALTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPVYLPE-GYDPDEFIKEFGKEE 340 (407)
T ss_dssp CCSEEEES-SS-SCCHHHHHHHHTTCSEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEECCCT-TCCHHHHHHHHCHHH
T ss_pred CCcEEEcC-cc-cCCHHHHHHHHhcCCeEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEEECCC-CCChHHHHHhcCHHH
Confidence 5 477766 54 4677778889888 899999999999 888888888654 678888875 7999999975 7 57
Q ss_pred HHHHHHhcCCCC
Q psy4521 145 LNRIIESASPLC 156 (223)
Q Consensus 145 l~~~i~~A~~~~ 156 (223)
+.++|++|.|+.
T Consensus 341 ~~~~l~~a~~~~ 352 (407)
T 2au3_A 341 LRRLINSSGELF 352 (407)
T ss_dssp HHHHHHHCCCHH
T ss_pred HHHHHHcCCCHH
Confidence 999999998753
No 4
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=99.70 E-value=3.7e-17 Score=148.97 Aligned_cols=144 Identities=13% Similarity=0.182 Sum_probs=107.2
Q ss_pred ceEEEeeecCCCcEEEEEEeecc--ccc--cccCC----CCccccccCCC---CCCCCeEEEeCChhHHHHHhhhhcCc-
Q psy4521 7 KTLYMPLVNYANEVVGYKQVHKS--IES--TVPTK----QCQGVLHCPPY---KKKTDSAVLVQRLVDFLTLCNAHLNY- 74 (223)
Q Consensus 7 ~~lvfP~~~~~g~lvg~K~r~~~--kek--~~p~~----~~~glFG~~~~---~~~~~~iVItEGE~Dalav~q~~~g~- 74 (223)
..++||++|.+|+++|+.-|... .-| +-|.. ....|||++.. ....++||||||++|+||++|+ |+
T Consensus 107 ~Ri~fPI~d~~G~vigf~gR~l~~~~pKYlnspet~if~K~~~Lygl~~A~~~i~~~~~viIvEG~~Dvlsl~q~--G~~ 184 (338)
T 1dd9_A 107 ERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQY--GIN 184 (338)
T ss_dssp SEEEEEEECTTSCEEEEEEEESSSCSCSEEECCCCSSCCTTTCCBTHHHHHHTCSSCSCEEEESSHHHHHHHHHT--TCC
T ss_pred CEEEEEEECCCCcEEEEEEEeCCCCCCceecCCCCcccccCccccCccHHHHhhccCCeEEEEechHhHHHHHHc--CCC
Confidence 46899999999999999999872 222 22221 12467777532 2346799999999999999997 55
Q ss_pred eEEEcCCCCCCCCccccccccc-CceEEEEcCCChH---HHHHHHhh---c-CCC-ceEEEecCCCCCChhHHHhC-C-c
Q psy4521 75 NVICLPHGLTCLPQEILPCLEE-YNKLYLWFGKDHE---STRVFSSK---L-NEK-RCFLIRETENQPLPTESKAK-G-L 143 (223)
Q Consensus 75 p~VSlP~Ga~slp~~~lp~Le~-F~~IiLw~D~D~~---~a~e~A~k---L-g~~-RC~iV~~~~~~kdane~L~~-g-~ 143 (223)
++|++. |+. +..+.+.+|.+ +++||||||+|.+ ++..+++. | ..+ +|+++.+|+ .|||||.+.+ | .
T Consensus 185 ~aVA~l-Gta-lt~~~~~~L~r~~~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~lP~-gkDpdd~l~~~G~~ 261 (338)
T 1dd9_A 185 YAVASL-GTS-TTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPD-GEDPDTLVRKEGKE 261 (338)
T ss_dssp CEEECC-C-C-CCHHHHHHHHHHCSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEEECT-TCCHHHHHHHHHHH
T ss_pred cEEEeC-ccc-cCHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEecCCC-CCChHHHHHHhcHH
Confidence 466654 443 56666777665 5899999999999 88888776 3 323 789998875 7999999975 5 5
Q ss_pred hHHHHHHhcCCC
Q psy4521 144 DLNRIIESASPL 155 (223)
Q Consensus 144 ~l~~~i~~A~~~ 155 (223)
++.++|++|.|+
T Consensus 262 ~~~~~l~~a~~~ 273 (338)
T 1dd9_A 262 AFEARMEQAMPL 273 (338)
T ss_dssp HHHHHHTTCEEH
T ss_pred HHHHHHHcCCCH
Confidence 799999999875
No 5
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=99.65 E-value=8.8e-17 Score=146.19 Aligned_cols=145 Identities=20% Similarity=0.297 Sum_probs=109.6
Q ss_pred cceEEEeeecCCCcEEEEEEeecc--ccc--cccCC---C-CccccccCCCC---CCCCeEEEeCChhHHHHHhhhhcCc
Q psy4521 6 TKTLYMPLVNYANEVVGYKQVHKS--IES--TVPTK---Q-CQGVLHCPPYK---KKTDSAVLVQRLVDFLTLCNAHLNY 74 (223)
Q Consensus 6 ~~~lvfP~~~~~g~lvg~K~r~~~--kek--~~p~~---~-~~glFG~~~~~---~~~~~iVItEGE~Dalav~q~~~g~ 74 (223)
+..++||++|.+|+++|+.-|.+. .-| +-|.. + ...|||++... ...+++|||||++|+||++|+ |+
T Consensus 95 r~Ri~fPI~d~~G~vigF~gR~l~~~~pKYlNspet~~f~K~~~Lygl~~a~~~i~~~~~vivvEG~~Dvial~q~--Gi 172 (329)
T 4edg_A 95 RNRIMFPLKNAQGRIVGYSGRTYTGQEPKYLNSPETPIFQKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTA--GL 172 (329)
T ss_dssp CSEEEEEEECTTSCEEEEEEECSSSCSSSEEECCCCSSCCTTTCCBTHHHHHHHHHHHTCEEEESCHHHHHHHHHH--TC
T ss_pred CCEEEEEEECCCCCEEEEEeEECCCCCCeEeCCCCcccccccchhccHHHHHHHhccCCcEEEEecHHHHHHHHHc--CC
Confidence 346899999999999999999872 122 22221 1 23578877543 235799999999999999997 45
Q ss_pred e-EEEcCCCCCCCCcccccccccC-ceEEEEcCCChH---HHHHHHhhcCC--CceEEEecCCCCCChhHHHhC-C-chH
Q psy4521 75 N-VICLPHGLTCLPQEILPCLEEY-NKLYLWFGKDHE---STRVFSSKLNE--KRCFLIRETENQPLPTESKAK-G-LDL 145 (223)
Q Consensus 75 p-~VSlP~Ga~slp~~~lp~Le~F-~~IiLw~D~D~~---~a~e~A~kLg~--~RC~iV~~~~~~kdane~L~~-g-~~l 145 (223)
+ +|+. -|. ++..+.+.+|.++ ++||||||+|.+ ++...++.|.. .+|+++.+|+ .+||+|.+++ | .++
T Consensus 173 ~naVA~-lGT-alt~~~~~~L~r~~~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~~lP~-gkDpdd~l~~~G~~~~ 249 (329)
T 4edg_A 173 KNVVAT-MGT-QLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQLPS-GMDPDEYIGKYGNDAF 249 (329)
T ss_dssp CSEEEC-SSS-CCCHHHHHHHHHHCSEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCT-TCCHHHHHHHHCHHHH
T ss_pred CeEEEC-Ccc-CCCHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEEECCC-CCCHHHHHHHhCHHHH
Confidence 4 7775 455 4777778888886 899999999999 78888888753 2789999875 6999999975 7 568
Q ss_pred HHHH-HhcCCC
Q psy4521 146 NRII-ESASPL 155 (223)
Q Consensus 146 ~~~i-~~A~~~ 155 (223)
.+.| ++|.|+
T Consensus 250 ~~~i~~~~~~~ 260 (329)
T 4edg_A 250 TTFVKNDKKSF 260 (329)
T ss_dssp HHHHHHCCEEH
T ss_pred HHHHHhcCCCH
Confidence 8885 667665
No 6
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=97.57 E-value=5.3e-05 Score=59.50 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=56.7
Q ss_pred CeEEEeCChhHHHHHhhhhcCceEEEcCCCCCCCCcccccccccCce-EEEEcCCChH---HHHHHHhhcCCCceEEEe
Q psy4521 53 DSAVLVQRLVDFLTLCNAHLNYNVICLPHGLTCLPQEILPCLEEYNK-LYLWFGKDHE---STRVFSSKLNEKRCFLIR 127 (223)
Q Consensus 53 ~~iVItEGE~Dalav~q~~~g~p~VSlP~Ga~slp~~~lp~Le~F~~-IiLw~D~D~~---~a~e~A~kLg~~RC~iV~ 127 (223)
+++||+||-.|..++.|+.. -++|+. +|.+ +++ ....|.++.+ |||++|.|.+ +++.+++.|+..-|++-+
T Consensus 21 ~~vIvVEGk~D~~~L~~~g~-~~iI~t-~Gta-l~~-~i~~l~~~~~~VIIltD~D~aGe~ir~~i~~~l~~~~~~v~~ 95 (118)
T 1t6t_1 21 EAVILVEGKNDKKALSKFSI-KNVIDL-SGKR-YAD-VVDMLEGKWEKVILLFDLDTHGERINQKMKELLSSQGFLVDE 95 (118)
T ss_dssp TSEEEESSHHHHHHHHTTTC-CCEEEC-TTSC-HHH-HHHHHTTTCSEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEC
T ss_pred CcEEEEEChHHHHHHHHhCc-CcEEEE-CCCc-HHH-HHHHHHhCCCEEEEEECCChhHHHHHHHHHHhcCccCceecH
Confidence 68999999999999999743 366665 5664 543 5556776677 9999999999 999999999988888754
No 7
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=97.47 E-value=0.00064 Score=53.38 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=67.2
Q ss_pred CCeEEEeCChhHHHHHhhhh-cCceEEEcCCCCCCCCcccc---cccccCceEEEEcCCChH---HHHHHHhhcCCCceE
Q psy4521 52 TDSAVLVQRLVDFLTLCNAH-LNYNVICLPHGLTCLPQEIL---PCLEEYNKLYLWFGKDHE---STRVFSSKLNEKRCF 124 (223)
Q Consensus 52 ~~~iVItEGE~Dalav~q~~-~g~p~VSlP~Ga~slp~~~l---p~Le~F~~IiLw~D~D~~---~a~e~A~kLg~~RC~ 124 (223)
-+++||+||..|.+++.++. ...++|+. +|. ++++.+ -.+.+-+.||+.+|+|.+ -++.+.+.|+.- .
T Consensus 4 i~~vIVVEGk~D~~~L~~~~~~~~~iI~t-~Gs--i~~~~l~~I~~~~~~r~VIi~TD~D~~GekIRk~i~~~lp~~--~ 78 (119)
T 2fcj_A 4 VEKVIIVEGRSDKQKVAAVLNEPVVIVCT-NGT--ISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRMFPEA--E 78 (119)
T ss_dssp CCEEEEESSHHHHHHHHHHBSSCCEEEEC-CSC--CCHHHHHHHHHHTTTSEEEEECCSSHHHHHHHHHHHHHCTTS--E
T ss_pred cCeEEEEechHHHHHHHHhcCCCCCEEEe-CCc--cCHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHHHCCCC--c
Confidence 36999999999999999973 13577887 775 777544 344457899999999999 888899999765 3
Q ss_pred EEecCCCCCChhHHHhCCchHHHHHHhcCCCCC
Q psy4521 125 LIRETENQPLPTESKAKGLDLNRIIESASPLCH 157 (223)
Q Consensus 125 iV~~~~~~kdane~L~~g~~l~~~i~~A~~~~~ 157 (223)
.+..+..+..-.+| ...+|.++|.+|.....
T Consensus 79 hafi~r~~~gVE~a--~~~~I~~aL~~~~~~~~ 109 (119)
T 2fcj_A 79 HLYIDRAYREVAAA--PIWHLAQVLLRARFDVR 109 (119)
T ss_dssp EECCCTTTCSTTTS--CHHHHHHHHHHTTCCBC
T ss_pred EEeccCCccCcccC--CHHHHHHHHHhcccchh
Confidence 33332222211111 12568888888766543
No 8
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=61.44 E-value=3.3 Score=35.92 Aligned_cols=43 Identities=7% Similarity=0.015 Sum_probs=32.0
Q ss_pred CCcccchhHHHHHHHHhhhhh-HHHHHhhcccCCccccCChhhHhhhcccch
Q psy4521 157 HPAIITYDVLQEDVLADLQNV-TLLLLRTMYCRRMCWLTYKTTNRFKVSNGN 207 (223)
Q Consensus 157 ~~~I~tf~dlre~V~~el~n~-~~~~~~~~~~~Gv~w~~fp~Ln~~lkG~~~ 207 (223)
.++..++.|+.+++++++.+. .... |+++ .|+.|++++.|+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~T-G~~~LD~~lgGl~~ 67 (315)
T 3bh0_A 24 DDDDGSIDEALVTVYEEIESADGNIT-------GVPS-GFTELDRMTYGYKR 67 (315)
T ss_dssp --CCCCCHHHHHHHHHHHHTCSSSCC-------SBCC-SCHHHHHHHSSBCT
T ss_pred CCCcccHHHHHHHHHHHHHhccCCCC-------CccC-ChHHHHhhcCCCCC
Confidence 356788999999999998753 2234 7877 59999999977753
No 9
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=51.90 E-value=3.7 Score=30.37 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=30.8
Q ss_pred cccccccCce------EEEEcCCChH--HHHHHHhhcCCC-ceEEEec
Q psy4521 90 ILPCLEEYNK------LYLWFGKDHE--STRVFSSKLNEK-RCFLIRE 128 (223)
Q Consensus 90 ~lp~Le~F~~------IiLw~D~D~~--~a~e~A~kLg~~-RC~iV~~ 128 (223)
+-.|||.|.+ +.+...||+. -|+++|+++... |.+-|+.
T Consensus 38 lkkyleefrkesqnikvlilvsndeeldkakelaqkmeidvrtrkvts 85 (110)
T 2kpo_A 38 LKKYLEEFRKESQNIKVLILVSNDEELDKAKELAQKMEIDVRTRKVTS 85 (110)
T ss_dssp HHHHHHHHTSSTTSEEEEEEESSHHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred HHHHHHHHHhhccCeEEEEEEcChHHHHHHHHHHHhhceeeeeeecCC
Confidence 3468888874 6777889988 999999999987 6666654
No 10
>1ywy_A Hypothetical protein PA2021; PAT85, NESG, GFT-structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Pseudomonas aeruginosa} SCOP: b.55.2.1
Probab=47.72 E-value=5.3 Score=28.53 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=18.0
Q ss_pred CCCeEEEeCChhHHHHHhhhh
Q psy4521 51 KTDSAVLVQRLVDFLTLCNAH 71 (223)
Q Consensus 51 ~~~~iVItEGE~Dalav~q~~ 71 (223)
++++|-|||-|.|||+++-+.
T Consensus 44 ~g~Rv~ItEaEAdaLtVAGA~ 64 (74)
T 1ywy_A 44 DGKRLHISEEDAQRLVVAGAE 64 (74)
T ss_dssp TTCCEECCHHHHHHHHHTTCB
T ss_pred cCcEEeccHHHhhheeecccc
Confidence 478999999999999998653
No 11
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=46.50 E-value=1.2e+02 Score=25.79 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=52.6
Q ss_pred CCCeEEEeCChhHHHHHhhhhc--C-ce----EEEcCCCCCC--CC-cccccccccCceEEEEcCCChH---HHHHHHhh
Q psy4521 51 KTDSAVLVQRLVDFLTLCNAHL--N-YN----VICLPHGLTC--LP-QEILPCLEEYNKLYLWFGKDHE---STRVFSSK 117 (223)
Q Consensus 51 ~~~~iVItEGE~Dalav~q~~~--g-~p----~VSlP~Ga~s--lp-~~~lp~Le~F~~IiLw~D~D~~---~a~e~A~k 117 (223)
+...+-|||.=.|.+|+-+.+. | |- +||-=+|.+. +. ..++..++.+++|||+++.+.. -|.-+++.
T Consensus 78 d~~~iCVVE~~~Dv~aiE~t~~y~G~YhVLgG~lSPldGigP~dL~i~~L~~Rl~~V~EVIlAtnpTvEGEaTA~YI~~~ 157 (228)
T 1vdd_A 78 DQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRL 157 (228)
T ss_dssp CTTEEEEESSHHHHHHTTTTSSCCSEEEECSSCCBGGGTBCTTTSTTGGGGGGCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCHHHHHHHHHhcccceEEEecCCccCcccCCChhhcCHHHHHHHhCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence 3458999999999999887532 1 22 2444444441 11 2455666889999999999998 56666666
Q ss_pred cCCCceEEEecC
Q psy4521 118 LNEKRCFLIRET 129 (223)
Q Consensus 118 Lg~~RC~iV~~~ 129 (223)
|-..-..+-|..
T Consensus 158 Lk~~~vkVTRiA 169 (228)
T 1vdd_A 158 LEPLGAAISRIA 169 (228)
T ss_dssp HTTSSCEEEECC
T ss_pred HHHcCCCEEEec
Confidence 655555666654
No 12
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=43.67 E-value=20 Score=28.31 Aligned_cols=24 Identities=4% Similarity=0.101 Sum_probs=19.5
Q ss_pred CCcccccccccCceEEEEcCCChH
Q psy4521 86 LPQEILPCLEEYNKLYLWFGKDHE 109 (223)
Q Consensus 86 lp~~~lp~Le~F~~IiLw~D~D~~ 109 (223)
+..+.-+++++|++|+..+|+|+.
T Consensus 102 L~~~~p~~~~~f~Rvie~v~~d~~ 125 (150)
T 3sxu_A 102 LRTSFADFATAFTEVVDFVPYEDS 125 (150)
T ss_dssp CCSSCCGGGGGCSEEEEEECSSGG
T ss_pred CCCCCCccccCCCEEEEEeCCCHH
Confidence 334555799999999999998887
No 13
>2ekm_A Hypothetical protein ST1511; NPPSFA, national project on protein ST and functional analyses, riken structural genomics/proteomi initiative; 2.06A {Sulfolobus tokodaii}
Probab=36.29 E-value=24 Score=28.70 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=30.1
Q ss_pred ceEEEEcCCChH---HHHHHHhhcCCCceEEEecCCC
Q psy4521 98 NKLYLWFGKDHE---STRVFSSKLNEKRCFLIRETEN 131 (223)
Q Consensus 98 ~~IiLw~D~D~~---~a~e~A~kLg~~RC~iV~~~~~ 131 (223)
++.+-|-+||+. .|.+-|.++|.+.++++-..++
T Consensus 55 ~~LvR~~GnD~eL~~lA~~na~~IgAGH~Fvi~l~~a 91 (162)
T 2ekm_A 55 KRLIRWDGNDEELIKLAQQTALKIGAGHTFVIYIKNG 91 (162)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHCCTTEEEEEEESS
T ss_pred ceEEEecCCcHHHHHHHHHHHHHhcCCcEEEEEecCc
Confidence 467889999999 9999999999999999997654
No 14
>1wvq_A Hypothetical protein PAE2307; phosphorylated histidine, structural genomics, unknown funct; HET: NEP; 1.45A {Pyrobaculum aerophilum} PDB: 2gl0_A* 2jb7_A*
Probab=36.01 E-value=24 Score=28.80 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=30.2
Q ss_pred ceEEEEcCCChH---HHHHHHhhcCCCceEEEecCCC
Q psy4521 98 NKLYLWFGKDHE---STRVFSSKLNEKRCFLIRETEN 131 (223)
Q Consensus 98 ~~IiLw~D~D~~---~a~e~A~kLg~~RC~iV~~~~~ 131 (223)
++.+-|-+||+. .|.+-|.++|.+.++++-..++
T Consensus 58 ~~LvR~~GnD~eL~~lA~~na~~IgAGH~Fvi~l~~a 94 (167)
T 1wvq_A 58 KRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNA 94 (167)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHCCTTEEEEEEESS
T ss_pred ceEEEecCCcHHHHHHHHHHHHHhcCCcEEEEEecCc
Confidence 467889999999 9999999999999999997654
No 15
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=34.85 E-value=59 Score=24.02 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=36.3
Q ss_pred eEEEcCCCCCCCCcccccccccCceEEEEcCCChH-----HHHHHHhhcCCC---ceEEEecCCC
Q psy4521 75 NVICLPHGLTCLPQEILPCLEEYNKLYLWFGKDHE-----STRVFSSKLNEK---RCFLIRETEN 131 (223)
Q Consensus 75 p~VSlP~Ga~slp~~~lp~Le~F~~IiLw~D~D~~-----~a~e~A~kLg~~---RC~iV~~~~~ 131 (223)
-++-||--++||...--=-|+.=.+||+|.+.... .|.++|+.+..+ |+.+....++
T Consensus 25 ~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i~~er~g~~~i~vv~eg 89 (114)
T 1svq_A 25 KVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAIDAERKGLPKVEVFCET 89 (114)
T ss_dssp EEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred EEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEeCC
Confidence 35666777777665221123344689999998765 889999888544 3555554443
No 16
>2d16_A Hypothetical protein PH1918; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=34.71 E-value=24 Score=28.70 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=30.8
Q ss_pred ceEEEEcCCChH---HHHHHHhhcCCCceEEEecCCCC
Q psy4521 98 NKLYLWFGKDHE---STRVFSSKLNEKRCFLIRETENQ 132 (223)
Q Consensus 98 ~~IiLw~D~D~~---~a~e~A~kLg~~RC~iV~~~~~~ 132 (223)
++.+-|-+||+. .|.+-|.++|.+.++++-..+++
T Consensus 54 ~~LvR~~GnD~eL~~lA~~na~~IgAGH~Fvi~l~~a~ 91 (162)
T 2d16_A 54 PQLTRYTGNDPELEALAAKNAVKIGAGHVFVILMKNAY 91 (162)
T ss_dssp TTEEEEEESCHHHHHHHHHHHHHHCCTTEEEEEEESSC
T ss_pred cceEEecCCcHHHHHHHHHHHHHhcCCcEEEEEecCcC
Confidence 567889999999 99999999999999999986543
No 17
>1vgg_A Conserved hypothetical protein TT1634; thermus thermophilus HB8, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.75A {Thermus thermophilus} SCOP: d.256.1.1
Probab=34.48 E-value=33 Score=27.82 Aligned_cols=34 Identities=24% Similarity=0.132 Sum_probs=30.1
Q ss_pred ceEEEEcCCChH---HHHHHHhhcCCCceEEEecCCC
Q psy4521 98 NKLYLWFGKDHE---STRVFSSKLNEKRCFLIRETEN 131 (223)
Q Consensus 98 ~~IiLw~D~D~~---~a~e~A~kLg~~RC~iV~~~~~ 131 (223)
++.+-|-+||+. .|.+-|.++|.+.++++-..++
T Consensus 53 ~~LvR~~GnD~eL~~lA~~na~~IgAGH~Fvi~l~~a 89 (161)
T 1vgg_A 53 KRLVRRSGTDEALVELAVKNLLNLACGHVFLIVLGEG 89 (161)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHCCTTEEEEEECTT
T ss_pred ceEEEecCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 467889999999 9999999999999999998653
No 18
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=34.33 E-value=41 Score=24.35 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=27.6
Q ss_pred EEEcCCCCCCCCcccccccccCceEEEEcCCChH-----HHHHHHhhcC
Q psy4521 76 VICLPHGLTCLPQEILPCLEEYNKLYLWFGKDHE-----STRVFSSKLN 119 (223)
Q Consensus 76 ~VSlP~Ga~slp~~~lp~Le~F~~IiLw~D~D~~-----~a~e~A~kLg 119 (223)
++-||--++||....-=-|+.-.+||+|.+.... .|.++|+.+.
T Consensus 16 ~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i~ 64 (104)
T 1kcq_A 16 ATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIR 64 (104)
T ss_dssp EEEECSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 4445555555543211123334689999998775 8889998884
No 19
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=33.15 E-value=51 Score=29.66 Aligned_cols=43 Identities=7% Similarity=0.087 Sum_probs=29.8
Q ss_pred CCcccchhHHHHHHHHhhhhh----HHHHHhhcccCCccccCChhhHhhhcccch
Q psy4521 157 HPAIITYDVLQEDVLADLQNV----TLLLLRTMYCRRMCWLTYKTTNRFKVSNGN 207 (223)
Q Consensus 157 ~~~I~tf~dlre~V~~el~n~----~~~~~~~~~~~Gv~w~~fp~Ln~~lkG~~~ 207 (223)
..+..++.++..++++++... .... |+++ .|+.|+++++|+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~t-G~~~LD~~lgGl~~ 199 (444)
T 2q6t_A 153 DTEARPMRELVHETFEHIEALFQNKGEVA-------GVRT-GFKELDQLIGTLGP 199 (444)
T ss_dssp CCSSEEHHHHHHHHHHHTTC-----------------CCC-SCHHHHHHHCCCCT
T ss_pred CCCCccHHHHHHHHHHHHHHHHhCCCCCC-------cccC-CCHhhhhhcCCcCC
Confidence 367788899999988887632 2345 7887 59999999987753
No 20
>1rlh_A Conserved hypothetical protein; structural genomics, T. acidophilum, PSI, protein structure initiative; 1.80A {Thermoplasma acidophilum} SCOP: d.256.1.1
Probab=32.42 E-value=24 Score=28.87 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=29.7
Q ss_pred ceEEEEcCCChH---HHHHHHhhcCCCceEEEecCCC
Q psy4521 98 NKLYLWFGKDHE---STRVFSSKLNEKRCFLIRETEN 131 (223)
Q Consensus 98 ~~IiLw~D~D~~---~a~e~A~kLg~~RC~iV~~~~~ 131 (223)
++.+-|-+||+. .|.+-|.++|.+-++++-+.++
T Consensus 66 ~~LvR~~GnD~eL~~lA~~na~~IgAGH~Fvi~l~~a 102 (173)
T 1rlh_A 66 DRLIRYDGNDDDLVKACIENIRRISAGHTFVILIRNA 102 (173)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHCCTTEEEEEEESC
T ss_pred ceEEEecCCcHHHHHHHHHHHHHhcCCcEEEEEecCc
Confidence 456788899999 9999999999999999998654
No 21
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=31.06 E-value=21 Score=34.62 Aligned_cols=64 Identities=11% Similarity=-0.005 Sum_probs=40.2
Q ss_pred ccccCceEEEEcCCChH---HHHHHHhhcCCC-ceEEEecCCCCCChhHHHhCCchHHHHHHhcCCCCCCcccchhHHH
Q psy4521 93 CLEEYNKLYLWFGKDHE---STRVFSSKLNEK-RCFLIRETENQPLPTESKAKGLDLNRIIESASPLCHPAIITYDVLQ 167 (223)
Q Consensus 93 ~Le~F~~IiLw~D~D~~---~a~e~A~kLg~~-RC~iV~~~~~~kdane~L~~g~~l~~~i~~A~~~~~~~I~tf~dlr 167 (223)
.+.+-+ ||||.|.|-. -+.++.+.++.+ .++.+...+ .--.+|++++++.++.. ..++.+.+-|
T Consensus 73 l~k~ad-iiiAtD~DREGE~I~~~i~~~~~~~~~v~R~~fs~---------iT~~aI~~a~~~~~~~~-~~l~~A~~aR 140 (633)
T 2gai_A 73 LAKKGE-LLIASDMDREGEAIAWHIARVTNTLGRKNRIVFSE---------ITPRVIREAVKNPREID-MKKVRAQLAR 140 (633)
T ss_dssp HHHHSC-EEECCCSSHHHHHHHHHHHHHHTCTTSSCBCCCSS---------CCHHHHHHHHHSCBCCC-HHHHHHHHHH
T ss_pred HHhhCC-EEEcCCCCcccCHHHHHHHHHcCCCCCeEEEEEcc---------CCHHHHHHHHhCCCCCc-HHHHHHHHHh
Confidence 455667 9999999998 888888888743 222222211 01246888888888764 4444444433
No 22
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=30.24 E-value=32 Score=31.37 Aligned_cols=42 Identities=7% Similarity=0.012 Sum_probs=31.5
Q ss_pred CcccchhHHHHHHHHhhhhh-HHHHHhhcccCCccccCChhhHhhhcccch
Q psy4521 158 PAIITYDVLQEDVLADLQNV-TLLLLRTMYCRRMCWLTYKTTNRFKVSNGN 207 (223)
Q Consensus 158 ~~I~tf~dlre~V~~el~n~-~~~~~~~~~~~Gv~w~~fp~Ln~~lkG~~~ 207 (223)
.+..++.|+..++++++.+. .... |+++ .|+.|+++|+|+..
T Consensus 154 ~~~~~~~~~~~~~~~~i~~~~~~~~-------gi~T-G~~~LD~~lgGl~~ 196 (444)
T 3bgw_A 154 DDDGSIDEALVTVYEEIESADGNIT-------GVPS-GFTELDRMTYGYKR 196 (444)
T ss_dssp SCCCCCHHHHHHHHHHHHTCCSSCC-------SBCC-SCHHHHHHHSSBCS
T ss_pred CCCccHHHHHHHHHHHHHHhhcCCC-------CcCC-CcHHHHhhcCCCCC
Confidence 56788889888888887542 2234 8887 59999999988753
No 23
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=28.79 E-value=1.8e+02 Score=23.17 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=30.6
Q ss_pred CceEEEcCCCCCCCCcccccccccCceEEEEcCCChH------HHHHHHhhcCCCceEEEec
Q psy4521 73 NYNVICLPHGLTCLPQEILPCLEEYNKLYLWFGKDHE------STRVFSSKLNEKRCFLIRE 128 (223)
Q Consensus 73 g~p~VSlP~Ga~slp~~~lp~Le~F~~IiLw~D~D~~------~a~e~A~kLg~~RC~iV~~ 128 (223)
..|++-+|.+.. .+++|.+.+|.... .|.++|+..+.. ..+++-
T Consensus 141 ~~PVlvv~~~~~-----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~-l~ll~v 190 (268)
T 3ab8_A 141 PVPVLLAPGEPV-----------ELEGALLGYDASESAVRALHALAPLARALGLG-VRVVSV 190 (268)
T ss_dssp SSCEEEECSSCC-----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred CCCEEEECCCCC-----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCE-EEEEEE
Confidence 467766765432 67899999998776 445677777765 777764
No 24
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=24.16 E-value=71 Score=30.55 Aligned_cols=53 Identities=13% Similarity=0.104 Sum_probs=37.1
Q ss_pred ccccCceEEEEcCCChH---HHHHHHhhcCCC--ceEEEecCCCCCChhHHHhCCchHHHHHHhcCC
Q psy4521 93 CLEEYNKLYLWFGKDHE---STRVFSSKLNEK--RCFLIRETENQPLPTESKAKGLDLNRIIESASP 154 (223)
Q Consensus 93 ~Le~F~~IiLw~D~D~~---~a~e~A~kLg~~--RC~iV~~~~~~kdane~L~~g~~l~~~i~~A~~ 154 (223)
.+.+-++||||.|.|-. -+.++.+.++.. +++.+...+- --.+|++++++...
T Consensus 99 l~k~ad~iiiAtD~DREGE~I~~~i~~~~~~~~~~v~R~~fs~i---------T~~aI~~A~~~~~~ 156 (592)
T 1mw9_X 99 LAEKADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEI---------TKNAIRQAFNKPGE 156 (592)
T ss_dssp HHHTCSEEEECCCSSHHHHHHHHHHHHHHCSCGGGEEECCCSSC---------SHHHHHHHHHSCBC
T ss_pred HHhcCCeEEEcCCCCccccHHHHHHHHHhCCCCCCeEEEEEccC---------CHHHHHHHHhCCcc
Confidence 45667899999999998 888899999853 4555554321 12457788887443
No 25
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=22.13 E-value=2.5e+02 Score=23.61 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=48.6
Q ss_pred CeEEEeCChhHHHHHhhhhc--C-ce----EEEcCCCCCCCCc-----cccccc--ccCceEEEEcCCChH---HHHHHH
Q psy4521 53 DSAVLVQRLVDFLTLCNAHL--N-YN----VICLPHGLTCLPQ-----EILPCL--EEYNKLYLWFGKDHE---STRVFS 115 (223)
Q Consensus 53 ~~iVItEGE~Dalav~q~~~--g-~p----~VSlP~Ga~slp~-----~~lp~L--e~F~~IiLw~D~D~~---~a~e~A 115 (223)
..|-|||.=.|.+|+-+.+. | |- ++|-=+|.+ |. .++..+ +.+++|||+++.... -|.=++
T Consensus 94 ~~iCVVE~~~Dv~aiE~t~~y~G~YhVLgG~iSPldGig--P~~L~i~~L~~Ri~~~~v~EVIlAtnpTvEGeaTa~Yi~ 171 (212)
T 3vdp_A 94 STICVVSHPMDVVAMEKVKEYKGVYHVLHGVISPIEGVG--PEDIRIKELLERVRDGSVKEVILATNPDIEGEATAMYIA 171 (212)
T ss_dssp EEEEEESSHHHHHHHHTTSCCCEEEEECSSCCBTTTTBC--GGGTTHHHHHHHHHHSCCSEEEECCCSSHHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHhhCccceEEEecCCccCccCCCC--ccccCHHHHHHHHhcCCCcEEEEECCCCccHHHHHHHHH
Confidence 46999999999999887632 1 22 234334443 22 233444 468999999999998 555666
Q ss_pred hhcCCCceEEEecC
Q psy4521 116 SKLNEKRCFLIRET 129 (223)
Q Consensus 116 ~kLg~~RC~iV~~~ 129 (223)
++|-..-..+-|..
T Consensus 172 ~~Lk~~~vkvTRiA 185 (212)
T 3vdp_A 172 KLLKPFGVKVTRIA 185 (212)
T ss_dssp HHHTTTTCEEEECC
T ss_pred HHhhhcCCCeeecc
Confidence 66655555555553
No 26
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=20.70 E-value=38 Score=32.97 Aligned_cols=55 Identities=13% Similarity=-0.001 Sum_probs=38.6
Q ss_pred ccccCceEEEEcCCChH---HHHHHHhhcCC-----CceEEEecCCCCCChhHHHhCCchHHHHHHhcCCCC
Q psy4521 93 CLEEYNKLYLWFGKDHE---STRVFSSKLNE-----KRCFLIRETENQPLPTESKAKGLDLNRIIESASPLC 156 (223)
Q Consensus 93 ~Le~F~~IiLw~D~D~~---~a~e~A~kLg~-----~RC~iV~~~~~~kdane~L~~g~~l~~~i~~A~~~~ 156 (223)
.+.+-++||||.|.|-. -+.++.+.++. ..++.+...+- --.+|++++++.++..
T Consensus 91 l~k~ad~iiiAtD~DREGE~I~~~i~~~~~~~~~~~~~v~R~~fs~i---------T~~aI~~A~~nlr~~~ 153 (659)
T 1i7d_A 91 FLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDL---------NPQAVERAIDRLRSNS 153 (659)
T ss_dssp HHHHCSEEEEECCSSHHHHHHHHHHHHHTTCCHHHHHTCEECCCSCC---------SHHHHHHHHTTCEEGG
T ss_pred HHhcCCeEEEcCCCCCCCCHHHHHHHHHhCccccCCCceEEEEEccC---------CHHHHHHHHhCCCCcc
Confidence 45566899999999998 88999999986 34455544320 1246888888877654
No 27
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}
Probab=20.63 E-value=21 Score=33.59 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=36.7
Q ss_pred EeeecCCCc---EEEEEEeeccccccccCCCCccccccCCCCCCCCeEEEeCChhHHHHHhhhhcCceEEEcCCCCC
Q psy4521 11 MPLVNYANE---VVGYKQVHKSIESTVPTKQCQGVLHCPPYKKKTDSAVLVQRLVDFLTLCNAHLNYNVICLPHGLT 84 (223)
Q Consensus 11 fP~~~~~g~---lvg~K~r~~~kek~~p~~~~~glFG~~~~~~~~~~iVItEGE~Dalav~q~~~g~p~VSlP~Ga~ 84 (223)
+||.+.+|+ ..|+.++.. ...=|..| |....++ ++++|.++||..|. .+.-+.-||.|.+
T Consensus 85 vp~~~D~G~v~v~~Gyrvqhn--~a~GPakG-----GiR~hp~------v~~~ev~~La~~mt-~KnAl~~lP~GGg 147 (470)
T 2bma_A 85 VCWLDDNGVQRKNRCFRVQYN--SALGPYKG-----GLRFHPS------VNLSIVKFLGFEQI-FKNSLTGLSMGGG 147 (470)
T ss_dssp EEEECTTSCEEEEEEEEEEEE--CSSSSEEE-----EEEECTT------CCHHHHHHHHHHHH-HHHHHTCSSCEEE
T ss_pred EEEEeCCCCEEEEEEEEEEEC--CCCCCCCC-----CeEeeCC------CCHHHHHHHHHHHH-HHHHhcCCCCCCc
Confidence 599999987 456666554 22223332 3333332 57899999998874 2223456887765
No 28
>3kk4_A Uncharacterized protein BP1543; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: CME; 1.95A {Bordetella pertussis tohama I}
Probab=20.52 E-value=22 Score=27.84 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.8
Q ss_pred hhcccchhhhcChhhHhhhhh
Q psy4521 201 FKVSNGNAFRLCPEFWEVIEE 221 (223)
Q Consensus 201 ~lkG~~~~~~~~~~~~~~~~~ 221 (223)
.+.|++.-.+|=+.||++++|
T Consensus 24 rI~GhrTSIrLE~~FW~~L~e 44 (125)
T 3kk4_A 24 RLHGVATSVRLEQLFWDVLEE 44 (125)
T ss_dssp EETTEEEEEEEEHHHHHHHHH
T ss_pred EECCEeeeeehhHHHHHHHHH
Confidence 468999999999999999986
No 29
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=20.38 E-value=63 Score=28.59 Aligned_cols=38 Identities=3% Similarity=0.005 Sum_probs=25.6
Q ss_pred chhHHHHHHHHhhhhh-----HHHHHhhcccCCccccCChhhHhhhcccch
Q psy4521 162 TYDVLQEDVLADLQNV-----TLLLLRTMYCRRMCWLTYKTTNRFKVSNGN 207 (223)
Q Consensus 162 tf~dlre~V~~el~n~-----~~~~~~~~~~~Gv~w~~fp~Ln~~lkG~~~ 207 (223)
++.|+..++++++... ..+. |+++ .|+.|+++++|+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-------gi~T-G~~~LD~~~gGl~~ 45 (338)
T 4a1f_A 3 NIKEVLESAMDLITENQRKGSLEVT-------GIPT-GFVQLDNYTSGFNK 45 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCCC-------SBCC-SCHHHHHHHCSBCT
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCcC-------cccC-CChHHHHHhcCCCC
Confidence 3566666666665432 1344 8887 59999999998864
Done!