RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4521
         (223 letters)



>gnl|CDD|224163 COG1242, COG1242, Predicted Fe-S oxidoreductase [General function
           prediction only].
          Length = 312

 Score = 28.4 bits (64), Expect = 3.2
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query: 85  CLPQEILPCLEEYNK-LYLW 103
           CLP ++L  L EYNK   +W
Sbjct: 126 CLPDDVLDLLAEYNKRYEVW 145


>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
           unknown].
          Length = 652

 Score = 28.1 bits (63), Expect = 4.6
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 130 ENQPLPTESKAKGLDLNRIIESASPLCHPAIITYDV 165
           + + L  ES+ +G+D + ++E  S L  P ++  DV
Sbjct: 263 DGEVLDLESR-RGIDRSEVVEFISELGKPVVVATDV 297


>gnl|CDD|227612 COG5293, COG5293, Predicted ATPase [General function prediction
           only].
          Length = 591

 Score = 27.6 bits (61), Expect = 6.2
 Identities = 35/153 (22%), Positives = 54/153 (35%), Gaps = 18/153 (11%)

Query: 48  YKKKTDSAVLVQRLVDFLTLCNAHLNYNVICLPHGL----TCLPQEILPCLEEYNKLYLW 103
           +          + LV+ +    A LN   I +        T L ++IL C +E   LY  
Sbjct: 250 FDFHAQDYAETEELVNTVDERIAELNNRRISMQSHWKRVKTSLKEQILFCPDEIQVLYEE 309

Query: 104 FG--------KDHESTRVFSSKLNEKR-CFL---IRETENQPLPTESKAKGLDLNRIIES 151
            G        KD E    F+  + E+R  +L   I E E       ++   L   R  E 
Sbjct: 310 VGVLFPGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLG-KRRAEG 368

Query: 152 ASPL-CHPAIITYDVLQEDVLADLQNVTLLLLR 183
            + L        Y  L E+++A    +  L  R
Sbjct: 369 LAFLKNRGVFEKYQTLCEEIIALRGELAELEYR 401


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,768,060
Number of extensions: 953838
Number of successful extensions: 606
Number of sequences better than 10.0: 1
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 6
Length of query: 223
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 130
Effective length of database: 6,812,680
Effective search space: 885648400
Effective search space used: 885648400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)