RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4521
(223 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 2e-04
Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 43/207 (20%)
Query: 27 HKSIESTVPTKQCQGVLHC--PPYKKKTDSAVLVQRLVDFL--TLCNAHLNYNVICLPHG 82
H E+ Q + +L + D + + D L ++ ++I
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFD----CKDVQDMPKSILSKEEID-HIIMSKDA 60
Query: 83 LTCLPQEILPCLEEYNKLYLWFGKDHESTRVF-SSKLNEKRCFLIRETENQPLPTESKAK 141
++ + L + E + F L FL+ P+ TE +
Sbjct: 61 VSGT-LRLFWTLLSKQE---------EMVQKFVEEVLRINYKFLM-----SPIKTEQRQP 105
Query: 142 GLDLNRIIESASPLCH--PAIITYDVLQEDVLADLQNVTLLLLR-----TMYCRRM--C- 191
+ IE L + Y+V + L+ LL LR + +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELRPAKNVLID--GVLGSG 162
Query: 192 --WLTYKTTNRFKVSNGNAFRLCPEFW 216
W+ +KV F++ FW
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKI---FW 186
Score = 32.9 bits (74), Expect = 0.077
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 44 HCPPYKKKTDSAVLVQRLVDFLTLCNAHLNYNVICLPHGLTCLPQEILPCLEEYNKLY 101
+ P Y++ LV ++DFL +L IC + T L + L + E ++
Sbjct: 537 NDPKYER------LVNAILDFLPKIEENL----ICSKY--TDLLRIAL--MAEDEAIF 580
Score = 27.9 bits (61), Expect = 3.1
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 26/146 (17%)
Query: 3 NTETKTLYMPLVNYANEVVGYKQVHKS-IES-TVPTKQCQGVLHCPP-----YK------ 49
T ++ + ++ +H+S ++ +P L P Y
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 50 KKTDSAVLVQRLVDFLTLCNAHLNYNV----ICLPHGLTCLPQEILPCLEEYNKLYLWFG 105
K + +R+ F + L++ I IL L++ K Y +
Sbjct: 482 KNIEHP---ERMTLFRMV---FLDFRFLEQKIRHDSTAWNASGSILNTLQQL-KFYKPYI 534
Query: 106 KDHESTRVFSSKLNEKRCFLIRETEN 131
D++ + +N FL + EN
Sbjct: 535 CDNDPK--YERLVNAILDFLPKIEEN 558
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.089
Identities = 41/275 (14%), Positives = 77/275 (28%), Gaps = 145/275 (52%)
Query: 57 LVQRLVDFLTLCNAHLNYNVICLPHGLTCLPQEILPCL---------------------- 94
++Q L + Y V G T P E+ L
Sbjct: 243 VIQ-------LAH----YVVTAKLLGFT--PGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 95 EEYN-------KLYLWFG-KDHESTRVF---------SSKLNE------------KRCFL 125
E + + + G + +E+ S + NE + +
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 126 ---IRETENQPLPTES------------------------------KAK---GLDLNRI- 148
+ +T N LP KAK GLD +RI
Sbjct: 350 QDYVNKT-NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 149 --------------IESA---SPLCHPA--IITYDVLQEDVL----------------AD 173
+ ++ S L PA +I D+++ +V +D
Sbjct: 409 FSERKLKFSNRFLPV-ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 174 LQ----NVTLLLLRTMYCRRMCWLTYKTTNRFKVS 204
L+ +++ ++ + + W +TT +FK +
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKW---ETTTQFKAT 499
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.49
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 13/32 (40%)
Query: 24 KQVHKSIESTVPTKQCQGVLHCPPYKKKTDSA 55
KQ K +++++ K L+ DSA
Sbjct: 19 KQALKKLQASL--K-----LYAD------DSA 37
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 27.5 bits (61), Expect = 4.4
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 87 PQEILPCLEEYNKLYLWFGKD--HESTRVFSSKLNEKRCFLIRETENQP 133
P + + +FGK ES R+ + N + FL+RE+E
Sbjct: 135 PSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTK 183
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein
initiative, MCSG, structural genomics, midwest center
for S genomics; HET: MSE; 2.01A {Streptococcus
pneumoniae}
Length = 216
Score = 26.7 bits (59), Expect = 6.0
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 67 LCNAHLNYNVICLPHGLTCLPQEILPCLEEYNKLYL--WFGKDHESTRVFSSKLNEKRCF 124
L + N + +P+ L L+ + G + RV + N +
Sbjct: 104 LYSQINGGNALSIPYAKGFGWGAEL-TLKLMFERLFAEEMGGGYPRERVIPEQRNARILN 162
Query: 125 LIRETENQPLPTESKA 140
+++ + L T K
Sbjct: 163 EVKQITHNDLMTILKI 178
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory
for structural genomics, secsg, protein structure
initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP:
d.63.1.2
Length = 179
Score = 25.7 bits (56), Expect = 9.9
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 137 ESKAKGLDLNRIIESASPLCHPAIITYDVLQEDVLADLQNVTLLLLRTMYCRRMCWLTYK 196
E K K + L + + + QEDV ++ LL +R ++ + +LT+K
Sbjct: 12 EIKFK-IKLEDFLHTLNTF--NPEFVRYEEQEDVYFEVPRPKLLRIRGVHNLKKYYLTFK 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.425
Gapped
Lambda K H
0.267 0.0541 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,207,254
Number of extensions: 170821
Number of successful extensions: 293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 13
Length of query: 223
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 133
Effective length of database: 4,188,903
Effective search space: 557124099
Effective search space used: 557124099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)