Query psy4522
Match_columns 560
No_of_seqs 249 out of 1538
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 19:19:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2446|consensus 100.0 3E-161 6E-166 1235.9 37.6 542 8-559 2-544 (546)
2 PTZ00430 glucose-6-phosphate i 100.0 8E-152 2E-156 1238.9 55.7 533 9-558 2-552 (552)
3 PRK00179 pgi glucose-6-phospha 100.0 1E-151 3E-156 1239.3 56.7 545 7-560 2-547 (548)
4 PLN02649 glucose-6-phosphate i 100.0 2E-149 4E-154 1223.7 56.9 532 10-559 8-555 (560)
5 PRK14095 pgi glucose-6-phospha 100.0 2E-148 4E-153 1206.4 52.9 514 10-557 7-532 (533)
6 PF00342 PGI: Phosphoglucose i 100.0 7E-137 2E-141 1116.5 40.9 485 62-553 1-486 (486)
7 PRK14096 pgi glucose-6-phospha 100.0 1E-121 2E-126 996.2 48.0 451 42-534 9-463 (528)
8 COG0166 Pgi Glucose-6-phosphat 100.0 9E-113 2E-117 912.5 38.4 442 58-550 3-446 (446)
9 PRK14097 pgi glucose-6-phospha 100.0 3.7E-95 8E-100 783.0 41.4 365 132-535 57-434 (448)
10 PRK00973 glucose-6-phosphate i 100.0 8.1E-94 1.8E-98 770.1 43.2 343 157-535 71-429 (446)
11 PRK03868 glucose-6-phosphate i 100.0 7.2E-91 1.6E-95 742.9 37.3 391 100-534 12-408 (410)
12 PRK09533 bifunctional transald 100.0 7.5E-66 1.6E-70 588.9 37.2 333 131-539 437-773 (948)
13 cd05016 SIS_PGI_2 Phosphogluco 100.0 1.4E-52 3.1E-57 396.0 15.1 160 341-532 1-164 (164)
14 cd05015 SIS_PGI_1 Phosphogluco 100.0 7.9E-34 1.7E-38 267.6 17.6 155 132-295 2-158 (158)
15 PRK08674 bifunctional phosphog 100.0 2.2E-31 4.7E-36 279.7 23.9 289 156-529 33-335 (337)
16 cd05798 SIS_TAL_PGI SIS_TAL_PG 100.0 6.4E-29 1.4E-33 224.7 11.4 127 343-532 2-129 (129)
17 TIGR02128 G6PI_arch bifunction 99.5 1.4E-11 3.1E-16 128.3 26.0 281 157-528 21-306 (308)
18 cd05017 SIS_PGI_PMI_1 The memb 99.0 2.6E-09 5.7E-14 95.8 11.0 114 159-292 1-115 (119)
19 PRK11382 frlB fructoselysine-6 98.1 5.7E-05 1.2E-09 80.0 14.3 109 133-264 28-137 (340)
20 COG2222 AgaS Predicted phospho 98.0 2.8E-05 6.1E-10 82.2 10.5 107 133-262 23-130 (340)
21 TIGR02815 agaS_fam putative su 98.0 3.6E-05 7.7E-10 82.6 10.4 126 132-278 25-153 (372)
22 cd05710 SIS_1 A subgroup of th 97.9 0.00011 2.3E-09 66.2 10.5 116 159-296 1-117 (120)
23 cd05005 SIS_PHI Hexulose-6-pho 97.6 0.00084 1.8E-08 64.4 11.9 99 134-263 20-119 (179)
24 PRK13938 phosphoheptose isomer 97.5 0.0016 3.5E-08 63.8 13.6 105 158-276 46-167 (196)
25 cd05013 SIS_RpiR RpiR-like pro 97.5 0.0021 4.6E-08 57.6 13.4 112 136-276 2-114 (139)
26 TIGR00441 gmhA phosphoheptose 97.5 0.00093 2E-08 62.8 11.0 114 138-276 2-133 (154)
27 cd05006 SIS_GmhA Phosphoheptos 97.5 0.0013 2.8E-08 62.9 12.3 126 134-280 16-159 (177)
28 TIGR03127 RuMP_HxlB 6-phospho 97.5 0.00075 1.6E-08 64.6 10.5 99 134-263 17-116 (179)
29 cd05008 SIS_GlmS_GlmD_1 SIS (S 97.5 0.00044 9.4E-09 61.9 8.1 88 160-263 2-90 (126)
30 COG1737 RpiR Transcriptional r 97.3 0.0025 5.5E-08 65.8 12.6 106 133-264 116-222 (281)
31 PRK11557 putative DNA-binding 97.3 0.0022 4.8E-08 65.6 11.7 104 134-263 115-219 (278)
32 PRK13936 phosphoheptose isomer 97.3 0.0079 1.7E-07 58.9 14.6 120 136-276 32-168 (197)
33 PRK15482 transcriptional regul 97.2 0.0027 5.8E-08 65.4 11.7 103 135-263 123-226 (285)
34 PRK00414 gmhA phosphoheptose i 97.2 0.004 8.6E-08 60.8 12.1 102 158-275 45-164 (192)
35 PRK10886 DnaA initiator-associ 97.2 0.0057 1.2E-07 60.0 13.1 107 158-276 42-166 (196)
36 cd05014 SIS_Kpsf KpsF-like pro 97.2 0.0014 3E-08 58.9 8.1 89 159-263 2-91 (128)
37 PRK11337 DNA-binding transcrip 97.2 0.0088 1.9E-07 61.7 15.1 112 135-275 128-240 (292)
38 PRK13937 phosphoheptose isomer 97.1 0.0071 1.5E-07 58.7 12.4 95 158-264 39-151 (188)
39 PRK11302 DNA-binding transcrip 97.0 0.0094 2E-07 61.0 12.8 104 134-263 115-218 (284)
40 COG0794 GutQ Predicted sugar p 97.0 0.0046 1E-07 60.7 9.8 89 159-263 41-130 (202)
41 PF01380 SIS: SIS domain SIS d 97.0 0.0021 4.5E-08 57.5 6.9 102 157-276 5-107 (131)
42 PTZ00295 glucosamine-fructose- 96.9 0.0028 6E-08 72.8 9.0 92 156-263 321-413 (640)
43 PRK00331 glucosamine--fructose 96.9 0.008 1.7E-07 68.6 12.6 91 157-263 289-380 (604)
44 PRK11543 gutQ D-arabinose 5-ph 96.9 0.0051 1.1E-07 64.3 10.1 104 135-263 29-133 (321)
45 PLN02981 glucosamine:fructose- 96.9 0.0031 6.7E-08 72.9 8.9 91 157-263 363-454 (680)
46 PRK14101 bifunctional glucokin 96.8 0.018 4E-07 66.1 14.4 103 135-263 456-558 (638)
47 PTZ00394 glucosamine-fructose- 96.7 0.011 2.4E-07 68.2 11.6 91 157-263 354-445 (670)
48 cd04795 SIS SIS domain. SIS (S 96.7 0.014 3.1E-07 48.3 9.2 80 160-254 1-81 (87)
49 TIGR01135 glmS glucosamine--fr 96.5 0.0058 1.3E-07 69.7 7.8 92 156-263 290-382 (607)
50 PRK10892 D-arabinose 5-phospha 96.2 0.034 7.3E-07 58.3 10.7 102 136-262 35-137 (326)
51 cd05009 SIS_GlmS_GlmD_2 SIS (S 96.0 0.042 9.2E-07 50.4 9.5 98 136-259 2-101 (153)
52 cd05007 SIS_Etherase N-acetylm 96.0 0.091 2E-06 53.7 12.4 107 136-263 38-162 (257)
53 PRK05441 murQ N-acetylmuramic 95.8 0.1 2.2E-06 54.5 12.3 104 137-262 52-174 (299)
54 TIGR00393 kpsF KpsF/GutQ famil 95.6 0.048 1E-06 55.2 8.8 88 159-262 2-90 (268)
55 TIGR00274 N-acetylmuramic acid 95.6 0.1 2.2E-06 54.3 11.0 44 208-262 125-169 (291)
56 PRK12570 N-acetylmuramic acid- 95.5 0.17 3.6E-06 52.9 12.5 104 138-262 49-170 (296)
57 PRK02947 hypothetical protein; 95.0 0.17 3.6E-06 51.4 10.3 39 208-257 105-143 (246)
58 PF13580 SIS_2: SIS domain; PD 92.0 1.6 3.4E-05 40.1 10.3 85 159-255 37-138 (138)
59 COG0449 GlmS Glucosamine 6-pho 90.4 0.5 1.1E-05 53.6 6.2 85 156-257 282-367 (597)
60 PTZ00295 glucosamine-fructose- 82.8 7.2 0.00016 45.1 10.4 114 135-275 484-599 (640)
61 COG0279 GmhA Phosphoheptose is 76.0 71 0.0015 30.8 12.7 95 158-263 42-153 (176)
62 PF03668 ATP_bind_2: P-loop AT 63.4 58 0.0013 34.0 10.1 95 158-266 2-102 (284)
63 KOG1268|consensus 57.5 12 0.00027 41.8 4.2 72 157-233 355-426 (670)
64 TIGR03339 phn_lysR aminoethylp 57.4 74 0.0016 31.5 9.7 116 73-203 2-130 (279)
65 COG1434 Uncharacterized conser 53.4 64 0.0014 31.5 8.3 90 158-256 66-159 (223)
66 PF02698 DUF218: DUF218 domain 52.2 51 0.0011 30.2 7.0 52 197-257 57-108 (155)
67 PF05673 DUF815: Protein of un 50.6 1.5E+02 0.0034 30.3 10.5 161 130-305 32-201 (249)
68 cd02201 FtsZ_type1 FtsZ is a G 47.9 44 0.00095 34.9 6.4 38 159-200 2-40 (304)
69 PF01339 CheB_methylest: CheB 47.9 9.3 0.0002 37.0 1.3 60 162-221 1-62 (182)
70 PRK13018 cell division protein 47.0 59 0.0013 35.3 7.3 38 159-200 30-68 (378)
71 PRK02261 methylaspartate mutas 46.6 2.4E+02 0.0051 26.0 11.3 74 159-239 5-81 (137)
72 PRK03601 transcriptional regul 44.4 2.2E+02 0.0049 28.5 10.9 118 69-203 2-135 (275)
73 cd02191 FtsZ FtsZ is a GTPase 42.7 82 0.0018 33.0 7.5 38 159-200 2-40 (303)
74 PRK10837 putative DNA-binding 42.3 2.4E+02 0.0053 28.1 10.8 118 67-203 2-135 (290)
75 cd06259 YdcF-like YdcF-like. Y 41.9 1.5E+02 0.0033 26.8 8.4 87 132-257 18-105 (150)
76 cd02202 FtsZ_type2 FtsZ is a G 41.3 55 0.0012 35.1 6.0 43 159-204 2-49 (349)
77 CHL00180 rbcR LysR transcripti 41.2 2.6E+02 0.0055 28.5 10.8 112 66-192 3-130 (305)
78 PF04816 DUF633: Family of unk 40.9 70 0.0015 31.6 6.2 67 157-224 67-145 (205)
79 PRK09330 cell division protein 39.7 1E+02 0.0022 33.6 7.7 37 159-199 15-52 (384)
80 PF14606 Lipase_GDSL_3: GDSL-l 39.6 56 0.0012 31.8 5.2 56 159-216 35-100 (178)
81 cd02067 B12-binding B12 bindin 39.2 1.9E+02 0.0041 25.2 8.3 64 168-239 12-77 (119)
82 PF01041 DegT_DnrJ_EryC1: DegT 39.0 85 0.0018 33.3 7.1 63 168-239 71-139 (363)
83 PF05377 FlaC_arch: Flagella a 39.0 30 0.00065 27.2 2.6 20 492-517 35-54 (55)
84 PRK11074 putative DNA-binding 39.0 3.6E+02 0.0077 27.3 11.5 110 68-192 2-127 (300)
85 PF02826 2-Hacid_dh_C: D-isome 38.4 1.2E+02 0.0027 28.7 7.5 84 133-224 7-107 (178)
86 COG0634 Hpt Hypoxanthine-guani 38.1 3.7E+02 0.0081 26.2 10.4 124 131-275 15-151 (178)
87 cd02071 MM_CoA_mut_B12_BD meth 37.8 2.9E+02 0.0063 24.5 9.6 64 169-239 13-77 (122)
88 TIGR01501 MthylAspMutase methy 37.7 3.3E+02 0.0072 25.1 10.5 65 169-240 15-80 (134)
89 TIGR00640 acid_CoA_mut_C methy 37.0 3E+02 0.0066 25.1 9.4 68 166-240 13-81 (132)
90 PF06792 UPF0261: Uncharacteri 37.0 2.9E+02 0.0062 30.4 10.6 30 340-369 305-334 (403)
91 PRK13529 malate dehydrogenase; 37.0 7E+02 0.015 28.7 14.0 135 39-192 186-336 (563)
92 TIGR00065 ftsZ cell division p 35.9 1E+02 0.0023 33.0 7.1 37 159-199 19-56 (349)
93 COG1660 Predicted P-loop-conta 35.4 4.3E+02 0.0094 27.5 10.9 130 159-316 3-138 (286)
94 COG2185 Sbm Methylmalonyl-CoA 34.8 2.3E+02 0.005 26.6 8.2 101 154-267 10-118 (143)
95 PRK10094 DNA-binding transcrip 34.2 4.2E+02 0.0092 27.1 11.2 113 68-195 2-131 (308)
96 PRK11194 ribosomal RNA large s 31.6 2.3E+02 0.0051 30.7 8.9 48 131-180 134-181 (372)
97 PRK10082 cell density-dependen 31.6 3.7E+02 0.0081 27.2 10.2 102 66-182 9-123 (303)
98 PRK11199 tyrA bifunctional cho 31.6 6.4E+02 0.014 27.1 12.4 124 68-205 15-142 (374)
99 PF13460 NAD_binding_10: NADH( 31.2 4E+02 0.0086 24.5 9.6 59 187-257 42-100 (183)
100 KOG2015|consensus 31.0 39 0.00084 36.0 2.7 29 159-192 42-71 (422)
101 COG2236 Predicted phosphoribos 29.8 4.3E+02 0.0094 26.0 9.7 41 133-180 12-52 (192)
102 cd06191 FNR_iron_sulfur_bindin 29.6 2.4E+02 0.0052 27.5 8.1 61 158-219 103-170 (231)
103 cd06215 FNR_iron_sulfur_bindin 28.3 2.4E+02 0.0053 27.3 7.9 61 158-219 104-171 (231)
104 cd01485 E1-1_like Ubiquitin ac 28.2 2.5E+02 0.0054 27.3 7.8 20 158-179 20-39 (198)
105 PRK08264 short chain dehydroge 28.2 5.4E+02 0.012 24.7 11.3 60 158-218 7-83 (238)
106 COG2103 Predicted sugar phosph 27.3 7.4E+02 0.016 25.9 12.4 101 136-259 49-168 (298)
107 COG0569 TrkA K+ transport syst 26.9 3.7E+02 0.008 26.7 8.9 77 159-258 2-78 (225)
108 TIGR00322 diphth2_R diphthamid 26.8 3.9E+02 0.0084 28.5 9.5 107 147-264 159-282 (332)
109 COG1929 Glycerate kinase [Carb 26.4 2.7E+02 0.0058 30.2 8.0 32 208-239 201-232 (378)
110 PF10432 bact-PGI_C: Bacterial 26.3 1.8E+02 0.004 27.3 6.2 54 476-529 100-154 (155)
111 PF02887 PK_C: Pyruvate kinase 26.2 69 0.0015 28.3 3.2 41 211-266 18-58 (117)
112 PTZ00271 hypoxanthine-guanine 26.2 3.5E+02 0.0076 26.9 8.5 97 132-239 32-144 (211)
113 PTZ00394 glucosamine-fructose- 26.1 2.2E+02 0.0048 33.3 8.1 112 136-275 515-628 (670)
114 TIGR02424 TF_pcaQ pca operon t 25.6 6.9E+02 0.015 25.0 12.1 119 67-201 2-136 (300)
115 PLN02828 formyltetrahydrofolat 24.9 1.7E+02 0.0037 30.3 6.1 53 209-275 70-131 (268)
116 cd01492 Aos1_SUMO Ubiquitin ac 24.8 1.3E+02 0.0028 29.4 5.1 31 158-192 22-52 (197)
117 cd06211 phenol_2-monooxygenase 23.9 2.7E+02 0.0058 27.4 7.3 61 158-219 110-177 (238)
118 PRK11139 DNA-binding transcrip 23.8 3.3E+02 0.007 27.5 8.1 108 66-191 4-128 (297)
119 TIGR02036 dsdC D-serine deamin 23.5 5.8E+02 0.013 25.8 10.0 110 66-192 6-131 (302)
120 PRK07609 CDP-6-deoxy-delta-3,4 23.4 5.6E+02 0.012 26.8 10.0 60 158-218 205-271 (339)
121 PLN02331 phosphoribosylglycina 23.2 1.7E+02 0.0036 29.0 5.6 40 378-417 104-144 (207)
122 PRK05442 malate dehydrogenase; 22.9 6.9E+02 0.015 26.5 10.5 30 209-238 81-115 (326)
123 PRK15409 bifunctional glyoxyla 22.8 2.8E+02 0.006 29.3 7.5 55 133-192 114-176 (323)
124 PRK13010 purU formyltetrahydro 22.6 2.7E+02 0.0059 29.1 7.2 24 394-417 207-230 (289)
125 PRK15423 hypoxanthine phosphor 22.5 4.5E+02 0.0097 25.3 8.2 44 132-180 13-57 (178)
126 PLN02252 nitrate reductase [NA 22.0 6E+02 0.013 30.9 10.8 61 157-218 758-827 (888)
127 PRK05416 glmZ(sRNA)-inactivati 21.9 6E+02 0.013 26.5 9.6 90 158-260 7-99 (288)
128 cd01483 E1_enzyme_family Super 21.7 1.1E+02 0.0024 27.6 3.8 30 159-192 1-30 (143)
129 cd04258 AAK_AKiii-LysC-EC AAK_ 21.6 4.2E+02 0.0092 27.7 8.4 45 150-198 184-229 (292)
130 COG0820 Predicted Fe-S-cluster 21.0 1.4E+02 0.003 32.2 4.6 44 132-180 133-176 (349)
131 PLN02928 oxidoreductase family 20.9 3E+02 0.0065 29.4 7.3 55 133-192 133-189 (347)
132 PF01488 Shikimate_DH: Shikima 20.8 2.3E+02 0.0049 25.6 5.6 44 158-206 13-56 (135)
133 PRK07535 methyltetrahydrofolat 20.7 3.3E+02 0.0071 27.9 7.3 93 94-222 4-102 (261)
134 PRK10341 DNA-binding transcrip 20.6 9E+02 0.019 24.5 11.3 113 68-195 7-135 (312)
135 PRK11151 DNA-binding transcrip 20.6 8.8E+02 0.019 24.4 11.6 119 69-202 2-136 (305)
136 PRK05447 1-deoxy-D-xylulose 5- 20.4 2.1E+02 0.0045 31.3 5.9 50 158-209 2-52 (385)
137 TIGR02313 HpaI-NOT-DapA 2,4-di 20.1 4.9E+02 0.011 27.0 8.5 22 66-87 16-37 (294)
No 1
>KOG2446|consensus
Probab=100.00 E-value=2.6e-161 Score=1235.93 Aligned_cols=542 Identities=71% Similarity=1.130 Sum_probs=521.6
Q ss_pred CCCCCcHHHHHHHHHHHhcCCCCchHHHhccCcCccccceEEecCCCCCCCeEEeccCCCCCHHHHHHHHHHHHhhcHHH
Q psy4522 8 SPLLEEPVCKKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDFSKNRIDDQGMNLLFELAKARKIEE 87 (560)
Q Consensus 8 ~~~t~~~~w~~L~~~a~~~~~~~~l~~lf~~d~~R~~~~s~~~~~~~~~~gl~lD~Skq~i~~~~l~~L~~la~~~~l~~ 87 (560)
+.++++|+|++|+.|+++..+.+++++||++||+|++++++++..+ ++++|++|||||++++++++.|+.||+.+++.+
T Consensus 2 ~~~t~~p~~~~lq~~~e~~~k~~~lk~lf~kD~~r~~k~~~~~~~~-~~~~il~D~Skn~~tdE~v~~l~~laK~~~v~~ 80 (546)
T KOG2446|consen 2 SLLTNLPAWQKLQRHVESDGKHLDLKDLFEKDPDRFEKFSLTFFTQ-KDGGILLDYSKNRITDEIVDLLLMLAKFRAVEE 80 (546)
T ss_pred CcccccHHHHHHHHHHHHhhcchhHHHHHhhCHHHHHhhhhhhccC-CCCcEEEEeccccccHHHHHHHHHHHHHhhHHH
Confidence 3467899999999999987777999999999999999999998553 246799999999999999999999999999999
Q ss_pred HHHHhhCCccCCCcchHHHHHHHHHcCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccC
Q psy4522 88 AREKMFNGERINFTEDRAVLHVALRNLSNRPILVDCQDVTPAVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGG 167 (560)
Q Consensus 88 ~~~~~f~G~~in~te~r~~lH~aLR~~~~~~~~~~g~~~~~~v~~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGG 167 (560)
+|++||+||+||+||+|+|+|+|||++...|+.++|++++|+|+.++++|++|+++||+|.|+|+|||+|++||+|||||
T Consensus 81 ~~d~mf~Ge~iN~tE~RaVlHvaLRn~~~~pi~~dg~~v~peV~~vL~~ikeFsd~i~SG~w~g~tgk~itdVvnIGIGG 160 (546)
T KOG2446|consen 81 ARDAMFKGEHINFTENRAVLHVALRNRANRPILVDGKDVMPEVENVLDHIKEFSDDIRSGSWKGYTGKKITDVVNIGIGG 160 (546)
T ss_pred HHHHHhcCcccCCCCCceeeeHHhhCcccCceecCCcccchhHHHHHHHHHHHHHHhhcCCCCCCCCCeeeeEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhcCCCC-CCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccc
Q psy4522 168 SDLGPLMVTEALKPYAV-GPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASV 246 (560)
Q Consensus 168 S~LGp~~~~~al~~~~~-~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~ 246 (560)
|+|||.|+.+||++|.. ++++||++|+||..+.+.+++||||+|||||+||||||.||+.|++.+++|++++..+...+
T Consensus 161 SdLGP~mVteALk~y~~~gl~~~FvsNiD~t~ia~~~~kl~pEttLfiVaSKTftT~ETitnaetak~w~~a~~~d~s~V 240 (546)
T KOG2446|consen 161 SDLGPLMVTEALKPYGPGGLEVHFVSNIDGTHIAEVLKKLNPETTLFIVASKTFTTAETITNAETAKEWFLAKAKDPSAV 240 (546)
T ss_pred cccchHHHHHhhccCCCCCceEEEEecCCchhHHHHHhccCccceEEEEEecCcCcHHHHhhHHHHHHHHHhhcCChHHH
Confidence 99999999999999976 59999999999999999999999999999999999999999999999999999987777778
Q ss_pred cCeEEEEecCchhHHhcccccCCeeeccCCCCCCcccchhhhHHHHHhhCchhHHHHHhHHHHHHHHhcCCCCCCCHHHH
Q psy4522 247 AKHFVALSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNIGYNNFERLLAGAHFMDNHFQNTPINKNAPVI 326 (560)
Q Consensus 247 ~~h~vaVTt~~~~~~~~gi~~~~~f~~~d~VGGRfSv~SavGL~~a~~~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~~ 326 (560)
++||||++||..+..+|||++.|+|+||||||||||+||||||++|+.+|+++|++||+||+.||+||+++|+++|+|++
T Consensus 241 AkhfvAlstN~~~v~~fgid~~nmF~fwDWVGGRySlwSAvGLsiaL~iGf~Nfe~~L~GA~~mDehf~tTp~ekN~p~l 320 (546)
T KOG2446|consen 241 AKHFVALSTNTAEVEKFGIDPKNMFEFWDWVGGRYSLWSAVGLSIALYIGFDNFEKLLKGAHAMDEHFRTTPLEKNIPVL 320 (546)
T ss_pred HHHHHHHhccHHHHHHhCCCcccccchhhhccCeeehhhhcCcceeeehhHHHHHHHhhhhHHHHHHhhcCCcccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEeChhhHHhHHHHHhHhhhHhcCcccccCCeeeeccccceecCCCCCCcchhHHHHHHhcC
Q psy4522 327 LALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGT 406 (560)
Q Consensus 327 lAll~~~~~~~~g~~~~~l~~Y~~~L~~l~~w~qQL~~ES~GK~~~~~G~~~~~~tgpiv~g~~Gt~dqHS~~Qll~qG~ 406 (560)
+|++.+||++++|+++++++||++.|.+|++|+||+.||||||.++++|.+++|.||||+||++|||+|||||||+|||+
T Consensus 321 lal~~vwysn~~G~~t~~vlPYdqyl~rF~~YlQQ~~MESnGK~vt~~g~~v~~~tG~ivwGepGTn~QHaf~QlihqGt 400 (546)
T KOG2446|consen 321 LALLSVWYSNFFGAETHAVLPYDQYLHRFAAYLQQLSMESNGKEVTRDGNPVNYSTGLIVWGEPGTNGQHAFYQLIHQGT 400 (546)
T ss_pred HHHHHHHHhccCCCCceEEeehHHHHHHHHHHHHHhhhhhcCceeecCCccccccccceeecCCCCCchhHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccceeEeccCCCCCCCcchhhHHHhhhhhhhHHHHhCCCCHHHHHHHHHHcCCChhhhhhhcCCcccCCCcceeEEEE
Q psy4522 407 KLIPADFIAPAISQNPIENNLHHKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQGNRPTNSIVV 486 (560)
Q Consensus 407 ~~~~~dfi~~~~~~~~~~~~~~~~~l~~n~laq~~al~~Gk~~~~~~~~~~~~g~~~~~~~~l~~~~~~~g~rPs~~I~l 486 (560)
+.+|||||.+.+.++|+.+..||+.+++||++|++|||.||+.+++.+|.. ..++||++|.||||+++|.+
T Consensus 401 r~ip~dFi~p~ks~~Pi~~~~hh~~llsNf~aq~ealm~Gkt~~~~~~Eg~---------~~l~phk~f~gnRpt~Si~~ 471 (546)
T KOG2446|consen 401 RLIPADFIEPLKSHNPIHDGLHHKMLLSNFLAQTEALMVGKTPEEAKKEGT---------ASLLPHKVFSGNRPTISIVL 471 (546)
T ss_pred ccccHHHhhhhhccCCcccchhHHHHHhhhhcchHHHHcCCCHHHHHhccc---------ccccchhhhcCCCCceeEEe
Confidence 999999999999999888889999999999999999999999998877641 23889999999999999999
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhHHhhcCCCCCCCCchHHHHHHHHHhc
Q psy4522 487 KKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQDKNPVTSHDASTNGLINFLKSY 559 (560)
Q Consensus 487 ~~l~~~~LG~Lia~yE~~t~v~g~l~gINpFDQpGVE~gK~~a~~i~~~~~~~~~~~~~d~st~~li~~~~~~ 559 (560)
++++|++||+|||+|||+++++|.+||||+|||||||+||++|++|+++|+...+...||+||.++|+.++++
T Consensus 472 ~kvTP~tlGAlIA~YEh~ifv~g~iw~INSfdQwGVElGKklAk~V~~~l~~~~~v~~~d~stn~li~~lk~~ 544 (546)
T KOG2446|consen 472 QKVTPFTLGALIALYEHKIFVQGIIWNINSFDQWGVELGKKLAKEVLAELDSSGTVLTHDASTNGLINLLKEI 544 (546)
T ss_pred eccChHHHHHHHHHHHHHHhhheeEeccccccchhhHHHHHHHHHHHHHHhccccccccccccchHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999888888999999999998764
No 2
>PTZ00430 glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=7.8e-152 Score=1238.94 Aligned_cols=533 Identities=43% Similarity=0.746 Sum_probs=497.3
Q ss_pred CCCCcHHHHHHHHHHHhcCCCCchHHHhccCcCccccceEEecCCCCCCCeEEeccCCCCCHHHHHHHHHHHHhhcHHHH
Q psy4522 9 PLLEEPVCKKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDFSKNRIDDQGMNLLFELAKARKIEEA 88 (560)
Q Consensus 9 ~~t~~~~w~~L~~~a~~~~~~~~l~~lf~~d~~R~~~~s~~~~~~~~~~gl~lD~Skq~i~~~~l~~L~~la~~~~l~~~ 88 (560)
+++++++|++|++|+++ .+..+|+++|+ ||+|+++|++++ +||+||||||+||++++++|++||++++|+++
T Consensus 2 ~~~~~~~~~~l~~~~~~-~~~~~l~~~f~-~~~R~~~~~~~~------~~l~lD~sk~~v~~~~~~~l~~la~~~~l~~~ 73 (552)
T PTZ00430 2 DLESLKSYKNLLSLAEK-LKKVHLRDLLK-DEERNKSLIKEF------KGVTLDLSRQRLDEETLKLLIELAEEAKLKEK 73 (552)
T ss_pred CCcccHHHHHHHHHHHH-hccCCHHHHhc-CcchHHhheeee------CCEEEEccCCCCCHHHHHHHHHHHHhCChHHH
Confidence 56778999999999998 47789999996 999999999998 89999999999999999999999999999999
Q ss_pred HHHhhCCccCCCcchHHHHHHHHHcCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCC
Q psy4522 89 REKMFNGERINFTEDRAVLHVALRNLSNRPILVDCQDVTPAVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGS 168 (560)
Q Consensus 89 ~~~~f~G~~in~te~r~~lH~aLR~~~~~~~~~~g~~~~~~v~~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS 168 (560)
|++||+|++||.||+|+|||+|||.+.+.++.++|+++++++++++++|++|+++||+|+|+|+||++|++||+||||||
T Consensus 74 ~~~m~~G~~iN~tE~R~vlH~alR~~~~~~~~~~g~~~~~~v~~~l~~~~~f~~~v~~g~~~g~tg~~~~~VV~IGIGGS 153 (552)
T PTZ00430 74 IKDMFNGEKINTTENRAVLHTALRAPRGEKVVVDGKNVLEDVHEVLDRIKKFSDKIRSGEILGSTGKKLKNVICIGIGGS 153 (552)
T ss_pred HHHHHCCCcCCCCCCcccccHhhcCCcCCCcccCCchhHHHHHHHHHHHHHHHHHHHcCCccCCCCCeeceEEEEcCCcc
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhcCCCC------CCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCC
Q psy4522 169 DLGPLMVTEALKPYAV------GPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKD 242 (560)
Q Consensus 169 ~LGp~~~~~al~~~~~------~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~ 242 (560)
+|||+|+++||.++.. ++++||++|+||.++.++++.|||++|||||+||||||+||++|++.+|+||.++++.
T Consensus 154 ~LGp~~v~~AL~~~~~~~~~~~~~~~~Fv~NvDp~~~~~~l~~ldp~~TLfiViSKSgtT~ETl~n~~~~r~wl~~~~~~ 233 (552)
T PTZ00430 154 YLGTEFVYEALRTYGEAREASKGRKLRFLANVDPIDVRRATEGLDPEETLVVIISKTFTTAETMLNAKTVRQWLLDNIKS 233 (552)
T ss_pred chHHHHHHHHHhhcccccccccCCcEEEEeCCCHHHHHHHHhhCCcccEEEEEEeCCCCCHHHHHHHHHHHHHHHHhccc
Confidence 9999999999987532 3789999999999999999999999999999999999999999999999999876544
Q ss_pred cccccCeEEEEecCchhHHhcccccCCeeeccCCCCCCcccchhhhHHHHHh-hCchhHHHHHhHHHHHHHHhcCCCCCC
Q psy4522 243 PASVAKHFVALSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALN-IGYNNFERLLAGAHFMDNHFQNTPINK 321 (560)
Q Consensus 243 ~~~~~~h~vaVTt~~~~~~~~gi~~~~~f~~~d~VGGRfSv~SavGL~~a~~-~G~d~~~~lL~GA~~md~~f~~~~~~~ 321 (560)
...+.+||||||++.+.+.+|||++.|+|+||||||||||+||+|||+|+++ +|+|+|++||+||++||+||+++|+++
T Consensus 234 ~~~~~~h~vavT~~~~~a~~~gi~~~~~f~~~d~VGGRySv~SaVGLlP~al~~G~d~~~~lL~GA~~md~hf~~~~~~~ 313 (552)
T PTZ00430 234 KEALSKHLCAVSTNLKLTSEFGIPDENVFGFWDWVGGRFSVTSAVGILPLSIQFGYDIVQQFLNGCHDMDEHFRTAPLEE 313 (552)
T ss_pred cccccCeEEEEcCchHHHHHcCCchhcEecCcCCcCCcceeeccchhHHHHHHcChHHHHHHHHHHHHHHHHHhcCChhh
Confidence 3457899999999999999999998899999999999999999999877777 599999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhccCCCceEEEEeChhhHHhHHHHHhHhhhHhcCcccccCCeeeeccccceecCCCCCCcchhHHHH
Q psy4522 322 NAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQL 401 (560)
Q Consensus 322 N~p~~lAll~~~~~~~~g~~~~~l~~Y~~~L~~l~~w~qQL~~ES~GK~~~~~G~~~~~~tgpiv~g~~Gt~dqHS~~Ql 401 (560)
|+|++||++++||.+++|+++++++||+++|++||+|+|||+||||||+++++|++++|+|||+|||++||+|||||+||
T Consensus 314 N~pvllall~~~~~~~~g~~~~~vlpY~~~L~~f~~wlqQL~mES~GK~v~~~G~~v~~~tG~~~~G~~Gt~dQHSf~Ql 393 (552)
T PTZ00430 314 NLPVLLGLTSFYNSTFLGYNCVAILPYCQALLKFPAHVQQLLMESNGKSVTLDGNTLDYNTGEIYFGEPGTNGQHSFYQL 393 (552)
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEecHHHHHHHHHHHHHHHHHhcCCccccCCCCcccCccceeeCCCCCCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcccceeEeccCCCCCC--Ccc--hhhHHHhhhhhhhHHHHhCCCCHHHHHHHHHHcCCChhhhhhhcCCcccCC
Q psy4522 402 IHQGTKLIPADFIAPAISQNPI--ENN--LHHKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQG 477 (560)
Q Consensus 402 l~qG~~~~~~dfi~~~~~~~~~--~~~--~~~~~l~~n~laq~~al~~Gk~~~~~~~~~~~~g~~~~~~~~l~~~~~~~g 477 (560)
|||| +++|+|||.+.++.+++ ... .+|+.+++|||+|.++|+.||+.++++.+ +. .+++.+|++|+|
T Consensus 394 lhqG-~~~~~~FI~~~~~~~~~~i~~~~~~~~~~llan~laq~~aL~~Gk~~~~~~~~----~~----~~~l~~~~~~~g 464 (552)
T PTZ00430 394 LHQG-RVVPSEFIGFAKSQNPIKLLGEPVSNHDELMSNFFAQPDALAFGKTYEELEKE----GV----PEELIPHKVFPG 464 (552)
T ss_pred HHcC-CCcceEEEEEeccCCCcCcCccccccHHHHHhhhHHHHHHHHcCCCHHHHHhc----cc----hhhhhhcccCCC
Confidence 9999 99999999988754332 111 47899999999999999999999887552 22 246778999999
Q ss_pred CcceeEEEEccCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhHHhhcCCC-------CCCCCchHH
Q psy4522 478 NRPTNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQDKNP-------VTSHDASTN 550 (560)
Q Consensus 478 ~rPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~l~gINpFDQpGVE~gK~~a~~i~~~~~~~~~-------~~~~d~st~ 550 (560)
||||++|+++++||++||+|||+|||+|+++|+|||||||||||||+||++|++|++++.++.. ...+|+||+
T Consensus 465 nrPs~~I~l~~l~p~~lG~LialyEh~v~v~G~lwgINpFDQpGVElGK~la~~i~~~~~~~~~~~~~~~~~~~~d~st~ 544 (552)
T PTZ00430 465 NRPSLLLLFPELNPYTIGQLLALYEHRTVVEGFLWNINSFDQWGVELGKVLAKDVRNLFKDNRSNSSPHAKESKFNGSTK 544 (552)
T ss_pred CCceEEEEeCCCCHHHHHHHHHHHHHHHHHhhhccCcCCCCCccHHHHHHHHHHHHHHHhcccccccccccccCCChHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987654 456999999
Q ss_pred HHHHHHHh
Q psy4522 551 GLINFLKS 558 (560)
Q Consensus 551 ~li~~~~~ 558 (560)
+||+++++
T Consensus 545 ~li~~~~~ 552 (552)
T PTZ00430 545 RLLSYYLQ 552 (552)
T ss_pred HHHHHHhC
Confidence 99999874
No 3
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=100.00 E-value=1.4e-151 Score=1239.29 Aligned_cols=545 Identities=66% Similarity=1.080 Sum_probs=516.3
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCCCchHHHhccCcCccccceEEecCCCCCCCeEEeccCCCCCHHHHHHHHHHHHhhcHH
Q psy4522 7 PSPLLEEPVCKKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDFSKNRIDDQGMNLLFELAKARKIE 86 (560)
Q Consensus 7 ~~~~t~~~~w~~L~~~a~~~~~~~~l~~lf~~d~~R~~~~s~~~~~~~~~~gl~lD~Skq~i~~~~l~~L~~la~~~~l~ 86 (560)
|++++.+++|++|++|+++ .++.+|+++|++||+|+++|++++ +||++|||||+||++++++|++||++++|+
T Consensus 2 ~~~~~~~~~~~~l~~~~~~-~~~~~l~~lf~~~~~R~~~~~~~~------~~~~lD~sk~~i~~~~~~~l~~la~~~~l~ 74 (548)
T PRK00179 2 NINLTQTPAWQALQAHADE-IKDVHLRDLFAADPDRFERFSLTA------GGLLLDYSKNRITDETLALLLDLAREAGLE 74 (548)
T ss_pred CCCccchHHHHHHHHHHHh-cccCCHHHHhccCchHHHhceeec------CCEEEEccCCCCCHHHHHHHHHHHHhCChH
Confidence 4557778999999999988 477899999999999999999998 899999999999999999999999999999
Q ss_pred HHHHHhhCCccCCCcchHHHHHHHHHcCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHcCcccccCCCCcCeEEEEccc
Q psy4522 87 EAREKMFNGERINFTEDRAVLHVALRNLSNRPILVDCQDVTPAVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIG 166 (560)
Q Consensus 87 ~~~~~~f~G~~in~te~r~~lH~aLR~~~~~~~~~~g~~~~~~v~~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiG 166 (560)
++|++||+|++||.||+|+|||+|||.|.+.++.++|+++.+++++++++|++|+++||+|+|+|+||++|++||+||||
T Consensus 75 ~~~~~~~~G~~iN~tE~R~vlH~alR~~~~~~~~~~~~~~~~~v~~~l~~~~~f~~~i~~g~~~g~~g~~~~~vV~IGIG 154 (548)
T PRK00179 75 GARDAMFAGEKINTTEDRAVLHTALRNPSNTPILVDGQDVMPEVHAVLARMKAFAEAVRSGEWKGYTGKAITDVVNIGIG 154 (548)
T ss_pred HHHHHHhCCCCCCCCCCcchhhHHhhCCcCCccccCCchhhHHHHHHHHHHHHHHHHHHhCCccCCCCCccCeEEEECCC
Confidence 99999999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHhcCCC-CCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCccc
Q psy4522 167 GSDLGPLMVTEALKPYA-VGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPAS 245 (560)
Q Consensus 167 GS~LGp~~~~~al~~~~-~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~ 245 (560)
||+|||+|+++||.++. .++++||++|+||.++.++++.+||++|+|||+||||||+||++|++.+++||.++++++..
T Consensus 155 GS~LGp~~~~~al~~~~~~~~~l~fl~nvDp~~~~~~l~~l~~~~TL~iViSKSgtT~ET~~n~~~~~~~l~~~~~~~~~ 234 (548)
T PRK00179 155 GSDLGPVMVTEALRPYADPGLRVHFVSNVDGAHLAETLKKLDPETTLFIVASKTFTTQETLTNAHSARDWFLAAGGDEAA 234 (548)
T ss_pred cchHHHHHHHHHhhhhccCCCceEEEeCCCHHHHHHHHhcCCcccEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCcccc
Confidence 99999999999998753 35789999999999999999999999999999999999999999999999999877554224
Q ss_pred ccCeEEEEecCchhHHhcccccCCeeeccCCCCCCcccchhhhHHHHHhhCchhHHHHHhHHHHHHHHhcCCCCCCCHHH
Q psy4522 246 VAKHFVALSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNIGYNNFERLLAGAHFMDNHFQNTPINKNAPV 325 (560)
Q Consensus 246 ~~~h~vaVTt~~~~~~~~gi~~~~~f~~~d~VGGRfSv~SavGL~~a~~~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~ 325 (560)
..+||||||++.+++.++||++.|+|+||||||||||+||+|||+||+++|+|+|++||+||++||+||+++|+++|+|+
T Consensus 235 ~~~h~vaVT~~~~~~~~~g~~~~~~F~~~d~VGGRfSvlSavGL~pa~~~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~ 314 (548)
T PRK00179 235 VAKHFVAVSTNAEAVAEFGIDPDNMFGFWDWVGGRYSLWSAIGLSIALAIGPDNFEELLAGAHAMDEHFRTAPLEKNLPV 314 (548)
T ss_pred ccceEEEEcCCcHHHHHcCCchhcEEECCCCCCCcceecchhhHHHHHHhCcHHHHHHHHHHHHHHHHHhcCChhhCHHH
Confidence 68999999999999999999988999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEeChhhHHhHHHHHhHhhhHhcCcccccCCeeeeccccceecCCCCCCcchhHHHHHHhc
Q psy4522 326 ILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQG 405 (560)
Q Consensus 326 ~lAll~~~~~~~~g~~~~~l~~Y~~~L~~l~~w~qQL~~ES~GK~~~~~G~~~~~~tgpiv~g~~Gt~dqHS~~Qll~qG 405 (560)
+||++++||.+++|+++++++||+++|++|++|+|||+||||||+++++|+++.++|+||+||++||+|||||+||||||
T Consensus 315 llall~~~~~~~~g~~~~vllpY~~~L~~f~~w~qQL~mES~GK~~~~~G~~v~~~t~piv~g~~Gt~dQHSf~QllhqG 394 (548)
T PRK00179 315 LLALIGVWYRNFFGAQSHAVLPYDQYLHRFPAYLQQLEMESNGKSVDRDGTPVDYQTGPIIWGEPGTNGQHAFFQLLHQG 394 (548)
T ss_pred HHHHHHHHHHhcCCCCeEEEecchHHHHHHHHHHHHHhhhhcCCccccCCCccccCccceeecCCCCchhHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccceeEeccCCCCCCCcchhhHHHhhhhhhhHHHHhCCCCHHHHHHHHHHcCCChhhhhhhcCCcccCCCcceeEEE
Q psy4522 406 TKLIPADFIAPAISQNPIENNLHHKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQGNRPTNSIV 485 (560)
Q Consensus 406 ~~~~~~dfi~~~~~~~~~~~~~~~~~l~~n~laq~~al~~Gk~~~~~~~~~~~~g~~~~~~~~l~~~~~~~g~rPs~~I~ 485 (560)
++++|+|||.+.++.++. ..+|+.+++||++|.++|+.||+.++++.++...|++.+..+++++|++|+|||||++|+
T Consensus 395 ~~~~~~~FI~~~~~~~~~--~~~~~~l~~n~~aq~~al~~Gk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gnrPs~~i~ 472 (548)
T PRK00179 395 TKLVPADFIAPAQPHNPL--GDHHDLLLANCFAQTEALMFGKTAEEVRAELRAKGLDEAEAEELAPHKVFPGNRPSTTIL 472 (548)
T ss_pred CCCeeeEEEEEcCCCCcc--chhhHhhcCCccccHHHHhcCCCHHHHHHHHhhcccchhHHHHhhhcccCCCCCceEEEE
Confidence 999999999988765443 357899999999999999999999999998888888888888999999999999999999
Q ss_pred EccCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhHHhhcCCCCCCCCchHHHHHHHHHhcC
Q psy4522 486 VKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQDKNPVTSHDASTNGLINFLKSYF 560 (560)
Q Consensus 486 l~~l~~~~LG~Lia~yE~~t~v~g~l~gINpFDQpGVE~gK~~a~~i~~~~~~~~~~~~~d~st~~li~~~~~~~ 560 (560)
++++||++||+|||||||+|+++|+|||||||||||||+||++|++|+.++.++.....+|+||++||++++.++
T Consensus 473 l~~l~p~~lG~LialyEh~~~v~g~l~gIN~FDQpGVElGK~la~~il~~~~~~~~~~~~d~sT~~li~~~~~~~ 547 (548)
T PRK00179 473 LDRLTPFTLGALIALYEHKVFVQGVIWGINSFDQWGVELGKQLAKRILPELEGDSEASAHDSSTNGLINRYRAWR 547 (548)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHhhhccCcCCCCchhHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999876555579999999999998753
No 4
>PLN02649 glucose-6-phosphate isomerase
Probab=100.00 E-value=1.8e-149 Score=1223.70 Aligned_cols=532 Identities=48% Similarity=0.784 Sum_probs=494.8
Q ss_pred CCCcHHHHHHHHHHHhcCCCCchHHHhccCcCccccceEEecCCCCCCCeEEeccCCCCCHHHHHHHHHHHHhhcHHHHH
Q psy4522 10 LLEEPVCKKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDFSKNRIDDQGMNLLFELAKARKIEEAR 89 (560)
Q Consensus 10 ~t~~~~w~~L~~~a~~~~~~~~l~~lf~~d~~R~~~~s~~~~~~~~~~gl~lD~Skq~i~~~~l~~L~~la~~~~l~~~~ 89 (560)
++++++|++|++|++. .++.+|+++| +||+|+++|++++ +||++|||||+||++++++|++||++++|.++|
T Consensus 8 ~~~~~~w~~l~~~~~~-~~~~~l~~lf-~~~~R~~~~~~~~------~~l~~D~sk~~v~~~~l~~l~~la~~~~l~~~~ 79 (560)
T PLN02649 8 ISDTPAWKRLVAHVYQ-IKKTHLRELL-NDAERCQSMIAEF------DGIYLDYSRQRVTDETMELLFPLAEAANLFEKI 79 (560)
T ss_pred CcccHHHHHHHHHHHH-hccCCHHHHh-cCccchhhceeee------CCEEEEccCCcCCHHHHHHHHHHHHhCChHHHH
Confidence 3567899999999988 4778999999 9999999999998 899999999999999999999999999999999
Q ss_pred HHhhCCccCCCcchHHHHHHHHHcCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCc
Q psy4522 90 EKMFNGERINFTEDRAVLHVALRNLSNRPILVDCQDVTPAVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSD 169 (560)
Q Consensus 90 ~~~f~G~~in~te~r~~lH~aLR~~~~~~~~~~g~~~~~~v~~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~ 169 (560)
++||+|++||.||+|+|||+|||.|.+.+..++|++++++|++++++|++|+++||+|+|+|+||++|++||+||||||+
T Consensus 80 ~~m~~G~~iN~tE~R~vlH~aLR~~~~~~~~~~g~~~~~~v~~~l~r~~~f~~~vr~g~~~g~tg~~~~~VV~IGIGGS~ 159 (560)
T PLN02649 80 EAMFSGEIINSTEDRAVLHVALRAPRLAPILVDGKNVVPEVWEVLDKIKAFSEDVRSGKWKGATGKRFTNVVSIGIGGSF 159 (560)
T ss_pred HHHhCCCCCCCCCCcchhhHHhhCCCCCCcccCCchhHHHHHHHHHHHHHHHHHHHcCCcccCCCCccceEEEEecCcch
Confidence 99999999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCC------CCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCc
Q psy4522 170 LGPLMVTEALKPYAV------GPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDP 243 (560)
Q Consensus 170 LGp~~~~~al~~~~~------~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~ 243 (560)
|||+|+++||.++.. ++++||++|+||.++.++++.+||++|+|||+||||+|+||++|++.+|+||.++++.
T Consensus 160 LGp~~v~~AL~~~~~~~~~~~~~~~~fv~NvDp~~~~~~l~~l~p~~TL~iViSKSgtT~ET~~n~~~~r~~l~~~~g~- 238 (560)
T PLN02649 160 LGPLFVHEALATDPEALKSAKGRKLRFLANVDPVDIARQIAQLDPETTLVVVVSKTFTTAETMLNARTVRKWLRDALGG- 238 (560)
T ss_pred HHHHHHHHHHhhhccccccccCCcEEEEeCCCHHHHHHHHhhCCcccEEEEEEeCCCCCHHHHHHHHHHHHHHHhhccc-
Confidence 999999999987532 3589999999999999999999999999999999999999999999999999876443
Q ss_pred ccccCeEEEEecCchhHHhcccccCCeeeccCCCCCCcccchhhhHHHHHhh-CchhHHHHHhHHHHHHHHhcCCCCCCC
Q psy4522 244 ASVAKHFVALSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNI-GYNNFERLLAGAHFMDNHFQNTPINKN 322 (560)
Q Consensus 244 ~~~~~h~vaVTt~~~~~~~~gi~~~~~f~~~d~VGGRfSv~SavGL~~a~~~-G~d~~~~lL~GA~~md~~f~~~~~~~N 322 (560)
..+.+|||+||++.+....++++..++|+||||||||||+||+|||+|++++ |+|+|++||+||++||+||+++|+++|
T Consensus 239 ~~~~~h~vavT~~~~l~~~a~~~~~~~F~~~d~VGGRfSv~SavGLlP~ala~G~d~~~~lL~GA~~md~hf~~~~~~~N 318 (560)
T PLN02649 239 LAVAKHMVAVSTNLLLVNKFGIDPWNAFPFWDWVGGRYSVCSAVGLLPLSLQYGFDVVEEFLEGAASMDEHFRTAPLKEN 318 (560)
T ss_pred ccccceEEEECCChHHHHHhCcCCccEEeCCCCCCCceeecchhhHHHHHHHhCHHHHHHHHHHHHHHHHHHhcCChhhC
Confidence 3468999999988877788899988999999999999999999998777776 999899999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEeChhhHHhHHHHHhHhhhHhcCcccccCCeeeeccccceecCCCCCCcchhHHHHH
Q psy4522 323 APVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLI 402 (560)
Q Consensus 323 ~p~~lAll~~~~~~~~g~~~~~l~~Y~~~L~~l~~w~qQL~~ES~GK~~~~~G~~~~~~tgpiv~g~~Gt~dqHS~~Qll 402 (560)
+|++||++++||.+++|+++++++||+++|++|++|+|||+||||||+++++|++++++|||+|||++||+|||||+|||
T Consensus 319 ~p~llAll~~~~~~~~g~~~~vilpY~~~L~~f~~w~qQL~mES~GK~~~~~G~~v~~~tG~~~~g~~Gt~dQHSf~Qll 398 (560)
T PLN02649 319 IPVLLGLLSVWNSSFLGYPARAILPYSQALLKFAPHIQQLDMESNGKGVDLDGNPLPVNTGEIDFGEPGTNGQHSFYQLI 398 (560)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEeccchhHHHHHHHHHHHHHHhcCCccccCCCCcccCccceEecCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcccceeEeccCCCCCC-C----cchhhHHHhhhhhhhHHHHhCCCCHHHHHHHHHHcCCChhhhhhhcCCcccCC
Q psy4522 403 HQGTKLIPADFIAPAISQNPI-E----NNLHHKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQG 477 (560)
Q Consensus 403 ~qG~~~~~~dfi~~~~~~~~~-~----~~~~~~~l~~n~laq~~al~~Gk~~~~~~~~~~~~g~~~~~~~~l~~~~~~~g 477 (560)
||| +++|+|||.+.++.++. . ...+|+.|++||++|.+||+.||+.++++.+ + ..+++++|++++|
T Consensus 399 hqG-~~~~~~FI~~~~~~~~~~i~~~~~~~~~~~L~an~~aq~~aL~~Gk~~~~~~~~----~----~~~~l~~~~~~~g 469 (560)
T PLN02649 399 HQG-RNIPCDFIGVVRSQQPVHLWLGEGVSNHDELMSNFFAQPDALAYGKTPEQLRAE----G----VPEELIPHKVFAG 469 (560)
T ss_pred HcC-CCeeeEEEEECCcCCccccccccccchHHHHHHHHHhhHHHHHcCCCHHHHHhh----c----chhhhhhcccCCC
Confidence 999 99999999987654332 1 1247999999999999999999999988653 2 2346779999999
Q ss_pred CcceeEEEEccCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhHHhhcC----CCCCCCCchHHHHH
Q psy4522 478 NRPTNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQDK----NPVTSHDASTNGLI 553 (560)
Q Consensus 478 ~rPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~l~gINpFDQpGVE~gK~~a~~i~~~~~~~----~~~~~~d~st~~li 553 (560)
||||++|.++++||++||+|||||||+|+++|+|||||||||||||+||++|++|++++.++ .....||+||++||
T Consensus 470 nrPs~~i~l~~l~p~~lG~LialyEh~v~v~G~lw~IN~FDQpGVElGK~la~~i~~~l~~~~~~~~~~~~~d~sT~~li 549 (560)
T PLN02649 470 NRPSLSILLPELTAYTVGQLLALYEHRVAVQGFIWNINSFDQWGVELGKALAKRVRAVLNEARTKGEPVEGFNSSTTALL 549 (560)
T ss_pred CCceEEEEeCCCCHHHHHHHHHHHHHHHHHhhhccCcCCCCchhHHHHHHHHHHHHHHhhcccccCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999765 33456999999999
Q ss_pred HHHHhc
Q psy4522 554 NFLKSY 559 (560)
Q Consensus 554 ~~~~~~ 559 (560)
++++.+
T Consensus 550 ~~~~~~ 555 (560)
T PLN02649 550 NHYLAN 555 (560)
T ss_pred HHHHhc
Confidence 999875
No 5
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=2e-148 Score=1206.36 Aligned_cols=514 Identities=39% Similarity=0.628 Sum_probs=479.9
Q ss_pred CCCcHHHHHHHHHHHhcCCCCchHHHhccCcCccccceEEecCCCCCCCeEEeccCCCCCHHHHHHHHHHHHhhcHHHHH
Q psy4522 10 LLEEPVCKKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDFSKNRIDDQGMNLLFELAKARKIEEAR 89 (560)
Q Consensus 10 ~t~~~~w~~L~~~a~~~~~~~~l~~lf~~d~~R~~~~s~~~~~~~~~~gl~lD~Skq~i~~~~l~~L~~la~~~~l~~~~ 89 (560)
++++++|++|++|++. .++.+++++| ||+|+++|+++. +||++|||||+||++++++|++||++++|+++|
T Consensus 7 ~~~~~~~~~l~~~~~~-~~~~~l~~~~--~~~R~~~~~~~~------~~l~~d~sk~~~~~~~~~~l~~la~~~~l~~~~ 77 (533)
T PRK14095 7 FLDLESFKILQELAPE-PLDLTLPGVL--SEERIKKYSLSG------EGFTYNYATERVDDRILAALQNLADEAELIEKM 77 (533)
T ss_pred cccCHHHHHHHHHHHh-hccCChhhhc--CchhHHhceeec------CCEEEEccCCcCCHHHHHHHHHHHHHCCcHHHH
Confidence 5667999999999988 4778999987 899999999998 899999999999999999999999999999999
Q ss_pred HHhhCCccCC-----CcchHHHHHHHHHcCCCCCcc-cCCCcchhhHHHHHHHHHHHHHHHHcCcccccCCCCcCeEEEE
Q psy4522 90 EKMFNGERIN-----FTEDRAVLHVALRNLSNRPIL-VDCQDVTPAVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNI 163 (560)
Q Consensus 90 ~~~f~G~~in-----~te~r~~lH~aLR~~~~~~~~-~~g~~~~~~v~~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~i 163 (560)
++||+|++|| .||+|+|||+|||++.+.++. ++|.+++++++++++||++|+++||+|+|+|+||++|++||+|
T Consensus 78 ~~m~~G~~iN~~~~~~tE~R~vlH~alR~~~~~~~~~~~~~~~~~~v~~~l~~~~~f~~~vr~g~~~g~tg~~~~~VV~I 157 (533)
T PRK14095 78 KAMQNGAVINRIEGFPSENRPVLHTATRGQVGDSVLTDEAEDMAEFSKRELERLAEFLKKVRSGEIKNSNGKKFTTVVQI 157 (533)
T ss_pred HHHhCcccccCCCCCCCCCcchhhHHhhCcCCCCccccCcchhhHHHHHHHHHHHHHHHHHHcCCccCCCCCccceEEEE
Confidence 9999999999 999999999999999887764 8999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHhcCCC-CCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCC
Q psy4522 164 GIGGSDLGPLMVTEALKPYA-VGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKD 242 (560)
Q Consensus 164 GiGGS~LGp~~~~~al~~~~-~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~ 242 (560)
|||||+|||+|+++||.++. .+.++||++|+||.++.++++.+||++|||||+||||||.||++|++.+++|+++.+.
T Consensus 158 GIGGS~LGp~av~~AL~~~~~~~~~l~fvsNvDp~~~~e~L~~ldpe~TLfiviSKSGtT~ETl~n~~~~r~wl~~~G~- 236 (533)
T PRK14095 158 GIGGSDLGPKALYLALKNYAKKDKRVHFISNVDPDDAAEVLSEIDLAKTLFIVVSKSGTTLETAANEEFVRDALKKAGL- 236 (533)
T ss_pred ecCcchHhHHHHHHHHHhhccCCceEEEECCCCHHHHHHHHhcCCcccEEEEEEeCCCCCHHHHHHHHHHHHHHHHcCc-
Confidence 99999999999999998763 3468999999999999999999999999999999999999999999999999987642
Q ss_pred cccccCeEEEEecCchhHHhcccccCCeeeccCCCCCCcccchhhhHHHHHh-hCchhHHHHHhHHHHHHHHhcCCCCCC
Q psy4522 243 PASVAKHFVALSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALN-IGYNNFERLLAGAHFMDNHFQNTPINK 321 (560)
Q Consensus 243 ~~~~~~h~vaVTt~~~~~~~~gi~~~~~f~~~d~VGGRfSv~SavGL~~a~~-~G~d~~~~lL~GA~~md~~f~~~~~~~ 321 (560)
++++||||||++++++.++ +...++|+||||||||||+||+|||+|+++ +|+|+|++||+||++||+||+++|+++
T Consensus 237 --~~~~h~VaVT~~~s~l~~~-~~~~~~f~~~d~VGGRfSv~SavGLlp~ala~G~d~~~~lL~GA~~mD~hf~~~~~~~ 313 (533)
T PRK14095 237 --DYKKHFIAVTSEGSPMDDE-SGYLEVFHMWDSIGGRFSSTSMVGGVVLGFAFGFEVFKEFLKGAAAMDKAALNPNIRE 313 (533)
T ss_pred --cccceEEEEECCchHHHhh-cCccccCCCCCCCCCcccccccchHHHHHHHcChHHHHHHHHHHHHHHHHHhcCChhh
Confidence 3678999999999988887 355589999999999999999999776665 599999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhccCCCceEEEEeChhhHHhHHHHHhHhhhHhcCcccccCCeeeeccccceecCCCCCCcchhHHHH
Q psy4522 322 NAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQL 401 (560)
Q Consensus 322 N~p~~lAll~~~~~~~~g~~~~~l~~Y~~~L~~l~~w~qQL~~ES~GK~~~~~G~~~~~~tgpiv~g~~Gt~dqHS~~Ql 401 (560)
|+|+++|++++||++++|+++++++||+++|++||+|+|||+||||||+++++|+++.++||||+||++||||||||+||
T Consensus 314 N~p~l~All~~~~~~~~g~~~~~~lpY~~~L~~f~~~lqQL~mESnGK~v~~~G~~v~~~t~pi~wg~~Gt~~QHSf~Ql 393 (533)
T PRK14095 314 NLPLLAALIGIWNRNFLGYPTTAVIPYSQALERFPAHLQQLDMESNGKSVNRFGEPINFKTGPIIWGEPGTNGQHSFFQL 393 (533)
T ss_pred CHHHHHHHHHHHHhccCCCCeEEEecchHHHHHHHHHHHHHHHHhcCCccccCCCCcccCcccceecCCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcccceeEeccCCCCC----CCcchhhHHHhhhhhhhHHHHhCCCCHHHHHHHHHHcCCChhhhhhhcCCcccCC
Q psy4522 402 IHQGTKLIPADFIAPAISQNP----IENNLHHKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQG 477 (560)
Q Consensus 402 l~qG~~~~~~dfi~~~~~~~~----~~~~~~~~~l~~n~laq~~al~~Gk~~~~~~~~~~~~g~~~~~~~~l~~~~~~~g 477 (560)
||||++++|+|||.+.++.++ +.+..+|+.|++||+||.+||+.||+.+ .+|++++|
T Consensus 394 lhqG~~~~~~dFI~~~~~~~~~d~~i~~~~~~~~L~an~~Aq~~al~~G~~~~-------------------~~~~~~~g 454 (533)
T PRK14095 394 LHQGTDIVPVEFIGFKESQLGQDIVIQGSTSQQKLFANLIAQIIALACGKENT-------------------NPNKNFKG 454 (533)
T ss_pred HhcCCCCcceeEEEEcCCCCcccccCCCCchHHHHHHHHHHHHHHHhcCCccc-------------------hhhhhcCC
Confidence 999999999999998765432 2223578999999999999999999864 25889999
Q ss_pred CcceeEEEEccCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhHHhhcCCCCCCCCchHHHHHHHHH
Q psy4522 478 NRPTNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQDKNPVTSHDASTNGLINFLK 557 (560)
Q Consensus 478 ~rPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~l~gINpFDQpGVE~gK~~a~~i~~~~~~~~~~~~~d~st~~li~~~~ 557 (560)
||||++|.++++||++||+|||||||+|+++|+|||||||||||||+||++|++|++++.++. ..+|+||++||+++.
T Consensus 455 nrPs~~i~l~~l~p~~lG~LialyEh~v~v~G~lwgIN~FDQ~GVElGK~la~~il~~~~~~~--~~~d~st~~li~~~~ 532 (533)
T PRK14095 455 NRPSSLLVAKQLTPYTLGALLAHYENKVMFQGFCWNINSFDQEGVQLGKVLANQILGIMKGEA--PGEFPEADGLLKLFN 532 (533)
T ss_pred CCceEEEEeCCCCHHHHHHHHHHHHHHHHHheeecCcCCCCchHHHHHHHHHHHHHHHhcCCC--CCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999997654 569999999999874
No 6
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=100.00 E-value=7.4e-137 Score=1116.51 Aligned_cols=485 Identities=52% Similarity=0.831 Sum_probs=442.1
Q ss_pred eccCCCCCHHHHHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHHHHHHHHcCCCCCcccCCCcchhhHHHHHHHHHHHH
Q psy4522 62 DFSKNRIDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRNLSNRPILVDCQDVTPAVNAVKQHMKEFS 141 (560)
Q Consensus 62 D~Skq~i~~~~l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~lH~aLR~~~~~~~~~~g~~~~~~v~~~~~~i~~fa 141 (560)
|||||+||++++++|++||++++|+++|++||+|++||.||+|+|+|+|||++.+.++.++|+++++|++..+++|++|+
T Consensus 1 d~sk~~~~~~~~~~l~~la~~~~l~~~~~~~~~g~~iN~tE~r~vlH~alr~~~~~~~~~~g~~~~~~v~~~~~~~~~~~ 80 (486)
T PF00342_consen 1 DYSKQRIDEETLDLLIELAEEAGLPEKIEAMFSGEKINITENRAVLHTALRAPSGQSLLVDGKDVLGWVDAPLQRMKEFA 80 (486)
T ss_dssp EETTSS--HHHHHHHHHHHHHTTHHHHHHHHHTTHHHBTTTTB--HHHHHTCTTTT-HEETTEESHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcChHHHHHHHhCcchhhccccHhHHHHHHHcCCCCCccCCCchhHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCC-CeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCC
Q psy4522 142 EQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVG-PRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTF 220 (560)
Q Consensus 142 ~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~-~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSg 220 (560)
++||++.|++++|++|++||+||||||+|||+|+++||.++... +++||++|+||.++.++++.|||++|+||||||||
T Consensus 81 ~~i~~~~~~~~~~~~~~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~~~f~~n~Dp~~l~~~l~~ld~~~Tl~iViSKSg 160 (486)
T PF00342_consen 81 ERIRSGAWKGRTGKPITDVVVIGIGGSSLGPRALYEALKPYFSNPPRLHFLDNVDPADLARLLERLDPETTLFIVISKSG 160 (486)
T ss_dssp HHHHTTHSBHTTSSB-SEEEEE--GGGTHHHHHHHHHTGGGTTSSCEEEEESSSSHHHHHHHHTTSTGGGEEEEEEESSS
T ss_pred HHHHHHHHccccCCceeEEEEEecchhhHHHHHHHHHhhhhcccceEEEEeccCChHHHHHHHhcCCCccEEEEEecCCC
Confidence 99999999999999999999999999999999999999987554 89999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCchhHHhcccccCCeeeccCCCCCCcccchhhhHHHHHhhCchhH
Q psy4522 221 TTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNIGYNNF 300 (560)
Q Consensus 221 tT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~~~~~~gi~~~~~f~~~d~VGGRfSv~SavGL~~a~~~G~d~~ 300 (560)
+|+||+.|++.+++||.+++++++++++||||||++++.+.+++++++++|+||||||||||+||+||||+|++.|++.|
T Consensus 161 tT~ET~~n~~~~~~~l~~~~~~~~~~~~h~vavT~~~~~~~~~~~~~~~~f~~~d~VGGRfSv~SaVGlp~ala~G~~~~ 240 (486)
T PF00342_consen 161 TTIETLANFRIAREWLEKKGGDKEEAAKHFVAVTDNGSGALKFGIDEENIFPIPDWVGGRFSVLSAVGLPLALAGGFIDF 240 (486)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHSGGGGGGTEEEEESSHHHHHHHTHHGGGEEE--TTS-GGGTTTSGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCccccccceEEEeCCCchHHHHHHHHHhcceeccccccccccCCCCCchHHHHHcChhhH
Confidence 99999999999999999998865668999999999999999999999999999999999999999999888888887569
Q ss_pred HHHHhHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCceEEEEeChhhHHhHHHHHhHhhhHhcCcccccCCeeeec
Q psy4522 301 ERLLAGAHFMDNHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMESNGKYVTRQGTVVNY 380 (560)
Q Consensus 301 ~~lL~GA~~md~~f~~~~~~~N~p~~lAll~~~~~~~~g~~~~~l~~Y~~~L~~l~~w~qQL~~ES~GK~~~~~G~~~~~ 380 (560)
++||+||++||+||+++|+++|+|++||++++|+.+++|+++++++||+++|+.|++||||||||||||+++.+|+++.+
T Consensus 241 ~~lL~GA~~md~~f~~~~~~~N~p~~~All~~~~~~~~g~~~~~i~~Y~~~L~~l~~w~qQL~mESlGK~~~~~G~~~~~ 320 (486)
T PF00342_consen 241 EELLAGARAMDEHFRSAPLEKNPPVLYALLRVWNSNFLGYNIEVILPYSPRLRRLPAWLQQLWMESLGKSVDRDGEPVDY 320 (486)
T ss_dssp HHHHHHHHHHHHHHHHS-GGG-HHHHHHHHHHHHHHTST-SEEEEEESSGGGTTHHHHHHHHHHHHHSESBTTTSSBESS
T ss_pred HHHHHHHHHHHHHhcCCChhhCHHHHHHHHHHHHHhhhccchhccccCChHHHHHHHHHHHhcccccchhhcccCceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceecCCCCCCcchhHHHHHHhcCCcccceeEeccCCCCCCCcchhhHHHhhhhhhhHHHHhCCCCHHHHHHHHHHcC
Q psy4522 381 STGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNPIENNLHHKILLSNFLAQTEALAKGKSPAEAEAELKATG 460 (560)
Q Consensus 381 ~tgpiv~g~~Gt~dqHS~~Qll~qG~~~~~~dfi~~~~~~~~~~~~~~~~~l~~n~laq~~al~~Gk~~~~~~~~~~~~g 460 (560)
.|||++||++||+|||||+||||||++++|+|||.+.+.... +..+|+.+.+||++|.++|+.||+.++++++....
T Consensus 321 ~t~pi~~G~~Gt~dqHS~~Qll~qG~~~~~~~fi~~~~~~~~--~~~~~~~l~~n~~~q~~~L~~Gk~~~~~~~~~~~~- 397 (486)
T PF00342_consen 321 GTGPIVWGGVGTNDQHSFFQLLHQGGRDKPVDFILFVKNPHD--DLDIHDILLANCLAQLDALAFGKTLEELNKEAFAA- 397 (486)
T ss_dssp EESEEEEEEETTGGGGTSHHHHHHSSSSCEEEEEEEECCSSS--GCHHHHHHHHHHHHHHHHHHHTBBHHHHHHHHHHT-
T ss_pred cCCccccCCCCCccccccceeecccCceEEEEEEEEcccccc--ccccchhhhhhhhHHHHHHHCCCCHHHHHhhhccc-
Confidence 999999999999999999999999999999999988765432 24678889999999999999999999998765332
Q ss_pred CChhhhhhhcCCcccCCCcceeEEEEccCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhHHhhcCC
Q psy4522 461 MPAETVKKILPHKVFQGNRPTNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQDKN 540 (560)
Q Consensus 461 ~~~~~~~~l~~~~~~~g~rPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~l~gINpFDQpGVE~gK~~a~~i~~~~~~~~ 540 (560)
..+++.+|+.++|||||++|+++++||++||+|||||||+|+++|+|||||||||||||+||++|++|+..+..+.
T Consensus 398 ----~~~~l~~~~~~~Gn~Ps~~I~l~~l~~~~lG~Lia~yE~~~~v~g~l~~INpFDQpGVElgK~~a~~il~~~~~~~ 473 (486)
T PF00342_consen 398 ----TAETLAAHKVFPGNRPSTTILLDELDPYSLGALIAFYEHKTFVQGYLWGINPFDQPGVELGKKLAKKILGKLEGEE 473 (486)
T ss_dssp ----HHHHHHHGHHBTTT-EEEEEEESESSHHHHHHHHHHHHHHHHHHHHHHTS-TT--GGGHHHHHHHHHHHHHHSSSS
T ss_pred ----cHHHHHHhhhhcCCcceeeeecccCCchHHHHHHHHHHHHHHHhhhhcCcCCCCCccHHHHHHHHHHHHhhccCCC
Confidence 3567889999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCCCCchHHHHH
Q psy4522 541 PVTSHDASTNGLI 553 (560)
Q Consensus 541 ~~~~~d~st~~li 553 (560)
...+||+||++||
T Consensus 474 ~~~~~d~st~~l~ 486 (486)
T PF00342_consen 474 QVSGHDSSTAALI 486 (486)
T ss_dssp TCCSSHHHHHHHH
T ss_pred CCCCCChhhhhhC
Confidence 6778999999997
No 7
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=1.1e-121 Score=996.22 Aligned_cols=451 Identities=31% Similarity=0.437 Sum_probs=406.4
Q ss_pred ccccceEEecCCCCCCCeEEeccCCCCCHHHHHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHHHHHHHHcCCCCCccc
Q psy4522 42 RFEKFSLTIPTPGDEGNILIDFSKNRIDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRNLSNRPILV 121 (560)
Q Consensus 42 R~~~~s~~~~~~~~~~gl~lD~Skq~i~~~~l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~lH~aLR~~~~~~~~~ 121 (560)
|++.+....+ +.||++|||||++|+++++.|.+++++ +.+++++||+|+++|.||+|+|+|++||.|...+
T Consensus 9 r~~~~~~~~~----~~g~~lD~sr~~~~~~~l~~l~~~a~~--a~~~~~~l~~G~~~N~tE~R~v~H~~LR~p~~~~--- 79 (528)
T PRK14096 9 RYCDWLYYHP----ELGLWLDISRMNFDDAFLESLEPKFQK--AFAAMAALEAGAIANPDEGRMVGHYWLRNPELAP--- 79 (528)
T ss_pred HHHhheeecC----CCCEEEEccCCCCCHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCchhhhHhhcCCccCC---
Confidence 5555555442 378999999999999999999999975 4799999999999999999999999999987754
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHH
Q psy4522 122 DCQDVTPAVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAE 201 (560)
Q Consensus 122 ~g~~~~~~v~~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~ 201 (560)
|.++.+.+++++++|++|+++||+|+|+|++|++|++||+||||||+|||+|+++||.+....+++||++|+||..+.+
T Consensus 80 -~~~~~~~i~~~l~~i~~fa~~i~~G~~~~~~g~~~~~vV~IGIGGS~LGp~~v~~AL~~~~~~~~~~f~dN~Dp~~~~~ 158 (528)
T PRK14096 80 -TPEIRAEITETLAQIEAFAAKVHSGTIKPPNGEKFTDVLWIGIGGSALGPQFVAEALQPNSDGLNIHFIDNTDPDGIDR 158 (528)
T ss_pred -CcchhHHHHHHHHHHHHHHHHHHcCCccCCCCCCCCeEEEECCCcchHHHHHHHHHHhhcCCCCcEEEEcCCCHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999998754457899999999999999
Q ss_pred HHhhcC--CCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCchhHHhcccccC--CeeeccCCC
Q psy4522 202 VLKKVN--PETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKVAEFGIDTA--NMFGFWDWV 277 (560)
Q Consensus 202 ~l~~l~--~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~~~~~~gi~~~--~~f~~~d~V 277 (560)
+++.|+ |++|||||+||||+|.||++|++.+++||++++. ++++|+||||++++++++++++++ ++|+|||||
T Consensus 159 ~l~~l~~~~~~TLviViSKSGtT~ET~~n~~~~~~~l~~~G~---~~~~h~VAVT~~~s~L~~~A~~~g~~~~F~~~d~V 235 (528)
T PRK14096 159 VLAELGDRLATTLVVVISKSGGTPETRNGMLEAKAAYEAAGL---DFASHAVAITMKGSKLDQLAQSEGWLARFPMWDWV 235 (528)
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHHHhhcc---cccceEEEEECCCcHHhhhccccCceeEeeCCCCC
Confidence 999997 9999999999999999999999999999976542 357899999999999999999775 799999999
Q ss_pred CCCcccchhhhHHHHHhhCchhHHHHHhHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCceEEEEeChhhHHhHHH
Q psy4522 278 GGRYSLWSAIGLSIALNIGYNNFERLLAGAHFMDNHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAA 357 (560)
Q Consensus 278 GGRfSv~SavGL~~a~~~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~~lAll~~~~~~~~g~~~~~l~~Y~~~L~~l~~ 357 (560)
|||||+||+|||+|++++|+| |++||+||++||+||+++|+++|+|+++|++.+|+.+++|+++++++||+++|+.|+.
T Consensus 236 GGRfSv~SaVGLlP~al~G~d-i~~lL~GA~~md~~~~~~~~~~N~~~llal~~~~~~~~~g~~~~~vlpY~~~L~~f~~ 314 (528)
T PRK14096 236 GGRTSETSAVGLLPAALQGID-IRAFLAGAKQMDEATRVPDLKNNPAALLALAWYYAGDGKGKKDMVVLPYKDRLLLFSR 314 (528)
T ss_pred CCcccccchhhHHHHHHhCcC-HHHHHHHHHHHHHHhhcCCcccCHHHHHHHHHHHHHhcCCCCeEEEEECcHHHHHHHH
Confidence 999999999999999999999 8999999999999999999999999999999999989999999999999999999999
Q ss_pred HHhHhhhHhcCcccccCCeeeeccccceecCCCCCCcchhHHHHHHhcCCcccceeEeccCCCCCCCcchhhHHHhhhhh
Q psy4522 358 YFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNPIENNLHHKILLSNFL 437 (560)
Q Consensus 358 w~qQL~~ES~GK~~~~~G~~~~~~tgpiv~g~~Gt~dqHS~~Qll~qG~~~~~~dfi~~~~~~~~~~~~~~~~~l~~n~l 437 (560)
|+|||+||||||+++++|+++. +||+|||+.||+|||||+||||||++++|+|||.+.++.++..
T Consensus 315 wlqQL~mES~GK~~~~~G~~v~--~G~~v~g~~Gt~dQHS~~Qll~qG~~~~~~tFI~v~~~~~~~~------------- 379 (528)
T PRK14096 315 YLQQLVMESLGKELDLDGNVVH--QGIAVYGNKGSTDQHAYVQQLRDGVDNFFVTFIEVLEDRQGSS------------- 379 (528)
T ss_pred HHHHHhhhccCCccccCCcCcc--ccCeEecCCCCCchHHHHHHHHccCCCeeEEEEeEcCCCCccc-------------
Confidence 9999999999999999999984 7999999999999999999999999999999998775432110
Q ss_pred hhHHHHhCCCCHHHHHHHHHHcCCChhhhhhhcCCcccCCCcceeEEEEccCChhhHHHHHHHHHHHHHHHHHHhcCCCC
Q psy4522 438 AQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQGNRPTNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSY 517 (560)
Q Consensus 438 aq~~al~~Gk~~~~~~~~~~~~g~~~~~~~~l~~~~~~~g~rPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~l~gINpF 517 (560)
.+++.|++..++...+ ..|. .+++++|||||++|+++++||++||+|||||||+|+++|+|||||||
T Consensus 380 ---~~~~~g~~~~~~l~~~-~~gt---------~~al~~g~rPs~~I~l~~l~p~~lGaLialyE~~v~~~g~l~~IN~F 446 (528)
T PRK14096 380 ---IEVEPGVTSGDYLSGF-LQGT---------RQALYENGRQSITITIPEVNPRTLGALIALFERAVGLYASLVNINAY 446 (528)
T ss_pred ---hhhccCCCHHHHHHHH-HhCc---------HhhhhcCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHhhhccCcCCC
Confidence 0123356655543221 1121 14567999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHhH
Q psy4522 518 DQWGVELGKQLAKAIEP 534 (560)
Q Consensus 518 DQpGVE~gK~~a~~i~~ 534 (560)
||||||+||++|++|++
T Consensus 447 DQpGVE~GK~~a~~il~ 463 (528)
T PRK14096 447 HQPGVEAGKKAAAAILD 463 (528)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 99999999999999987
No 8
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.5e-113 Score=912.55 Aligned_cols=442 Identities=56% Similarity=0.873 Sum_probs=417.0
Q ss_pred CeEEeccCCCCCHHHHHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHHHHHHHHcCCCCCcccCCCcchhhHHHHHHHH
Q psy4522 58 NILIDFSKNRIDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRNLSNRPILVDCQDVTPAVNAVKQHM 137 (560)
Q Consensus 58 gl~lD~Skq~i~~~~l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~lH~aLR~~~~~~~~~~g~~~~~~v~~~~~~i 137 (560)
+|++||||++++++++..|.+|++++++.+++++||+|+.+| ||+|++||+++| ++++.+.+++|
T Consensus 3 ~l~~d~sk~~~~~~~~~~l~~l~~~~~~~~~~~~~~~g~~~n-~e~r~~lh~~~r--------------~~e~~~vl~~~ 67 (446)
T COG0166 3 GLLLDYSKNLLNDETLELLLELADEADLAEKIDAMFKGAKIN-TEGRAVLHTALR--------------MPEVDEVLKRM 67 (446)
T ss_pred cEEEehhhccCchHHHHHHHHHHHHHhHHHHHHHhhcCCCCC-cccchhhhhhhh--------------hHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999 999999999999 46889999999
Q ss_pred HHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCC-CCeEEEEecCChhHHHHHHhhcCCCCeEEEEE
Q psy4522 138 KEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAV-GPRVHFVSNIDGTHLAEVLKKVNPETVLFIVA 216 (560)
Q Consensus 138 ~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~-~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~ivi 216 (560)
++|++++|+| +|++||+||||||+|||+|++++|.++.. ++++||++|+||+++.++++.++|++|+|+|+
T Consensus 68 ~~f~~~~~~g--------~~~~IV~IGIGGS~LG~~~~~~aL~~~~~~~~~~~Fv~nid~~~~~~~l~~i~~~~tl~ivi 139 (446)
T COG0166 68 KAFADDVRSG--------KITDIVNIGIGGSDLGPRAVTEALRPYAPNGPRVHFVSNVDPTYLAEVLKKLDPETTLFIVI 139 (446)
T ss_pred HHHHhhcccC--------ccceEEEeCCchhHHHHHHHHHHhhhhccCCCceEEecCCCchhhhHHHhccCcccEEEEEE
Confidence 9999999987 59999999999999999999999999865 58999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCchhHH-hcccccCCeeeccCCCCCCcccchhhhHHHHHhh
Q psy4522 217 SKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKVA-EFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNI 295 (560)
Q Consensus 217 SKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~~~~-~~gi~~~~~f~~~d~VGGRfSv~SavGL~~a~~~ 295 (560)
||||||+||+.|++.+++|+.++ ++...+|||+++++.+++. .+++...++|.||||||||||+||+||++++++.
T Consensus 140 SKSGtT~Et~~n~~~~r~~~~~~---~~~~~~~~v~~~~~~~~l~~~~~~~~~~~f~ipd~VGGRfS~~SaVG~l~~a~~ 216 (446)
T COG0166 140 SKSGTTLETLTNFRLARKWLEKK---EEAAKKHFVATSTNGGALAVLAGENGLETFEIPDWVGGRYSVLSAVGLLPLALG 216 (446)
T ss_pred eCCCCcHHHHHHHHHHHHHHHhh---hhhhhcEEEEEcCCchHHHHhcCCCceeEEECCCCCCCccchhHHHHHHHHHHh
Confidence 99999999999999999999877 3456899999999999887 8888888999999999999999999998888888
Q ss_pred CchhHHHHHhHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCceEEEEeChhhHHhHHHHHhHhhhHhcCcccccCC
Q psy4522 296 GYNNFERLLAGAHFMDNHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMESNGKYVTRQG 375 (560)
Q Consensus 296 G~d~~~~lL~GA~~md~~f~~~~~~~N~p~~lAll~~~~~~~~g~~~~~l~~Y~~~L~~l~~w~qQL~~ES~GK~~~~~G 375 (560)
|.| |++||+||++||+||+++++++|+|+++|++++||.+++|+.+++++||+++|++|++|+|||+|||+||+++++|
T Consensus 217 ~~~-~~~lL~Ga~~~d~~~~~~~l~~N~~~l~ali~~~~~~~~G~~~~~i~~Y~~~l~~f~~~~qQL~~ES~GK~~~~~~ 295 (446)
T COG0166 217 GID-FKELLEGAAAADEHFRTTPLEENLAVLYALIGIWYYNFKGAEIEVILPYDPYLEYFPAWLQQLNMESNGKSVKGIG 295 (446)
T ss_pred ccc-HHHHHHHHHHHHHHhccCChhhcHHHHHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHHhccCCCccCcC
Confidence 888 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccceecCCCCCCcchhHHHHHHhcCCcccceeEeccCCCCCCCcchhhHHHhhhhhhhHHHHhCCCCHHHHHHH
Q psy4522 376 TVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNPIENNLHHKILLSNFLAQTEALAKGKSPAEAEAE 455 (560)
Q Consensus 376 ~~~~~~tgpiv~g~~Gt~dqHS~~Qll~qG~~~~~~dfi~~~~~~~~~~~~~~~~~l~~n~laq~~al~~Gk~~~~~~~~ 455 (560)
.++.+.|+|++||.+|+++||+|||++|||++.+|++||.+.+...+.. .+|+.|.+|+++|..+++.|++..+.
T Consensus 296 ~~~~~~t~~~~~g~~g~~gqh~ffql~~qgt~~~p~~~I~~~~~~~~~~--~~~~~L~~~~~aq~~~~a~~~t~~~~--- 370 (446)
T COG0166 296 PEVNFHTDPISWGEPGTNGQHAFFQLLHQGTDLKPADFIEIEESIEDLD--GHHDKLLSNFLAQTEALAFGKTLLAH--- 370 (446)
T ss_pred CccccCCCceeeccccccCceeEEEEEEecccccchhhccccccccCcc--chHHHHHHhHHHHHHHHHhhhhhhHh---
Confidence 9999999999999999999999999999999999999999987765542 37899999999999999999877542
Q ss_pred HHHcCCChhhhhhhcCCcccCCCcceeEEEEccCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhHH
Q psy4522 456 LKATGMPAETVKKILPHKVFQGNRPTNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPE 535 (560)
Q Consensus 456 ~~~~g~~~~~~~~l~~~~~~~g~rPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~l~gINpFDQpGVE~gK~~a~~i~~~ 535 (560)
. .||||++.|+++++||+++|+|+++|||+|+++|++||||||||||||+||++|++|+..
T Consensus 371 -----------------~--~gn~P~~~i~~~~l~p~~~G~l~a~yE~~~~~~G~l~~in~FdQ~GVElgK~~~~~ll~~ 431 (446)
T COG0166 371 -----------------T--AGNRPSNLILLRELTPYTLGALIALYEHKTFVQGVLWGINSFDQPGVELGKKLAFALLGK 431 (446)
T ss_pred -----------------h--cCCCCceEEEecCCChhhhHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhh
Confidence 1 389999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCchHH
Q psy4522 536 LQDKNPVTSHDASTN 550 (560)
Q Consensus 536 ~~~~~~~~~~d~st~ 550 (560)
+..+.....+|+||+
T Consensus 432 ~~~~~~~~~~~~~~~ 446 (446)
T COG0166 432 LGGELSAELHDSSTE 446 (446)
T ss_pred ccCCccccccccccC
Confidence 987755667899883
No 9
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=3.7e-95 Score=783.00 Aligned_cols=365 Identities=23% Similarity=0.284 Sum_probs=309.7
Q ss_pred HHHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCC--C-------CCCeEEEE-ecCChhHHHH
Q psy4522 132 AVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPY--A-------VGPRVHFV-SNIDGTHLAE 201 (560)
Q Consensus 132 ~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~--~-------~~~~~~f~-~n~Dp~~~~~ 201 (560)
..+++|++|++++|++ +++||+||||||+|||+|+++||.+. . .+++++|+ +|+||.++.+
T Consensus 57 ~~~~~i~~~~~~~~~~---------~~~vV~IGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~~~f~~dn~Dp~~~~~ 127 (448)
T PRK14097 57 EEFARIKKAAEKIKSD---------SDVLVVIGIGGSYLGARAAIEFLNHSFYNLLPKEQRKAPQIIFAGNSISSTYLAD 127 (448)
T ss_pred HHHHHHHHHHHHHhcC---------CCEEEEEecCcchhhHHHHHHHhhhhhcccccccccCCccEEEecCCCCHHHHHH
Confidence 4788999999999985 69999999999999999999999651 0 14789888 6799999999
Q ss_pred HHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCch-hHHhcccccC-CeeeccCCCCC
Q psy4522 202 VLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAG-KVAEFGIDTA-NMFGFWDWVGG 279 (560)
Q Consensus 202 ~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~-~~~~~gi~~~-~~f~~~d~VGG 279 (560)
+++.+++++|+||||||||||+||++|++.+++||.++++. +...+|+|+||++++ .+..++-... ++|+|||||||
T Consensus 128 ~l~~l~~~~tl~iViSKSGtT~ET~~~~~~~~~~l~~~~g~-~~~~~~~v~iTd~~~~~L~~~a~~~g~~~f~ip~~VGG 206 (448)
T PRK14097 128 LLEYLKDKDFSINVISKSGTTTEPAIAFRIFKELLEKKYGK-EEAKKRIYATTDKAKGALKTLADAEGYETFVIPDDVGG 206 (448)
T ss_pred HHhhCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCc-ccccceEEEEeCCCchHhhccchhcCcCEEeCCCCCCc
Confidence 99999999999999999999999999999999999665442 234678888855444 2433332221 69999999999
Q ss_pred CcccchhhhHHHHHhhCchhHHHHHhHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCceEEEEeChhhHHhHHHHH
Q psy4522 280 RYSLWSAIGLSIALNIGYNNFERLLAGAHFMDNHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYF 359 (560)
Q Consensus 280 RfSv~SavGL~~a~~~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~~lAll~~~~~~~~g~~~~~l~~Y~~~L~~l~~w~ 359 (560)
||||||+|||+|++++|+| |++||+||++||+||+++++++|+|+++|++++|+. ..|+++++++||+++|++|++||
T Consensus 207 RfSvlSavGLlP~al~G~d-i~~lL~GA~~m~~~~~~~~~~~N~a~l~A~~~~~~~-~~g~~~~vl~~Y~~~L~~f~~w~ 284 (448)
T PRK14097 207 RFSVLTAVGLLPIAVAGID-IDALMKGAADARKDYSSSDLSENPAYQYAAVRNILY-RKGYTTEILVNYEPSLQYFSEWW 284 (448)
T ss_pred ccccccHhHHHHHHHhhhh-HHHHHHHHHHHHHHhhcCChhhCHHHHHHHHHHHHH-hCCCCeEEEEEChHHHHHHHHHH
Confidence 9999999999999999999 899999999999999999999999999999988887 67999999999999999999999
Q ss_pred hHhhhHhcCcccccCCeeeeccccceecCCCCCCcchhHHHHHHhcCCcccceeEeccCCCCCC-CcchhhHHHhhhhhh
Q psy4522 360 QQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNPI-ENNLHHKILLSNFLA 438 (560)
Q Consensus 360 qQL~~ES~GK~~~~~G~~~~~~tgpiv~g~~Gt~dqHS~~Qll~qG~~~~~~dfi~~~~~~~~~-~~~~~~~~l~~n~la 438 (560)
|||||||+||+ |+ |.+|.+.+||+|||||+||+|||+++++++||.+.++.+++ .+..++.....||+
T Consensus 285 ~QL~aESlGK~----g~------G~~P~~~igt~dqHS~~Ql~~~G~~~~~~t~i~~~~~~~~~~i~~~~~~~~~l~~l- 353 (448)
T PRK14097 285 KQLFGESEGKD----QK------GIFPASANFSTDLHSLGQYIQEGRRNLFETVIKVEKPRKDLTIPEDEEDLDGLNYL- 353 (448)
T ss_pred HHHhccccccC----CC------CcccccCccCCCcchhhhHHHhCCCcEEEEEEeecCCCCcCCCCcccccchhhhhh-
Confidence 99999999996 33 44566788999999999999999999999999877543322 11122222223555
Q ss_pred hHHHHhCCCCHHHHHHHHHHcCCChhhhhhhcCCcccCCCcceeEEEEccCChhhHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy4522 439 QTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQGNRPTNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYD 518 (560)
Q Consensus 439 q~~al~~Gk~~~~~~~~~~~~g~~~~~~~~l~~~~~~~g~rPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~l~gINpFD 518 (560)
.|++.+++++.. ..+++.+|+ ++||||++|.++++||++||+||+||||+|+++|+||||||||
T Consensus 354 ------~g~~~~~l~~~~--------~~at~~al~--~~~~P~~~I~l~~l~~~~lG~L~~~yE~~t~~~G~l~gINpFD 417 (448)
T PRK14097 354 ------AGKTVDFVNKKA--------FEGTLLAHT--DGGVPNIVVNIPELDEYTFGYLVYFFEKACAISGYLLGVNPFD 417 (448)
T ss_pred ------cCCCHHHHHHhh--------hhhhHhhHh--hCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCC
Confidence 499999886542 223556676 8999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHhHH
Q psy4522 519 QWGVELGKQLAKAIEPE 535 (560)
Q Consensus 519 QpGVE~gK~~a~~i~~~ 535 (560)
|||||+||+++++++..
T Consensus 418 QpGVE~gK~~~~~~l~~ 434 (448)
T PRK14097 418 QPGVEAYKKNMFALLGK 434 (448)
T ss_pred CccHHHHHHHHHHHhCC
Confidence 99999999999998864
No 10
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=8.1e-94 Score=770.06 Aligned_cols=343 Identities=30% Similarity=0.417 Sum_probs=297.4
Q ss_pred cCeEEEEcccCCchhHHHHHHHhcCCC---------CCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHH
Q psy4522 157 ITDVVNIGIGGSDLGPLMVTEALKPYA---------VGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETIT 227 (560)
Q Consensus 157 i~~vV~iGiGGS~LGp~~~~~al~~~~---------~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~ 227 (560)
+++||+||||||+|||+|++++|.+.. ..++++|++|+||..+.++++.++|++|+||||||||||+||++
T Consensus 71 ~~~vVviGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~l~~~~n~dp~~~~~~l~~l~~~~Tl~iviSKSGtT~ET~~ 150 (446)
T PRK00973 71 FDNVVVLGIGGSALGNLALHYALNPLNWNELSKEERNGPRVFVLDNVDPEKTASILDVIDLEKTLFNVISKSGNTAETLA 150 (446)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHhhhccccccccccCCceEEEeCCCCHHHHHHHHHhCCcccEEEEEEeCCCCCHHHHH
Confidence 899999999999999999999997631 13679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcccccCeEEEEecCch-----hHHhcccccCCeeeccCCCCCCcccchhhhHHHHHhhCchhHHH
Q psy4522 228 NATSAKNWFLQHSKDPASVAKHFVALSTNAG-----KVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNIGYNNFER 302 (560)
Q Consensus 228 n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~-----~~~~~gi~~~~~f~~~d~VGGRfSv~SavGL~~a~~~G~d~~~~ 302 (560)
|++.+++|| ++.+. +..+|+|+||++.+ .++++|++ +|++|+||||||||||+|||+|++++|+| |++
T Consensus 151 ~f~~~~~~l-~~~g~--~~~~~~vaiTd~~~g~L~~~A~~~g~~---~f~ip~~VGGRfSvlSaVGL~p~a~~G~d-i~~ 223 (446)
T PRK00973 151 NYLIIRGIL-EKLGL--DPKKHLVFTTDPEKGKLKKIAEKEGYR---TLEIPENVGGRFSVLTPVGLAPAAALGID-IEE 223 (446)
T ss_pred HHHHHHHHH-HhcCc--cccceEEEEcCCCccchHHHHHHcCCc---EEeeCCCCCcceeeecHHHHHHHHHhCcc-HHH
Confidence 999999999 44442 35779999988532 24557775 89999999999999999999999999999 899
Q ss_pred HHhHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhccCCCceEEEEeChhhHHhHHHHHhHhhhHhcCcccccCCeeeeccc
Q psy4522 303 LLAGAHFMDNHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMESNGKYVTRQGTVVNYST 382 (560)
Q Consensus 303 lL~GA~~md~~f~~~~~~~N~p~~lAll~~~~~~~~g~~~~~l~~Y~~~L~~l~~w~qQL~~ES~GK~~~~~G~~~~~~t 382 (560)
||+||++||+||+++++++|+|+++|++.+|+.+ .|+++++++||+++|++|++|||||||||+||+ .+
T Consensus 224 lL~GA~~m~~~~~~~~~~~N~a~~~a~~~~~~~~-~g~~~~vl~~Y~~~L~~f~~w~~QL~~ES~GK~----------~~ 292 (446)
T PRK00973 224 LLEGAKEMDKICEKEDIFKNPALLNALIHYLYYN-RGKNISVMMPYSERLKYFGDWYRQLWAESLGKK----------GV 292 (446)
T ss_pred HHHHHHHHHHHHhcCChhhCHHHHHHHHHHHHHh-CCCCeEEEEEcHHHHHHHHHHHHHHHHHhcCCC----------CC
Confidence 9999999999999999999999999999888766 699999999999999999999999999999996 23
Q ss_pred cceecCCCCCCcchhHHHHHHhcCCcccceeEeccCCCCCC-CcchhhHHHhhhhhhhHHHHhCCCCHHHHHH-HHHHcC
Q psy4522 383 GPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNPI-ENNLHHKILLSNFLAQTEALAKGKSPAEAEA-ELKATG 460 (560)
Q Consensus 383 gpiv~g~~Gt~dqHS~~Qll~qG~~~~~~dfi~~~~~~~~~-~~~~~~~~l~~n~laq~~al~~Gk~~~~~~~-~~~~~g 460 (560)
|++|||++||+|||||+||+|||+++++++||.+.+..+++ .+..++.....|| +.||+.++++. ++.+
T Consensus 293 G~~P~~~~Gt~dqHS~~Ql~~qG~~~~~~tfi~v~~~~~~~~i~~~~~~~~~l~~-------l~g~t~~~l~~~~~~a-- 363 (446)
T PRK00973 293 GQTPVKALGATDQHSQLQLYMEGPKDKIITFLKVEKYRRDVEIPYEYEDIEELSY-------LGGHKLSELINSEQKG-- 363 (446)
T ss_pred CCceecCCCCccHHHHHHHHHhCCCCeEEEEEEECCCCCccCCCcchhhhhHHhh-------hcCCCHHHHHHHHhhh--
Confidence 88999999999999999999999999999999877643322 1122222223344 44999999854 3322
Q ss_pred CChhhhhhhcCCcccCCCcceeEEEEccCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhHH
Q psy4522 461 MPAETVKKILPHKVFQGNRPTNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPE 535 (560)
Q Consensus 461 ~~~~~~~~l~~~~~~~g~rPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~l~gINpFDQpGVE~gK~~a~~i~~~ 535 (560)
+..++ .++|||+++|.++++||++||+||+||||+|+++|+|||||||||||||+||++|++|+..
T Consensus 364 -------t~~al--~~~~~P~~~I~l~~l~~~~lG~L~~~~E~~t~~~G~llgINpFDQPGVE~gK~~~~~~l~~ 429 (446)
T PRK00973 364 -------TEIAL--TENGRPNVKITLDELNEYTVGQLFYMYEMQTAFMGELLNINAFDQPGVELGKKITYALLGR 429 (446)
T ss_pred -------hHHHH--hhCCCceEEEEeCCCCHHHHHHHHHHHHHHHHHHhhhcCcCCCCCccHHHHHHHHHHHhcC
Confidence 11122 3689999999999999999999999999999999999999999999999999999999865
No 11
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=100.00 E-value=7.2e-91 Score=742.86 Aligned_cols=391 Identities=27% Similarity=0.321 Sum_probs=313.5
Q ss_pred CcchHHHHHHHHHcCCCCCcccCCCcchhhHH---HHHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHH
Q psy4522 100 FTEDRAVLHVALRNLSNRPILVDCQDVTPAVN---AVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVT 176 (560)
Q Consensus 100 ~te~r~~lH~aLR~~~~~~~~~~g~~~~~~v~---~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~ 176 (560)
..+.+...|..+++..... . ++|++ .....++++.+.+.+. .+|++||+||||||+|||++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~-----~--lg~~~~p~~~~~~i~e~~~~i~~~-------~~~~~VV~iGIGGS~LG~~~l~ 77 (410)
T PRK03868 12 DIKTISSYFERINKEKESG-----E--IGYYHLPDQSTSLIEESLKFVKDK-------ESIKNIVVIGIGGSSLGVKAIY 77 (410)
T ss_pred chhHHHHHHHHHHhcccCC-----C--CCcccchhhhhhhHHHHHHHHHhh-------CCCCEEEEEecChHHHHHHHHH
Confidence 3456677788888654321 1 33322 1222244555445321 0389999999999999999999
Q ss_pred HHhcCCCC-CCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEec
Q psy4522 177 EALKPYAV-GPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALST 255 (560)
Q Consensus 177 ~al~~~~~-~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt 255 (560)
+++.++.. .++++|++|+||.++.++++.+++++|+|||+||||+|.||++|++.+++|+... . ..++|+|+||+
T Consensus 78 ~al~~~~~~~~~i~f~~n~dp~~~~~~l~~~~~~~TlviviSKSGtT~ETl~~~~~~~~~~~~~-~---~~~~~~v~vTd 153 (410)
T PRK03868 78 SFLKNEKNNKKELHFLENTDPISINKTLSKINLENTLFIVISKSGTTIETISIFKYLLSHFKLD-Q---ELKKNFLFITD 153 (410)
T ss_pred HHHHhhccCCCcEEEEecCCHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhccc-c---ccccEEEEEec
Confidence 99965432 5789999999999999999999999999999999999999999999999988422 1 24779999999
Q ss_pred CchhHHhcccccC-CeeeccCCCCCCcccchhhhHHHHHhhCchhHHHHHhHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q psy4522 256 NAGKVAEFGIDTA-NMFGFWDWVGGRYSLWSAIGLSIALNIGYNNFERLLAGAHFMDNHFQNTPINKNAPVILALLGVWY 334 (560)
Q Consensus 256 ~~~~~~~~gi~~~-~~f~~~d~VGGRfSv~SavGL~~a~~~G~d~~~~lL~GA~~md~~f~~~~~~~N~p~~lAll~~~~ 334 (560)
+++++++++.+.+ ++|++|+||||||||||+|||+|++++|+| +++||+||++||+||..++++ + +++++.+|+
T Consensus 154 ~~s~L~~~a~~~g~~~f~ip~~VGGRfSvlSavGLlP~a~~G~d-i~~lL~GA~~m~~~~~~~~~~---~-~~~~~~~~~ 228 (410)
T PRK03868 154 PDSKLEQFAKENNIKCFNIPKNVGGRFSVLSAVGIVPLALCGYD-IKALLEGAKACKDSFFEQKED---H-ILKKAYFYA 228 (410)
T ss_pred CCchHHHhHHhcCCcEEecCCCCCcceeecchhhHHHHHHhCcc-HHHHHHHHHHHHHHhhcCCHH---H-HHHHHHHHH
Confidence 8888999888765 899999999999999999999999999999 699999999999999877654 2 445555677
Q ss_pred hccCCCceEEEEeChhhHHhHHHHHhHhhhHhcCcccccCCeeeeccccceecCCCCCCcchhHHHHHHhcCCcccceeE
Q psy4522 335 GNFFGSETHALLPYDQYLHRFAAYFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFI 414 (560)
Q Consensus 335 ~~~~g~~~~~l~~Y~~~L~~l~~w~qQL~~ES~GK~~~~~G~~~~~~tgpiv~g~~Gt~dqHS~~Qll~qG~~~~~~dfi 414 (560)
.++.|+++++++||+++|++|+.|||||||||+||+.. +|. .+|++|||++||+|||||+||+|||++++|++||
T Consensus 229 ~~~~~~~~~~~~~Y~~~L~~f~~w~~QL~~ES~GK~~~-~~~----~~G~~p~~~~Gt~dqHS~~Ql~~qG~~~~~~tfi 303 (410)
T PRK03868 229 THKNAYNINVLFSYSDALKGFNDWYVQLWGESLGKKQG-YKT----RVGLTPIGLIGSRDQHSFLQLIMEGPRDKTVTFI 303 (410)
T ss_pred HhcCCCCeEEEEeCcHHHHHHHHHHHHHhhhhcccccc-CCC----ceeeEEeccCCCCchhHHHHHHhcCCcCCCeEEE
Confidence 77789999999999999999999999999999999842 332 6899999999999999999999999999999999
Q ss_pred eccCCCCCCCcchhhHHHhhhhhhhHHHHhCCCCHHHHHH-HHHHcCCChhhhhhhcCCcccCCCcceeEEEEccCChhh
Q psy4522 415 APAISQNPIENNLHHKILLSNFLAQTEALAKGKSPAEAEA-ELKATGMPAETVKKILPHKVFQGNRPTNSIVVKKITPFT 493 (560)
Q Consensus 415 ~~~~~~~~~~~~~~~~~l~~n~laq~~al~~Gk~~~~~~~-~~~~~g~~~~~~~~l~~~~~~~g~rPs~~I~l~~l~~~~ 493 (560)
.+.+..+++.-+.++.....+ .+++.|++.++++. +..+ +..++ .++||||++|.++++||++
T Consensus 304 ~~~~~~~~~~i~~~~~~~~~~-----~~~l~g~~~~~~~~a~~~a---------t~~al--~~~~~P~~~i~l~~l~~~~ 367 (410)
T PRK03868 304 KIKDFQNAPKIPNISLKGLES-----LDFVNGVSFNELINAQCDA---------TMEAL--IAEDIPVDVITLEKLDEFS 367 (410)
T ss_pred EEcCcCCCcCccccccccccc-----hhhhcCCCHHHHHHHHHHH---------HHHHH--HhCCcCeEEEEeCCCCHHH
Confidence 876543322101111111111 23455999988753 3221 11122 4699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHhH
Q psy4522 494 LGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEP 534 (560)
Q Consensus 494 LG~Lia~yE~~t~v~g~l~gINpFDQpGVE~gK~~a~~i~~ 534 (560)
||+||+||||+|+++|+|||||||||||||+||++|++++.
T Consensus 368 lG~L~~~yE~~t~~~g~l~~INpFDQpGVE~gK~~~~~~l~ 408 (410)
T PRK03868 368 IGYLIYYYELLTSAVGKMLGINTYDQPGVEVGKRILKEKLQ 408 (410)
T ss_pred HHHHHHHHHHHHHHHhhhcCcCCCCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999875
No 12
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=100.00 E-value=7.5e-66 Score=588.94 Aligned_cols=333 Identities=24% Similarity=0.290 Sum_probs=264.5
Q ss_pred HHHHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCC
Q psy4522 131 NAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPET 210 (560)
Q Consensus 131 ~~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~ 210 (560)
...+++|++|+++||++ +|++||+||||||+|||+++++++......++++|++|+||..+.++++.+++++
T Consensus 437 ~~~l~~i~~fa~~Ir~~--------~~d~VVviGIGGS~LG~~~l~~~l~~~~~~p~l~~ldn~DP~~v~~~l~~~~~e~ 508 (948)
T PRK09533 437 LAHLAEYEAFAEEVRAE--------GFTDAVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDPAQVRALEAAVDLAR 508 (948)
T ss_pred HHHHHHHHHHHHHHhcC--------CCCEEEEEccChhHHHHHHHHHHHHhcCCCceEEEEeCCChHHHHHHHhhCCccc
Confidence 36889999999999975 4999999999999999999999997544447899999999999999999999999
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCchhHHhccccc--CCeeeccCCCCCCcccchhhh
Q psy4522 211 VLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKVAEFGIDT--ANMFGFWDWVGGRYSLWSAIG 288 (560)
Q Consensus 211 Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~~~~~~gi~~--~~~f~~~d~VGGRfSv~SavG 288 (560)
|+|||+||||+|.||+++++.+++|+.++++. ..++|||+||++++++++++-.. .++|.+|+|||||||+||+||
T Consensus 509 TLvIViSKSGtT~ET~sa~~~~~~~l~~~~g~--~~~~~~VaVTdpgs~L~~~A~~~G~~~vf~~~p~VGGRYSVLSavG 586 (948)
T PRK09533 509 TLFIVSSKSGGTLEPNIFKDYFFARVKEVLGA--KAGRHFVAVTDPGSSLEKVAKEDGFRKIFHGDPDIGGRYSVLSPFG 586 (948)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHhhhhccc--ccCCeEEEEeCCCChHHHHHHHcCCeeEecCCCCCCcchHHhhhhh
Confidence 99999999999999999999999998665442 35789999999877776653222 158999999999999999999
Q ss_pred HHHHHhhCchhHHHHHhHHHHHHHHhc-CCCCCCCHHHHHHH-HHHHHhccCCCceEEEEeChhhHHhHHHHHhHhhhHh
Q psy4522 289 LSIALNIGYNNFERLLAGAHFMDNHFQ-NTPINKNAPVILAL-LGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMES 366 (560)
Q Consensus 289 L~~a~~~G~d~~~~lL~GA~~md~~f~-~~~~~~N~p~~lAl-l~~~~~~~~g~~~~~l~~Y~~~L~~l~~w~qQL~~ES 366 (560)
|+|++++|+| +++||+||++|+++|. +.|+.+|+|+++|+ +++||.+ |+. .++++|+++|+.|+.|++||+|||
T Consensus 587 LvPaa~~GiD-i~~lL~GA~~m~~~~~~~~~~~~Npa~~Laaal~~~~~~--Gr~-~V~i~Ys~~L~~f~~W~~QL~aES 662 (948)
T PRK09533 587 LVPAAAAGID-VRALLDSALAMVRSCGPSVPPADNPGVQLGLALGVAATQ--GRD-KVTIVASPAIADFGAWAEQLIAES 662 (948)
T ss_pred hHHHHHhCch-HHHHHHhHHHHHHHhccCCCcccCHHHHHHHHHHHHHhC--CCc-EEEEEChHHHHHHHHHHHHHHHhh
Confidence 9999999999 7999999999999764 55889999999976 5778755 644 567789999999999999999999
Q ss_pred cCcccccCCeeeeccccceecCCCCCCcchhHHHHHHhcCCcccceeEeccCCCCCCCcchhhHHHhhhhhhhHHHHhCC
Q psy4522 367 NGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNPIENNLHHKILLSNFLAQTEALAKG 446 (560)
Q Consensus 367 ~GK~~~~~G~~~~~~tgpiv~g~~Gt~dqHS~~Qll~qG~~~~~~dfi~~~~~~~~~~~~~~~~~l~~n~laq~~al~~G 446 (560)
+||.. +.+ +|..-..+|.++++ |.+.+.+.| ... . ..|. .+.++.+
T Consensus 663 ~GK~g----~Gl-~Pv~~e~vg~~~~~-----------g~d~~fi~l---~~~--~----~~~~----~~~at~~----- 708 (948)
T PRK09533 663 TGKEG----KGL-IPIDGEPLGDPAVY-----------GNDRVFVYL---RLA--G----EADA----AQDAALA----- 708 (948)
T ss_pred cCCCC----CCc-cCCcceeecccCCC-----------CCCcEEEEE---ecc--c----cchH----HHHHHHH-----
Confidence 99963 211 11110112223321 333322221 111 0 1010 1111111
Q ss_pred CCHHHHHHHHHHcCCChhhhhhhcCCcccCCCcceeEEEEccCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHH
Q psy4522 447 KSPAEAEAELKATGMPAETVKKILPHKVFQGNRPTNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGK 526 (560)
Q Consensus 447 k~~~~~~~~~~~~g~~~~~~~~l~~~~~~~g~rPs~~I~l~~l~~~~LG~Lia~yE~~t~v~g~l~gINpFDQpGVE~gK 526 (560)
.+ ..+|+|+++|.++ |+++||+||++||++|+++|++||||||||||||.||
T Consensus 709 ------------------AL--------~~~g~P~~~I~l~--~~~~LG~lf~l~E~atav~G~LlGINPFDQPgVE~~K 760 (948)
T PRK09533 709 ------------------AL--------EAAGHPVVRIVLD--SAEQLGQEFFRWEMATAVAGAVLGINPFDQPDVEASK 760 (948)
T ss_pred ------------------HH--------HhcCCCeEEEEeC--ChHHHHHHHHHHHHHHHHHHHHhCCCCCCchhHHHHH
Confidence 11 1478999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhhcC
Q psy4522 527 QLAKAIEPELQDK 539 (560)
Q Consensus 527 ~~a~~i~~~~~~~ 539 (560)
++|++++.+++..
T Consensus 761 ~~~~~ll~~~~~~ 773 (948)
T PRK09533 761 IKTRELTAAYEKT 773 (948)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999977544
No 13
>cd05016 SIS_PGI_2 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=100.00 E-value=1.4e-52 Score=395.98 Aligned_cols=160 Identities=62% Similarity=0.976 Sum_probs=145.4
Q ss_pred ceEEEEeChhhHHhHHHHHhHhhhHhcCcccccCCeeeeccccceecCCCCCCcchhHHHHHHhcCCcccceeEeccCCC
Q psy4522 341 ETHALLPYDQYLHRFAAYFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQ 420 (560)
Q Consensus 341 ~~~~l~~Y~~~L~~l~~w~qQL~~ES~GK~~~~~G~~~~~~tgpiv~g~~Gt~dqHS~~Qll~qG~~~~~~dfi~~~~~~ 420 (560)
++++++||+++|++|++|+|||||||+||+.+++|+ +++|||+|||++||+|||||+|++|||++++|+|||.+.++.
T Consensus 1 ~~~vl~~Y~~~L~~f~~w~qQL~~ES~GK~~~~~g~--~~~~G~~p~g~~Gt~dqHS~~Ql~~qG~~~~~~~fi~~~~~~ 78 (164)
T cd05016 1 KTHALLPYSQRLERFPAWLQQLDMESNGKSVTRDGE--DYPTGPIPWGAPGTNDQHSFFQLIHQGTKDKPVDFIAVKKPQ 78 (164)
T ss_pred CeEEEEEcHHHHHHHHHHHHHhHhhcCCCccccCCC--cCCceeEEecCCCCCCCCcccchhhcCCCcEEEEEEEECCcC
Confidence 368999999999999999999999999999999999 889999999999999999999999999999999999988654
Q ss_pred CC----CCcchhhHHHhhhhhhhHHHHhCCCCHHHHHHHHHHcCCChhhhhhhcCCcccCCCcceeEEEEccCChhhHHH
Q psy4522 421 NP----IENNLHHKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQGNRPTNSIVVKKITPFTLGA 496 (560)
Q Consensus 421 ~~----~~~~~~~~~l~~n~laq~~al~~Gk~~~~~~~~~~~~g~~~~~~~~l~~~~~~~g~rPs~~I~l~~l~~~~LG~ 496 (560)
++ +....+|+.+.+|+++|.+||+ ++|||||++|.++++||++||+
T Consensus 79 ~~~~~~~~~~~~~~~l~a~~~a~~~aL~------------------------------~~g~~P~~~i~l~~l~~~~lG~ 128 (164)
T cd05016 79 NDVLDYLAGKTLHDLLLANCLATREALM------------------------------FPGGRPSNTIVLPELTPYTLGA 128 (164)
T ss_pred cchhhcccCCcHHHHHHHHHHHHHHHHH------------------------------hcCCCceEEEEeCCCCHHHHHH
Confidence 32 2223567888888888876654 2789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHH
Q psy4522 497 LIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAI 532 (560)
Q Consensus 497 Lia~yE~~t~v~g~l~gINpFDQpGVE~gK~~a~~i 532 (560)
||++|||+|+++|++||||||||||||+||++|++|
T Consensus 129 L~~~yE~~t~~~G~l~gINpFDQpgVE~gK~~a~~i 164 (164)
T cd05016 129 LLALYEHKTAVQGALLGINPFDQPGVELGKKLAKKI 164 (164)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCChhHHHHHHHHhcC
Confidence 999999999999999999999999999999999875
No 14
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=100.00 E-value=7.9e-34 Score=267.61 Aligned_cols=155 Identities=53% Similarity=0.767 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCC-CCeEEEEecCChhHHHHHHhhcCCCC
Q psy4522 132 AVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAV-GPRVHFVSNIDGTHLAEVLKKVNPET 210 (560)
Q Consensus 132 ~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~-~~~~~f~~n~Dp~~~~~~l~~l~~~~ 210 (560)
+.+.+|+++++++++| +++++||++|||||++|++++.+++.++.. +++++|++|+||+.+.++++.+++++
T Consensus 2 ~~~~~i~~~~~~i~~~-------~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~~ 74 (158)
T cd05015 2 AELERIKEFAEKVRSG-------KKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDPET 74 (158)
T ss_pred hHHHHHHHHHHHHhcC-------CCCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHHHHHHHHhCCccc
Confidence 3678999999999974 359999999999999999999999987653 68899999999999999999999999
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCchhHHh-cccccCCeeeccCCCCCCcccchhhhH
Q psy4522 211 VLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKVAE-FGIDTANMFGFWDWVGGRYSLWSAIGL 289 (560)
Q Consensus 211 Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~~~~~-~gi~~~~~f~~~d~VGGRfSv~SavGL 289 (560)
|+||++||||+|.||+.+++.+++||.+++++ ...+|+|+||++++.+.+ .+....++|.+|++||||||++|++||
T Consensus 75 tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~--~~~~~~vaiT~~~s~l~~~a~~~~~~~~~~~~~vggR~S~Ls~~gl 152 (158)
T cd05015 75 TLFIVISKSGTTLETLANARLAREWLEEAGGD--DLAKHFVAITDNGSGLLKKAGIEGLNTFEIPDWVGGRFSVLSSVGG 152 (158)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHHHHHHhccc--cccceEEEEcCCChHHHHHcCCCcceeeeCCCCCCchHHHHhHHHH
Confidence 99999999999999999999999999988764 357899999999888877 444445799999999999999999999
Q ss_pred HHHHhh
Q psy4522 290 SIALNI 295 (560)
Q Consensus 290 ~~a~~~ 295 (560)
+|++++
T Consensus 153 ~p~a~~ 158 (158)
T cd05015 153 LPLALA 158 (158)
T ss_pred HHHHHC
Confidence 998864
No 15
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=99.98 E-value=2.2e-31 Score=279.74 Aligned_cols=289 Identities=14% Similarity=0.032 Sum_probs=213.8
Q ss_pred CcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy4522 156 PITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNW 235 (560)
Q Consensus 156 ~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~ 235 (560)
++++|+++|+|||+++.+.+...+... .+..+.++. |.. +...-.+++++|++|+||+|.||+..++.+++
T Consensus 33 ~~~~I~i~G~GgS~~~a~~~~~~l~~~-~~~~~~~~~--~~~-----~~~~~~~~dlvI~iS~SG~T~e~~~a~~~a~~- 103 (337)
T PRK08674 33 KIDNIVISGMGGSGIGGDLLRILLFDE-LKVPVFVNR--DYT-----LPAFVDEKTLVIAVSYSGNTEETLSAVEQALK- 103 (337)
T ss_pred CCCEEEEEECcHHHHHHHHHHHHHHhc-CCCcEEEeC--ccc-----hhhcCCCCcEEEEEcCCCCCHHHHHHHHHHHH-
Confidence 478999999999999999988776322 133444432 211 12223788999999999999999998888775
Q ss_pred HHhcCCCcccccCeEEEEecCchhHHhcccc-cCCeeeccCCCCCCcc----------cchhhhHHHHHhhCchhHHHHH
Q psy4522 236 FLQHSKDPASVAKHFVALSTNAGKVAEFGID-TANMFGFWDWVGGRYS----------LWSAIGLSIALNIGYNNFERLL 304 (560)
Q Consensus 236 l~~~~~~~~~~~~h~vaVTt~~~~~~~~gi~-~~~~f~~~d~VGGRfS----------v~SavGL~~a~~~G~d~~~~lL 304 (560)
+ .-.+|+||++. ++.+++-. ...++.+|..++|||| +++.+|++|+... | +++++
T Consensus 104 ---~-------ga~vIaIT~~~-~L~~~a~~~~~~~i~ip~~~~~r~s~~~ll~~l~~~l~~~Gl~~~~~~--d-~~~~~ 169 (337)
T PRK08674 104 ---R-------GAKIIAITSGG-KLKEMAKEHGLPVIIVPGGYQPRAALGYLFTPLLKILEKLGLIPDKSA--E-VLETK 169 (337)
T ss_pred ---C-------CCeEEEECCCc-hHHHHHHhcCCeEEEeCCCCcchhhHHHHHHHHHHHHHHcCCCccchh--h-HHHHH
Confidence 2 23688888654 56665322 1237899999999999 9999999886654 7 79999
Q ss_pred hHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHhccCCCceEEEEeChhhHHhHHHHHhHhhhHhcCcccccCCeeeecccc
Q psy4522 305 AGAHFMDNHFQNT-PINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMESNGKYVTRQGTVVNYSTG 383 (560)
Q Consensus 305 ~GA~~md~~f~~~-~~~~N~p~~lAll~~~~~~~~g~~~~~l~~Y~~~L~~l~~w~qQL~~ES~GK~~~~~G~~~~~~tg 383 (560)
+|+.++.+.+... +..+|++..+|. . . +....+++. +..+..++.||+|+|+||.|--
T Consensus 170 ~~l~~~~~~~~~~~~~~~~~A~~lA~---~---~-~~~~pv~~g-s~~~~~~a~~~~~~~~Ena~~~------------- 228 (337)
T PRK08674 170 IVLSELAEGLKEKVPTLKNLAKRLAG---K---L-YGRIPVIYG-SGLTLAVAYRWKTQINENAKYP------------- 228 (337)
T ss_pred HHHHHHHHhhCcCCCcccCHHHHHHH---H---H-hCCCCEEEe-CcccHHHHHHHHHHHHHhcCCc-------------
Confidence 9999999988643 456777765443 1 1 223666677 8999999999999999999531
Q ss_pred ceecCCCCCCcchhHHHHHHhc-CCcccceeEeccCCCCCCCcchhhHHHhhhhhhhHHHHhCCCCHHHHHHHHHHcCCC
Q psy4522 384 PIVWGEPGTNGQHAFYQLIHQG-TKLIPADFIAPAISQNPIENNLHHKILLSNFLAQTEALAKGKSPAEAEAELKATGMP 462 (560)
Q Consensus 384 piv~g~~Gt~dqHS~~Qll~qG-~~~~~~dfi~~~~~~~~~~~~~~~~~l~~n~laq~~al~~Gk~~~~~~~~~~~~g~~ 462 (560)
++.+.++.+||+..|++.+| +++..+.|+..... . |.... .+. +-....
T Consensus 229 --~~~~~~pe~~H~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~----~~~---------~~t~~~------- 278 (337)
T PRK08674 229 --AFYNEIPELNHNEIVGYERPQSLLKYFFVVVLRDS-------E-HPRIK----KRV---------EITIDI------- 278 (337)
T ss_pred --cccccCCcccccceeeccCchhhccceEEEEEcCC-------c-cHHHH----HHH---------HHHHHH-------
Confidence 23577889999999999999 57777777655421 1 22110 000 000111
Q ss_pred hhhhhhhcCCcccCCCcceeEEEEc-cCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHH
Q psy4522 463 AETVKKILPHKVFQGNRPTNSIVVK-KITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLA 529 (560)
Q Consensus 463 ~~~~~~l~~~~~~~g~rPs~~I~l~-~l~~~~LG~Lia~yE~~t~v~g~l~gINpFDQpGVE~gK~~a 529 (560)
+ -..+.|++.|..+ +.+++.+|+|++++++++++.|.++||||||||+||.+|+.+
T Consensus 279 ---~--------~~~~~~~~~i~~~g~~~~~~l~~L~~~~d~as~~la~~~gvdP~~~~~ie~~K~~~ 335 (337)
T PRK08674 279 ---L--------TEAVINVIEIYPEGNSPLARIFSLIYLGDFASLYLAELRGVDPTPVPIIDYLKRRL 335 (337)
T ss_pred ---H--------HhcCCCeEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHHh
Confidence 1 1357999999999 699999999999999999999999999999999999999876
No 16
>cd05798 SIS_TAL_PGI SIS_TAL_PGI: Transaldolase (TAL)/ Phosphoglucose isomerase (PGI). This group represents the SIS (Sugar ISomerase) PGI domain, of a multifunctional protein (TAL-PGI ) having both TAL and PGI activities. TAL_PGI contains an N-terminal TAL domain and a C-terminal PGI domain. TAL catalyzes the reversible conversion of sedoheptulose-7-phosphate (S7P) and glyceraldehyde-3-phosphate (G3P), to fructose-6-phosphate (F6P) and erythrose-4-phosphate (E4P). PGI catalyzes the reversible isomerization of F6P to glucose-6-phosphate (G6P). It has been suggested for Gluconobacter oxydans TAL_PGI that this enzyme generates E4P and G6P directly from S7P and G3P. G. oxydans TAL_PGI contributes to increased xylitol production from D-arabitol. As xylitol is an alternative natural sweetner to sucrose, the microbial conversion of D-arabitol to xylitol is of interest to food and pharmaceutical industries.
Probab=99.96 E-value=6.4e-29 Score=224.68 Aligned_cols=127 Identities=21% Similarity=0.266 Sum_probs=92.6
Q ss_pred EEEEeChhhHHhHHHHHhHhhhHhcCcccccCCeeeeccccceecCCCCCCcchhHHHHHHhcCCcccceeEeccCCCCC
Q psy4522 343 HALLPYDQYLHRFAAYFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNP 422 (560)
Q Consensus 343 ~~l~~Y~~~L~~l~~w~qQL~~ES~GK~~~~~G~~~~~~tgpiv~g~~Gt~dqHS~~Qll~qG~~~~~~dfi~~~~~~~~ 422 (560)
.+.++|+++|+.|++|++|||+||+||+ |+.+ -|+ .|||+.| |++..-|.+.+
T Consensus 2 k~~~~y~~~l~~f~~W~~QL~AES~GK~----G~Gl----~Pv--------~~hS~~q-----p~~~~~d~~~i------ 54 (129)
T cd05798 2 KVTIIASPGIASLGAWLEQLIAESTGKE----GKGI----IPV--------DGEPLGD-----PAVYGDDRVFV------ 54 (129)
T ss_pred eEEEecchhHHhHHHHHHHHHHHhcCCC----Ccee----eec--------CCCCCCC-----CCCCCCCeEEE------
Confidence 3678999999999999999999999995 5421 233 2999999 55422222100
Q ss_pred CCcchhhHHHhhhhhhhHHHHhCCCCHHHH-HHHHHHcCCChhhhhhhcCCcccCCCcceeEEEEccCChhhHHHHHHHH
Q psy4522 423 IENNLHHKILLSNFLAQTEALAKGKSPAEA-EAELKATGMPAETVKKILPHKVFQGNRPTNSIVVKKITPFTLGALIAMY 501 (560)
Q Consensus 423 ~~~~~~~~~l~~n~laq~~al~~Gk~~~~~-~~~~~~~g~~~~~~~~l~~~~~~~g~rPs~~I~l~~l~~~~LG~Lia~y 501 (560)
+| +++++ +.+. ..++.++ ..+|+|++.|.++ ||++||+||++|
T Consensus 55 -------------~L----------~~~~~~~~~~---------~at~~AL--~~~g~P~~~i~~~--~~~~lG~l~~~~ 98 (129)
T cd05798 55 -------------YL----------RLAGEADADQ---------EEALLAL--EAAGHPVIRIDLD--DAYDLGQEFFRW 98 (129)
T ss_pred -------------EE----------echhhhHHHH---------HHHHHHH--HhCCCCeEEEecC--CHHHHHHHHHHH
Confidence 01 00111 0111 1111222 2578999999997 999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCcchhHHHHHHHHH
Q psy4522 502 EHKIFVQGIIWDINSYDQWGVELGKQLAKAI 532 (560)
Q Consensus 502 E~~t~v~g~l~gINpFDQpGVE~gK~~a~~i 532 (560)
|++|+++|++||||||||||||+||++|+++
T Consensus 99 e~ata~~g~llgINpFDQPgVE~~K~~~~~~ 129 (129)
T cd05798 99 EMATAVAGAVLGINPFDQPDVEASKIETRRL 129 (129)
T ss_pred HHHHHHHHHhcCcCCCCCccHHHHHHHHhcC
Confidence 9999999999999999999999999999864
No 17
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=99.48 E-value=1.4e-11 Score=128.26 Aligned_cols=281 Identities=13% Similarity=0.116 Sum_probs=173.6
Q ss_pred cCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy4522 157 ITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWF 236 (560)
Q Consensus 157 i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l 236 (560)
+++|+++|+|||.++.+.+...+.....+..++++.+.. +... ..+++++|++|+||+|.||+..++.+++
T Consensus 21 ~~~I~i~G~G~S~~~a~~l~~~l~~~~~~~~v~~~~d~~------l~~~-~~~~dlvI~iS~SG~t~e~~~a~~~A~~-- 91 (308)
T TIGR02128 21 YDEIVICGMGGSGIAGRIISILLLEKSFQGPVFVVKDYR------LPRF-VDGKTLLIAVSYSGNTEETLSAVEEAKK-- 91 (308)
T ss_pred CCEEEEEEecHHHHHHHHHHHHHHHhCCCccEEEEcCcc------cccc-CCCCeEEEEEcCCCCCHHHHHHHHHHHH--
Confidence 578999999999999999888876532123444443221 1223 3678999999999999999998887764
Q ss_pred HhcCCCcccccCeEEEEecCchhHHhccccc-CCeeeccCCCCCCccc---chhhhHHHHHhhCchhHHHHHhHHHHHHH
Q psy4522 237 LQHSKDPASVAKHFVALSTNAGKVAEFGIDT-ANMFGFWDWVGGRYSL---WSAIGLSIALNIGYNNFERLLAGAHFMDN 312 (560)
Q Consensus 237 ~~~~~~~~~~~~h~vaVTt~~~~~~~~gi~~-~~~f~~~d~VGGRfSv---~SavGL~~a~~~G~d~~~~lL~GA~~md~ 312 (560)
+ ...+|+||+++ ++.+.+... ..++.+|+.++||||+ +++++++++..+|.| +++.-+ ...
T Consensus 92 --~-------g~~ii~iT~~g-~L~~~a~~~~~~~i~vP~~~~~R~s~~~~~~~~l~~l~~~~g~d-~~~~~~----~l~ 156 (308)
T TIGR02128 92 --K-------GAKVIAITSGG-RLEEMAKERGLDVIKIPKGLQPRAAFPYLLTPLILMLIKPLGID-IEEAEL----LEG 156 (308)
T ss_pred --c-------CCEEEEECCCc-HHHHHHHhcCCeEEEcCCCCCCeeeHHHHHHHHHHHHHHHcCCC-hHHHHH----Hhc
Confidence 2 33688888654 555544322 2378899999999999 788888887778988 444311 111
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHhccCCCceEEEEeChhhHHhHHHHHhHhhhHhcCcccccCCeeeeccccceecCCCCC
Q psy4522 313 HFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGT 392 (560)
Q Consensus 313 ~f~~~~~~~N~p~~lAll~~~~~~~~g~~~~~l~~Y~~~L~~l~~w~qQL~~ES~GK~~~~~G~~~~~~tgpiv~g~~Gt 392 (560)
. ...+..+|++-.+|. +. .| ..-++..-++ ....+..|++-+.|--+--. .+..- +
T Consensus 157 ~-~~~~~~~n~Ak~LA~---~l---~~-~~pvi~~~~~-~~~~A~R~k~~l~enak~~a-------~~~~l--------p 212 (308)
T TIGR02128 157 G-LDTPKLKALAKRLAE---EI---YN-RIPVIYSSSP-TRPIAERWKNEINENAKSPA-------YYNIL--------P 212 (308)
T ss_pred C-CccccccCHHHHHHH---Hh---hC-CCCEEEeCCc-cHHHHHHHHHHHHhhcCCcc-------ccccC--------C
Confidence 1 234567899988876 22 23 2344455445 77788888888788444321 11111 1
Q ss_pred CcchhHHHHHHhcCCcccceeEeccCCCCCCCcchhhHHHhhhhhhhHHHHhCCCCHHHHHHHHHHcCCChhhhhhhcCC
Q psy4522 393 NGQHAFYQLIHQGTKLIPADFIAPAISQNPIENNLHHKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPH 472 (560)
Q Consensus 393 ~dqHS~~Qll~qG~~~~~~dfi~~~~~~~~~~~~~~~~~l~~n~laq~~al~~Gk~~~~~~~~~~~~g~~~~~~~~l~~~ 472 (560)
..-|.....+ +|+... +.++......+ |.. ..+. -++-.++
T Consensus 213 e~~hn~i~~~-~~~~~~-~~~~~~~d~~d-------~~~-----~~~r---------~~~~~~~---------------- 253 (308)
T TIGR02128 213 ELNHNEIEGL-EDPYGL-YEIVFMSDESD-------HSR-----CPKR---------VDITEKI---------------- 253 (308)
T ss_pred cccccceeee-cccccc-ceEEEeecccc-------chh-----HHHH---------HHHHHHH----------------
Confidence 1222222211 111111 11121211111 100 0000 0111110
Q ss_pred cccCCCcceeEEEEccCCh-hhHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q psy4522 473 KVFQGNRPTNSIVVKKITP-FTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQL 528 (560)
Q Consensus 473 ~~~~g~rPs~~I~l~~l~~-~~LG~Lia~yE~~t~v~g~l~gINpFDQpGVE~gK~~ 528 (560)
-+.|.+.|.-+.-++ ..|=.|+++-.++.++.+.+.|+||..-+-++..|+.
T Consensus 254 ----~~~~~~~i~~~g~~~l~~l~~li~~~d~as~yLA~~~g~dP~~~~~i~~lk~~ 306 (308)
T TIGR02128 254 ----LGVVFISIYSRGNSLLARILSLIHLAGYVSVKLAELRGVDPEPVPPIDKLKRR 306 (308)
T ss_pred ----hCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccccHHHHHHHh
Confidence 156677777777776 8889999999999999999999999999988888874
No 18
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=99.01 E-value=2.6e-09 Score=95.83 Aligned_cols=114 Identities=20% Similarity=0.223 Sum_probs=79.2
Q ss_pred eEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHh
Q psy4522 159 DVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQ 238 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~ 238 (560)
+|+++|+|+|+...+.+...+.... +.++.+..... + .....+++++|++|+||+|.|++..++.+++
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~-~~~~~~~~~~~---~----~~~~~~~dl~I~iS~SG~t~e~i~~~~~a~~---- 68 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDEA-KIPVYVVKDYT---L----PAFVDRKTLVIAVSYSGNTEETLSAVEQAKE---- 68 (119)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHhcc-CCCEEEecCcc---C----cCCCCCCCEEEEEECCCCCHHHHHHHHHHHH----
Confidence 4789999999999988877765421 34555553211 1 1134678999999999999999998887765
Q ss_pred cCCCcccccCeEEEEecCchhHHhccccc-CCeeeccCCCCCCcccchhhhHHHH
Q psy4522 239 HSKDPASVAKHFVALSTNAGKVAEFGIDT-ANMFGFWDWVGGRYSLWSAIGLSIA 292 (560)
Q Consensus 239 ~~~~~~~~~~h~vaVTt~~~~~~~~gi~~-~~~f~~~d~VGGRfSv~SavGL~~a 292 (560)
+ +-++|+||.+.+ +.++.-+. ..++++|+..|||||+|.-+-=.++
T Consensus 69 ~-------g~~iI~IT~~~~-l~~~~~~~~~~~~~~p~~~~~r~s~~~~~~~~~~ 115 (119)
T cd05017 69 R-------GAKIVAITSGGK-LLEMAREHGVPVIIIPKGLQPRAAFPYLFTALLN 115 (119)
T ss_pred C-------CCEEEEEeCCch-HHHHHHHcCCcEEECCCCCCCceeHHHHHHHHHH
Confidence 2 347889987653 44332211 1378999999999999976543333
No 19
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=98.07 E-value=5.7e-05 Score=79.99 Aligned_cols=109 Identities=12% Similarity=0.089 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeE
Q psy4522 133 VKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVL 212 (560)
Q Consensus 133 ~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl 212 (560)
..+.++++++.+.+. ++++|+++|.|+|+.....+...+.... +..+.+ .++..+.......-.++++
T Consensus 28 ~~~~l~~~~~~l~~~--------~~~~I~~~g~GsS~~aa~~~~~~~~k~~-~i~v~~---~~~~~~~~~~~~~~~~~~l 95 (340)
T PRK11382 28 DVPLVHAIVEEMVKR--------DIDRIYFVACGSPLNAAQTAKHLADRFS-DLQVYA---ISGWEFCDNTPYRLDDRCA 95 (340)
T ss_pred hhHHHHHHHHHHHhC--------CCCEEEEEEechHHHHHHHHHHHHHHHc-CCCeEE---eccHHHHhcCCcCCCCCCE
Confidence 445677888888763 4899999999999998888776664432 223333 2334444332222256789
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc-hhHHhcc
Q psy4522 213 FIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA-GKVAEFG 264 (560)
Q Consensus 213 ~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~-~~~~~~g 264 (560)
+|++|.||.|.||+..++.+++ + +-+.|+||.++ +.+.+.+
T Consensus 96 vI~iS~SGeT~e~i~al~~ak~----~-------Ga~~I~IT~~~~S~L~~~a 137 (340)
T PRK11382 96 VIGVSDYGKTEEVIKALELGRA----C-------GALTAAFTKRADSPITSAA 137 (340)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH----c-------CCeEEEEECCCCChHHHhC
Confidence 9999999999999986666654 3 34789998874 4565543
No 20
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=98.02 E-value=2.8e-05 Score=82.21 Aligned_cols=107 Identities=20% Similarity=0.168 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeE
Q psy4522 133 VKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVL 212 (560)
Q Consensus 133 ~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl 212 (560)
....+.++++.++.. ++++|+.+|.|||+-....+...+..... .. +..+.+..+...-.....++++
T Consensus 23 ~~~~~~~l~~~l~~~--------~~~~I~~~g~GsS~~~~~~~~~~~~~~~~---~~-~~~~~~se~~~~~~~~~~~~~l 90 (340)
T COG2222 23 NRAVLAELADFLRKR--------GIDRILFVGCGSSLHAATPAKYLLERELG---LL-VAAIPASEFLTNGAKYLGEDSL 90 (340)
T ss_pred hhhHHHHHHHHHHhC--------CCcEEEEEecCchHHHHHHHHHHHHHhhC---ce-eeeechhHHhccCccccCCCeE
Confidence 455667777777764 28899999999999888888877764322 22 3335666666666666778899
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCch-hHHh
Q psy4522 213 FIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAG-KVAE 262 (560)
Q Consensus 213 ~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~-~~~~ 262 (560)
+|++|+||+|.|++++++.++. . +.+.|++|...+ ++.+
T Consensus 91 vi~~S~SG~TpE~vaa~~~a~~----~-------ga~~i~lT~~~dSpLa~ 130 (340)
T COG2222 91 VIAFSQSGNTPESVAAAELAKE----G-------GALTIALTNEEDSPLAR 130 (340)
T ss_pred EEEEeCCCCCHHHHHHHHHhcc----C-------CCeEEEEecCCCChhhh
Confidence 9999999999999988777652 1 446677877644 4443
No 21
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=97.97 E-value=3.6e-05 Score=82.60 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHH-HHHHhhcCC-C
Q psy4522 132 AVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHL-AEVLKKVNP-E 209 (560)
Q Consensus 132 ~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~-~~~l~~l~~-~ 209 (560)
...+.+++|++.+... .+++|+++|.|+|+-....+...+.... +.++.... |..+ ..-...+++ +
T Consensus 25 ~~~~~~~~~~~~~~~~--------~~~~i~~~g~GsS~~a~~~~~~~~~~~~-~i~v~~~~---~~e~~~~~~~~~~~~~ 92 (372)
T TIGR02815 25 ALRPALNAFLEPLLAR--------ENLRIVLTGAGTSAFIGDALAPWLASHT-GLNVSAVP---TTDLVSNPRQYLDPTR 92 (372)
T ss_pred HhHHHHHHHHHHHHhC--------CCCEEEEEechHHHHHHHHHHHHHHHhc-CCCEEEEe---CcccccccccccCCCC
Confidence 3456777788877653 4789999999999999888887776542 34443332 2222 111233333 5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecC-chhHHhcccccCCeeeccCCCC
Q psy4522 210 TVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTN-AGKVAEFGIDTANMFGFWDWVG 278 (560)
Q Consensus 210 ~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~-~~~~~~~gi~~~~~f~~~d~VG 278 (560)
++|+|.+|.||+|.||+..++.+++ ++. +-..++||.+ ++.+.+..-...+++.++-.-|
T Consensus 93 ~~lvi~iSqSGeT~etv~a~~~ak~----~~~-----g~~~i~it~~~~s~la~~ad~~~~~~~i~~~ag 153 (372)
T TIGR02815 93 PTLLVSFARSGNSPESVAAVELADQ----LLP-----ECYHLVLTCNEEGALYRNAINRSNAFALLMPAE 153 (372)
T ss_pred CeEEEEEeCCcCcHHHHHHHHHHHH----hCC-----CCcEEEEEcCCCCHHHHhhcccCceeEEEccCC
Confidence 7999999999999999987777665 210 2356788776 4455554332223444543433
No 22
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=97.89 E-value=0.00011 Score=66.17 Aligned_cols=116 Identities=19% Similarity=0.122 Sum_probs=74.5
Q ss_pred eEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHh
Q psy4522 159 DVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQ 238 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~ 238 (560)
+|+++|.|+|+.....+...+.... +..+.+. ++..+.........++.++|++|+||+|.|++..++.+++
T Consensus 1 ~I~i~G~G~S~~~A~~~~~~l~~~~-~~~~~~~---~~~~~~~~~~~~~~~~dl~I~iS~SG~t~~~~~~~~~a~~---- 72 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKES-KLPVFVY---NAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFAKE---- 72 (120)
T ss_pred CEEEEEecHHHHHHhHHHHHHHHhc-CCceEEE---cHHHHhhcCcccCCCCcEEEEEeCCCCChHHHHHHHHHHH----
Confidence 3789999999988777776665321 2333322 3333333332223577999999999999999998887765
Q ss_pred cCCCcccccCeEEEEecCc-hhHHhcccccCCeeeccCCCCCCcccchhhhHHHHHhhC
Q psy4522 239 HSKDPASVAKHFVALSTNA-GKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNIG 296 (560)
Q Consensus 239 ~~~~~~~~~~h~vaVTt~~-~~~~~~gi~~~~~f~~~d~VGGRfSv~SavGL~~a~~~G 296 (560)
+ +-..|+||+++ +++.+.. +.++.++.. .|+..++=|++..++|
T Consensus 73 ~-------g~~vi~iT~~~~s~la~~a---d~~l~~~~~----~~~~~~~~~~~~~~~~ 117 (120)
T cd05710 73 K-------GATVIGLTDDEDSPLAKLA---DYVIVYGFE----IDAVEEKYLLLYMLAL 117 (120)
T ss_pred c-------CCeEEEEECCCCCcHHHhC---CEEEEccCC----cCccchHHHHHHHHHH
Confidence 2 33688998864 4555532 225666533 6666677766655543
No 23
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=97.57 E-value=0.00084 Score=64.36 Aligned_cols=99 Identities=19% Similarity=0.248 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEE
Q psy4522 134 KQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLF 213 (560)
Q Consensus 134 ~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~ 213 (560)
.+.++++++.+.+ -+.|.++|+|+|..-.+.+..-|... +.++++++. .. ...+ .++.++
T Consensus 20 ~~~l~~~~~~i~~----------a~~I~i~G~G~S~~~A~~~~~~l~~~--g~~~~~~~~--~~-----~~~~-~~~D~v 79 (179)
T cd05005 20 EEELDKLISAILN----------AKRIFVYGAGRSGLVAKAFAMRLMHL--GLNVYVVGE--TT-----TPAI-GPGDLL 79 (179)
T ss_pred HHHHHHHHHHHHh----------CCeEEEEecChhHHHHHHHHHHHHhC--CCeEEEeCC--CC-----CCCC-CCCCEE
Confidence 4577888888865 26799999999987777666655432 456666642 11 1233 567788
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc-hhHHhc
Q psy4522 214 IVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA-GKVAEF 263 (560)
Q Consensus 214 iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~-~~~~~~ 263 (560)
|++|.||.|.|++..++.+++ + +-.+|+||++. +++.+.
T Consensus 80 I~iS~sG~t~~~i~~~~~ak~----~-------g~~iI~IT~~~~s~la~~ 119 (179)
T cd05005 80 IAISGSGETSSVVNAAEKAKK----A-------GAKVVLITSNPDSPLAKL 119 (179)
T ss_pred EEEcCCCCcHHHHHHHHHHHH----C-------CCeEEEEECCCCCchHHh
Confidence 999999999999987776654 2 34689998864 456554
No 24
>PRK13938 phosphoheptose isomerase; Provisional
Probab=97.54 E-value=0.0016 Score=63.84 Aligned_cols=105 Identities=19% Similarity=0.230 Sum_probs=66.0
Q ss_pred CeEEEEcccCCchhHHHHHHHhcC-CC-CCCeEEEEe-cCChhHH-------------HHHHhhcCCCCeEEEEEcCCCC
Q psy4522 158 TDVVNIGIGGSDLGPLMVTEALKP-YA-VGPRVHFVS-NIDGTHL-------------AEVLKKVNPETVLFIVASKTFT 221 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~~~~~al~~-~~-~~~~~~f~~-n~Dp~~~-------------~~~l~~l~~~~Tl~iviSKSgt 221 (560)
..|+++|.|||.+-.+.+..-|.+ +. ..+++..+. ..|...+ .+.+...-.+.-++|++|.||+
T Consensus 46 ~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~~~~~~~~~~~DllI~iS~SG~ 125 (196)
T PRK13938 46 ARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARALEGSARPGDTLFAISTSGN 125 (196)
T ss_pred CEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCChHHHHHhhccccHHHHHHHHHHhcCCCCCEEEEEcCCCC
Confidence 469999999998877766655532 21 122333332 1222222 3444455567788999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc-hhHHhcccccCCeeeccCC
Q psy4522 222 TQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA-GKVAEFGIDTANMFGFWDW 276 (560)
Q Consensus 222 T~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~-~~~~~~gi~~~~~f~~~d~ 276 (560)
|.|++..++.+++ + +-.+|++|.++ +++.++. +.++.+|..
T Consensus 126 t~~vi~a~~~Ak~----~-------G~~vI~iT~~~~s~La~~a---D~~l~v~~~ 167 (196)
T PRK13938 126 SMSVLRAAKTARE----L-------GVTVVAMTGESGGQLAEFA---DFLINVPSR 167 (196)
T ss_pred CHHHHHHHHHHHH----C-------CCEEEEEeCCCCChhhhhC---CEEEEeCCC
Confidence 9999987777665 3 44789998864 4555543 224555543
No 25
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=97.53 E-value=0.0021 Score=57.57 Aligned_cols=112 Identities=18% Similarity=0.166 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEE
Q psy4522 136 HMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIV 215 (560)
Q Consensus 136 ~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iv 215 (560)
+++++++.+.+ -+.|+++|.|.|..-.+.+...|... +..+.+++ +..........+ .+++++|+
T Consensus 2 ~i~~~~~~i~~----------~~~i~i~g~g~s~~~a~~~~~~l~~~--~~~~~~~~--~~~~~~~~~~~~-~~~~~~i~ 66 (139)
T cd05013 2 ALEKAVDLLAK----------ARRIYIFGVGSSGLVAEYLAYKLLRL--GKPVVLLS--DPHLQLMSAANL-TPGDVVIA 66 (139)
T ss_pred HHHHHHHHHHh----------CCEEEEEEcCchHHHHHHHHHHHHHc--CCceEEec--CHHHHHHHHHcC-CCCCEEEE
Confidence 46778888875 36899999999987777666666543 34566664 344444444454 46789999
Q ss_pred EcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCch-hHHhcccccCCeeeccCC
Q psy4522 216 ASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAG-KVAEFGIDTANMFGFWDW 276 (560)
Q Consensus 216 iSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~-~~~~~gi~~~~~f~~~d~ 276 (560)
+|.||.|.+++..++.+++ + +-+.|+||.+.+ ++.++. +.++.+|..
T Consensus 67 iS~~g~~~~~~~~~~~a~~----~-------g~~iv~iT~~~~~~l~~~~---d~~i~~~~~ 114 (139)
T cd05013 67 ISFSGETKETVEAAEIAKE----R-------GAKVIAITDSANSPLAKLA---DIVLLVSSE 114 (139)
T ss_pred EeCCCCCHHHHHHHHHHHH----c-------CCeEEEEcCCCCChhHHhc---CEEEEcCCC
Confidence 9999999999876665544 2 346788888754 344332 235555543
No 26
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=97.51 E-value=0.00093 Score=62.79 Aligned_cols=114 Identities=17% Similarity=0.217 Sum_probs=70.8
Q ss_pred HHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcC-C---CCCCeEEEEecCChhHH-------------H
Q psy4522 138 KEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKP-Y---AVGPRVHFVSNIDGTHL-------------A 200 (560)
Q Consensus 138 ~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~-~---~~~~~~~f~~n~Dp~~~-------------~ 200 (560)
+.+++.++++ +.|.++|.|+|..=++.+...+.. + ..+..+.++. .|+... .
T Consensus 2 ~~~~~~l~~a----------~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~d~~~~~~~~ 70 (154)
T TIGR00441 2 VLLADSFKAG----------GKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALS-ADVSHLTCVSNDYGYEDVFS 70 (154)
T ss_pred hHHHHHHHCC----------CEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecC-CcHHHHHHhhccCCHHHHHH
Confidence 4567777764 579999999998765555433321 1 1134444433 244322 2
Q ss_pred HHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc-hhHHhcccccCCeeeccCC
Q psy4522 201 EVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA-GKVAEFGIDTANMFGFWDW 276 (560)
Q Consensus 201 ~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~-~~~~~~gi~~~~~f~~~d~ 276 (560)
+.++..-.+..++|++|.||.|.|++..++.+++ + +-.+|+||.++ +.+.+.. +-++.+|+.
T Consensus 71 ~~~~~~~~~~D~~i~iS~sG~t~~~~~~~~~a~~----~-------g~~ii~iT~~~~s~l~~~a---d~~l~~~~~ 133 (154)
T TIGR00441 71 RQVEALGQKGDVLLGISTSGNSKNVLKAIEAAKD----K-------GMKTITLAGKDGGKMAGLA---DIELRVPHF 133 (154)
T ss_pred HHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHH----C-------CCEEEEEeCCCCCchhhhC---CEEEEeCCC
Confidence 2223334678899999999999999987777765 2 34689998864 4555532 225666654
No 27
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=97.51 E-value=0.0013 Score=62.92 Aligned_cols=126 Identities=14% Similarity=0.138 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhc-CC---CCCCeEEEEecCChhHHHHH-------
Q psy4522 134 KQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALK-PY---AVGPRVHFVSNIDGTHLAEV------- 202 (560)
Q Consensus 134 ~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~-~~---~~~~~~~f~~n~Dp~~~~~~------- 202 (560)
.+++++.++.+.+-. ++-+.|+++|.|+|..-+.-+..-|. .+ ..+.++.++. .|+..+..+
T Consensus 16 ~~~i~~a~~~i~~~i------~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~ 88 (177)
T cd05006 16 AEAIEQAAQLLAEAL------LNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALT-TDTSILTAIANDYGYE 88 (177)
T ss_pred HHHHHHHHHHHHHHH------HCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEecc-CCHHHHHHHhccCCHH
Confidence 445555555553300 01357999999999877665554442 11 1134455443 233332221
Q ss_pred ------HhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc-hhHHhcccccCCeeeccC
Q psy4522 203 ------LKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA-GKVAEFGIDTANMFGFWD 275 (560)
Q Consensus 203 ------l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~-~~~~~~gi~~~~~f~~~d 275 (560)
+...-.++.++|++|.||.|.||+..++.+++ + +-..|+||++. +++.+.+ +.++.+|.
T Consensus 89 ~~~~~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~----~-------Ga~vI~IT~~~~s~La~~a---D~~l~~~~ 154 (177)
T cd05006 89 EVFSRQVEALGQPGDVLIGISTSGNSPNVLKALEAAKE----R-------GMKTIALTGRDGGKLLELA---DIEIHVPS 154 (177)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHH----C-------CCEEEEEeCCCCCchhhhC---CEEEEeCC
Confidence 22222567889999999999999987776654 3 34689998864 4565543 22566665
Q ss_pred CCCCC
Q psy4522 276 WVGGR 280 (560)
Q Consensus 276 ~VGGR 280 (560)
.--+|
T Consensus 155 ~~~~~ 159 (177)
T cd05006 155 DDTPR 159 (177)
T ss_pred CChHH
Confidence 54444
No 28
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=97.50 E-value=0.00075 Score=64.59 Aligned_cols=99 Identities=20% Similarity=0.260 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEE
Q psy4522 134 KQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLF 213 (560)
Q Consensus 134 ~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~ 213 (560)
.+++.++++.+.+ -+.|.++|.|+|..-.+.+..-|... ++.++++.... ...+ .++.++
T Consensus 17 ~~~~~~~~~~l~~----------a~~I~i~G~G~S~~~A~~~~~~l~~~--g~~~~~~~~~~-------~~~~-~~~Dv~ 76 (179)
T TIGR03127 17 EEELDKLADKIIK----------AKRIFVAGAGRSGLVGKAFAMRLMHL--GFNVYVVGETT-------TPSI-KKGDLL 76 (179)
T ss_pred HHHHHHHHHHHHh----------CCEEEEEecCHHHHHHHHHHHHHHhC--CCeEEEeCCcc-------cCCC-CCCCEE
Confidence 3567888888865 35799999999987666555545322 45666664211 1233 467889
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc-hhHHhc
Q psy4522 214 IVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA-GKVAEF 263 (560)
Q Consensus 214 iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~-~~~~~~ 263 (560)
|++|+||.|.|++..++.+++ + +-.+|+||.++ +.+.++
T Consensus 77 I~iS~sG~t~~~i~~~~~ak~----~-------g~~ii~IT~~~~s~la~~ 116 (179)
T TIGR03127 77 IAISGSGETESLVTVAKKAKE----I-------GATVAAITTNPESTLGKL 116 (179)
T ss_pred EEEeCCCCcHHHHHHHHHHHH----C-------CCeEEEEECCCCCchHHh
Confidence 999999999999987776654 3 34689998864 456554
No 29
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=97.48 E-value=0.00044 Score=61.93 Aligned_cols=88 Identities=22% Similarity=0.221 Sum_probs=60.5
Q ss_pred EEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhc
Q psy4522 160 VVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQH 239 (560)
Q Consensus 160 vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~ 239 (560)
|.++|+|+|..-...+...|.... +..+.+.+ +..+......+ .++.++|++|.||.|.|++..++.+++ +
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~~~~-~~~~~~~~---~~~~~~~~~~~-~~~d~~I~iS~sG~t~e~~~~~~~a~~----~ 72 (126)
T cd05008 2 ILIVGCGTSYHAALVAKYLLERLA-GIPVEVEA---ASEFRYRRPLL-DEDTLVIAISQSGETADTLAALRLAKE----K 72 (126)
T ss_pred EEEEEccHHHHHHHHHHHHHHHhc-CCceEEEe---hhHhhhcCCCC-CCCcEEEEEeCCcCCHHHHHHHHHHHH----c
Confidence 789999999887777766665432 13344433 44444333433 578889999999999999987777765 2
Q ss_pred CCCcccccCeEEEEecCc-hhHHhc
Q psy4522 240 SKDPASVAKHFVALSTNA-GKVAEF 263 (560)
Q Consensus 240 ~~~~~~~~~h~vaVTt~~-~~~~~~ 263 (560)
+-++|+||.++ +.+.++
T Consensus 73 -------g~~vi~iT~~~~s~la~~ 90 (126)
T cd05008 73 -------GAKTVAITNVVGSTLARE 90 (126)
T ss_pred -------CCeEEEEECCCCChHHHh
Confidence 34789999875 455554
No 30
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=97.33 E-value=0.0025 Score=65.79 Aligned_cols=106 Identities=19% Similarity=0.171 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeE
Q psy4522 133 VKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVL 212 (560)
Q Consensus 133 ~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl 212 (560)
..+++.+.++.+.+ -+.|+++|.|.|..-+.-+...|... +.++..++ |+......+..++ +..+
T Consensus 116 ~~~~l~~av~~L~~----------A~rI~~~G~g~S~~vA~~~~~~l~~i--g~~~~~~~--d~~~~~~~~~~~~-~~Dv 180 (281)
T COG1737 116 DEEALERAVELLAK----------ARRIYFFGLGSSGLVASDLAYKLMRI--GLNVVALS--DTHGQLMQLALLT-PGDV 180 (281)
T ss_pred CHHHHHHHHHHHHc----------CCeEEEEEechhHHHHHHHHHHHHHc--CCceeEec--chHHHHHHHHhCC-CCCE
Confidence 34577788888876 46799999888866555555555432 45556654 5555555666664 5667
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecC-chhHHhcc
Q psy4522 213 FIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTN-AGKVAEFG 264 (560)
Q Consensus 213 ~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~-~~~~~~~g 264 (560)
+|++|.||.|.|++..++.+++ + +-.+|+||++ .+++.++.
T Consensus 181 ~i~iS~sG~t~e~i~~a~~ak~----~-------ga~vIaiT~~~~spla~~A 222 (281)
T COG1737 181 VIAISFSGYTREIVEAAELAKE----R-------GAKVIAITDSADSPLAKLA 222 (281)
T ss_pred EEEEeCCCCcHHHHHHHHHHHH----C-------CCcEEEEcCCCCCchhhhh
Confidence 8889999999999998888765 2 4478999988 56666653
No 31
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=97.29 E-value=0.0022 Score=65.63 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEE
Q psy4522 134 KQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLF 213 (560)
Q Consensus 134 ~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~ 213 (560)
.++|.++++.+.+ -++|.++|+|+|..-++-+..-|... +.++++. .|+......+..+++ +.++
T Consensus 115 ~~~l~~~~~~i~~----------a~~I~i~G~G~s~~~A~~~~~~l~~~--g~~~~~~--~d~~~~~~~~~~~~~-~Dv~ 179 (278)
T PRK11557 115 EEKLHECVTMLRS----------ARRIILTGIGASGLVAQNFAWKLMKI--GINAVAE--RDMHALLATVQALSP-DDLL 179 (278)
T ss_pred HHHHHHHHHHHhc----------CCeEEEEecChhHHHHHHHHHHHhhC--CCeEEEc--CChHHHHHHHHhCCC-CCEE
Confidence 3577888888875 36799999999976666666555432 3444443 566666666777754 5578
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc-hhHHhc
Q psy4522 214 IVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA-GKVAEF 263 (560)
Q Consensus 214 iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~-~~~~~~ 263 (560)
|++|.||.|.|++..++.+++ + +-.+|+||++. +++.++
T Consensus 180 I~iS~sg~~~~~~~~~~~ak~----~-------ga~iI~IT~~~~s~la~~ 219 (278)
T PRK11557 180 LAISYSGERRELNLAADEALR----V-------GAKVLAITGFTPNALQQR 219 (278)
T ss_pred EEEcCCCCCHHHHHHHHHHHH----c-------CCCEEEEcCCCCCchHHh
Confidence 899999999999987777665 2 34689998864 455553
No 32
>PRK13936 phosphoheptose isomerase; Provisional
Probab=97.26 E-value=0.0079 Score=58.93 Aligned_cols=120 Identities=16% Similarity=0.242 Sum_probs=70.4
Q ss_pred HHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHH-HHhcCCC-CCCeEEEEe-cCChhHH---------H---
Q psy4522 136 HMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVT-EALKPYA-VGPRVHFVS-NIDGTHL---------A--- 200 (560)
Q Consensus 136 ~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~-~al~~~~-~~~~~~f~~-n~Dp~~~---------~--- 200 (560)
-+..+++.+.++ +.|.++|.|||..-++-+. +...++. ..+.+..+. +.|+... .
T Consensus 32 a~~~~~~~l~~a----------~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~ 101 (197)
T PRK13936 32 AVELMVQALLNE----------GKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVF 101 (197)
T ss_pred HHHHHHHHHHCC----------CEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHH
Confidence 344556666664 4699999999986555443 3332331 123333332 2333321 1
Q ss_pred -HHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc-hhHHhcccccCCeeeccCC
Q psy4522 201 -EVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA-GKVAEFGIDTANMFGFWDW 276 (560)
Q Consensus 201 -~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~-~~~~~~gi~~~~~f~~~d~ 276 (560)
+.+.....+.-++|++|.||.|.|++..++.+++ + +-.+|+||.++ +.+..+....+..+.+|..
T Consensus 102 ~~~~a~~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~----~-------g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~ 168 (197)
T PRK13936 102 SKQVRALGQPGDVLLAISTSGNSANVIQAIQAAHE----R-------EMHVVALTGRDGGKMASLLLPEDVEIRVPAE 168 (197)
T ss_pred HHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHH----C-------CCeEEEEECCCCChhhhhhccCCEEEEeCCC
Confidence 1123334567788889999999999987777654 2 44789998854 5566542222345666663
No 33
>PRK15482 transcriptional regulator MurR; Provisional
Probab=97.24 E-value=0.0027 Score=65.42 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEE
Q psy4522 135 QHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFI 214 (560)
Q Consensus 135 ~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~i 214 (560)
++++++++.+.+ -++|.++|+|.|..-++.+..-|... +.++.+. .|+.........++ +..++|
T Consensus 123 ~~l~~~~~~i~~----------A~~I~i~G~G~S~~~A~~l~~~l~~~--g~~~~~~--~d~~~~~~~~~~~~-~~Dv~i 187 (285)
T PRK15482 123 ARLQKIIEVISK----------APFIQITGLGGSALVGRDLSFKLMKI--GYRVACE--ADTHVQATVSQALK-KGDVQI 187 (285)
T ss_pred HHHHHHHHHHHh----------CCeeEEEEeChhHHHHHHHHHHHHhC--CCeeEEe--ccHhHHHHHHhcCC-CCCEEE
Confidence 577888888875 46799999999977666666655432 3445554 35554444445554 557899
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc-hhHHhc
Q psy4522 215 VASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA-GKVAEF 263 (560)
Q Consensus 215 viSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~-~~~~~~ 263 (560)
++|.||.|.|++..++.+++ + +-.+|+||+++ +++.++
T Consensus 188 ~iS~sg~t~~~~~~~~~a~~----~-------g~~iI~IT~~~~s~la~~ 226 (285)
T PRK15482 188 AISYSGSKKEIVLCAEAARK----Q-------GATVIAITSLADSPLRRL 226 (285)
T ss_pred EEeCCCCCHHHHHHHHHHHH----C-------CCEEEEEeCCCCCchHHh
Confidence 99999999999987777654 3 34789999864 455554
No 34
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=97.22 E-value=0.004 Score=60.83 Aligned_cols=102 Identities=21% Similarity=0.265 Sum_probs=64.9
Q ss_pred CeEEEEcccCCchhHHHHHHHhcC-C---CCCCeEEEEecCChhHH-------------HHHHhhcCCCCeEEEEEcCCC
Q psy4522 158 TDVVNIGIGGSDLGPLMVTEALKP-Y---AVGPRVHFVSNIDGTHL-------------AEVLKKVNPETVLFIVASKTF 220 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~~~~~al~~-~---~~~~~~~f~~n~Dp~~~-------------~~~l~~l~~~~Tl~iviSKSg 220 (560)
..|.++|.|+|..-++-+..-|.+ + ..+.++..+ .|+..+ .+....+..+..++|++|.||
T Consensus 45 ~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~--~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~Dv~I~iS~SG 122 (192)
T PRK00414 45 GKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI--SDVSHLSCVSNDFGYDYVFSRYVEAVGREGDVLLGISTSG 122 (192)
T ss_pred CEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec--CcHHHHhhhhccCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 469999999998755555433322 1 113444444 355332 333444557888999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc-hhHHhcccccCCeeeccC
Q psy4522 221 TTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA-GKVAEFGIDTANMFGFWD 275 (560)
Q Consensus 221 tT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~-~~~~~~gi~~~~~f~~~d 275 (560)
.|.+++..++.+++ + +-..|++|.+. +.+.++. +-++.+|.
T Consensus 123 ~t~~~i~~~~~ak~----~-------g~~iI~iT~~~~s~l~~~a---d~~l~~~~ 164 (192)
T PRK00414 123 NSGNIIKAIEAARA----K-------GMKVITLTGKDGGKMAGLA---DIEIRVPH 164 (192)
T ss_pred CCHHHHHHHHHHHH----C-------CCeEEEEeCCCCChhHHhC---CEEEEeCC
Confidence 99999987777765 3 34689998864 4555542 22455554
No 35
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=97.22 E-value=0.0057 Score=60.04 Aligned_cols=107 Identities=12% Similarity=0.127 Sum_probs=67.2
Q ss_pred CeEEEEcccCCchhHHHHHHHh-cCCC---CCCeEEEEecCChhH-------------HHHHHhhcCCCCeEEEEEcCCC
Q psy4522 158 TDVVNIGIGGSDLGPLMVTEAL-KPYA---VGPRVHFVSNIDGTH-------------LAEVLKKVNPETVLFIVASKTF 220 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~~~~~al-~~~~---~~~~~~f~~n~Dp~~-------------~~~~l~~l~~~~Tl~iviSKSg 220 (560)
..|.++|.|||+.-++-+..-| .++. .+.+...+ +.|... +.+.++.+-.+.-+++++|.||
T Consensus 42 ~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l-~~d~~~~ta~and~~~~~~f~~ql~~~~~~gDvli~iS~SG 120 (196)
T PRK10886 42 NKILCCGNGTSAANAQHFAASMINRFETERPSLPAIAL-NTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRG 120 (196)
T ss_pred CEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEe-cCcHHHHHHHhccccHHHHHHHHHHHcCCCCCEEEEEeCCC
Confidence 5699999999987665555444 3331 23333333 223332 2334445556778888899999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecC-chhHHhcccccCCeeeccCC
Q psy4522 221 TTQETITNATSAKNWFLQHSKDPASVAKHFVALSTN-AGKVAEFGIDTANMFGFWDW 276 (560)
Q Consensus 221 tT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~-~~~~~~~gi~~~~~f~~~d~ 276 (560)
+|.+.+..++.+++ + +-.+|++|.+ .+++.++.-..+-.+.+|..
T Consensus 121 ~s~~v~~a~~~Ak~----~-------G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~ 166 (196)
T PRK10886 121 NSRDIVKAVEAAVT----R-------DMTIVALTGYDGGELAGLLGPQDVEIRIPSH 166 (196)
T ss_pred CCHHHHHHHHHHHH----C-------CCEEEEEeCCCCChhhhccccCCEEEEcCCC
Confidence 99999987777665 3 4468999885 45676653222336777753
No 36
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=97.21 E-value=0.0014 Score=58.85 Aligned_cols=89 Identities=21% Similarity=0.240 Sum_probs=61.0
Q ss_pred eEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHh
Q psy4522 159 DVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQ 238 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~ 238 (560)
.|.++|.|+|..-.+.+...|... +.++.++. |+..+...+..+ .++.++|++|.||.|.|++..++.+++
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~--g~~~~~~~--~~~~~~~~~~~~-~~~d~vi~iS~sG~t~~~~~~~~~a~~---- 72 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSST--GTPAFFLH--PTEALHGDLGMV-TPGDVVIAISNSGETDELLNLLPHLKR---- 72 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcC--CCceEEcc--cchhhccccCcC-CCCCEEEEEeCCCCCHHHHHHHHHHHH----
Confidence 489999999998877777766432 34555553 333333334444 567889999999999999987666654
Q ss_pred cCCCcccccCeEEEEecCc-hhHHhc
Q psy4522 239 HSKDPASVAKHFVALSTNA-GKVAEF 263 (560)
Q Consensus 239 ~~~~~~~~~~h~vaVTt~~-~~~~~~ 263 (560)
+ +-+.|+||+++ +++.+.
T Consensus 73 ~-------g~~vi~iT~~~~s~la~~ 91 (128)
T cd05014 73 R-------GAPIIAITGNPNSTLAKL 91 (128)
T ss_pred C-------CCeEEEEeCCCCCchhhh
Confidence 3 34689999875 455553
No 37
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=97.20 E-value=0.0088 Score=61.74 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEE
Q psy4522 135 QHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFI 214 (560)
Q Consensus 135 ~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~i 214 (560)
+.+.++++.+.+ -+.|.++|+|+|..-++-+..-|... +.++.++ .|..........+ .++.++|
T Consensus 128 ~~l~~~~~~i~~----------A~~I~i~G~G~S~~~A~~l~~~l~~~--g~~~~~~--~d~~~~~~~~~~~-~~~Dl~I 192 (292)
T PRK11337 128 DEFHRAARFFYQ----------ARQRDLYGAGGSAAIARDVQHKFLRI--GVRCQAY--DDAHIMLMSAALL-QEGDVVL 192 (292)
T ss_pred HHHHHHHHHHHc----------CCeEEEEEecHHHHHHHHHHHHHhhC--CCeEEEc--CCHHHHHHHHhcC-CCCCEEE
Confidence 677788888865 46789999999976555554444322 4555555 3544443334445 4577789
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc-hhHHhcccccCCeeeccC
Q psy4522 215 VASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA-GKVAEFGIDTANMFGFWD 275 (560)
Q Consensus 215 viSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~-~~~~~~gi~~~~~f~~~d 275 (560)
++|.||.|.|++..++.+++ + +-++|+||++. +.+.++. +.+|.+|.
T Consensus 193 ~iS~sG~t~~~~~~~~~ak~----~-------g~~ii~IT~~~~s~la~~a---d~~l~~~~ 240 (292)
T PRK11337 193 VVSHSGRTSDVIEAVELAKK----N-------GAKIICITNSYHSPIAKLA---DYVICSTA 240 (292)
T ss_pred EEeCCCCCHHHHHHHHHHHH----C-------CCeEEEEeCCCCChhHHhC---CEEEEcCC
Confidence 99999999999987777654 3 45789999875 4555543 22555654
No 38
>PRK13937 phosphoheptose isomerase; Provisional
Probab=97.10 E-value=0.0071 Score=58.73 Aligned_cols=95 Identities=15% Similarity=0.210 Sum_probs=57.3
Q ss_pred CeEEEEcccCCchhHHHH-HHHhcCC---CCCCeEEEEecCChhHH-------------HHHHhhcCCCCeEEEEEcCCC
Q psy4522 158 TDVVNIGIGGSDLGPLMV-TEALKPY---AVGPRVHFVSNIDGTHL-------------AEVLKKVNPETVLFIVASKTF 220 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~~~-~~al~~~---~~~~~~~f~~n~Dp~~~-------------~~~l~~l~~~~Tl~iviSKSg 220 (560)
+.|.++|.|+|+.-++.+ .++...+ ..+.++..+. .|+..+ ...+...-.+..++|++|.||
T Consensus 39 ~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~-~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~Dl~i~iS~sG 117 (188)
T PRK13937 39 GKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALT-TDTSALTAIGNDYGFERVFSRQVEALGRPGDVLIGISTSG 117 (188)
T ss_pred CEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEecc-CcHHHHHHHhccCCHHHHHHHHHHhhCCCCCEEEEEeCCC
Confidence 569999999997544432 2333222 1133334332 233221 122222335778999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecC-chhHHhcc
Q psy4522 221 TTQETITNATSAKNWFLQHSKDPASVAKHFVALSTN-AGKVAEFG 264 (560)
Q Consensus 221 tT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~-~~~~~~~g 264 (560)
.|.|++..++.+++ + +-..|++|++ .+.+.+.+
T Consensus 118 ~t~~~~~~~~~ak~----~-------g~~~I~iT~~~~s~L~~~a 151 (188)
T PRK13937 118 NSPNVLAALEKARE----L-------GMKTIGLTGRDGGKMKELC 151 (188)
T ss_pred CcHHHHHHHHHHHH----C-------CCeEEEEeCCCCChhHHhC
Confidence 99999987777665 3 3468899886 45566543
No 39
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=96.99 E-value=0.0094 Score=61.03 Aligned_cols=104 Identities=12% Similarity=0.121 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEE
Q psy4522 134 KQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLF 213 (560)
Q Consensus 134 ~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~ 213 (560)
.+++.++++.|.+ -+.|.++|.|+|..-...+..-|... +..+...+ |..........+ .++.++
T Consensus 115 ~~~i~~~~~~i~~----------a~~I~i~G~G~S~~~a~~~~~~l~~~--g~~~~~~~--~~~~~~~~~~~~-~~~D~v 179 (284)
T PRK11302 115 PSAINRAVDLLTQ----------AKKISFFGLGASAAVAHDAQNKFFRF--NVPVVYFD--DIVMQRMSCMNS-SDGDVV 179 (284)
T ss_pred HHHHHHHHHHHHc----------CCeEEEEEcchHHHHHHHHHHHHHhc--CCceEecC--CHHHHHHHHHhC-CCCCEE
Confidence 4568888888875 36799999999976665444333322 33344332 332222223344 466788
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCchhHHhc
Q psy4522 214 IVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKVAEF 263 (560)
Q Consensus 214 iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~~~~~~ 263 (560)
|++|.||.|.|++..++.+++ + +-.+|+||.+.+.+.++
T Consensus 180 I~iS~sG~t~~~~~~~~~ak~----~-------g~~vI~IT~~~s~l~~~ 218 (284)
T PRK11302 180 VLISHTGRTKSLVELAQLARE----N-------GATVIAITSAGSPLARE 218 (284)
T ss_pred EEEeCCCCCHHHHHHHHHHHH----c-------CCeEEEECCCCChhHHh
Confidence 899999999999987777664 2 44789998755555553
No 40
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=96.98 E-value=0.0046 Score=60.68 Aligned_cols=89 Identities=24% Similarity=0.261 Sum_probs=63.9
Q ss_pred eEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHh
Q psy4522 159 DVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQ 238 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~ 238 (560)
.|||.|+|=|.+-.+.+.-.|... +.+.+||.-.+ ..+-.+--+. +.=++|.+|+||.|.|-+.-+..+++
T Consensus 41 kv~V~G~GkSG~Igkk~Aa~L~s~--G~~a~fv~p~e--a~hgdlg~i~-~~DvviaiS~SGeT~el~~~~~~aK~---- 111 (202)
T COG0794 41 KVFVTGVGKSGLIGKKFAARLAST--GTPAFFVGPAE--ALHGDLGMIT-PGDVVIAISGSGETKELLNLAPKAKR---- 111 (202)
T ss_pred cEEEEcCChhHHHHHHHHHHHHcc--CCceEEecCch--hccCCccCCC-CCCEEEEEeCCCcHHHHHHHHHHHHH----
Confidence 499999999999999888877653 57789997222 2222344454 44568889999999999876666554
Q ss_pred cCCCcccccCeEEEEecCchh-HHhc
Q psy4522 239 HSKDPASVAKHFVALSTNAGK-VAEF 263 (560)
Q Consensus 239 ~~~~~~~~~~h~vaVTt~~~~-~~~~ 263 (560)
. +-.+|+||++++. +.+.
T Consensus 112 ~-------g~~liaiT~~~~SsLak~ 130 (202)
T COG0794 112 L-------GAKLIAITSNPDSSLAKA 130 (202)
T ss_pred c-------CCcEEEEeCCCCChHHHh
Confidence 2 5578999999754 5443
No 41
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=96.98 E-value=0.0021 Score=57.49 Aligned_cols=102 Identities=18% Similarity=0.111 Sum_probs=64.4
Q ss_pred cCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy4522 157 ITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWF 236 (560)
Q Consensus 157 i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l 236 (560)
-++|+++|.|.|.--++.+...|... +....+.. -....+...+..+ .+++++|++|.||.|.|++..++.+++
T Consensus 5 ~~~i~i~G~G~s~~~A~~~~~~l~~~--~~~~~~~~-~~~~~~~~~~~~~-~~~d~vi~is~sg~~~~~~~~~~~ak~-- 78 (131)
T PF01380_consen 5 AKRIYIYGSGSSYGVAQYAALKLQKL--GRIVVISY-EAGEFFHGPLENL-DPDDLVIIISYSGETRELIELLRFAKE-- 78 (131)
T ss_dssp SSEEEEEESTHHHHHHHHHHHHHHHH--HSSEEEEE-EHHHHHTTGGGGC-STTEEEEEEESSSTTHHHHHHHHHHHH--
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHh--cCcceecc-chHHHhhhhcccc-cccceeEeeeccccchhhhhhhHHHHh--
Confidence 46899999999976665555545322 12233332 1222344446666 467899999999999999986665543
Q ss_pred HhcCCCcccccCeEEEEecC-chhHHhcccccCCeeeccCC
Q psy4522 237 LQHSKDPASVAKHFVALSTN-AGKVAEFGIDTANMFGFWDW 276 (560)
Q Consensus 237 ~~~~~~~~~~~~h~vaVTt~-~~~~~~~gi~~~~~f~~~d~ 276 (560)
. +-.+|+||++ .+++.+.. +.+|.+|..
T Consensus 79 --~-------g~~vi~iT~~~~~~l~~~a---d~~l~~~~~ 107 (131)
T PF01380_consen 79 --R-------GAPVILITSNSESPLARLA---DIVLYIPTG 107 (131)
T ss_dssp --T-------TSEEEEEESSTTSHHHHHS---SEEEEEESS
T ss_pred --c-------CCeEEEEeCCCCCchhhhC---CEEEEecCC
Confidence 3 3467899876 45566654 335666543
No 42
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=96.92 E-value=0.0028 Score=72.82 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=61.6
Q ss_pred CcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy4522 156 PITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNW 235 (560)
Q Consensus 156 ~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~ 235 (560)
+++.|+++|.|+|+.....+...|..... .. .+....+..+.. .. ...+++++|++|.||.|.||+..++.+++
T Consensus 321 ~~~~I~i~g~GsS~~aa~~~~~~l~~~~~-~~--~v~~~~~s~~~~-~~-~~~~~~lvI~ISqSGeT~d~i~al~~ak~- 394 (640)
T PTZ00295 321 NIKNLILVGCGTSYYAALFAASIMQKLKC-FN--TVQVIDASELTL-YR-LPDEDAGVIFISQSGETLDVVRALNLADE- 394 (640)
T ss_pred cCCEEEEEEeehHHHHHHHHHHHHHHhCC-CC--ceEEechHHhhh-hc-cCCCCCEEEEEeCCCCcHHHHHHHHHHHH-
Confidence 47889999999999998888776654321 11 111123343332 12 23468899999999999999987777654
Q ss_pred HHhcCCCcccccCeEEEEecCc-hhHHhc
Q psy4522 236 FLQHSKDPASVAKHFVALSTNA-GKVAEF 263 (560)
Q Consensus 236 l~~~~~~~~~~~~h~vaVTt~~-~~~~~~ 263 (560)
. +-..|+||.++ +.+.+.
T Consensus 395 ---~-------Ga~~IaITn~~~S~La~~ 413 (640)
T PTZ00295 395 ---L-------NLPKISVVNTVGSLIARS 413 (640)
T ss_pred ---C-------CCCEEEEECCCCChhHHh
Confidence 3 23678998775 455543
No 43
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=96.91 E-value=0.008 Score=68.55 Aligned_cols=91 Identities=18% Similarity=0.130 Sum_probs=60.2
Q ss_pred cCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy4522 157 ITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWF 236 (560)
Q Consensus 157 i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l 236 (560)
.+.|+++|+|+|+.....+...+.... +..+.+.. +..+...... ..+++++|++|.||+|.||+..++.+++
T Consensus 289 a~~I~~~G~GsS~~aa~~a~~~~~~~~-~~~~~~~~---~~~~~~~~~~-~~~~dlvI~iS~SG~T~e~i~a~~~ak~-- 361 (604)
T PRK00331 289 IDRIYIVACGTSYHAGLVAKYLIESLA-GIPVEVEI---ASEFRYRDPV-LSPKTLVIAISQSGETADTLAALRLAKE-- 361 (604)
T ss_pred CCEEEEEEeecHHHHHHHHHHHHHHHc-CCCEEEEe---hhhhhccCCC-CCCCeEEEEEcCCCCCHHHHHHHHHHHH--
Confidence 678999999999877766666654332 23333322 2233222222 3678999999999999999987776654
Q ss_pred HhcCCCcccccCeEEEEecCc-hhHHhc
Q psy4522 237 LQHSKDPASVAKHFVALSTNA-GKVAEF 263 (560)
Q Consensus 237 ~~~~~~~~~~~~h~vaVTt~~-~~~~~~ 263 (560)
+ +-+.|+||.++ +.+.+.
T Consensus 362 --~-------ga~~IaIT~~~~S~La~~ 380 (604)
T PRK00331 362 --L-------GAKTLAICNVPGSTIARE 380 (604)
T ss_pred --C-------CCCEEEEECCCCChhHHh
Confidence 3 33678998874 455554
No 44
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=96.90 E-value=0.0051 Score=64.26 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEE
Q psy4522 135 QHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFI 214 (560)
Q Consensus 135 ~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~i 214 (560)
+++.+.++.+.+. -+.|.++|.|+|+.-++-+..-|... +...++++ |+..+......+ .+..++|
T Consensus 29 ~~~~~~~~~l~~~---------~~~I~i~G~G~S~~~A~~~~~~l~~~--g~~~~~~~--~~~~~~~~~~~~-~~~d~~i 94 (321)
T PRK11543 29 DDFVRAANIILHC---------EGKVVVSGIGKSGHIGKKIAATLAST--GTPAFFVH--PAEALHGDLGMI-ESRDVML 94 (321)
T ss_pred HHHHHHHHHHHhc---------CCcEEEEecChhHHHHHHHHHHHHcC--CCceeecC--hHHHhhCCcCcc-CCCCEEE
Confidence 3566777777542 24699999999988777766655432 45556653 333333223333 5678899
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc-hhHHhc
Q psy4522 215 VASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA-GKVAEF 263 (560)
Q Consensus 215 viSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~-~~~~~~ 263 (560)
++|.||.|.|++..++.+++ + +-.+|+||.++ +.+.+.
T Consensus 95 ~iS~sG~t~~~~~~~~~ak~----~-------g~~vI~iT~~~~s~la~~ 133 (321)
T PRK11543 95 FISYSGGAKELDLIIPRLED----K-------SIALLAMTGKPTSPLGLA 133 (321)
T ss_pred EEeCCCCcHHHHHHHHHHHH----c-------CCeEEEEECCCCChhHHh
Confidence 99999999999987777765 3 34689999865 455554
No 45
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=96.87 E-value=0.0031 Score=72.93 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=60.1
Q ss_pred cCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy4522 157 ITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWF 236 (560)
Q Consensus 157 i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l 236 (560)
+++|+++|.|+|+.....+...+.... +..+... . +.++......+. +++++|++|.||+|.||+..++.+++
T Consensus 363 ~~~I~~~G~GsS~~aa~~a~~~l~kl~-~i~v~~~--~-~sef~~~~~~~~-~~~lvI~ISqSGeT~eti~Al~~Ak~-- 435 (680)
T PLN02981 363 SRRIVFIGCGTSYNAALAARPILEELS-GVPVTME--L-ASDLLDRQGPIY-REDTAVFVSQSGETADTLRALEYAKE-- 435 (680)
T ss_pred CCEEEEEEecHHHHHHHHHHHHHHHHh-CCCEEEe--c-chHHHhccccCC-CCCeEEEEeCCcCCHHHHHHHHHHHH--
Confidence 788999999999998887777665432 2333322 1 222322222233 46788899999999999987776654
Q ss_pred HhcCCCcccccCeEEEEecCc-hhHHhc
Q psy4522 237 LQHSKDPASVAKHFVALSTNA-GKVAEF 263 (560)
Q Consensus 237 ~~~~~~~~~~~~h~vaVTt~~-~~~~~~ 263 (560)
+ ..+.|+||.++ +.+.+.
T Consensus 436 --~-------Ga~~IaITn~~~S~La~~ 454 (680)
T PLN02981 436 --N-------GALCVGITNTVGSAISRG 454 (680)
T ss_pred --C-------CCcEEEEECCCCChhHhc
Confidence 3 23578998775 455543
No 46
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=96.80 E-value=0.018 Score=66.12 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEE
Q psy4522 135 QHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFI 214 (560)
Q Consensus 135 ~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~i 214 (560)
+.+.++++.|.+ -+.|.++|+|.|+.-...+..-|... +.++.+. .|..........++ ++.++|
T Consensus 456 ~~l~~aa~~L~~----------a~rI~i~G~G~S~~~A~~~~~~l~~l--g~~~~~~--~d~~~~~~~~~~l~-~~DvvI 520 (638)
T PRK14101 456 EHVEQAIDILNN----------ARRIEFYGLGNSNIVAQDAHYKFFRF--GIPTIAY--GDLYMQAASAALLG-KGDVIV 520 (638)
T ss_pred HHHHHHHHHHhc----------CCEEEEEEccHHHHHHHHHHHHHhcC--CceEEEc--CCHHHHHHHHhcCC-CCCEEE
Confidence 567778888765 46799999999987666555544322 3334433 35444433445554 556788
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCchhHHhc
Q psy4522 215 VASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKVAEF 263 (560)
Q Consensus 215 viSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~~~~~~ 263 (560)
++|.||.|.|++..++.+++ + +-.+|+||++.+.+.++
T Consensus 521 ~iS~sG~t~e~i~~~~~Ak~----~-------Ga~vIaIT~~~spLa~~ 558 (638)
T PRK14101 521 AVSKSGRAPELLRVLDVAMQ----A-------GAKVIAITSSNTPLAKR 558 (638)
T ss_pred EEeCCCCCHHHHHHHHHHHH----C-------CCeEEEEcCCCChhHhh
Confidence 89999999999987777654 3 34789999876666554
No 47
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=96.69 E-value=0.011 Score=68.20 Aligned_cols=91 Identities=11% Similarity=0.108 Sum_probs=60.2
Q ss_pred cCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy4522 157 ITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWF 236 (560)
Q Consensus 157 i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l 236 (560)
+++|+++|.|+|+.....+...+.... +..+... .+..+...... ..+++++|++|.||+|.||+..++.+++
T Consensus 354 a~rI~ivG~GtS~~aa~~ak~~~~kl~-~i~v~v~---~asef~~~~~~-~~~~dlvI~ISqSGeT~dtl~Al~~Ak~-- 426 (670)
T PTZ00394 354 SRRILFIACGTSLNSCLAVRPLFEELV-PLPISVE---NASDFLDRRPR-IQRDDVCFFVSQSGETADTLMALQLCKE-- 426 (670)
T ss_pred CCEEEEEEechHHHHHHHHHHHHHHhc-CCCEEEe---ccchhhhhccC-CCCCCEEEEEECCcCcHHHHHHHHHHHH--
Confidence 688999999999977776665554332 2333222 23333322222 3688999999999999999987777654
Q ss_pred HhcCCCcccccCeEEEEecCc-hhHHhc
Q psy4522 237 LQHSKDPASVAKHFVALSTNA-GKVAEF 263 (560)
Q Consensus 237 ~~~~~~~~~~~~h~vaVTt~~-~~~~~~ 263 (560)
+ +-+.|+||.++ +.+.+.
T Consensus 427 --~-------Ga~tIaITn~~~S~La~~ 445 (670)
T PTZ00394 427 --A-------GAMCVGITNVVGSSISRL 445 (670)
T ss_pred --C-------CCcEEEEECCCCCHHHHh
Confidence 3 23678998874 455443
No 48
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=96.67 E-value=0.014 Score=48.32 Aligned_cols=80 Identities=21% Similarity=0.165 Sum_probs=54.9
Q ss_pred EEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHH-HhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHh
Q psy4522 160 VVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEV-LKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQ 238 (560)
Q Consensus 160 vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~-l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~ 238 (560)
|+++|.|+|..-...+...|.... +.++.++. ++...... +..+ .++.+++++|+||+|.|+...++.+++
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~~-~~~~~~~~--~~~~~~~~~~~~~-~~~d~~i~iS~sg~t~~~~~~~~~a~~---- 72 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELT-GIEVVALI--ATELEHASLLSLL-RKGDVVIALSYSGRTEELLAALEIAKE---- 72 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhccc-CCceEEeC--CcHHHHHHHHhcC-CCCCEEEEEECCCCCHHHHHHHHHHHH----
Confidence 578999999888888777775431 35566654 22222222 3443 688999999999999999986666654
Q ss_pred cCCCcccccCeEEEEe
Q psy4522 239 HSKDPASVAKHFVALS 254 (560)
Q Consensus 239 ~~~~~~~~~~h~vaVT 254 (560)
+ +...|++|
T Consensus 73 ~-------g~~ii~it 81 (87)
T cd04795 73 L-------GIPVIAIT 81 (87)
T ss_pred c-------CCeEEEEe
Confidence 3 34578887
No 49
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=96.53 E-value=0.0058 Score=69.71 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=60.6
Q ss_pred CcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy4522 156 PITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNW 235 (560)
Q Consensus 156 ~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~ 235 (560)
+.+.|+++|+|+|+.....+...+.... +..+.++ .+..+...... ..+++++|++|.||.|.||+..++.+++
T Consensus 290 ~~~~I~~~G~GsS~~aa~~a~~~~~~~~-~i~~~~~---~~~~~~~~~~~-~~~~dlvI~iS~SG~T~e~v~a~~~ak~- 363 (607)
T TIGR01135 290 NVDRIQIVACGTSYHAGLVAKYLIERLA-GIPVEVE---IASEFRYRKPV-VDKDTLVIAISQSGETADTLAALRLAKE- 363 (607)
T ss_pred cCCEEEEEEeechHHHHHHHHHHHHHhc-CCCEEEe---cHHHHhhcCCC-CCCCCEEEEEeCCCCCHHHHHHHHHHHH-
Confidence 4678999999999776666655554322 2333333 23333332223 3688999999999999999987776654
Q ss_pred HHhcCCCcccccCeEEEEecCc-hhHHhc
Q psy4522 236 FLQHSKDPASVAKHFVALSTNA-GKVAEF 263 (560)
Q Consensus 236 l~~~~~~~~~~~~h~vaVTt~~-~~~~~~ 263 (560)
+ +-..|+||.++ +.+.+.
T Consensus 364 ---~-------ga~~IaIT~~~~S~La~~ 382 (607)
T TIGR01135 364 ---L-------GAKTLGICNVPGSTLVRE 382 (607)
T ss_pred ---c-------CCcEEEEECCCCChHHhh
Confidence 3 23678998874 455543
No 50
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=96.18 E-value=0.034 Score=58.32 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=67.4
Q ss_pred HHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEE
Q psy4522 136 HMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIV 215 (560)
Q Consensus 136 ~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iv 215 (560)
++++.++.+.+. -+.|.++|.|.|+.-.+.+..-|... +.++.++. +..........+ .++.++|+
T Consensus 35 ~l~~~~~~l~~a---------~~~I~i~G~G~S~~~a~~~~~~l~~~--g~~~~~~~--~~~~~~~~~~~~-~~~d~~I~ 100 (326)
T PRK10892 35 DFTLACEKMFWC---------KGKVVVMGMGKSGHIGRKMAATFAST--GTPSFFVH--PGEAAHGDLGMV-TPQDVVIA 100 (326)
T ss_pred HHHHHHHHHHhc---------CCeEEEEeCcHhHHHHHHHHHHHhcC--CceeEEeC--hHHhhccccccC-CCCCEEEE
Confidence 477778877542 14699999999988776666655432 45555543 222222223444 45679999
Q ss_pred EcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc-hhHHh
Q psy4522 216 ASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA-GKVAE 262 (560)
Q Consensus 216 iSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~-~~~~~ 262 (560)
+|.||.|.|++..++.+++ + +-.+|+||+++ +.+.+
T Consensus 101 iS~sG~t~~~~~~~~~ak~----~-------g~~vi~iT~~~~s~la~ 137 (326)
T PRK10892 101 ISNSGESSEILALIPVLKR----L-------HVPLICITGRPESSMAR 137 (326)
T ss_pred EeCCCCCHHHHHHHHHHHH----C-------CCcEEEEECCCCCcccc
Confidence 9999999999987777765 2 34688998875 34444
No 51
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=96.04 E-value=0.042 Score=50.42 Aligned_cols=98 Identities=13% Similarity=0.102 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHH-HHHHhhcCCCCeEEE
Q psy4522 136 HMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHL-AEVLKKVNPETVLFI 214 (560)
Q Consensus 136 ~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~-~~~l~~l~~~~Tl~i 214 (560)
+++++++.+.+ .++|+++|.|+|+.-..-...-|.... +++... .+..++ +--...+ .+++++|
T Consensus 2 ~~~~~a~~~~~----------~~~i~~~G~G~s~~~a~e~~~kl~e~~---~i~~~~-~~~~e~~hg~~~~~-~~~~~vi 66 (153)
T cd05009 2 DIKELAEKLKE----------AKSFYVLGRGPNYGTALEGALKLKETS---YIHAEA-YSAGEFKHGPIALV-DEGTPVI 66 (153)
T ss_pred hHHHHHHHHhc----------cCcEEEEcCCCCHHHHHHHHHHHHHHH---hhccee-ccHHHhccChhhhc-cCCCcEE
Confidence 45667777764 688999999999765544433332211 112222 233333 3333444 4577888
Q ss_pred EEcCCCCCHH-HHHHHHHHHHHHHhcCCCcccccCeEEEEecCchh
Q psy4522 215 VASKTFTTQE-TITNATSAKNWFLQHSKDPASVAKHFVALSTNAGK 259 (560)
Q Consensus 215 viSKSgtT~E-Tl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~~ 259 (560)
++|.||.|.| +.. +.+++++. ....|+||++...
T Consensus 67 ~is~~g~t~~~~~~----~~~~~~~~-------~~~vi~it~~~~s 101 (153)
T cd05009 67 FLAPEDRLEEKLES----LIKEVKAR-------GAKVIVITDDGDA 101 (153)
T ss_pred EEecCChhHHHHHH----HHHHHHHc-------CCEEEEEecCCcc
Confidence 8999998776 553 34444433 4578888877643
No 52
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=95.98 E-value=0.091 Score=53.71 Aligned_cols=107 Identities=16% Similarity=0.142 Sum_probs=61.0
Q ss_pred HHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhH-HHHHHHhcCCCCC-CeEEEE-e-----------c--CChhHH
Q psy4522 136 HMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGP-LMVTEALKPYAVG-PRVHFV-S-----------N--IDGTHL 199 (560)
Q Consensus 136 ~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp-~~~~~al~~~~~~-~~~~f~-~-----------n--~Dp~~~ 199 (560)
.+...++.+++| ..|+++|.|+|..-+ .-+.+.+..+... ..++-+ . + -|++.-
T Consensus 38 av~~~~~~l~~g----------grl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~ 107 (257)
T cd05007 38 AVDAAAERLRAG----------GRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAG 107 (257)
T ss_pred HHHHHHHHHHcC----------CEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHH
Confidence 344556677765 369999999995422 2223333222211 112222 1 1 122222
Q ss_pred HHHHhhcC-CCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc-hhHHhc
Q psy4522 200 AEVLKKVN-PETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA-GKVAEF 263 (560)
Q Consensus 200 ~~~l~~l~-~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~-~~~~~~ 263 (560)
.+.+.... .++.++|++|.||.|.+++..++.+++ + +-..|+||.++ +.+.+.
T Consensus 108 ~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~----~-------Ga~~I~It~~~~s~L~~~ 162 (257)
T cd05007 108 AADLQAINLTERDVVIGIAASGRTPYVLGALRYARA----R-------GALTIGIACNPGSPLLQL 162 (257)
T ss_pred HHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHH----C-------CCeEEEEECCCCChhHHh
Confidence 33333222 466777999999999999987777664 3 34688998875 345443
No 53
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=95.84 E-value=0.1 Score=54.53 Aligned_cols=104 Identities=17% Similarity=0.134 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhH-HHHHHHhcCCCC-CCeEEEE------------ec-CCh-hHHH
Q psy4522 137 MKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGP-LMVTEALKPYAV-GPRVHFV------------SN-IDG-THLA 200 (560)
Q Consensus 137 i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp-~~~~~al~~~~~-~~~~~f~------------~n-~Dp-~~~~ 200 (560)
+..+++.+++| ..|+++|.|+|..=. .-+.+.+..+.. ...++.+ .+ -|. ....
T Consensus 52 v~~~~~~l~~g----------grI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~~ 121 (299)
T PRK05441 52 VDAAAAALRQG----------GRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGA 121 (299)
T ss_pred HHHHHHHHHCC----------CEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHHH
Confidence 45566677765 469999999995322 222232222211 1122222 11 122 2223
Q ss_pred HHHhh--cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCch-hHHh
Q psy4522 201 EVLKK--VNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAG-KVAE 262 (560)
Q Consensus 201 ~~l~~--l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~-~~~~ 262 (560)
+.+.. +. ++.++|++|.||+|.+++..++.+++ . +-..|+||.++. .+.+
T Consensus 122 ~~l~~~~l~-~~DvvI~IS~SG~T~~vi~al~~Ak~----~-------Ga~tI~IT~~~~s~La~ 174 (299)
T PRK05441 122 ADLKAINLT-AKDVVVGIAASGRTPYVIGALEYARE----R-------GALTIGISCNPGSPLSK 174 (299)
T ss_pred HHHHhcCCC-CCCEEEEEeCCCCCHHHHHHHHHHHH----C-------CCeEEEEECCCCChhhH
Confidence 33333 44 56678888999999999987777655 2 346889988754 4444
No 54
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=95.64 E-value=0.048 Score=55.24 Aligned_cols=88 Identities=17% Similarity=0.207 Sum_probs=57.6
Q ss_pred eEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHh
Q psy4522 159 DVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQ 238 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~ 238 (560)
.|.+.|.|+|..-++-+..-|... +..+.+++ |..........+ .++.++|++|.||.|.|++..++.+++
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l~~~--g~~~~~~~--~~~~~~~~~~~~-~~~d~~i~iS~sG~t~~~~~~~~~a~~---- 72 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATFAST--GTPSFFLH--PTEAMHGDLGMV-EPNDVVLMISYSGESLELLNLIPHLKR---- 72 (268)
T ss_pred cEEEEecChHHHHHHHHHHHHHhc--CCceEEeC--HhHHhhcccCCC-CCCCEEEEEeCCCCCHHHHHHHHHHHH----
Confidence 388999999987766665555322 45566653 222222222333 467899999999999999987777765
Q ss_pred cCCCcccccCeEEEEecCc-hhHHh
Q psy4522 239 HSKDPASVAKHFVALSTNA-GKVAE 262 (560)
Q Consensus 239 ~~~~~~~~~~h~vaVTt~~-~~~~~ 262 (560)
+ +-..|++|.+. +.+.+
T Consensus 73 ~-------g~~ii~iT~~~~s~l~~ 90 (268)
T TIGR00393 73 L-------SHKIIAFTGSPNSSLAR 90 (268)
T ss_pred c-------CCcEEEEECCCCCcccc
Confidence 2 33588998864 33443
No 55
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=95.57 E-value=0.1 Score=54.35 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCch-hHHh
Q psy4522 208 PETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAG-KVAE 262 (560)
Q Consensus 208 ~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~-~~~~ 262 (560)
.++-++|++|.||.|.+++..++.+++ + +-..|+||.++. .+.+
T Consensus 125 ~~~DvvI~IS~SG~T~~vi~al~~Ak~----~-------Ga~tIaIT~~~~s~La~ 169 (291)
T TIGR00274 125 TKNDVVVGIAASGRTPYVIAGLQYARS----L-------GALTISIACNPKSAASE 169 (291)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHH----C-------CCeEEEEECCCCChhHH
Confidence 356788889999999999987666654 3 346888988754 4444
No 56
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=95.54 E-value=0.17 Score=52.91 Aligned_cols=104 Identities=19% Similarity=0.154 Sum_probs=58.1
Q ss_pred HHHHHHHHcCcccccCCCCcCeEEEEcccCCchh-HHHHHHHhcCCCC-CCeEE-EEe-----------c--CChhHHHH
Q psy4522 138 KEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLG-PLMVTEALKPYAV-GPRVH-FVS-----------N--IDGTHLAE 201 (560)
Q Consensus 138 ~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LG-p~~~~~al~~~~~-~~~~~-f~~-----------n--~Dp~~~~~ 201 (560)
+.+++.+++| ..|+++|.|+|..- ..-..+....+.- ...+. ++. + -|++...+
T Consensus 49 ~~~~~~l~~g----------grl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~~ 118 (296)
T PRK12570 49 DKIVAAFKKG----------GRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAEDDPELGAQ 118 (296)
T ss_pred HHHHHHHHcC----------CeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccCCcHHHHHH
Confidence 3455667765 35999999999643 2222222211211 11222 111 1 12222333
Q ss_pred HHhhcC-CCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCch-hHHh
Q psy4522 202 VLKKVN-PETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAG-KVAE 262 (560)
Q Consensus 202 ~l~~l~-~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~-~~~~ 262 (560)
.+.... .++.++|++|.||.|.+++..++.+++ . +-..|++|.++. .+.+
T Consensus 119 ~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~----~-------Ga~~IaIT~~~~s~La~ 170 (296)
T PRK12570 119 DLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQ----I-------GATTIALSCNPDSPIAK 170 (296)
T ss_pred HHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHH----C-------CCeEEEEECCCCChhHH
Confidence 343333 467888999999999999987666654 3 345788887753 4443
No 57
>PRK02947 hypothetical protein; Provisional
Probab=95.01 E-value=0.17 Score=51.38 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc
Q psy4522 208 PETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA 257 (560)
Q Consensus 208 ~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~ 257 (560)
.+.-++|++|.||.|.|++..++.+++ + +-.+|+||.++
T Consensus 105 ~~~Dv~i~iS~sG~t~~~i~~~~~a~~----~-------g~~vI~iT~~~ 143 (246)
T PRK02947 105 RPGDVLIVVSNSGRNPVPIEMALEAKE----R-------GAKVIAVTSLA 143 (246)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH----C-------CCEEEEEcCCc
Confidence 466788899999999999987666654 3 34689998875
No 58
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=91.99 E-value=1.6 Score=40.11 Aligned_cols=85 Identities=20% Similarity=0.227 Sum_probs=47.2
Q ss_pred eEEEEcccCCch-hHHHHHHHhcCCC-CCCeEEEEe-cC------------ChhHHHHHHhh--cCCCCeEEEEEcCCCC
Q psy4522 159 DVVNIGIGGSDL-GPLMVTEALKPYA-VGPRVHFVS-NI------------DGTHLAEVLKK--VNPETVLFIVASKTFT 221 (560)
Q Consensus 159 ~vV~iGiGGS~L-Gp~~~~~al~~~~-~~~~~~f~~-n~------------Dp~~~~~~l~~--l~~~~Tl~iviSKSgt 221 (560)
.|.++|-|||.. +..++.++...+. ..+.++.+. +. |+.....+++. +.|.+. +|++|-||+
T Consensus 37 ~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gDv-li~iS~SG~ 115 (138)
T PF13580_consen 37 RIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDIRPGDV-LIVISNSGN 115 (138)
T ss_dssp -EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT--TT-E-EEEEESSS-
T ss_pred EEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCCCCCCE-EEEECCCCC
Confidence 599999999964 4456666654332 122232222 22 22344555555 555554 567889999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccCeEEEEec
Q psy4522 222 TQETITNATSAKNWFLQHSKDPASVAKHFVALST 255 (560)
Q Consensus 222 T~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt 255 (560)
|.=++..++.+++ + +-..|++|.
T Consensus 116 s~~vi~a~~~Ak~----~-------G~~vIalTg 138 (138)
T PF13580_consen 116 SPNVIEAAEEAKE----R-------GMKVIALTG 138 (138)
T ss_dssp SHHHHHHHHHHHH----T-------T-EEEEEEE
T ss_pred CHHHHHHHHHHHH----C-------CCEEEEEeC
Confidence 9999887777654 3 335677763
No 59
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=90.36 E-value=0.5 Score=53.56 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=56.4
Q ss_pred CcCeEEEEcccCCchhHHHHHHHhcCCCC-CCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy4522 156 PITDVVNIGIGGSDLGPLMVTEALKPYAV-GPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKN 234 (560)
Q Consensus 156 ~i~~vV~iGiGGS~LGp~~~~~al~~~~~-~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~ 234 (560)
.+++|.+++.|-|+-+..+....|..... ...+...+ ++..--..+. +++|+|.||.||.|.-|+..++.+++
T Consensus 282 ~~~rI~IvAcGTSYhAglv~ky~~E~la~ipv~Ve~aS-----Efry~~~~~~-~~~L~I~ISQSGETaDTl~ALr~ak~ 355 (597)
T COG0449 282 EVDRIIIVACGTSYHAGLVAKYFFERLAKIPVEVEEAS-----EFRYREPALN-PNTLVIAISQSGETADTLAALRLAKE 355 (597)
T ss_pred ccceEEEEECcHHHHHHHHHHHHHHHHhCCCeEEEeec-----hhhhhccCCC-CCcEEEEEccCcccHHHHHHHHHHHH
Confidence 58899999999999888777766654432 12233322 2222222233 45999999999999999987776654
Q ss_pred HHHhcCCCcccccCeEEEEecCc
Q psy4522 235 WFLQHSKDPASVAKHFVALSTNA 257 (560)
Q Consensus 235 ~l~~~~~~~~~~~~h~vaVTt~~ 257 (560)
. +-..++||...
T Consensus 356 ----~-------G~~tlaItNv~ 367 (597)
T COG0449 356 ----Q-------GAKTLAITNVP 367 (597)
T ss_pred ----c-------CCCEEEEEecC
Confidence 2 23567776553
No 60
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=82.81 E-value=7.2 Score=45.05 Aligned_cols=114 Identities=13% Similarity=0.135 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCC-CCeEE
Q psy4522 135 QHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNP-ETVLF 213 (560)
Q Consensus 135 ~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~-~~Tl~ 213 (560)
+.++++++.+.+ .++++++|.|.++- -+..-+|+ ...--.++...--+.+..+--+..+++ +.+.+
T Consensus 484 ~~~~~~a~~l~~----------a~~i~~lGrG~~~~--iA~E~ALK-LkEi~~i~ae~~~~~E~~HGp~ali~~~~~~~V 550 (640)
T PTZ00295 484 EQCKRIAEKLKN----------AKSMFILGKGLGYP--IALEGALK-IKEITYIHAEGFSGGALKHGPFALIDKEKNTPV 550 (640)
T ss_pred HHHHHHHHHHhC----------CCcEEEEECCCCHH--HHHHHHHH-HHHHhhhhhhhcChHHhhhhHHHHhcCCCCCeE
Confidence 356666776654 57899999998852 22233332 000001122111233334444455664 46766
Q ss_pred EEEcCCCC-CHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCchhHHhcccccCCeeeccC
Q psy4522 214 IVASKTFT-TQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKVAEFGIDTANMFGFWD 275 (560)
Q Consensus 214 iviSKSgt-T~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~~~~~~gi~~~~~f~~~d 275 (560)
|++|-+|. +.+++.+++.+++ . ..++|+||++++.+.... +.++.+|.
T Consensus 551 I~i~~~~~~~~~~~~~~~~lk~----r-------ga~vi~It~~~~~l~~~a---d~~i~ip~ 599 (640)
T PTZ00295 551 ILIILDDEHKELMINAAEQVKA----R-------GAYIIVITDDEDLVKDFA---DEIILIPS 599 (640)
T ss_pred EEEEcCCccHHHHHHHHHHHHH----c-------CCEEEEEecCCccccccC---CeEEEeCC
Confidence 66666666 6677766665544 2 458899987754332211 23677776
No 61
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=76.01 E-value=71 Score=30.84 Aligned_cols=95 Identities=18% Similarity=0.281 Sum_probs=57.0
Q ss_pred CeEEEEcccCCchhHHHHHH-HhcCCCC-CCeEEEEe-cCChhHH-------------HHHHhhcCCCCeEEEEEcCCCC
Q psy4522 158 TDVVNIGIGGSDLGPLMVTE-ALKPYAV-GPRVHFVS-NIDGTHL-------------AEVLKKVNPETVLFIVASKTFT 221 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~~~~~-al~~~~~-~~~~~f~~-n~Dp~~~-------------~~~l~~l~~~~Tl~iviSKSgt 221 (560)
..|+.+|-|||+--++-... .+..|.. .|.+.-+. ++|+..+ .+-++.+-.+--+++-+|-||+
T Consensus 42 ~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTSGN 121 (176)
T COG0279 42 NKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTSGN 121 (176)
T ss_pred CEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCCCC
Confidence 35999999999866544433 3333321 23333332 3455533 3334444456667889999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecC-chhHHhc
Q psy4522 222 TQETITNATSAKNWFLQHSKDPASVAKHFVALSTN-AGKVAEF 263 (560)
Q Consensus 222 T~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~-~~~~~~~ 263 (560)
..-.+..++.+++ + .-+.|+.|.+ +.+++.+
T Consensus 122 S~nVl~Ai~~Ak~----~-------gm~vI~ltG~~GG~~~~~ 153 (176)
T COG0279 122 SKNVLKAIEAAKE----K-------GMTVIALTGKDGGKLAGL 153 (176)
T ss_pred CHHHHHHHHHHHH----c-------CCEEEEEecCCCcccccc
Confidence 8888776666654 1 4478888765 4455544
No 62
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=63.42 E-value=58 Score=34.00 Aligned_cols=95 Identities=15% Similarity=0.201 Sum_probs=66.0
Q ss_pred CeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcC-----CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy4522 158 TDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVN-----PETVLFIVASKTFTTQETITNATSA 232 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~-----~~~Tl~iviSKSgtT~ETl~n~~~~ 232 (560)
+-|||-|+.|| |--.+.++|.. .-.+-+||+.|.-+.++++.+. .++.++++-..|+.-.+.+ ..+
T Consensus 2 ~~vIiTGlSGa--GKs~Al~~lED----~Gy~cvDNlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~---~~~ 72 (284)
T PF03668_consen 2 ELVIITGLSGA--GKSTALRALED----LGYYCVDNLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDL---FEA 72 (284)
T ss_pred eEEEEeCCCcC--CHHHHHHHHHh----cCeeEEcCCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHH---HHH
Confidence 35899999999 66666778863 4467789999998887776554 4688999999998755544 345
Q ss_pred HHHHHhcCCCcccccCeEEEEecCchhH-Hhcccc
Q psy4522 233 KNWFLQHSKDPASVAKHFVALSTNAGKV-AEFGID 266 (560)
Q Consensus 233 ~~~l~~~~~~~~~~~~h~vaVTt~~~~~-~~~gi~ 266 (560)
...+.+.+ +.-+++...++.+.+ +.|.-.
T Consensus 73 ~~~l~~~~-----~~~~ilFLdA~d~~LirRy~eT 102 (284)
T PF03668_consen 73 LDELRKKG-----IDVRILFLDASDEVLIRRYSET 102 (284)
T ss_pred HHHHHhcC-----CceEEEEEECChHHHHHHHHhc
Confidence 55555542 345778887776654 556433
No 63
>KOG1268|consensus
Probab=57.54 E-value=12 Score=41.77 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=40.9
Q ss_pred cCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy4522 157 ITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAK 233 (560)
Q Consensus 157 i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~ 233 (560)
-+.++.||-|-||-..-+...-|... .++.+.-.+-.+-+.+-..-. .+-.++++|.||.|..|+..++.++
T Consensus 355 ~rRli~iacgtSyhs~~A~R~ilEEL---~eiPV~vElAsDflDR~~pif--RdDvc~FvSqSGETaDtllaL~Yc~ 426 (670)
T KOG1268|consen 355 CRRLIMVACGTSYHSALATRPILEEL---SEIPVSVELASDFLDRNTPIF--RDDVCFFVSQSGETADTLLALRYCK 426 (670)
T ss_pred ccccEEEEecchHHHHHHHHHHHHHH---hcCCeeeehhhhhHhcCCCce--eccEEEEEecCCchHHHHHHHHHHH
Confidence 46699999999986665544444321 123333222222221111111 3455778899999999997555544
No 64
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=57.42 E-value=74 Score=31.52 Aligned_cols=116 Identities=12% Similarity=0.071 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHHHHHHHHc-------------CCCCCcccCCCcchhhHHHHHHHHHH
Q psy4522 73 MNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRN-------------LSNRPILVDCQDVTPAVNAVKQHMKE 139 (560)
Q Consensus 73 l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~lH~aLR~-------------~~~~~~~~~g~~~~~~v~~~~~~i~~ 139 (560)
++.|..+++...+..+-+.|. .| .+++..+++. ..+-.....|+.+.+.....++.+.+
T Consensus 2 l~~f~~v~~~gs~~~AA~~L~------is--qsavS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~~l~~~~~ 73 (279)
T TIGR03339 2 LKAFHAVARCGSFTRAAERLG------LS--QPTVTDQVRKLEERYGVELFHRNGRRLELTDAGHRLLPIVERLFQQEAE 73 (279)
T ss_pred chhhHHHHhcCCHHHHHHHhc------CC--chHHHHHHHHHHHHhCCccEEEcCCeEEEChhHHHHHHHHHHHHHHHHH
Confidence 456777888888888877775 22 1344444432 22222334577777777777777777
Q ss_pred HHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHH
Q psy4522 140 FSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVL 203 (560)
Q Consensus 140 fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l 203 (560)
+.+.+.+.. ......|.||+.++.+-+.++.+....+ ++.++.+.......-+..+.
T Consensus 74 ~~~~~~~~~------~~~~~~l~ig~~~~~~~~~~l~~~~~~~-p~v~l~i~~~~~~~~~~~l~ 130 (279)
T TIGR03339 74 AEFLLRESG------ALREGSLRIAATAPYYVLDLVARFRQRY-PGIEVSVRIGNSQEVLQALQ 130 (279)
T ss_pred HHHHHHHhc------cCcceEEEEeCchHHHHHHHHHHHHHHC-CCcEEEEEECCHHHHHHHHH
Confidence 777665421 1234578899987777676666555433 35677776543333343333
No 65
>COG1434 Uncharacterized conserved protein [Function unknown]
Probab=53.39 E-value=64 Score=31.45 Aligned_cols=90 Identities=13% Similarity=0.124 Sum_probs=48.5
Q ss_pred CeEEEEcccCC--chhHHHHHHH-hcCCCCCCeEEEEecCChhHHH-HHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy4522 158 TDVVNIGIGGS--DLGPLMVTEA-LKPYAVGPRVHFVSNIDGTHLA-EVLKKVNPETVLFIVASKTFTTQETITNATSAK 233 (560)
Q Consensus 158 ~~vV~iGiGGS--~LGp~~~~~a-l~~~~~~~~~~f~~n~Dp~~~~-~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~ 233 (560)
..||+.|-|+. .-+.+....+ +......+.+..=..+.+.... +.+....-...-++.--+|.+|. .|++..+
T Consensus 66 ~~iv~~Gg~~~~~~~~~rl~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~gv~~~~i~~e~~s~~T~---eNa~~s~ 142 (223)
T COG1434 66 DAIVVLGGGSRLTDHLIRLLEAARLAKILPISGVLESGGVIEIQATRRYLENLGVPAERIILEDRSRNTV---ENARFSR 142 (223)
T ss_pred CEEEEcccceecHHHHHHHHHHHHHHHhcCCcceeccCCcCccHHHHHHHHHcCCCcccEEecCCCccHH---HHHHHHH
Confidence 34555555442 2344444444 2222223444422334433332 55555555556667777877755 5666788
Q ss_pred HHHHhcCCCcccccCeEEEEecC
Q psy4522 234 NWFLQHSKDPASVAKHFVALSTN 256 (560)
Q Consensus 234 ~~l~~~~~~~~~~~~h~vaVTt~ 256 (560)
+++.+.. .++++.||++
T Consensus 143 ~~l~~~~------~~~~ilVTs~ 159 (223)
T COG1434 143 RLLRTQG------PESVILVTSP 159 (223)
T ss_pred HHHHHcC------CceEEEECCH
Confidence 8887652 5678888776
No 66
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=52.19 E-value=51 Score=30.21 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=25.1
Q ss_pred hHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc
Q psy4522 197 THLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA 257 (560)
Q Consensus 197 ~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~ 257 (560)
+.+.+.+....-....+++-.+|-+| ..|+..+++++.+.. -++++.||++-
T Consensus 57 ~~~~~~l~~~gvp~~~I~~e~~s~~T---~ena~~~~~~~~~~~------~~~iilVT~~~ 108 (155)
T PF02698_consen 57 EAMRDYLIELGVPEERIILEPKSTNT---YENARFSKRLLKERG------WQSIILVTSPY 108 (155)
T ss_dssp HHHHHHHHHT---GGGEEEE----SH---HHHHHHHHHHHHT-S------SS-EEEE--CC
T ss_pred HHHHHHHHhcccchheeEccCCCCCH---HHHHHHHHHHHHhhc------CCeEEEECCHH
Confidence 45556665444334456667777774 555567777777542 25788887764
No 67
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=50.59 E-value=1.5e+02 Score=30.31 Aligned_cols=161 Identities=22% Similarity=0.222 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhc-CCC-CCCeEEEEecCChhHHHHHHhhc-
Q psy4522 130 VNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALK-PYA-VGPRVHFVSNIDGTHLAEVLKKV- 206 (560)
Q Consensus 130 v~~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~-~~~-~~~~~~f~~n~Dp~~~~~~l~~l- 206 (560)
++...+++.+=.+++.+| ++..||++-|--|+. --.+..|+. .+. .++++.-|+.-|-.++.++++.|
T Consensus 32 ie~Qk~~l~~Nt~~Fl~G-------~pannvLL~G~rGtG--KSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~ 102 (249)
T PF05673_consen 32 IERQKEALIENTEQFLQG-------LPANNVLLWGARGTG--KSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLR 102 (249)
T ss_pred HHHHHHHHHHHHHHHHcC-------CCCcceEEecCCCCC--HHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHh
Confidence 344555565555666554 578899999888763 333333332 222 36788888765555555555554
Q ss_pred -CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCchhH-Hhccccc----CCeeeccCCCCCC
Q psy4522 207 -NPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKV-AEFGIDT----ANMFGFWDWVGGR 280 (560)
Q Consensus 207 -~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~~~-~~~gi~~----~~~f~~~d~VGGR 280 (560)
.|.++++.+-=-||..-|+- ++.++..|. - +-+....+-+|.+|+|.--+ .+.-.+. ..-+.-.|.+--+
T Consensus 103 ~~~~kFIlf~DDLsFe~~d~~--yk~LKs~Le-G-gle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEk 178 (249)
T PF05673_consen 103 DRPYKFILFCDDLSFEEGDTE--YKALKSVLE-G-GLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEK 178 (249)
T ss_pred cCCCCEEEEecCCCCCCCcHH--HHHHHHHhc-C-ccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHH
Confidence 47889988888999988885 345544432 2 22223456678888886443 2211111 1123344555566
Q ss_pred cccchhhhHHHHHhhCchhHHHHHh
Q psy4522 281 YSLWSAIGLSIALNIGYNNFERLLA 305 (560)
Q Consensus 281 fSv~SavGL~~a~~~G~d~~~~lL~ 305 (560)
-|+.--+||.+. +--+|. ++.|+
T Consensus 179 lSLsDRFGL~l~-F~~~~q-~~YL~ 201 (249)
T PF05673_consen 179 LSLSDRFGLWLS-FYPPDQ-EEYLA 201 (249)
T ss_pred HhHHHhCCcEEE-ecCCCH-HHHHH
Confidence 666666676543 234452 55554
No 68
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=47.89 E-value=44 Score=34.94 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=24.1
Q ss_pred eEEEEcccCCchhHHHHHHHhcCCCCCCeEEEE-ecCChhHHH
Q psy4522 159 DVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFV-SNIDGTHLA 200 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~-~n~Dp~~~~ 200 (560)
.|.+||+||. |..++-...+... ..+.|+ -|+|...+.
T Consensus 2 ~i~viGvGg~--G~n~v~~l~~~~~--~~~~~~a~ntD~~~L~ 40 (304)
T cd02201 2 KIKVIGVGGG--GGNAVNRMIESGL--EGVEFIAANTDAQALA 40 (304)
T ss_pred eEEEEEeCCc--HHHHHHHHHHcCC--CCceEEEEECCHHHHh
Confidence 4889999997 7887766554322 234454 367865554
No 69
>PF01339 CheB_methylest: CheB methylesterase; InterPro: IPR000673 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the signal transduction response regulator CheB involved in chemotaxis. CheB methylesterase is responsible for removing the methyl group from the gamma-glutamyl methyl ester residues in the methyl-accepting chemotaxis proteins (MCP). The enzyme catalyses the reaction: protein L-glutamate O-methyl ester and water is converted to protein L-glutamate and methanol. CheB is regulated through phosphorylation by CheA. The N-terminal region of the protein is similar to that of other regulatory components of sensory transduction systems. The Myxococcus xanthus FrzG protein also belongs to this family, and is required for the normal aggregation of cells during fruiting body formation.; GO: 0000156 two-component response regulator activity, 0008984 protein-glutamate methylesterase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1CHD_A 1A2O_B 3SFT_A.
Probab=47.87 E-value=9.3 Score=37.00 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=34.0
Q ss_pred EEcccCCchhHHHHHHHhcCCCC--CCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCC
Q psy4522 162 NIGIGGSDLGPLMVTEALKPYAV--GPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFT 221 (560)
Q Consensus 162 ~iGiGGS~LGp~~~~~al~~~~~--~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgt 221 (560)
+|+||+|.=||+++.+.|..... ...+.++-.+++.....+.+.|+..+.+=|..-+.|.
T Consensus 1 vV~IGaSaGG~~al~~il~~lp~~~~~~ivivqH~~~~~~~~l~~~L~~~t~l~V~~a~~g~ 62 (182)
T PF01339_consen 1 VVAIGASAGGPEALQEILSALPADFPAAIVIVQHMPPGFTSSLAERLARHTSLPVREAEDGE 62 (182)
T ss_dssp EEEEEE-TTHHHHHCCCHCCS-TTSSSEEEEEE---TTHHHHHHHHHHHHSSSEEEE--TT-
T ss_pred CEEEEeCCCCHHHHHHHHHHhccCCCceEEEEECCCCCcchHHHHHHhCcCCCeEEEcCCCC
Confidence 58899999999999888865433 2345555567777655555555544555555545554
No 70
>PRK13018 cell division protein FtsZ; Provisional
Probab=46.97 E-value=59 Score=35.34 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=25.1
Q ss_pred eEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEe-cCChhHHH
Q psy4522 159 DVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVS-NIDGTHLA 200 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~-n~Dp~~~~ 200 (560)
.|.|||+||. |..++-..+.... ..+.|+. |+|...+.
T Consensus 30 ~I~ViGvGGa--G~N~v~~m~~~~~--~~v~~iaiNTD~q~L~ 68 (378)
T PRK13018 30 KIVVVGCGGA--GNNTINRLYEIGI--EGAETIAINTDAQHLA 68 (378)
T ss_pred eEEEEEeCCc--HHHHHHHHHHcCC--CCceEEEEECCHHHHh
Confidence 5999999997 8888777654321 2255553 78974443
No 71
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=46.56 E-value=2.4e+02 Score=25.97 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=49.6
Q ss_pred eEEEEcccC--CchhHHHHHHHhcCCCCCCeEEEEe-cCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy4522 159 DVVNIGIGG--SDLGPLMVTEALKPYAVGPRVHFVS-NIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNW 235 (560)
Q Consensus 159 ~vV~iGiGG--S~LGp~~~~~al~~~~~~~~~~f~~-n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~ 235 (560)
.||+..+|| -++|-.++...|+. .+.+++++. ++.++.+.+...+.+++ ++.+++-++++.+.+ +...+-
T Consensus 5 ~vl~~~~~gD~H~lG~~iv~~~lr~--~G~eVi~LG~~vp~e~i~~~a~~~~~d--~V~lS~~~~~~~~~~---~~~~~~ 77 (137)
T PRK02261 5 TVVLGVIGADCHAVGNKILDRALTE--AGFEVINLGVMTSQEEFIDAAIETDAD--AILVSSLYGHGEIDC---RGLREK 77 (137)
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHH--CCCEEEECCCCCCHHHHHHHHHHcCCC--EEEEcCccccCHHHH---HHHHHH
Confidence 355555554 37899998888874 368899995 79999999998887653 444455566554444 344455
Q ss_pred HHhc
Q psy4522 236 FLQH 239 (560)
Q Consensus 236 l~~~ 239 (560)
+.+.
T Consensus 78 L~~~ 81 (137)
T PRK02261 78 CIEA 81 (137)
T ss_pred HHhc
Confidence 5544
No 72
>PRK03601 transcriptional regulator HdfR; Provisional
Probab=44.42 E-value=2.2e+02 Score=28.50 Aligned_cols=118 Identities=11% Similarity=0.177 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHHHHHHHH-------------cCCCCCcccCCCcchhhHHHHHH
Q psy4522 69 DDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALR-------------NLSNRPILVDCQDVTPAVNAVKQ 135 (560)
Q Consensus 69 ~~~~l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~lH~aLR-------------~~~~~~~~~~g~~~~~~v~~~~~ 135 (560)
|-..++.|..++++..+..+-+.|+ .| .+++...++ ...+-.....|+.+.+.+...++
T Consensus 2 ~~~~l~~f~~v~~~gs~s~AA~~L~------is--qpavS~~I~~LE~~lG~~LF~R~~r~~~lT~~G~~l~~~a~~~l~ 73 (275)
T PRK03601 2 DTELLKTFLEVSRTRHFGRAAESLY------LT--QSAVSFRIRQLENQLGVNLFTRHRNNIRLTAAGERLLPYAETLMN 73 (275)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHhC------CC--hHHHHHHHHHHHHHhCCceEEECCCceEECHhHHHHHHHHHHHHH
Confidence 4467889999999999999988876 22 244454443 22222233457777778888888
Q ss_pred HHHHHHHHHHcCcccccCCCCcCeEEEEcccCC---chhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHH
Q psy4522 136 HMKEFSEQVISQKWLGYTGKPITDVVNIGIGGS---DLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVL 203 (560)
Q Consensus 136 ~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS---~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l 203 (560)
++.++.+++.+.. ...-|.||+..+ .+.|.++..+.+.+ ++.++.+....+.+-+..+.
T Consensus 74 ~~~~~~~~~~~~~--------~~~~l~Ig~~~~~~~~~l~~~l~~f~~~~-P~v~v~~~~~~~~~~~~~l~ 135 (275)
T PRK03601 74 TWQAAKKEVAHTS--------QHNELSIGASASLWECMLTPWLGRLYQNQ-EALQFEARIAQRQSLVKQLH 135 (275)
T ss_pred HHHHHHHHHhhcc--------cCceEEEeccHHHHHHHHHHHHHHHHHhC-CCcEEEEEECChHHHHHHHH
Confidence 8888888776532 123567777654 34555555544333 35667776655544444444
No 73
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=42.71 E-value=82 Score=33.03 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=24.7
Q ss_pred eEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEe-cCChhHHH
Q psy4522 159 DVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVS-NIDGTHLA 200 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~-n~Dp~~~~ 200 (560)
.|.+||+||- |..++-........ .+.|+. |+|..++.
T Consensus 2 ~i~viGvGg~--G~n~v~~~~~~~~~--~~~~iainTd~~~L~ 40 (303)
T cd02191 2 KIAVIGFGGA--GGNIVDKFLEYDKE--GRSAVAVNTDAQDLL 40 (303)
T ss_pred EEEEEEECch--HHHHHHHHHHcCCC--CccEEEEECcHHHHh
Confidence 4789999997 88887776643212 244543 78965554
No 74
>PRK10837 putative DNA-binding transcriptional regulator; Provisional
Probab=42.32 E-value=2.4e+02 Score=28.07 Aligned_cols=118 Identities=13% Similarity=0.100 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHHHHHHHH-------------cCCCCCcccCCCcchhhHHHH
Q psy4522 67 RIDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALR-------------NLSNRPILVDCQDVTPAVNAV 133 (560)
Q Consensus 67 ~i~~~~l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~lH~aLR-------------~~~~~~~~~~g~~~~~~v~~~ 133 (560)
++|-..++.|..+++...+..+-++++- | .+++...++ .+.+-..+..|+.+.+.+...
T Consensus 2 ~m~l~~L~~f~~v~e~~s~t~AA~~L~i------s--qpavS~~I~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~~~a~~~ 73 (290)
T PRK10837 2 HITLRQLEVFAEVLKSGSTTQASVMLAL------S--QSAVSAALTDLEGQLGVQLFDRVGKRLVVNEHGRLLYPRALAL 73 (290)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHhCC------C--ccHHHHHHHHHHHHhCCccEeecCCeEEECHhHHHHHHHHHHH
Confidence 4677889999999999999999888872 2 134444443 222222334577777777777
Q ss_pred HHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCc---hhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHH
Q psy4522 134 KQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSD---LGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVL 203 (560)
Q Consensus 134 ~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~---LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l 203 (560)
++.++++.+..+ + ....|.||+..+. +-+.++......+ ++.++.+......+.+..+.
T Consensus 74 l~~~~~~~~~~~-~---------~~g~l~i~~~~~~~~~~~~~~l~~~~~~~-P~i~i~v~~~~~~~~~~~l~ 135 (290)
T PRK10837 74 LEQAVEIEQLFR-E---------DNGALRIYASSTIGNYILPAMIARYRRDY-PQLPLELSVGNSQDVINAVL 135 (290)
T ss_pred HHHHHHHHHHHH-h---------hCCeEEEEecchhHhhhhHHHHHHHHHHC-CCceEEEEECCHHHHHHHHH
Confidence 777776654432 1 2346778888763 2344444433332 34555555433333333333
No 75
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=41.91 E-value=1.5e+02 Score=26.83 Aligned_cols=87 Identities=9% Similarity=0.119 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCc-hhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCC
Q psy4522 132 AVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSD-LGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPET 210 (560)
Q Consensus 132 ~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~-LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~ 210 (560)
....|+..-++..++|. ...||+.|-.+.. .- ..+..+.+.+.......
T Consensus 18 ~~~~R~~~a~~l~~~~~--------~~~ii~sGg~~~~~~~----------------------~ea~~m~~~l~~~gv~~ 67 (150)
T cd06259 18 ILAERLDAAAELYRAGP--------APKLIVSGGQGPGEGY----------------------SEAEAMARYLIELGVPA 67 (150)
T ss_pred HHHHHHHHHHHHHHhCC--------CCEEEEcCCCCCCCCC----------------------CHHHHHHHHHHHcCCCH
Confidence 46678888888787762 4556665554432 00 01222222222222112
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc
Q psy4522 211 VLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA 257 (560)
Q Consensus 211 Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~ 257 (560)
.-+++-.+|-+ |..|+..+++|+.+.. .++++.||++-
T Consensus 68 ~~I~~e~~s~~---T~ena~~~~~~~~~~~------~~~i~lVTs~~ 105 (150)
T cd06259 68 EAILLEDRSTN---TYENARFSAELLRERG------IRSVLLVTSAY 105 (150)
T ss_pred HHeeecCCCCC---HHHHHHHHHHHHHhcC------CCeEEEECCHH
Confidence 23445557777 5555667888887653 25788887664
No 76
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=41.35 E-value=55 Score=35.06 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=28.2
Q ss_pred eEEEEcccCCchhHHHHHHHhcCCCCC-----CeEEEEecCChhHHHHHHh
Q psy4522 159 DVVNIGIGGSDLGPLMVTEALKPYAVG-----PRVHFVSNIDGTHLAEVLK 204 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~al~~~~~~-----~~~~f~~n~Dp~~~~~~l~ 204 (560)
.|.+||+||- |..++-..++...+. ++..++ |+|+..+..+..
T Consensus 2 ~i~viGvGg~--G~niv~~l~~~~~~~~~~~~~~~iav-ntD~~~L~~l~~ 49 (349)
T cd02202 2 RVLIIGVGQA--GGRIVDALNRHDKRSGFGYCVGALAI-NTAKNDLKGLKH 49 (349)
T ss_pred EEEEEEeCCc--HHHHHHHHHHhCCCcCCccceeEEEE-ECCHHHHHhhhc
Confidence 3789999997 888877665432111 444444 589888876643
No 77
>CHL00180 rbcR LysR transcriptional regulator; Provisional
Probab=41.20 E-value=2.6e+02 Score=28.48 Aligned_cols=112 Identities=13% Similarity=0.145 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHHHHHHHHc-------------CCCCCcccCCCcchhhHHH
Q psy4522 66 NRIDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRN-------------LSNRPILVDCQDVTPAVNA 132 (560)
Q Consensus 66 q~i~~~~l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~lH~aLR~-------------~~~~~~~~~g~~~~~~v~~ 132 (560)
.++|-..|+.|..+++...+..+-++|+ .| .+++..++|. ..+-.....|..+.+....
T Consensus 3 ~~~~l~~L~~f~~v~e~gs~s~AA~~L~------is--qpavS~~i~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~~~a~~ 74 (305)
T CHL00180 3 LPFTLDQLRILKAIATEGSFKKAAESLY------IS--QPAVSLQIKNLEKQLNIPLFDRSKNKASLTEAGELLLRYGNR 74 (305)
T ss_pred CcccHHHHHHHHHHHHcCCHHHHHHHhc------CC--ChHHHHHHHHHHHHhCCEEEEecCCCceECHhHHHHHHHHHH
Confidence 3577788999999999999999988887 22 2445555542 2222233457777777777
Q ss_pred HHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCc---hhHHHHHHHhcCCCCCCeEEEEe
Q psy4522 133 VKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSD---LGPLMVTEALKPYAVGPRVHFVS 192 (560)
Q Consensus 133 ~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~---LGp~~~~~al~~~~~~~~~~f~~ 192 (560)
.+..+.++.+.+++-. + .....|.||+..|. +.+.++.+....+ +..++.+..
T Consensus 75 ll~~~~~~~~~~~~~~-----~-~~~g~l~ig~~~~~~~~~~~~~l~~~~~~~-P~v~i~~~~ 130 (305)
T CHL00180 75 ILALCEETCRALEDLK-----N-LQRGTLIIGASQTTGTYLMPRLIGLFRQRY-PQINVQLQV 130 (305)
T ss_pred HHHHHHHHHHHHHHhh-----c-ccCceEEEEEcCcchHhHHHHHHHHHHHHC-CCceEEEEe
Confidence 7777777777765421 1 13446788888663 4455554444332 345555544
No 78
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=40.86 E-value=70 Score=31.65 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=33.6
Q ss_pred cCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcC------------CCCeEEEEEcCCCCCHH
Q psy4522 157 ITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVN------------PETVLFIVASKTFTTQE 224 (560)
Q Consensus 157 i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~------------~~~Tl~iviSKSgtT~E 224 (560)
++.||+.||||- |=.+.+.+......+..++..-.|.++..+.+.|.... ..=--++++++++...+
T Consensus 67 ~d~ivIAGMGG~-lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~~~~~ 145 (205)
T PF04816_consen 67 VDTIVIAGMGGE-LIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGEEKPE 145 (205)
T ss_dssp --EEEEEEE-HH-HHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESSS---
T ss_pred CCEEEEecCCHH-HHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCCCCCC
Confidence 678999999996 23333332221111123444446888888888887642 12223667777777653
No 79
>PRK09330 cell division protein FtsZ; Validated
Probab=39.70 E-value=1e+02 Score=33.63 Aligned_cols=37 Identities=32% Similarity=0.531 Sum_probs=23.7
Q ss_pred eEEEEcccCCchhHHHHHHHhcCCCCCCeEEEE-ecCChhHH
Q psy4522 159 DVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFV-SNIDGTHL 199 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~-~n~Dp~~~ 199 (560)
.|.|||+||. |..++-+.......+ +.|+ -|+|...+
T Consensus 15 ~IkViGvGG~--G~Nav~~m~~~~~~~--v~fia~NTD~q~L 52 (384)
T PRK09330 15 VIKVIGVGGG--GGNAVNRMIEEGIQG--VEFIAANTDAQAL 52 (384)
T ss_pred eEEEEEECCc--HHHHHHHHHHcCCCC--ceEEEEeCcHHHH
Confidence 5899999997 777777765432222 4454 37786433
No 80
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=39.56 E-value=56 Score=31.77 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=35.5
Q ss_pred eEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEe---cCChhHHHHHHh-------hcCCCCeEEEEE
Q psy4522 159 DVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVS---NIDGTHLAEVLK-------KVNPETVLFIVA 216 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~---n~Dp~~~~~~l~-------~l~~~~Tl~ivi 216 (560)
++|++|.+|+...-..+.+.+... ...+.+++ |.+++.+.+-+. .-.|++-+++|.
T Consensus 35 ~~iNLGfsG~~~le~~~a~~ia~~--~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 35 DVINLGFSGNGKLEPEVADLIAEI--DADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp EEEEEE-TCCCS--HHHHHHHHHS----SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred CeEeeeecCccccCHHHHHHHhcC--CCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 699999999999888888888654 24677775 888886665543 335665555554
No 81
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=39.20 E-value=1.9e+02 Score=25.25 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=43.1
Q ss_pred CchhHHHHHHHhcCCCCCCeEEEEe-cCChhHHHHHHhhcCCCCeEEEEEcCC-CCCHHHHHHHHHHHHHHHhc
Q psy4522 168 SDLGPLMVTEALKPYAVGPRVHFVS-NIDGTHLAEVLKKVNPETVLFIVASKT-FTTQETITNATSAKNWFLQH 239 (560)
Q Consensus 168 S~LGp~~~~~al~~~~~~~~~~f~~-n~Dp~~~~~~l~~l~~~~Tl~iviSKS-gtT~ETl~n~~~~~~~l~~~ 239 (560)
-.+|.+++...|+.. +.++.++. ++.++.+.+.+.+.+|. +|++|-| +.+.+.+ ....+-+++.
T Consensus 12 H~lG~~~~~~~l~~~--G~~V~~lg~~~~~~~l~~~~~~~~pd---vV~iS~~~~~~~~~~---~~~i~~l~~~ 77 (119)
T cd02067 12 HDIGKNIVARALRDA--GFEVIDLGVDVPPEEIVEAAKEEDAD---AIGLSGLLTTHMTLM---KEVIEELKEA 77 (119)
T ss_pred hhHHHHHHHHHHHHC--CCEEEECCCCCCHHHHHHHHHHcCCC---EEEEeccccccHHHH---HHHHHHHHHc
Confidence 468999999998743 67888884 78888888888887665 5555555 5555544 3334444443
No 82
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=39.02 E-value=85 Score=33.29 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=32.2
Q ss_pred CchhHHHHHHHhcCCCCCCeEEEEe------cCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhc
Q psy4522 168 SDLGPLMVTEALKPYAVGPRVHFVS------NIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQH 239 (560)
Q Consensus 168 S~LGp~~~~~al~~~~~~~~~~f~~------n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~ 239 (560)
+.+...+..+++.. .+.+..|+| ++||+.+.+. +.+++-+|+++.--|...+. ..+.++-.++
T Consensus 71 p~~t~~~~~~ai~~--~G~~pv~~Di~~~~~~id~~~~~~~---i~~~t~ai~~~h~~G~~~d~----~~i~~~~~~~ 139 (363)
T PF01041_consen 71 PAYTFPATASAILW--AGAEPVFVDIDPETLNIDPEALEKA---ITPKTKAILVVHLFGNPADM----DAIRAIARKH 139 (363)
T ss_dssp ESSS-THHHHHHHH--TT-EEEEE-BETTTSSB-HHHHHHH---HHTTEEEEEEE-GGGB---H----HHHHHHHHHT
T ss_pred CCCcchHHHHHHHH--hccEEEEEeccCCcCCcCHHHHHHH---hccCccEEEEecCCCCcccH----HHHHHHHHHc
Confidence 44455555555532 257788886 3666666655 44566777777777776643 3455544433
No 83
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.01 E-value=30 Score=27.16 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCC
Q psy4522 492 FTLGALIAMYEHKIFVQGIIWDINSY 517 (560)
Q Consensus 492 ~~LG~Lia~yE~~t~v~g~l~gINpF 517 (560)
.++=.|+.+||..+ -+||||
T Consensus 35 envk~ll~lYE~Vs------~~iNPF 54 (55)
T PF05377_consen 35 ENVKDLLSLYEVVS------NQINPF 54 (55)
T ss_pred HHHHHHHHHHHHHH------ccCCCC
Confidence 56678999999866 599999
No 84
>PRK11074 putative DNA-binding transcriptional regulator; Provisional
Probab=38.96 E-value=3.6e+02 Score=27.32 Aligned_cols=110 Identities=8% Similarity=0.114 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHHHHHHHH-------------cCCCCCcccCCCcchhhHHHHH
Q psy4522 68 IDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALR-------------NLSNRPILVDCQDVTPAVNAVK 134 (560)
Q Consensus 68 i~~~~l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~lH~aLR-------------~~~~~~~~~~g~~~~~~v~~~~ 134 (560)
++-+.|..|..+++...+..+-+.|+ .| ++++-.+++ ...+-..+..|..+.+.+...+
T Consensus 2 ~~~~~L~~f~~v~e~~s~s~AA~~L~------is--QpavS~~I~~LE~~lg~~LF~R~~r~~~lT~~G~~l~~~~~~~l 73 (300)
T PRK11074 2 WSEYSLEVVDAVARTGSFSAAAQELH------RV--PSAVSYTVRQLEEWLAVPLFERRHRDVELTPAGEWFVKEARSVI 73 (300)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHhC------CC--HHHHHHHHHHHHHHhCCeeEEeCCCCceECccHHHHHHHHHHHH
Confidence 46678999999999999999988876 22 244444443 2222223345777777777777
Q ss_pred HHHHHHHHHHHcCcccccCCCCcCeEEEEcccCC---chhHHHHHHHhcCCCCCCeEEEEe
Q psy4522 135 QHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGS---DLGPLMVTEALKPYAVGPRVHFVS 192 (560)
Q Consensus 135 ~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS---~LGp~~~~~al~~~~~~~~~~f~~ 192 (560)
..+.++.+.+++-. +.....|-||+..+ ++.|.++..+...+ +..++.+..
T Consensus 74 ~~~~~~~~~~~~~~------~~~~g~l~Ig~~~~~~~~~l~~~l~~~~~~~-p~i~i~i~~ 127 (300)
T PRK11074 74 KKMQETRRQCQQVA------NGWRGQLSIAVDNIVRPDRTRQLIVDFYRHF-DDVELIIRQ 127 (300)
T ss_pred HHHHHHHHHHHHHh------cCCCceEEEEEcCccchhHHHHHHHHHHHhC-CCceEEEEe
Confidence 77777776665311 12344678887644 45566665555443 245555554
No 85
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=38.42 E-value=1.2e+02 Score=28.71 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCcc---cccCCCCcC--eEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChh----------
Q psy4522 133 VKQHMKEFSEQVISQKW---LGYTGKPIT--DVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGT---------- 197 (560)
Q Consensus 133 ~~~~i~~fa~~ir~g~~---~g~~g~~i~--~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~---------- 197 (560)
...++.+..+.+++|.| ....+..+. +|-+||.|.. |-.+ .+.++++ +.++++.+.....
T Consensus 7 ~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~I--G~~v-A~~l~~f--G~~V~~~d~~~~~~~~~~~~~~~ 81 (178)
T PF02826_consen 7 LLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRI--GRAV-ARRLKAF--GMRVIGYDRSPKPEEGADEFGVE 81 (178)
T ss_dssp HHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHH--HHHH-HHHHHHT--T-EEEEEESSCHHHHHHHHTTEE
T ss_pred HHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCC--cCeE-eeeeecC--CceeEEecccCChhhhcccccce
Confidence 44566677778888888 666665554 6999999864 4443 4444444 5788888743322
Q ss_pred --HHHHHHhhcCCCCeEEEEEcCCCCCHH
Q psy4522 198 --HLAEVLKKVNPETVLFIVASKTFTTQE 224 (560)
Q Consensus 198 --~~~~~l~~l~~~~Tl~iviSKSgtT~E 224 (560)
.+.++++. .+.+++.+.-|-.|..
T Consensus 82 ~~~l~ell~~---aDiv~~~~plt~~T~~ 107 (178)
T PF02826_consen 82 YVSLDELLAQ---ADIVSLHLPLTPETRG 107 (178)
T ss_dssp ESSHHHHHHH----SEEEE-SSSSTTTTT
T ss_pred eeehhhhcch---hhhhhhhhccccccce
Confidence 34444444 3466666665444443
No 86
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=38.13 E-value=3.7e+02 Score=26.17 Aligned_cols=124 Identities=18% Similarity=0.232 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHcCcccccCCCCcCeEEEEcc-cCCchhHHHHHHHhcCCCCCCeEEEE--ecC----ChhHHHHHH
Q psy4522 131 NAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGI-GGSDLGPLMVTEALKPYAVGPRVHFV--SNI----DGTHLAEVL 203 (560)
Q Consensus 131 ~~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGi-GGS~LGp~~~~~al~~~~~~~~~~f~--~n~----Dp~~~~~~l 203 (560)
++.-+++++++++|.+. + .| ++.+++|+ .||-.=.--+..++. -.+++-|+ ++. .+....+++
T Consensus 15 e~I~~ri~ela~~I~~~-y---~g---~~~~vv~iLkGs~~F~~dL~r~i~---~~~e~dFm~vSSYg~~t~ssg~v~i~ 84 (178)
T COG0634 15 EQIKARIKELAAQITED-Y---GG---KDPLVVGVLKGSFPFMADLIRAID---FPLEVDFMHVSSYGGGTSSSGEVKIL 84 (178)
T ss_pred HHHHHHHHHHHHHHHHh-h---CC---CceEEEEEcccchhhHHHHHHhcC---CCceeEEEEEeccCCCcccCCceEEe
Confidence 34667999999998763 2 33 56777775 677544444445553 13455554 332 222222333
Q ss_pred hh----cCCCCeEEEE-EcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCchhHHhcccccCC-eeeccC
Q psy4522 204 KK----VNPETVLFIV-ASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKVAEFGIDTAN-MFGFWD 275 (560)
Q Consensus 204 ~~----l~~~~Tl~iv-iSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~~~~~~gi~~~~-~f~~~d 275 (560)
+. +..++.|+|= |=-||.|+. .++++|+.++. +.--+|+--+...-++..++.+- -|.+||
T Consensus 85 kDld~di~grdVLiVeDIiDsG~TLs------~i~~~l~~r~a-----~sv~i~tLldK~~~r~~~i~~DyvGf~vPd 151 (178)
T COG0634 85 KDLDEDIKGRDVLIVEDIIDSGLTLS------KVRDLLKERGA-----KSVRIATLLDKPERRKVDIEADYVGFEVPD 151 (178)
T ss_pred cccccCCCCCeEEEEecccccChhHH------HHHHHHHhCCC-----CeEEEEEEeeCcccccCCCCcceEeeecCC
Confidence 33 3345555441 337787654 46788876532 22223322333333444455432 377776
No 87
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=37.80 E-value=2.9e+02 Score=24.49 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=41.8
Q ss_pred chhHHHHHHHhcCCCCCCeEEEEe-cCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhc
Q psy4522 169 DLGPLMVTEALKPYAVGPRVHFVS-NIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQH 239 (560)
Q Consensus 169 ~LGp~~~~~al~~~~~~~~~~f~~-n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~ 239 (560)
.+|-.++...|+. .+.+++++. ++.++.+.+...+.+|. .+.++|-..++.|. ++...+-+++.
T Consensus 13 ~lG~~~~~~~l~~--~G~~vi~lG~~vp~e~~~~~a~~~~~d--~V~iS~~~~~~~~~---~~~~~~~L~~~ 77 (122)
T cd02071 13 DRGAKVIARALRD--AGFEVIYTGLRQTPEEIVEAAIQEDVD--VIGLSSLSGGHMTL---FPEVIELLREL 77 (122)
T ss_pred HHHHHHHHHHHHH--CCCEEEECCCCCCHHHHHHHHHHcCCC--EEEEcccchhhHHH---HHHHHHHHHhc
Confidence 6899999988874 367899995 78889888888876553 33333344444433 34555555554
No 88
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=37.73 E-value=3.3e+02 Score=25.14 Aligned_cols=65 Identities=9% Similarity=0.000 Sum_probs=48.0
Q ss_pred chhHHHHHHHhcCCCCCCeEEEEe-cCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcC
Q psy4522 169 DLGPLMVTEALKPYAVGPRVHFVS-NIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHS 240 (560)
Q Consensus 169 ~LGp~~~~~al~~~~~~~~~~f~~-n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~ 240 (560)
+.|...+..+|+.. +.++..+. .+.|+.+.+...+-++ -++-++|..++|.+-+. .+.+.|.+++
T Consensus 15 diGk~iv~~~l~~~--GfeVi~LG~~v~~e~~v~aa~~~~a--diVglS~l~~~~~~~~~---~~~~~l~~~g 80 (134)
T TIGR01501 15 AVGNKILDHAFTNA--GFNVVNLGVLSPQEEFIKAAIETKA--DAILVSSLYGHGEIDCK---GLRQKCDEAG 80 (134)
T ss_pred hHhHHHHHHHHHHC--CCEEEECCCCCCHHHHHHHHHHcCC--CEEEEecccccCHHHHH---HHHHHHHHCC
Confidence 67888888888753 67888885 6899999888777554 36677888888877664 4556566554
No 89
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.03 E-value=3e+02 Score=25.12 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=46.0
Q ss_pred cCCchhHHHHHHHhcCCCCCCeEEEEe-cCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcC
Q psy4522 166 GGSDLGPLMVTEALKPYAVGPRVHFVS-NIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHS 240 (560)
Q Consensus 166 GGS~LGp~~~~~al~~~~~~~~~~f~~-n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~ 240 (560)
-+=+.|...+..+|+.. +.++..+. .++|+.+.+...+-+ -..+.++|..++|.|.+ ..+.+-|.+++
T Consensus 13 D~Hd~g~~iv~~~l~~~--GfeVi~lg~~~s~e~~v~aa~e~~--adii~iSsl~~~~~~~~---~~~~~~L~~~g 81 (132)
T TIGR00640 13 DGHDRGAKVIATAYADL--GFDVDVGPLFQTPEEIARQAVEAD--VHVVGVSSLAGGHLTLV---PALRKELDKLG 81 (132)
T ss_pred CccHHHHHHHHHHHHhC--CcEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCchhhhHHHH---HHHHHHHHhcC
Confidence 34478999999998753 56777775 577888877766533 35667777777777665 46666666653
No 90
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=37.01 E-value=2.9e+02 Score=30.42 Aligned_cols=30 Identities=3% Similarity=0.090 Sum_probs=22.6
Q ss_pred CceEEEEeChhhHHhHHHHHhHhhhHhcCc
Q psy4522 340 SETHALLPYDQYLHRFAAYFQQGDMESNGK 369 (560)
Q Consensus 340 ~~~~~l~~Y~~~L~~l~~w~qQL~~ES~GK 369 (560)
.....+=...+..+.++.|+.+-...+.|+
T Consensus 305 p~vTlmRtt~eE~~~~g~~ia~kLn~~~gp 334 (403)
T PF06792_consen 305 PQVTLMRTTPEENRQLGEFIAEKLNRAKGP 334 (403)
T ss_pred CceeEeeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 345566667778899999998887777765
No 91
>PRK13529 malate dehydrogenase; Provisional
Probab=37.00 E-value=7e+02 Score=28.69 Aligned_cols=135 Identities=22% Similarity=0.290 Sum_probs=74.7
Q ss_pred CcCccccceEEecCCC---CCCCeEEeccCCCCCHHHHHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHH---HH--HH
Q psy4522 39 DPARFEKFSLTIPTPG---DEGNILIDFSKNRIDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAV---LH--VA 110 (560)
Q Consensus 39 d~~R~~~~s~~~~~~~---~~~gl~lD~Skq~i~~~~l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~---lH--~a 110 (560)
||.|+=-..+..-++. =.+.+|+=+-+.|++.+..+.|.+ .+-+.....|-.-.||+ |+-+. .. ..
T Consensus 186 ~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~d-----efv~av~~~~P~~~I~~-EDf~~~~af~iL~r 259 (563)
T PRK13529 186 DPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVD-----EFVQAVKRRFPNALLQF-EDFAQKNARRILER 259 (563)
T ss_pred ChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHH-----HHHHHHHHhCCCeEEeh-hhcCCchHHHHHHH
Confidence 6666644444431100 014578888899999999999998 66677777785545665 44321 11 12
Q ss_pred HHcCCCCCcccCCCcchhhHHHHHHHHHHHHHHHHcCcccccCCCCcCe--EEEEcccCCchhH-HHHHHHhcCCC----
Q psy4522 111 LRNLSNRPILVDCQDVTPAVNAVKQHMKEFSEQVISQKWLGYTGKPITD--VVNIGIGGSDLGP-LMVTEALKPYA---- 183 (560)
Q Consensus 111 LR~~~~~~~~~~g~~~~~~v~~~~~~i~~fa~~ir~g~~~g~~g~~i~~--vV~iGiGGS~LGp-~~~~~al~~~~---- 183 (560)
+|. .-++..|+..-..-| .+.-+. ..+|- +|+++++ ||+.|.|....|- +++.+++....
T Consensus 260 yr~--~i~~FnDDiQGTaaV--~LAgll---~A~r~------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~e 326 (563)
T PRK13529 260 YRD--EICTFNDDIQGTGAV--TLAGLL---AALKI------TGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEE 326 (563)
T ss_pred hcc--CCCeeccccchHHHH--HHHHHH---HHHHH------hCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChh
Confidence 333 334444443333332 233332 22221 3455654 9999999988886 56666553211
Q ss_pred -CCCeEEEEe
Q psy4522 184 -VGPRVHFVS 192 (560)
Q Consensus 184 -~~~~~~f~~ 192 (560)
...+++++|
T Consensus 327 eA~~~i~~vD 336 (563)
T PRK13529 327 EARKRFFMVD 336 (563)
T ss_pred HhcCeEEEEc
Confidence 013677765
No 92
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=35.90 E-value=1e+02 Score=33.00 Aligned_cols=37 Identities=35% Similarity=0.564 Sum_probs=24.1
Q ss_pred eEEEEcccCCchhHHHHHHHhcCCCCCCeEEEE-ecCChhHH
Q psy4522 159 DVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFV-SNIDGTHL 199 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~-~n~Dp~~~ 199 (560)
.|.+||+||. |..++-+...... ..+.|+ -|+|...+
T Consensus 19 ~i~viGvGg~--G~n~v~~l~~~~~--~~~~~iainTD~~~L 56 (349)
T TIGR00065 19 KIKVIGVGGG--GNNTVNRMLEEGV--EGVEFIAINTDAQHL 56 (349)
T ss_pred eEEEEEeCCc--HHHHHHHHHHcCC--CceEEEEEECCHHHH
Confidence 5899999997 7887766654321 234554 47786544
No 93
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=35.43 E-value=4.3e+02 Score=27.53 Aligned_cols=130 Identities=14% Similarity=0.167 Sum_probs=78.5
Q ss_pred eEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHh---hcC--CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy4522 159 DVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLK---KVN--PETVLFIVASKTFTTQETITNATSAK 233 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~---~l~--~~~Tl~iviSKSgtT~ETl~n~~~~~ 233 (560)
-|||-|+.|| |--++.+.|.. .-.+-+||+.|.-+-+.++ ..+ -.+.++++-=+|+ |-...+..+.
T Consensus 3 lvIVTGlSGA--GKsvAl~~lED----lGyycvDNLPp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~---~~~~~l~~~l 73 (286)
T COG1660 3 LVIVTGLSGA--GKSVALRVLED----LGYYCVDNLPPQLLPKLADLMLTLESRITKVAVVIDVRSR---EFFGDLEEVL 73 (286)
T ss_pred EEEEecCCCC--cHHHHHHHHHh----cCeeeecCCCHHHHHHHHHHHhhcccCCceEEEEEecccc---hhHHHHHHHH
Confidence 4889999999 55566677753 3457789999997666665 333 3667777777777 4444455566
Q ss_pred HHHHhcCCCcccccCeEEEEecCchhH-HhcccccCCeeeccCCCCCCcccchhhhHHHHHhhCchhHHHHHhHHHHHHH
Q psy4522 234 NWFLQHSKDPASVAKHFVALSTNAGKV-AEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNIGYNNFERLLAGAHFMDN 312 (560)
Q Consensus 234 ~~l~~~~~~~~~~~~h~vaVTt~~~~~-~~~gi~~~~~f~~~d~VGGRfSv~SavGL~~a~~~G~d~~~~lL~GA~~md~ 312 (560)
+.+.++. .+.-+++.+-++.+.+ +.|.-.. -..| +|.-|+ ++-.+..+ +++|+--+++.+
T Consensus 74 ~~l~~~~----~~~~~iLFLeA~~~~Lv~RY~etR---R~HP---------L~~~~~-l~~~I~~E--RelL~pLk~~A~ 134 (286)
T COG1660 74 DELKDNG----DIDPRVLFLEADDETLVRRYSETR---RSHP---------LSEDGL-LLEAIAKE--RELLAPLREIAD 134 (286)
T ss_pred HHHHhcC----CCCceEEEEECchhHHHHHHhhhh---hcCC---------CCccCc-HHHHHHHH--HHHHHHHHHHhh
Confidence 6665542 1345777776665544 4443221 1222 344454 22333344 688888888776
Q ss_pred HhcC
Q psy4522 313 HFQN 316 (560)
Q Consensus 313 ~f~~ 316 (560)
...+
T Consensus 135 ~vID 138 (286)
T COG1660 135 LVID 138 (286)
T ss_pred hEee
Confidence 6543
No 94
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=34.76 E-value=2.3e+02 Score=26.60 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=65.1
Q ss_pred CCCcCe-EEEEcccCCchhHHHHHHHhcCCCCCCeEEEEe-cCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHH
Q psy4522 154 GKPITD-VVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVS-NIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATS 231 (560)
Q Consensus 154 g~~i~~-vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~-n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~ 231 (560)
|++.+- |.-+|.=|=+-|.+.+.++|+.- +.+++... ...|+++.+.. ++..--.+.|+|-+|.=.+... .
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~--GfeVi~~g~~~tp~e~v~aA--~~~dv~vIgvSsl~g~h~~l~~---~ 82 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADA--GFEVINLGLFQTPEEAVRAA--VEEDVDVIGVSSLDGGHLTLVP---G 82 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhC--CceEEecCCcCCHHHHHHHH--HhcCCCEEEEEeccchHHHHHH---H
Confidence 345553 33456668889999999999753 67888875 56777666554 3445567888899998766654 5
Q ss_pred HHHHHHhcCCCcccccCeEE-EEecC-----chhHHhccccc
Q psy4522 232 AKNWFLQHSKDPASVAKHFV-ALSTN-----AGKVAEFGIDT 267 (560)
Q Consensus 232 ~~~~l~~~~~~~~~~~~h~v-aVTt~-----~~~~~~~gi~~ 267 (560)
+++.+++++.+ ++. .+-.+ ..++++.|++.
T Consensus 83 lve~lre~G~~------~i~v~~GGvip~~d~~~l~~~G~~~ 118 (143)
T COG2185 83 LVEALREAGVE------DILVVVGGVIPPGDYQELKEMGVDR 118 (143)
T ss_pred HHHHHHHhCCc------ceEEeecCccCchhHHHHHHhCcce
Confidence 66777776543 333 22221 23477788773
No 95
>PRK10094 DNA-binding transcriptional activator AllS; Provisional
Probab=34.21 E-value=4.2e+02 Score=27.06 Aligned_cols=113 Identities=12% Similarity=0.154 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHHHHHHHHc-------------CCCCCcccCCCcchhhHHHHH
Q psy4522 68 IDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRN-------------LSNRPILVDCQDVTPAVNAVK 134 (560)
Q Consensus 68 i~~~~l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~lH~aLR~-------------~~~~~~~~~g~~~~~~v~~~~ 134 (560)
+|-+.|+.|..+++...+.++-++|. .| .+++..+++. ..+-.....|+.+.+.....+
T Consensus 2 ~~~~~L~~f~~v~e~gs~s~AA~~L~------iS--QpavS~~I~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~~~a~~il 73 (308)
T PRK10094 2 FDPETLRTFIAVAETGSFSKAAERLC------KT--TATISYRIKLLEENTGVALFFRTTRSVTLTAAGEHLLSQARDWL 73 (308)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHhc------CC--HHHHHHHHHHHHHHhCCEEEeeCCCceeECHhHHHHHHHHHHHH
Confidence 45678899999999999999988876 22 3566666642 222223356777888888888
Q ss_pred HHHHHHHHHHHcCcccccCCCCcCeEEEEcccCC----chhHHHHHHHhcCCCCCCeEEEEecCC
Q psy4522 135 QHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGS----DLGPLMVTEALKPYAVGPRVHFVSNID 195 (560)
Q Consensus 135 ~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS----~LGp~~~~~al~~~~~~~~~~f~~n~D 195 (560)
.++.++.+++.+-. .+ ...-+.||+.-. ++-|+++.+....+ ++.++.+.....
T Consensus 74 ~~~~~~~~~~~~~~-~~-----~~g~l~Ig~~~~~~~~~~l~~~l~~~~~~~-P~i~l~l~~~~~ 131 (308)
T PRK10094 74 SWLESMPSELQQVN-DG-----VERQVNIVINNLLYNPQAVAQLLAWLNERY-PFTQFHISRQIY 131 (308)
T ss_pred HHHHHHHHHHHHhc-CC-----CCccEEEEecccccCHHHHHHHHHHHHHhC-CCcEEEEEeehh
Confidence 88888887776421 11 233456666432 33455555554433 346666665433
No 96
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.65 E-value=2.3e+02 Score=30.67 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhc
Q psy4522 131 NAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALK 180 (560)
Q Consensus 131 ~~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~ 180 (560)
.+.++++....+.++... ...|.++++||.+|||-.-+-.+.+.+++.
T Consensus 134 ~EIv~Qv~~~~~~~~~~~--~~gg~~~~nvV~mGmGEPL~N~d~v~~al~ 181 (372)
T PRK11194 134 SEIIGQVWRAAKIIGAAK--VTGQRPITNVVMMGMGEPLLNLNNVVPAME 181 (372)
T ss_pred HHHHHHHHHHHHHhhhcc--ccCCcccceEEEecCCccccCHHHHHHHHH
Confidence 345555555444443210 001346999999999999999988888764
No 97
>PRK10082 cell density-dependent motility repressor; Provisional
Probab=31.65 E-value=3.7e+02 Score=27.23 Aligned_cols=102 Identities=10% Similarity=0.122 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHHHHHHHHc-------------CCCCCcccCCCcchhhHHH
Q psy4522 66 NRIDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRN-------------LSNRPILVDCQDVTPAVNA 132 (560)
Q Consensus 66 q~i~~~~l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~lH~aLR~-------------~~~~~~~~~g~~~~~~v~~ 132 (560)
+.+|-..++.|..+++...+.++-+.++ .| ++++...++. ..+-..+..|+.+.+.+..
T Consensus 9 ~~m~~~~l~~F~av~e~gS~t~AA~~L~------iS--QpavS~~I~~LE~~lG~~Lf~R~~r~~~lT~~G~~l~~~a~~ 80 (303)
T PRK10082 9 HNIETKWLYDFLTLEKCRNFSQAAVSRN------VS--QPAFSRRIRALEQAIGVELFNRQVTPLQLSEQGKIFHSQIRH 80 (303)
T ss_pred cccchHHHHHHHHHHhcCCHHHHHHHhC------CC--hHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHH
Confidence 5688999999999999999999988887 22 2455555542 2222233457778888888
Q ss_pred HHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCC
Q psy4522 133 VKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPY 182 (560)
Q Consensus 133 ~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~ 182 (560)
.++.+++..+.+++.. + ..+-.+-||+..+ ++...+...+..+
T Consensus 81 ~l~~~e~~~~~~~~~~-----~-~~~g~lrIg~~~~-~~~~~l~~~l~~f 123 (303)
T PRK10082 81 LLQQLESNLAELRGGS-----D-YAQRKIKIAAAHS-LSLGLLPSIISQM 123 (303)
T ss_pred HHHHHHHHHHHHHhhc-----c-ccCceEEEEecch-hHHHHhHHHHHhh
Confidence 8888888888876531 1 1234677888644 3544444444433
No 98
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=31.64 E-value=6.4e+02 Score=27.08 Aligned_cols=124 Identities=21% Similarity=0.224 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHhhcHHHHHHHh--hCCccCCCcchHHHHHHHHHcCCCCCcccCCCcch-hhHHHHHHHHHHHHHHH
Q psy4522 68 IDDQGMNLLFELAKARKIEEAREKM--FNGERINFTEDRAVLHVALRNLSNRPILVDCQDVT-PAVNAVKQHMKEFSEQV 144 (560)
Q Consensus 68 i~~~~l~~L~~la~~~~l~~~~~~~--f~G~~in~te~r~~lH~aLR~~~~~~~~~~g~~~~-~~v~~~~~~i~~fa~~i 144 (560)
||.+.+++|. +...+..++.+. -.|.+|-..+........+|..... .... ..+...+..|-+-+.++
T Consensus 15 iD~~iv~Ll~---~R~~~~~~ia~~K~~~~~~v~d~~Re~~vl~~~~~~~~~------~~l~~~~~~~i~~~i~~~s~~~ 85 (374)
T PRK11199 15 VDKQLLELLA---KRLELVAQVGEVKSRHGLPIYVPEREAAMLASRRAEAEA------LGVPPDLIEDVLRRVMRESYSS 85 (374)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHH
Confidence 4445555443 344444443332 1455565555555555555543221 1111 23455666666555544
Q ss_pred HcCcccccCCCCcCeEEEEc-ccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhh
Q psy4522 145 ISQKWLGYTGKPITDVVNIG-IGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKK 205 (560)
Q Consensus 145 r~g~~~g~~g~~i~~vV~iG-iGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~ 205 (560)
....+.......++.|.+|| .|. +|.-++ .+|... +..+...+.-+.....++++.
T Consensus 86 q~~~~~~~~~~~~~~I~IiGG~Gl--mG~slA-~~l~~~--G~~V~~~d~~~~~~~~~~~~~ 142 (374)
T PRK11199 86 ENDKGFKTLNPDLRPVVIVGGKGQ--LGRLFA-KMLTLS--GYQVRILEQDDWDRAEDILAD 142 (374)
T ss_pred hHHhcccccCcccceEEEEcCCCh--hhHHHH-HHHHHC--CCeEEEeCCCcchhHHHHHhc
Confidence 33322222222457799998 553 243333 344322 345666653232334444443
No 99
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=31.15 E-value=4e+02 Score=24.51 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=35.1
Q ss_pred eEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCc
Q psy4522 187 RVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNA 257 (560)
Q Consensus 187 ~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~ 257 (560)
++...|-.|++.+.+.++. -+++|.+++-+... ...++.+.+.+.+.. .+|+|.+|+-.
T Consensus 42 ~~~~~d~~d~~~~~~al~~---~d~vi~~~~~~~~~---~~~~~~~~~a~~~~~------~~~~v~~s~~~ 100 (183)
T PF13460_consen 42 EIIQGDLFDPDSVKAALKG---ADAVIHAAGPPPKD---VDAAKNIIEAAKKAG------VKRVVYLSSAG 100 (183)
T ss_dssp EEEESCTTCHHHHHHHHTT---SSEEEECCHSTTTH---HHHHHHHHHHHHHTT------SSEEEEEEETT
T ss_pred ccceeeehhhhhhhhhhhh---cchhhhhhhhhccc---ccccccccccccccc------cccceeeeccc
Confidence 3333456777777777774 55888888655552 444444455444432 56888887654
No 100
>KOG2015|consensus
Probab=30.98 E-value=39 Score=35.97 Aligned_cols=29 Identities=31% Similarity=0.674 Sum_probs=22.8
Q ss_pred eEEEEcccCCchhHHHHHH-HhcCCCCCCeEEEEe
Q psy4522 159 DVVNIGIGGSDLGPLMVTE-ALKPYAVGPRVHFVS 192 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~-al~~~~~~~~~~f~~ 192 (560)
.|++||-|| ||.+.+.+ ||.+| ..+|++|
T Consensus 42 kiLviGAGG--LGCElLKnLal~gF---~~~~viD 71 (422)
T KOG2015|consen 42 KILVIGAGG--LGCELLKNLALSGF---RQLHVID 71 (422)
T ss_pred cEEEEccCc--ccHHHHHhHHhhcc---ceeEEEe
Confidence 499999999 79888876 66665 3688876
No 101
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=29.80 E-value=4.3e+02 Score=25.97 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhc
Q psy4522 133 VKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALK 180 (560)
Q Consensus 133 ~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~ 180 (560)
...-++++|++|++..| ..+.||.|+=||-..| +.++++|.
T Consensus 12 I~~~~~~lA~kI~~s~~------~PDvIiaiaRGG~~pa-riLsd~L~ 52 (192)
T COG2236 12 IHRLCRALAEKIRASGF------KPDVIVAIARGGLIPA-RILSDFLG 52 (192)
T ss_pred HHHHHHHHHHHHHHcCC------CCCEEEEEcCCceehH-HHHHHHhC
Confidence 44567788999985332 4688999999998754 77788884
No 102
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=29.64 E-value=2.4e+02 Score=27.48 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=31.3
Q ss_pred CeEEEEcccCCchhHHH-HHHHhcCCCCCCeEEEE-ecCChhHH--HHHHhhcC---CCCeEEEEEcCC
Q psy4522 158 TDVVNIGIGGSDLGPLM-VTEALKPYAVGPRVHFV-SNIDGTHL--AEVLKKVN---PETVLFIVASKT 219 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~~-~~~al~~~~~~~~~~f~-~n~Dp~~~--~~~l~~l~---~~~Tl~iviSKS 219 (560)
+++|.|| ||+.+.|-. +.+.+.......+++++ .+-++.++ .+-++.+. +.-.+.++.|..
T Consensus 103 ~~~llia-gG~Gitp~~s~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~ 170 (231)
T cd06191 103 GRYLLVA-AGSGITPLMAMIRATLQTAPESDFTLIHSARTPADMIFAQELRELADKPQRLRLLCIFTRE 170 (231)
T ss_pred CcEEEEe-cCccHhHHHHHHHHHHhcCCCCCEEEEEecCCHHHHhHHHHHHHHHHhCCCeEEEEEECCC
Confidence 5688888 888888843 33333222123445554 55566544 23333332 223345566653
No 103
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=28.25 E-value=2.4e+02 Score=27.30 Aligned_cols=61 Identities=16% Similarity=0.327 Sum_probs=30.0
Q ss_pred CeEEEEcccCCchhHH-HHHHHhcCCCCCCeEEEE-ecCChhHH--HHHHhhcC---CCCeEEEEEcCC
Q psy4522 158 TDVVNIGIGGSDLGPL-MVTEALKPYAVGPRVHFV-SNIDGTHL--AEVLKKVN---PETVLFIVASKT 219 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~-~~~~al~~~~~~~~~~f~-~n~Dp~~~--~~~l~~l~---~~~Tl~iviSKS 219 (560)
+.+|.|| ||+.++|- .+.+.+.......+++++ .+-+++++ .+-++.+. +.-++.+++|..
T Consensus 104 ~~~vlIa-gG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 171 (231)
T cd06215 104 DKLLLLS-AGSGITPMMSMARWLLDTRPDADIVFIHSARSPADIIFADELEELARRHPNFRLHLILEQP 171 (231)
T ss_pred CcEEEEe-cCcCcchHHHHHHHHHhcCCCCcEEEEEecCChhhhhHHHHHHHHHHHCCCeEEEEEEccC
Confidence 4688888 88888883 233333222123456555 44444432 23333332 223455566653
No 104
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=28.25 E-value=2.5e+02 Score=27.34 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=16.0
Q ss_pred CeEEEEcccCCchhHHHHHHHh
Q psy4522 158 TDVVNIGIGGSDLGPLMVTEAL 179 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~~~~~al 179 (560)
.+|++||.|| +|.+++..-.
T Consensus 20 s~VlviG~gg--lGsevak~L~ 39 (198)
T cd01485 20 AKVLIIGAGA--LGAEIAKNLV 39 (198)
T ss_pred CcEEEECCCH--HHHHHHHHHH
Confidence 4699999999 8988876643
No 105
>PRK08264 short chain dehydrogenase; Validated
Probab=28.23 E-value=5.4e+02 Score=24.66 Aligned_cols=60 Identities=25% Similarity=0.259 Sum_probs=34.9
Q ss_pred CeEEEEcccCCchhHHHHHHHhcCCC-C--------------CCeEEEE--ecCChhHHHHHHhhcCCCCeEEEEEcC
Q psy4522 158 TDVVNIGIGGSDLGPLMVTEALKPYA-V--------------GPRVHFV--SNIDGTHLAEVLKKVNPETVLFIVASK 218 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~~~~~al~~~~-~--------------~~~~~f~--~n~Dp~~~~~~l~~l~~~~Tl~iviSK 218 (560)
+.|+++| |.+.+|..++...++... . +.+++++ |-.|++.+.++++.+.+-+.+|..+..
T Consensus 7 ~~vlItG-gsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~ 83 (238)
T PRK08264 7 KVVLVTG-ANRGIGRAFVEQLLARGAAKVYAAARDPESVTDLGPRVVPLQLDVTDPASVAAAAEAASDVTILVNNAGI 83 (238)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCcccEEEEecChhhhhhcCCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence 3577777 455678877776664321 0 1234444 445677777777766555566555544
No 106
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=27.27 E-value=7.4e+02 Score=25.92 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcC---CCCCCe--EEEEec-------------CChh
Q psy4522 136 HMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKP---YAVGPR--VHFVSN-------------IDGT 197 (560)
Q Consensus 136 ~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~---~~~~~~--~~f~~n-------------~Dp~ 197 (560)
.+...++++.+|. .++.+|-|-| |-.-+.+|..- |.-.+. +-.+.. =|.+
T Consensus 49 Av~~~~~~l~~GG----------RLiY~GAGTS--GRLGvlDAsEcPPTfgv~~e~ViglIAGG~~A~~~avEGaED~~~ 116 (298)
T COG2103 49 AVDIIAAALKQGG----------RLIYIGAGTS--GRLGVLDASECPPTFGVPPELVIGLIAGGEEAILKAVEGAEDDEE 116 (298)
T ss_pred HHHHHHHHHHcCC----------eEEEEcCCcc--cchhccchhhCCCCcCCChhHeeeeecCCHHHHHHhhcCccccHH
Confidence 3445556667662 5899999988 33445566531 211111 111111 1112
Q ss_pred HHHHHHhhcCC-CCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCchh
Q psy4522 198 HLAEVLKKVNP-ETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGK 259 (560)
Q Consensus 198 ~~~~~l~~l~~-~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~~ 259 (560)
.=.+-++.++. ++-++|-|+-||+|.=.+..++.+|+ .+-+-|+++.|+..
T Consensus 117 ~g~~dl~~~~lt~~DvvvgIaASGrTPYvigal~yAr~-----------~Ga~Ti~iacNp~s 168 (298)
T COG2103 117 LGEADLKNIGLTAKDVVVGIAASGRTPYVIGALEYARQ-----------RGATTIGIACNPGS 168 (298)
T ss_pred HHHHHHHHcCCCcCCEEEEEecCCCCchhhHHHHHHHh-----------cCCeEEEeecCCCc
Confidence 22233444432 55678889999999999987777765 25577899888764
No 107
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=26.89 E-value=3.7e+02 Score=26.72 Aligned_cols=77 Identities=21% Similarity=0.322 Sum_probs=42.7
Q ss_pred eEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHh
Q psy4522 159 DVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQ 238 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~ 238 (560)
.+++||.|= .|..++ +.|... +-++..++ .|++...+.+.. ...+.+++. +++..++|. +
T Consensus 2 ~iiIiG~G~--vG~~va-~~L~~~--g~~Vv~Id-~d~~~~~~~~~~--~~~~~~v~g--d~t~~~~L~----------~ 61 (225)
T COG0569 2 KIIIIGAGR--VGRSVA-RELSEE--GHNVVLID-RDEERVEEFLAD--ELDTHVVIG--DATDEDVLE----------E 61 (225)
T ss_pred EEEEECCcH--HHHHHH-HHHHhC--CCceEEEE-cCHHHHHHHhhh--hcceEEEEe--cCCCHHHHH----------h
Confidence 478888773 344433 344322 33566666 577777665542 122444444 456666652 3
Q ss_pred cCCCcccccCeEEEEecCch
Q psy4522 239 HSKDPASVAKHFVALSTNAG 258 (560)
Q Consensus 239 ~~~~~~~~~~h~vaVTt~~~ 258 (560)
.+.+. ...+||+|.+..
T Consensus 62 agi~~---aD~vva~t~~d~ 78 (225)
T COG0569 62 AGIDD---ADAVVAATGNDE 78 (225)
T ss_pred cCCCc---CCEEEEeeCCCH
Confidence 44332 678999887754
No 108
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=26.82 E-value=3.9e+02 Score=28.49 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=54.7
Q ss_pred CcccccC-----CCCcCeEEEEcccCCchhHHHHHHHhcC---CCC-CCeEEEEecCChhHHH-----HHHhhcCCCCeE
Q psy4522 147 QKWLGYT-----GKPITDVVNIGIGGSDLGPLMVTEALKP---YAV-GPRVHFVSNIDGTHLA-----EVLKKVNPETVL 212 (560)
Q Consensus 147 g~~~g~~-----g~~i~~vV~iGiGGS~LGp~~~~~al~~---~~~-~~~~~f~~n~Dp~~~~-----~~l~~l~~~~Tl 212 (560)
|+..|++ |...+.+|.||=|...+-.-++... .+ +++ ..++.-. +.|...+. .+-+-.+.++.-
T Consensus 159 g~vLGC~~~~~~~~~~d~~l~vg~g~FH~~~~~l~~~-~~v~~~DP~s~~~~~~-~~~~~~~l~rR~~~I~ka~~A~~vG 236 (332)
T TIGR00322 159 GQVLGCNSEVLRGEQADAMVFIGDGRFHPLGAAIHTE-KEVFKYDPYSGEFTRI-GEDAKQFVKVRALAISKARKGKKFG 236 (332)
T ss_pred ccccCCCcCCCCCCCCCEEEEEcCCcchHHHHHHHcC-CcEEEECCCCCceeEc-cccHHHHHHHHHHHHHHHhcCCEEE
Confidence 4555555 4456789999977776544444321 11 001 1111111 12222221 122234667788
Q ss_pred EEEEcCCCCC-HHHHHHHHHHHHHHHhcCCCcccccCeEEEEecC--chhHHhcc
Q psy4522 213 FIVASKTFTT-QETITNATSAKNWFLQHSKDPASVAKHFVALSTN--AGKVAEFG 264 (560)
Q Consensus 213 ~iviSKSgtT-~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~--~~~~~~~g 264 (560)
+||.||+|-- .+.+ +.+++.+.+++ .++++.+.+. ++++..|.
T Consensus 237 IlvgTl~~q~~~~~~---~~l~~ll~~~g------kk~y~i~~~~in~~kL~nf~ 282 (332)
T TIGR00322 237 VVLSSKGGQGRLRLA---KNLKKNLEEAG------KTVLIILLSNVSPAKLLMFD 282 (332)
T ss_pred EEEecCccCCCHHHH---HHHHHHHHHcC------CcEEEEEeCCCCHHHHhCCC
Confidence 9999999853 3333 34555555553 3456555565 45666664
No 109
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=26.36 E-value=2.7e+02 Score=30.19 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHHhc
Q psy4522 208 PETVLFIVASKTFTTQETITNATSAKNWFLQH 239 (560)
Q Consensus 208 ~~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~ 239 (560)
++-..-|.--.=|-|.|.+.-+..+...|-+.
T Consensus 201 ~~GAs~vFGPQKGat~~~v~~lD~~l~hfa~~ 232 (378)
T COG1929 201 PQGASAVFGPQKGATPEMVEELDQALSHFAEV 232 (378)
T ss_pred CCCceeeecCccCCCHHHHHHHHHHHHHHHHH
Confidence 45555666777788999988777777666544
No 110
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=26.33 E-value=1.8e+02 Score=27.29 Aligned_cols=54 Identities=7% Similarity=-0.027 Sum_probs=40.2
Q ss_pred CCCcceeEEEEccCC-hhhHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHH
Q psy4522 476 QGNRPTNSIVVKKIT-PFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLA 529 (560)
Q Consensus 476 ~g~rPs~~I~l~~l~-~~~LG~Lia~yE~~t~v~g~l~gINpFDQpGVE~gK~~a 529 (560)
..+.+++.|..+.-+ -..+-+|+++--+..++.+.+.||||..-|-+...|+..
T Consensus 100 ~~~~~v~~v~~~g~s~l~rl~~li~l~d~aS~YLA~~~GvDP~~v~~I~~lK~~l 154 (155)
T PF10432_consen 100 DRGVRVIEVEAEGGSPLERLASLIYLGDYASVYLALLYGVDPTPVPIIDELKERL 154 (155)
T ss_dssp TCSSEEEEE--SCCCHHHHHHHHHHHHHHHHHHHHHHCT--SS-TCCCHHHHHHH
T ss_pred hcCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhCcCCCcchHHHHHHhcc
Confidence 346778888777555 345889999999999999999999999999999888753
No 111
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=26.20 E-value=69 Score=28.27 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCchhHHhcccc
Q psy4522 211 VLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKVAEFGID 266 (560)
Q Consensus 211 Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~~~~~~gi~ 266 (560)
-++||.|+||.|.--++. .. ....++++|.+++-++.+.+-
T Consensus 18 k~Ivv~T~sG~ta~~isk-----------~R----P~~pIiavt~~~~~~r~l~l~ 58 (117)
T PF02887_consen 18 KAIVVFTESGRTARLISK-----------YR----PKVPIIAVTPNESVARQLSLY 58 (117)
T ss_dssp SEEEEE-SSSHHHHHHHH-----------T-----TSSEEEEEESSHHHHHHGGGS
T ss_pred CEEEEECCCchHHHHHHh-----------hC----CCCeEEEEcCcHHHHhhhhcc
Confidence 479999999998766641 11 145789999988877776654
No 112
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=26.16 E-value=3.5e+02 Score=26.92 Aligned_cols=97 Identities=13% Similarity=0.217 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHcCccccc--CCCCcCeEEEEcc--cCCchhHHHHHHHhcCCCCCCeEEEE------ecCCh-hHH-
Q psy4522 132 AVKQHMKEFSEQVISQKWLGY--TGKPITDVVNIGI--GGSDLGPLMVTEALKPYAVGPRVHFV------SNIDG-THL- 199 (560)
Q Consensus 132 ~~~~~i~~fa~~ir~g~~~g~--~g~~i~~vV~iGi--GGS~LGp~~~~~al~~~~~~~~~~f~------~n~Dp-~~~- 199 (560)
+...+++++|.+|.+. +.+. +|+ +.+|+||| ||-.+... +.+.|....-.+++-|+ +++.. ..+
T Consensus 32 ~I~~~i~~LA~~I~~~-~~~~~~~~~--~~~vivgVlkGg~~fa~d-L~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~ 107 (211)
T PTZ00271 32 QVWAATAKCAKKIAED-YRSFKLTTE--NPLYLLCVLKGSFIFTAD-LARFLADEGVPVKVEFICASSYGTGVETSGQVR 107 (211)
T ss_pred HHHHHHHHHHHHHHHH-hhhccccCC--CCeEEEEEcCCCHHHHHH-HHHHhcccCCCeeEEEEEEEecCCCCcccCceE
Confidence 4567888999998763 3321 111 24555565 44444434 45566421113466676 22111 111
Q ss_pred --HHHHhhcCCCCeEEEE--EcCCCCCHHHHHHHHHHHHHHHhc
Q psy4522 200 --AEVLKKVNPETVLFIV--ASKTFTTQETITNATSAKNWFLQH 239 (560)
Q Consensus 200 --~~~l~~l~~~~Tl~iv--iSKSgtT~ETl~n~~~~~~~l~~~ 239 (560)
..+...+.. +.++|| |--||.|+.- ++++|++.
T Consensus 108 i~~~~~~~i~g-k~VLIVDDIvDTG~TL~~------v~~~l~~~ 144 (211)
T PTZ00271 108 MLLDVRDSVEN-RHILIVEDIVDSAITLQY------LMRFMLAK 144 (211)
T ss_pred EecCCCCCCCC-CEEEEEecccCCHHHHHH------HHHHHHhc
Confidence 111123333 444444 5688887654 56777765
No 113
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=26.10 E-value=2.2e+02 Score=33.29 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCC-hhHHHHHHhhcCCCCeEEE
Q psy4522 136 HMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNID-GTHLAEVLKKVNPETVLFI 214 (560)
Q Consensus 136 ~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~D-p~~~~~~l~~l~~~~Tl~i 214 (560)
.++++++++.. .++++++|-|-++ | -+.--||+= ..-..+|-- ... .+..+--++-+++...+|+
T Consensus 515 ~~~~~a~~l~~----------~~~~~~lGrG~~y-~-~A~EgALKl-kE~syi~ae-~y~~~EfkHGP~alid~~~pVi~ 580 (670)
T PTZ00394 515 PVKALAARLKE----------SSSILVLGRGYDL-A-TAMEAALKV-KELSYVHTE-GIHSGELKHGPLALIDETSPVLA 580 (670)
T ss_pred HHHHHHHHhhC----------CCcEEEEeCCCCH-H-HHHHHHHHH-HHHHHHHhC-cCChhhccCCcHHHhcCCceEEE
Confidence 35555665543 5789999998764 3 222334420 000001111 112 2222333445677777777
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCch-hHHhcccccCCeeeccC
Q psy4522 215 VASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAG-KVAEFGIDTANMFGFWD 275 (560)
Q Consensus 215 viSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~-~~~~~gi~~~~~f~~~d 275 (560)
+++..-+...+..+++.+++ . ..++++|++... .+... ...++.+|.
T Consensus 581 l~~~~~~~e~~~~~~~evk~----~-------g~~vi~I~~~~~~~~~~~---~~~~i~vp~ 628 (670)
T PTZ00394 581 MCTHDKHFGLSKSAVQQVKA----R-------GGAVVVFATEVDAELKAA---ASEIVLVPK 628 (670)
T ss_pred EEcCCchHHHHHHHHHHHHH----c-------CCeEEEEECCCcchhccc---CCcEEECCC
Confidence 77654333345544444433 2 457888876542 22111 124677875
No 114
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria.
Probab=25.64 E-value=6.9e+02 Score=25.01 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHHHHHHHH-------------cCCCCCcccCCCcchhhHHHH
Q psy4522 67 RIDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALR-------------NLSNRPILVDCQDVTPAVNAV 133 (560)
Q Consensus 67 ~i~~~~l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~lH~aLR-------------~~~~~~~~~~g~~~~~~v~~~ 133 (560)
+++-..++.|..+++...+..+-+.|+ .| .+++-.+++ ...+-..+..|+.+.+.+...
T Consensus 2 ~m~l~~l~~f~~v~~~gS~s~AA~~L~------is--q~avS~~I~~LE~~lg~~LF~R~~~~~~lT~~G~~l~~~a~~~ 73 (300)
T TIGR02424 2 RIKFRHLQCFVEVARQGSVKRAAEALH------IT--QPAVSKTLRELEEILGTPLFERDRRGIRLTRYGELFLRHAGAS 73 (300)
T ss_pred CccHHHHHHHHHHHHhCCHHHHHHHhC------CC--hHHHHHHHHHHHHHhCCeEEEEcCCCccccHhHHHHHHHHHHH
Confidence 567788999999999999999999887 22 234444443 222222334577777777778
Q ss_pred HHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCC---chhHHHHHHHhcCCCCCCeEEEEecCChhHHHH
Q psy4522 134 KQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGS---DLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAE 201 (560)
Q Consensus 134 ~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS---~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~ 201 (560)
++.++++...+++-. . .....+.||+..+ .+-|.++......+ +..++.+.. .+..++.+
T Consensus 74 l~~~~~~~~~~~~~~-~-----~~~~~l~I~~~~~~~~~~~~~~l~~~~~~~-P~~~i~~~~-~~~~~~~~ 136 (300)
T TIGR02424 74 LAALRQGVASLSQLG-E-----GEGPTVRIGALPTVAARLMPEVVKRFLARA-PRLRVRIMT-GPNAYLLD 136 (300)
T ss_pred HHHHHHHHHHHHHhc-C-----CCCceEEEecccHHHHhhhHHHHHHHHHhC-CCcEEEEEe-CchHHHHH
Confidence 888777777766421 1 1344677887754 34455555444333 234555554 34444333
No 115
>PLN02828 formyltetrahydrofolate deformylase
Probab=24.87 E-value=1.7e+02 Score=30.33 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCch---------hHHhcccccCCeeeccC
Q psy4522 209 ETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAG---------KVAEFGIDTANMFGFWD 275 (560)
Q Consensus 209 ~~Tl~iviSKSgtT~ETl~n~~~~~~~l~~~~~~~~~~~~h~vaVTt~~~---------~~~~~gi~~~~~f~~~d 275 (560)
+.-+.|.+||+|+..+-+. .+| . . + .+.-.+++|-+|.+ .++++||+ ++.+|.
T Consensus 70 ~~riavlvSg~g~nl~~ll-----~~~-~-~-g---~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP---~~~~~~ 131 (268)
T PLN02828 70 KYKIAVLASKQDHCLIDLL-----HRW-Q-D-G---RLPVDITCVISNHERGPNTHVMRFLERHGIP---YHYLPT 131 (268)
T ss_pred CcEEEEEEcCCChhHHHHH-----Hhh-h-c-C---CCCceEEEEEeCCCCCCCchHHHHHHHcCCC---EEEeCC
Confidence 4467889999999988873 222 1 1 1 12334556656542 35667887 444543
No 116
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=24.84 E-value=1.3e+02 Score=29.39 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=20.6
Q ss_pred CeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEe
Q psy4522 158 TDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVS 192 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~ 192 (560)
.+|+++|.|| +|.+++..-.... --+++++|
T Consensus 22 s~VlIiG~gg--lG~evak~La~~G--Vg~i~lvD 52 (197)
T cd01492 22 ARILLIGLKG--LGAEIAKNLVLSG--IGSLTILD 52 (197)
T ss_pred CcEEEEcCCH--HHHHHHHHHHHcC--CCEEEEEE
Confidence 4699999999 8998877643321 12466665
No 117
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=23.93 E-value=2.7e+02 Score=27.40 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=30.3
Q ss_pred CeEEEEcccCCchhHHH-HHHHhcCCCCCCeEEEE-ecCChh--HHHHHHhhcC---CCCeEEEEEcCC
Q psy4522 158 TDVVNIGIGGSDLGPLM-VTEALKPYAVGPRVHFV-SNIDGT--HLAEVLKKVN---PETVLFIVASKT 219 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~~-~~~al~~~~~~~~~~f~-~n~Dp~--~~~~~l~~l~---~~~Tl~iviSKS 219 (560)
+++|.|+ ||+.+.|-+ +.+.+.......++.++ .+-++. .+.+.++.+. +.-+++.+.|..
T Consensus 110 ~~~v~ia-gG~GiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~ 177 (238)
T cd06211 110 RPIIFIA-GGSGLSSPRSMILDLLERGDTRKITLFFGARTRAELYYLDEFEALEKDHPNFKYVPALSRE 177 (238)
T ss_pred CCEEEEe-CCcCHHHHHHHHHHHHhcCCCCcEEEEEecCChhhhccHHHHHHHHHhCCCeEEEEEECCC
Confidence 5688888 899988843 33333221112334444 444443 2234444332 333455556653
No 118
>PRK11139 DNA-binding transcriptional activator GcvA; Provisional
Probab=23.79 E-value=3.3e+02 Score=27.48 Aligned_cols=108 Identities=9% Similarity=0.060 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHHHHHHHH-------------cCCCCCcccCCCcchhhHHH
Q psy4522 66 NRIDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALR-------------NLSNRPILVDCQDVTPAVNA 132 (560)
Q Consensus 66 q~i~~~~l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~lH~aLR-------------~~~~~~~~~~g~~~~~~v~~ 132 (560)
-.+|-..++.|..+++...+..+-+.|+ .| ++++..+++ ...+-..+..|+.+.+.+..
T Consensus 4 ~~~~l~~l~~f~~v~~~gs~s~AA~~L~------is--q~avS~~i~~LE~~lg~~Lf~R~~r~l~lT~~G~~l~~~~~~ 75 (297)
T PRK11139 4 RLPPLNALRAFEAAARHLSFTRAAEELF------VT--QAAVSHQIKALEDFLGLKLFRRRNRSLLLTEEGQRYFLDIRE 75 (297)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHhC------CC--hHHHHHHHHHHHHHhCchheEecCCceeECHhHHHHHHHHHH
Confidence 3467788999999999999999999887 22 245555554 22222233457778888888
Q ss_pred HHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHH----HHHHHhcCCCCCCeEEEE
Q psy4522 133 VKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPL----MVTEALKPYAVGPRVHFV 191 (560)
Q Consensus 133 ~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~----~~~~al~~~~~~~~~~f~ 191 (560)
.++.+.++.+.+++.. .+..|-||+..+. +.. .+.+....+ +..++.+.
T Consensus 76 ~l~~~~~~~~~~~~~~--------~~g~l~I~~~~~~-~~~~l~~~l~~f~~~~-p~i~i~l~ 128 (297)
T PRK11139 76 IFDQLAEATRKLRARS--------AKGALTVSLLPSF-AIQWLVPRLSSFNEAH-PDIDVRLK 128 (297)
T ss_pred HHHHHHHHHHHHhcCC--------CCceEEEecChHH-HHHHHHHHHHHHHHHC-CCceEEEE
Confidence 8888888888876521 2446788887543 333 333333222 24556664
No 119
>TIGR02036 dsdC D-serine deaminase transcriptional activator. This family, part of the LysR family of transcriptional regulators, activates transcription of the gene for D-serine deaminase, dsdA. Trusted members of this family so far are found adjacent to dsdA and only in Gammaproteobacteria, including E. coli, Vibrio cholerae, and Colwellia psychrerythraea.
Probab=23.46 E-value=5.8e+02 Score=25.85 Aligned_cols=110 Identities=8% Similarity=0.059 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHHHHHHHHc-------------CCCCCcccCCCcchhhHHH
Q psy4522 66 NRIDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRN-------------LSNRPILVDCQDVTPAVNA 132 (560)
Q Consensus 66 q~i~~~~l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~lH~aLR~-------------~~~~~~~~~g~~~~~~v~~ 132 (560)
+.+|-..|+.|..+|+...+..+-+.++ .| .+++..+++. +.+-..+..|+.+.+.+..
T Consensus 6 ~~~~l~~L~~F~~va~~gs~s~AA~~L~------is--QpavS~~I~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~~~a~~ 77 (302)
T TIGR02036 6 NSFQLSKMHTFEVAARHQSFSLAAEELS------LT--PSAISHRINQLEEELGIQLFVRSHRKVELTHEGKRIYWALKS 77 (302)
T ss_pred cCcCHHHHHHHHHHHHhCCHHHHHHHHC------CC--HHHHHHHHHHHHHHhCCceEEECCCceeECHhHHHHHHHHHH
Confidence 3567789999999999999999999887 22 2444544442 2222234567888888888
Q ss_pred HHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccC---CchhHHHHHHHhcCCCCCCeEEEEe
Q psy4522 133 VKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGG---SDLGPLMVTEALKPYAVGPRVHFVS 192 (560)
Q Consensus 133 ~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGG---S~LGp~~~~~al~~~~~~~~~~f~~ 192 (560)
.++.+++..+.++++. ..-.|.||..- +.+-|..+.+....+ +..++++.+
T Consensus 78 ~l~~~~~~~~~~~~~~--------~~g~l~i~~~~~~~~~~l~~~l~~f~~~~-P~i~l~l~~ 131 (302)
T TIGR02036 78 SLDTLNQEILDIKNQE--------LSGTLTLYSRPSFAQCWLVPRIGDFTRRY-PSISLTVLT 131 (302)
T ss_pred HHHHHHHHHHHHHhCC--------CCCeEEEEechHHHHHHHHHHHHHHHHHC-CCceEEEEe
Confidence 8888887777765432 22356777653 233444444443332 346666553
No 120
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=23.39 E-value=5.6e+02 Score=26.75 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=30.8
Q ss_pred CeEEEEcccCCchhHHH-HHHHhcCCCCCCeEEEE-ecCChhHH--HHHHhhc---CCCCeEEEEEcC
Q psy4522 158 TDVVNIGIGGSDLGPLM-VTEALKPYAVGPRVHFV-SNIDGTHL--AEVLKKV---NPETVLFIVASK 218 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~~-~~~al~~~~~~~~~~f~-~n~Dp~~~--~~~l~~l---~~~~Tl~iviSK 218 (560)
+++|.|+ ||+.+.|-+ +.+.+.......+++++ .+-++.++ .+.++.+ .+.-++..+.|.
T Consensus 205 ~~ivlIa-gGtGiaP~~s~l~~~~~~~~~~~i~l~~g~r~~~dl~~~e~l~~~~~~~~~~~~~~~~s~ 271 (339)
T PRK07609 205 KPIVLLA-SGTGFAPIKSIVEHLRAKGIQRPVTLYWGARRPEDLYLSALAEQWAEELPNFRYVPVVSD 271 (339)
T ss_pred CCEEEEe-cCcChhHHHHHHHHHHhcCCCCcEEEEEecCChHHhccHHHHHHHHHhCCCeEEEEEecC
Confidence 4688888 889999953 23333222122345554 45555543 2333322 234455556664
No 121
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=23.23 E-value=1.7e+02 Score=29.05 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=24.1
Q ss_pred eecccccee-cCCCCCCcchhHHHHHHhcCCcccceeEecc
Q psy4522 378 VNYSTGPIV-WGEPGTNGQHAFYQLIHQGTKLIPADFIAPA 417 (560)
Q Consensus 378 ~~~~tgpiv-~g~~Gt~dqHS~~Qll~qG~~~~~~dfi~~~ 417 (560)
+.++.+..| |++.|..+.+.+-|.+..|.+..-+++....
T Consensus 104 iNiHpSLLP~yrG~g~~~~~v~~a~i~~g~~~tG~Tvh~v~ 144 (207)
T PLN02331 104 LNIHPALLPAFGGKGYYGIKVHKAVIASGARYSGPTVHFVD 144 (207)
T ss_pred EEEeCccccCCCCCCcccchHHHHHHHcCCCeEEEEEEEEC
Confidence 444434333 5556666667777778788777666655443
No 122
>PRK05442 malate dehydrogenase; Provisional
Probab=22.93 E-value=6.9e+02 Score=26.47 Aligned_cols=30 Identities=10% Similarity=-0.041 Sum_probs=17.2
Q ss_pred CCeEEEEEc---CCCCCHHH--HHHHHHHHHHHHh
Q psy4522 209 ETVLFIVAS---KTFTTQET--ITNATSAKNWFLQ 238 (560)
Q Consensus 209 ~~Tl~iviS---KSgtT~ET--l~n~~~~~~~l~~ 238 (560)
.+..||.++ |.|.|.+- -.|+..+++...+
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~ 115 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKA 115 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 334444444 56777765 4577777776543
No 123
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=22.75 E-value=2.8e+02 Score=29.32 Aligned_cols=55 Identities=15% Similarity=0.340 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCccccc-----CCCCc--CeEEEEcccCCchhHHHHHHHhc-CCCCCCeEEEEe
Q psy4522 133 VKQHMKEFSEQVISQKWLGY-----TGKPI--TDVVNIGIGGSDLGPLMVTEALK-PYAVGPRVHFVS 192 (560)
Q Consensus 133 ~~~~i~~fa~~ir~g~~~g~-----~g~~i--~~vV~iGiGGS~LGp~~~~~al~-~~~~~~~~~f~~ 192 (560)
...++....+.+|+|+|... .|..+ ++|.+||.|.. |-.++.. +. .+ ++++.+.+
T Consensus 114 ~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~I--G~~va~~-l~~~f--gm~V~~~~ 176 (323)
T PRK15409 114 TARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRI--GMALAQR-AHFGF--NMPILYNA 176 (323)
T ss_pred HHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHH--HHHHHHH-HHhcC--CCEEEEEC
Confidence 45566777788899999643 13222 46999999974 5554433 33 44 56777665
No 124
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.60 E-value=2.7e+02 Score=29.06 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=18.1
Q ss_pred cchhHHHHHHhcCCcccceeEecc
Q psy4522 394 GQHAFYQLIHQGTKLIPADFIAPA 417 (560)
Q Consensus 394 dqHS~~Qll~qG~~~~~~dfi~~~ 417 (560)
+.|++.|-+..|-+..-++.-.+.
T Consensus 207 G~~~~~~ai~~G~k~tG~TvH~v~ 230 (289)
T PRK13010 207 GARPYHQAHARGVKLIGATAHFVT 230 (289)
T ss_pred CCCHHHHHHHcCCCeEEEEEEEEc
Confidence 567888999999887777655544
No 125
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=22.54 E-value=4.5e+02 Score=25.33 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHcCcccccCCCCcCeEEEEccc-CCchhHHHHHHHhc
Q psy4522 132 AVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIG-GSDLGPLMVTEALK 180 (560)
Q Consensus 132 ~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiG-GS~LGp~~~~~al~ 180 (560)
+..++++++|.+|.+. +.+ .| ++.|++||= |+..=...+.+.|.
T Consensus 13 ~i~~~i~~lA~~I~~~-~~~-~~---~~~vvvgI~~Gg~~fa~~L~~~L~ 57 (178)
T PRK15423 13 EIKARIAELGRQITER-YKD-SG---SDMVLVGLLRGSFMFMADLCREVQ 57 (178)
T ss_pred HHHHHHHHHHHHHHHH-hcc-cC---CCeEEEEEecCChHHHHHHHHHhC
Confidence 3556888888888752 221 12 235566653 44444444556664
No 126
>PLN02252 nitrate reductase [NADPH]
Probab=21.97 E-value=6e+02 Score=30.94 Aligned_cols=61 Identities=18% Similarity=0.358 Sum_probs=32.6
Q ss_pred cCeEEEEcccCCchhHHH--HHHHhcCCCCCCeEEEE-ecCChhHH--HHHHhhcC---C-CCeEEEEEcC
Q psy4522 157 ITDVVNIGIGGSDLGPLM--VTEALKPYAVGPRVHFV-SNIDGTHL--AEVLKKVN---P-ETVLFIVASK 218 (560)
Q Consensus 157 i~~vV~iGiGGS~LGp~~--~~~al~~~~~~~~~~f~-~n~Dp~~~--~~~l~~l~---~-~~Tl~iviSK 218 (560)
.+.||.|+ |||.+.|-. +..++.......+++++ .|-+++++ .+-|+.+. | .=+++.+.|.
T Consensus 758 ~~~vvmIA-GGsGITPi~silr~ll~~~~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~ 827 (888)
T PLN02252 758 AKKLAMLA-GGTGITPMYQVIQAILRDPEDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQ 827 (888)
T ss_pred CceEEEEe-cceehhHHHHHHHHHHhccCCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecC
Confidence 35788887 899999833 33344322223456665 45555433 34444442 2 2345666675
No 127
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=21.94 E-value=6e+02 Score=26.46 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=51.4
Q ss_pred CeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhcCCC---CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy4522 158 TDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPE---TVLFIVASKTFTTQETITNATSAKN 234 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~---~Tl~iviSKSgtT~ETl~n~~~~~~ 234 (560)
+-|++.|+-|| |=-.+...|.. ....+++|+++.-+.++++.+... .-+.+++-... .+-...+...++
T Consensus 7 ~~i~i~G~~Gs--GKtt~~~~l~~----~g~~~~d~~~~~L~~~l~~~~~~~~~~~~~av~iD~r~--~~~~~~~~~~~~ 78 (288)
T PRK05416 7 RLVIVTGLSGA--GKSVALRALED----LGYYCVDNLPPSLLPKLVELLAQSGGIRKVAVVIDVRS--RPFFDDLPEALD 78 (288)
T ss_pred eEEEEECCCCC--cHHHHHHHHHH----cCCeEECCcCHHHHHHHHHHHHhcCCCCCeEEEEccCc--hhhHHHHHHHHH
Confidence 45888899988 54455556642 235778999998877776655432 33444443332 222223334455
Q ss_pred HHHhcCCCcccccCeEEEEecCchhH
Q psy4522 235 WFLQHSKDPASVAKHFVALSTNAGKV 260 (560)
Q Consensus 235 ~l~~~~~~~~~~~~h~vaVTt~~~~~ 260 (560)
.+.+.+ +.-++|.+..+.+.+
T Consensus 79 ~L~~~g-----~~~~iI~L~a~~e~L 99 (288)
T PRK05416 79 ELRERG-----IDVRVLFLDASDEVL 99 (288)
T ss_pred HHHHcC-----CcEEEEEEECCHHHH
Confidence 555442 133567777776654
No 128
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=21.72 E-value=1.1e+02 Score=27.63 Aligned_cols=30 Identities=20% Similarity=0.455 Sum_probs=19.7
Q ss_pred eEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEe
Q psy4522 159 DVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVS 192 (560)
Q Consensus 159 ~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~ 192 (560)
+|++||.|| +|..++..-.+.. --++.++|
T Consensus 1 ~VliiG~Gg--lGs~ia~~L~~~G--v~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGG--LGSEIALNLARSG--VGKITLID 30 (143)
T ss_pred CEEEECCCH--HHHHHHHHHHHCC--CCEEEEEc
Confidence 388999987 6888777644322 13566665
No 129
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=21.55 E-value=4.2e+02 Score=27.65 Aligned_cols=45 Identities=24% Similarity=0.502 Sum_probs=31.4
Q ss_pred cccCCCC-cCeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhH
Q psy4522 150 LGYTGKP-ITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTH 198 (560)
Q Consensus 150 ~g~~g~~-i~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~ 198 (560)
.|+.|.. --.+..+|-|||+.-.-.+..+|.. -.+.+..++|+-+
T Consensus 184 ~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a----~~~~i~tdv~Gv~ 229 (292)
T cd04258 184 QGFIGSTEKGRTTTLGRGGSDYSAALLAEALHA----EELQIWTDVAGIY 229 (292)
T ss_pred CCccccCCCCCEEecCCCchHHHHHHHHHHcCC----CEEEEEECCCccC
Confidence 4555532 2257889999999999888888853 3566777777543
No 130
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=20.97 E-value=1.4e+02 Score=32.20 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHcCcccccCCCCcCeEEEEcccCCchhHHHHHHHhc
Q psy4522 132 AVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALK 180 (560)
Q Consensus 132 ~~~~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS~LGp~~~~~al~ 180 (560)
+.++++....+.+... .++++++||+.|||..-+.-..+..|+.
T Consensus 133 EIv~Qv~~~~~~~~~~-----~~~~i~NVV~MGMGEPl~N~dnV~~a~~ 176 (349)
T COG0820 133 EIVEQVLLAAKALGED-----FGRRISNVVFMGMGEPLLNLDNVVKALE 176 (349)
T ss_pred HHHHHHHHHHHhcCcc-----ccceeeeEEEecCCchhhhHHHHHHHHH
Confidence 3455555555444332 1568999999999999999988888874
No 131
>PLN02928 oxidoreductase family protein
Probab=20.90 E-value=3e+02 Score=29.36 Aligned_cols=55 Identities=16% Similarity=0.320 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHcCcccccCCCCc--CeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEe
Q psy4522 133 VKQHMKEFSEQVISQKWLGYTGKPI--TDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVS 192 (560)
Q Consensus 133 ~~~~i~~fa~~ir~g~~~g~~g~~i--~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~ 192 (560)
...++..+.+.+++|.|....|..+ ++|.+||.|.- |-.++. .+..+ +.++.+.+
T Consensus 133 ~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~I--G~~vA~-~l~af--G~~V~~~d 189 (347)
T PLN02928 133 LLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAI--GIELAK-RLRPF--GVKLLATR 189 (347)
T ss_pred HHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHH--HHHHHH-HHhhC--CCEEEEEC
Confidence 3455666677788888865444333 46999999863 544433 34443 46777765
No 132
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=20.83 E-value=2.3e+02 Score=25.65 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=29.5
Q ss_pred CeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEecCChhHHHHHHhhc
Q psy4522 158 TDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKV 206 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~l~~l 206 (560)
+++++||-||. .+++..+|... +.+-.++-|-+.+...++.+.+
T Consensus 13 ~~vlviGaGg~---ar~v~~~L~~~--g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 13 KRVLVIGAGGA---ARAVAAALAAL--GAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp SEEEEESSSHH---HHHHHHHHHHT--TSSEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEECCHHH---HHHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHc
Confidence 57999999995 45555666433 4443455567778777777776
No 133
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=20.66 E-value=3.3e+02 Score=27.92 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=52.7
Q ss_pred CCccCCCcchHHHHHHHHHcCCCCCcccCCCcchhhHHHHHHHHHHHHHH-HHcCcccccCCCCcCeEEEEcccCCc--h
Q psy4522 94 NGERINFTEDRAVLHVALRNLSNRPILVDCQDVTPAVNAVKQHMKEFSEQ-VISQKWLGYTGKPITDVVNIGIGGSD--L 170 (560)
Q Consensus 94 ~G~~in~te~r~~lH~aLR~~~~~~~~~~g~~~~~~v~~~~~~i~~fa~~-ir~g~~~g~~g~~i~~vV~iGiGGS~--L 170 (560)
=||+||.| |+.+-.+++...- +.+.+.+.+ +.+| -+||=||.| +. -
T Consensus 4 IGErin~~--~~~~~~~~~~~d~------------------~~i~~~A~~~~~~G----------AdiIDVg~~-~~~~e 52 (261)
T PRK07535 4 IGERINGT--RKSIAEAIEAKDA------------------AFIQKLALKQAEAG----------ADYLDVNAG-TAVEE 52 (261)
T ss_pred EEeccchh--hHHHHHHHHcCCH------------------HHHHHHHHHHHHCC----------CCEEEECCC-CCchh
Confidence 38999999 8888888885321 122222222 4445 258888865 32 1
Q ss_pred hHHHHHHH---hcCCCCCCeEEEEecCChhHHHHHHhhcCCCCeEEEEEcCCCCC
Q psy4522 171 GPLMVTEA---LKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTT 222 (560)
Q Consensus 171 Gp~~~~~a---l~~~~~~~~~~f~~n~Dp~~~~~~l~~l~~~~Tl~iviSKSgtT 222 (560)
.++.+..+ +.... +.. .-+|+.+|..++..++.+. ...+ +-|=||..
T Consensus 53 E~~r~~~~v~~l~~~~-~~p-lsIDT~~~~v~eaaL~~~~-G~~i--INsIs~~~ 102 (261)
T PRK07535 53 EPETMEWLVETVQEVV-DVP-LCIDSPNPAAIEAGLKVAK-GPPL--INSVSAEG 102 (261)
T ss_pred HHHHHHHHHHHHHHhC-CCC-EEEeCCCHHHHHHHHHhCC-CCCE--EEeCCCCC
Confidence 22333333 32211 222 4578999999999998765 3344 44555543
No 134
>PRK10341 DNA-binding transcriptional activator TdcA; Provisional
Probab=20.59 E-value=9e+02 Score=24.53 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHHHHHHHHc-------------CCCCCcccCCCcchhhHHHHH
Q psy4522 68 IDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRN-------------LSNRPILVDCQDVTPAVNAVK 134 (560)
Q Consensus 68 i~~~~l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~lH~aLR~-------------~~~~~~~~~g~~~~~~v~~~~ 134 (560)
.+.+.++.|..+++...+..+-+.|+ .| .+++-.++|. ..+-.....|+.+.+.+...+
T Consensus 7 ~~~~~L~~F~av~e~gs~s~AA~~L~------iS--QpavS~~I~~LE~~lg~~LF~R~~r~~~lT~~G~~l~~~a~~il 78 (312)
T PRK10341 7 PKTQHLVVFQEVIRSGSIGSAAKELG------LT--QPAVSKIINDIEDYFGVELIVRKNTGVTLTPAGQVLLSRSESIT 78 (312)
T ss_pred ccHHHHHHHHHHHHcCCHHHHHHHhC------CC--hHHHHHHHHHHHHHhCCeEEEEcCCCceEChhHHHHHHHHHHHH
Confidence 36678999999999999999999887 22 2455555542 222223456888888888888
Q ss_pred HHHHHHHHHHHcCcccccCCCCcCeEEEEcccCC---chhHHHHHHHhcCCCCCCeEEEEecCC
Q psy4522 135 QHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGS---DLGPLMVTEALKPYAVGPRVHFVSNID 195 (560)
Q Consensus 135 ~~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS---~LGp~~~~~al~~~~~~~~~~f~~n~D 195 (560)
..++++.+.+.+-. + ....-|.||+..+ .+.|.++......+ +..++.+.....
T Consensus 79 ~~~~~~~~~~~~~~-----~-~~~~~l~ig~~~~~~~~~l~~~l~~~~~~~-p~v~i~~~~~~~ 135 (312)
T PRK10341 79 REMKNMVNEINGMS-----S-EAVVDVSFGFPSLIGFTFMSDMINKFKEVF-PKAQVSMYEAQL 135 (312)
T ss_pred HHHHHHHHHHHHHc-----C-CCceEEEEEechHHhHhhHHHHHHHHHHhC-CCCEEEEEeCCH
Confidence 88888888876521 1 1233567777543 44455554444332 346666665333
No 135
>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional
Probab=20.58 E-value=8.8e+02 Score=24.39 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHhhcHHHHHHHhhCCccCCCcchHHHHHHHHH-------------cCCCCCcccCCCcchhhHHHHHH
Q psy4522 69 DDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALR-------------NLSNRPILVDCQDVTPAVNAVKQ 135 (560)
Q Consensus 69 ~~~~l~~L~~la~~~~l~~~~~~~f~G~~in~te~r~~lH~aLR-------------~~~~~~~~~~g~~~~~~v~~~~~ 135 (560)
|-..++.|..+++.-.+.++-+.|. .| .+++...++ ...+-..+..|..+.+.....++
T Consensus 2 ~l~~L~~f~~v~~~gS~s~AA~~L~------it--QpavS~~i~~LE~~lg~~LF~R~~r~~~lT~~G~~l~~~a~~~l~ 73 (305)
T PRK11151 2 NIRDLEYLVALAEHRHFRRAADSCH------VS--QPTLSGQIRKLEDELGVMLLERTSRKVLFTQAGLLLVDQARTVLR 73 (305)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHhC------CC--chHHHHHHHHHHHHhCchheeeCCCceeECccHHHHHHHHHHHHH
Confidence 4466888888999888888888876 22 234444443 23332233457778888888888
Q ss_pred HHHHHHHHHHcCcccccCCCCcCeEEEEcccCC---chhHHHHHHHhcCCCCCCeEEEEecCChhHHHHH
Q psy4522 136 HMKEFSEQVISQKWLGYTGKPITDVVNIGIGGS---DLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEV 202 (560)
Q Consensus 136 ~i~~fa~~ir~g~~~g~~g~~i~~vV~iGiGGS---~LGp~~~~~al~~~~~~~~~~f~~n~Dp~~~~~~ 202 (560)
++.++.+.++... +.....|.||+-.| .+.+..+.+....+ ++.++.+..+.+...+..+
T Consensus 74 ~~~~~~~~~~~~~------~~~~g~l~i~~~~~~~~~~~~~~l~~~~~~~-P~v~i~~~~~~~~~~~~~l 136 (305)
T PRK11151 74 EVKVLKEMASQQG------ETMSGPLHIGLIPTVGPYLLPHIIPMLHQTF-PKLEMYLHEAQTHQLLAQL 136 (305)
T ss_pred HHHHHHHHHHHhc------ccCCceEEEEecchhHHHHHHHHHHHHHHHC-CCcEEEEEeCCHHHHHHHH
Confidence 8888877665421 12334667777554 55666666555433 3466666654443333333
No 136
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=20.35 E-value=2.1e+02 Score=31.31 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=37.5
Q ss_pred CeEEEEcccCCchhHHHHHHHhcCCCCCCeEEEEe-cCChhHHHHHHhhcCCC
Q psy4522 158 TDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVS-NIDGTHLAEVLKKVNPE 209 (560)
Q Consensus 158 ~~vV~iGiGGS~LGp~~~~~al~~~~~~~~~~f~~-n~Dp~~~~~~l~~l~~~ 209 (560)
+.|+++|.-||. |...+ ++++.+....++.-+. +.+.+.+.+..+...|+
T Consensus 2 k~VaILGsTGSI-G~~tL-~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~ 52 (385)
T PRK05447 2 KRITILGSTGSI-GTQTL-DVIRRNPDRFRVVALSAGKNVELLAEQAREFRPK 52 (385)
T ss_pred ceEEEEcCChHH-HHHHH-HHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCC
Confidence 469999988884 87754 5665443456777776 88899999999998884
No 137
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=20.06 E-value=4.9e+02 Score=26.96 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHHHhhcHHH
Q psy4522 66 NRIDDQGMNLLFELAKARKIEE 87 (560)
Q Consensus 66 q~i~~~~l~~L~~la~~~~l~~ 87 (560)
..||.+.++.+.+..-+.|+..
T Consensus 16 g~iD~~~l~~lv~~~~~~Gv~g 37 (294)
T TIGR02313 16 GDIDEEALRELIEFQIEGGSHA 37 (294)
T ss_pred CCcCHHHHHHHHHHHHHcCCCE
Confidence 3699999999998766666543
Done!