RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4522
(560 letters)
>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A
2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A
1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A
1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ...
Length = 557
Score = 1051 bits (2720), Expect = 0.0
Identities = 377/552 (68%), Positives = 449/552 (81%), Gaps = 3/552 (0%)
Query: 8 SPLLEEPVCKKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDFSKNR 67
+ L P +KL E+++ + + ELF+ DP RF FSL + T G+IL+D+SKN
Sbjct: 2 AALTRNPQFQKLLEWHRANSANLKLRELFEADPERFNNFSLNLNTNH--GHILVDYSKNL 59
Query: 68 IDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRNLSNRPILVDCQDVT 127
+ + M +L ELAK+R +E AR+ MF+G +IN+TEDRAVLHVALRN SN PI VD +DV
Sbjct: 60 VSKEVMQMLVELAKSRGVEAARDNMFSGSKINYTEDRAVLHVALRNRSNTPIKVDGKDVM 119
Query: 128 PAVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAV-GP 186
P VN V MK F ++V S W GYTGK ITD++NIGIGGSDLGPLMVTEALKPY+ GP
Sbjct: 120 PEVNRVLDKMKSFCQRVRSGDWKGYTGKSITDIINIGIGGSDLGPLMVTEALKPYSKGGP 179
Query: 187 RVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASV 246
RV FVSNIDGTH+A+ L ++PET LFI+ASKTFTTQETITNA +AK WFL+ +KDP++V
Sbjct: 180 RVWFVSNIDGTHIAKTLASLSPETSLFIIASKTFTTQETITNAETAKEWFLEAAKDPSAV 239
Query: 247 AKHFVALSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNIGYNNFERLLAG 306
AKHFVALSTN KV EFGID NMF FWDWVGGRYSLWSAIGLSIAL++G+++FE+LL+G
Sbjct: 240 AKHFVALSTNTAKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDHFEQLLSG 299
Query: 307 AHFMDNHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMES 366
AH+MD HF TP+ KNAPV+LALLG+WY N +G ETHALLPYDQY+HRFAAYFQQGDMES
Sbjct: 300 AHWMDQHFLKTPLEKNAPVLLALLGIWYINCYGCETHALLPYDQYMHRFAAYFQQGDMES 359
Query: 367 NGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNPIENN 426
NGKY+T+ G V++ TGPIVWGEPGTNGQHAFYQLIHQGTK+IP DF+ P +Q+PI
Sbjct: 360 NGKYITKSGARVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKG 419
Query: 427 LHHKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQGNRPTNSIVV 486
LHHKILL+NFLAQTEAL KGK P EA EL+A G E ++K+LPHKVF+GNRPTNSIV
Sbjct: 420 LHHKILLANFLAQTEALMKGKLPEEARKELQAAGKSPEDLEKLLPHKVFEGNRPTNSIVF 479
Query: 487 KKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQDKNPVTSHD 546
K+TPF LGALIAMYEHKIFVQGI+WDINS+DQWGVELGKQLAK IEPEL+ + VTSHD
Sbjct: 480 TKLTPFILGALIAMYEHKIFVQGIMWDINSFDQWGVELGKQLAKKIEPELEGSSAVTSHD 539
Query: 547 ASTNGLINFLKS 558
+STNGLI+F+K
Sbjct: 540 SSTNGLISFIKQ 551
>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose;
phosphoglucose isomerase, substrate,
D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania
mexicana mexicana} SCOP: c.80.1.2
Length = 605
Score = 1026 bits (2656), Expect = 0.0
Identities = 323/559 (57%), Positives = 407/559 (72%), Gaps = 9/559 (1%)
Query: 7 PSPLLEEPVCKKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDFSKN 66
S LL P K+L+ Y+ G + F+KD RF+++S+ I D+ + +D+SK+
Sbjct: 47 DSSLLNLPAWKRLQSLYEKYG-NDSILSHFEKDHQRFQRYSIEIDLHSDDNFLFLDYSKS 105
Query: 67 RIDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRNLSNRPILVDCQDV 126
I+D+ + L LA+ R + + MF+G+R+N TE+RAVLHVALRN SNRPI+VD +DV
Sbjct: 106 HINDEIKDALVALAEERGVRAFAKAMFDGQRVNSTENRAVLHVALRNRSNRPIIVDGKDV 165
Query: 127 TPAVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAV-G 185
VN V MK+F+E+V S +W G TGK I ++VNIGIGGSDLGP+MVTEALKP++
Sbjct: 166 MSDVNNVLAQMKDFTERVRSGEWKGQTGKSIYNIVNIGIGGSDLGPVMVTEALKPFSKRD 225
Query: 186 PRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKD--- 242
FVSN+DGTH+AEVLK+VN E +FI+ASKTFTTQET+TNA SA+N + + K+
Sbjct: 226 LHCFFVSNVDGTHMAEVLKQVNLEETIFIIASKTFTTQETLTNAMSARNALMSYLKENGI 285
Query: 243 --PASVAKHFVALSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNIGYNNF 300
+VAKHFVALSTN KV EFGIDT NMF FWDWVGGRYS+WSAIGLS+ L+IGY+NF
Sbjct: 286 STDGAVAKHFVALSTNTEKVREFGIDTVNMFAFWDWVGGRYSVWSAIGLSVMLSIGYDNF 345
Query: 301 ERLLAGAHFMDNHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQ 360
L GAH MDNHF +TP +N P++LAL+G+WY NFFGSET A+LPYDQYL R AY Q
Sbjct: 346 VEFLTGAHVMDNHFASTPTEQNLPMMLALVGIWYNNFFGSETQAVLPYDQYLWRLPAYLQ 405
Query: 361 QGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQ 420
Q DMESNGK VT++ V TGPIV+GE GTNGQHAFYQLIHQGTK+IP DFI +Q
Sbjct: 406 QLDMESNGKGVTKKSGAVAVQTGPIVFGEAGTNGQHAFYQLIHQGTKIIPCDFIGCVQTQ 465
Query: 421 NPIENNLHHKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQGNRP 480
N + + HH+ L+SNF AQTEAL GK+ E EL +GM + ++ ++PHK F G+RP
Sbjct: 466 NRVGD--HHRTLMSNFFAQTEALMVGKNAEEVRQELVKSGMSGDAIENMIPHKTFTGSRP 523
Query: 481 TNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQDKN 540
+NSI+V +TP LGA+IAMYEHK+ VQG IW INSYDQWGVELGK LAK+I P+L+ N
Sbjct: 524 SNSILVNALTPRALGAIIAMYEHKVLVQGAIWGINSYDQWGVELGKVLAKSILPQLKSGN 583
Query: 541 PVTSHDASTNGLINFLKSY 559
V+ HD STNGLIN +
Sbjct: 584 IVSDHDGSTNGLINMFNTR 602
>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, gluconeogenesi
glycolysis, structural genomics, center for STRU
genomics of infectious diseases; HET: PG4; 1.50A {Vibrio
cholerae} PDB: 3nbu_A
Length = 574
Score = 1024 bits (2650), Expect = 0.0
Identities = 356/548 (64%), Positives = 417/548 (76%), Gaps = 8/548 (1%)
Query: 12 EEPVCKKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDFSKNRIDDQ 71
+ K L ++++ ++ LF +D RF K+S +IL+D+SKN ++ +
Sbjct: 33 QTQAWKALTAHFES-AQDMDLKALFAQDSERFAKYSARFGQ-----DILVDYSKNLVNAE 86
Query: 72 GMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRNLSNRPILVDCQDVTPAVN 131
M LF LAK ++ A MF GE IN TEDRAVLH ALRN SN P+LV+ +DV PAVN
Sbjct: 87 TMQHLFALAKETDLQSAITAMFKGEAINQTEDRAVLHTALRNRSNSPVLVNGEDVMPAVN 146
Query: 132 AVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFV 191
AV MK FSE+VI +W G+TGK ITDVVNIGIGGSDLGP MVTEAL PY VHFV
Sbjct: 147 AVLAKMKAFSERVIGGEWKGFTGKAITDVVNIGIGGSDLGPYMVTEALVPYKNHLTVHFV 206
Query: 192 SNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFV 251
SN+DGTH+AE LK V+PET LF+VASKTFTTQET+TNA +A++WFL+ + D A VAKHF
Sbjct: 207 SNVDGTHMAETLKNVDPETTLFLVASKTFTTQETMTNAHTARDWFLKAAGDEAHVAKHFA 266
Query: 252 ALSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNIGYNNFERLLAGAHFMD 311
ALSTN VAEFGIDT NMF FWDWVGGRYSLWSAIGLSI L+IGY+NF LLAGAH MD
Sbjct: 267 ALSTNGKAVAEFGIDTDNMFEFWDWVGGRYSLWSAIGLSIILSIGYDNFVELLAGAHEMD 326
Query: 312 NHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMESNGKYV 371
HF NTP N PVILAL+G+WY NF G+E+ A+LPYDQYLHRFAAYFQQG+MESNGKYV
Sbjct: 327 QHFVNTPFESNIPVILALIGIWYNNFHGAESEAILPYDQYLHRFAAYFQQGNMESNGKYV 386
Query: 372 TRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNPIENNLHHKI 431
R G V Y TGPI+WGEPGTNGQHAFYQLIHQGTKLIP DFIAPA+S N + + HH+
Sbjct: 387 DRNGNPVTYQTGPIIWGEPGTNGQHAFYQLIHQGTKLIPCDFIAPAVSHNLVGD--HHQK 444
Query: 432 LLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQGNRPTNSIVVKKITP 491
L+SNF AQTEALA GKS +AEL+ G A + ++P KVF+GNRPTNSI+VK+ITP
Sbjct: 445 LMSNFFAQTEALAFGKSAQAVQAELEKAGKSAAEIAALVPFKVFEGNRPTNSILVKQITP 504
Query: 492 FTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQDKNPVTSHDASTNG 551
TLG LIAMYEHKIFVQG+IW+I S+DQWGVELGKQLA I PEL D VTSHD+STNG
Sbjct: 505 RTLGNLIAMYEHKIFVQGVIWNIFSFDQWGVELGKQLANQILPELADSAAVTSHDSSTNG 564
Query: 552 LINFLKSY 559
LIN K++
Sbjct: 565 LINAFKAF 572
>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose;
dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB:
2o2d_A* 1q50_A
Length = 613
Score = 1016 bits (2628), Expect = 0.0
Identities = 323/567 (56%), Positives = 400/567 (70%), Gaps = 11/567 (1%)
Query: 1 MVSGEVPSPLLEEPVCKKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPG-DEGNI 59
V + + L +L++ Y+ G + F+ D R +++S+ + DE +
Sbjct: 41 GVGADADTTLTSCASWTQLQKLYEQYG-DEPIKKHFETDSERGQRYSVKVSLGSKDENFL 99
Query: 60 LIDFSKNRIDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRNLSNRPI 119
+D+SK+ I+D+ L LA+ R I + + +F GER+N TE+R VLH+ALRN SNRPI
Sbjct: 100 FLDYSKSHINDEIKCALLRLAEERGIRQFVQSVFRGERVNTTENRPVLHIALRNRSNRPI 159
Query: 120 LVDCQDVTPAVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEAL 179
VD +DV PAVN V M+ FSE+V + +W G+TGK I VVNIGIGGSDLGP+M TEAL
Sbjct: 160 YVDGKDVMPAVNKVLDQMRSFSEKVRTGEWKGHTGKAIRHVVNIGIGGSDLGPVMATEAL 219
Query: 180 KPYAV-GPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQ 238
KP++ +HFVSN+DGTH+AEVLK ++ E LFIVASKTFTTQETITNA SA+ L
Sbjct: 220 KPFSQRDLSLHFVSNVDGTHIAEVLKSIDIEATLFIVASKTFTTQETITNALSARRALLD 279
Query: 239 HSK-----DPASVAKHFVALSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIAL 293
+ + + SVAKHFVALSTN KV EFGID NMF FWDWVGGRYS+WSAIGL I +
Sbjct: 280 YLRSRGIDEKGSVAKHFVALSTNNQKVKEFGIDEENMFQFWDWVGGRYSMWSAIGLPIMI 339
Query: 294 NIGYNNFERLLAGAHFMDNHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLH 353
+IGY NF LL GAH +D HF N P +N P++LAL+GVWY NFFG+ THA+LPYDQYL
Sbjct: 340 SIGYENFVELLTGAHVIDEHFANAPPEQNVPLLLALVGVWYINFFGAVTHAILPYDQYLW 399
Query: 354 RFAAYFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADF 413
R AY QQ DMESNGKYVTR G V+ TGPI++GE GTNGQHAFYQLIHQGT LIP DF
Sbjct: 400 RLPAYLQQLDMESNGKYVTRSGKTVSTLTGPIIFGEAGTNGQHAFYQLIHQGTNLIPCDF 459
Query: 414 IAPAISQNPIENNLHHKILLSNFLAQTEALAKGKSPAEAEAELKATG-MPAETVKKILPH 472
I SQN I + HHKI +SNF AQTEAL GKSP+E EL+A G AE + +LPH
Sbjct: 460 IGAIQSQNKIGD--HHKIFMSNFFAQTEALMIGKSPSEVRRELEAAGERSAEKINALLPH 517
Query: 473 KVFQGNRPTNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAI 532
K F G RP+N++++K +TP LGA+IAMYEHK+ VQG IW I+SYDQWGVELGK LAK+I
Sbjct: 518 KTFIGGRPSNTLLIKSLTPRALGAIIAMYEHKVLVQGAIWGIDSYDQWGVELGKVLAKSI 577
Query: 533 EPELQDKNPVTSHDASTNGLINFLKSY 559
P+L+ V +HD+STNGLIN
Sbjct: 578 LPQLRPGMRVNNHDSSTNGLINMFNEL 604
>4em6_D Glucose-6-phosphate isomerase; GPI, phosphoglucose isomerase
phosphohexose isomerase, PHI, ssgcid; 1.90A {Brucella
melitensis BV}
Length = 553
Score = 1015 bits (2626), Expect = 0.0
Identities = 275/550 (50%), Positives = 368/550 (66%), Gaps = 9/550 (1%)
Query: 9 PLLEEPVCKKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDFSKNRI 68
E KL++++ + + + F DP RF ++SL + ++L D+SK R+
Sbjct: 9 ATKLEATVAKLKKHWAES-APRDMRAAFSADPGRFGRYSLCL------DDLLFDWSKCRV 61
Query: 69 DDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRNLSNRPILVDCQDVTP 128
+D+ M LL ELA A +E R MF GE IN TEDRAVLHVALR+ S++ +LVD +V P
Sbjct: 62 NDETMALLKELAVAADVEGRRAAMFAGEHINNTEDRAVLHVALRDTSSKEVLVDGHNVLP 121
Query: 129 AVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRV 188
V V M F++ + S G TG+ ITD+VNIGIGGSDLGP+M T AL PY PR
Sbjct: 122 DVKHVLDRMAAFADGIRSGALKGATGRKITDIVNIGIGGSDLGPVMATLALAPYHDEPRA 181
Query: 189 HFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAK 248
HFVSNIDG H+A+ L ++P + L IVASKTFTT ET+TNA +A+ W + A V
Sbjct: 182 HFVSNIDGAHIADTLSPLDPASTLIIVASKTFTTIETMTNAQTARKWVADTLGEAA-VGA 240
Query: 249 HFVALSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNIGYNNFERLLAGAH 308
HF A+ST KVA FGI +FGFWDWVGGRYS+WSAIGL + + +G +NF + LAGAH
Sbjct: 241 HFAAVSTALDKVAAFGIPEDRVFGFWDWVGGRYSVWSAIGLPVMIAVGPDNFRKFLAGAH 300
Query: 309 FMDNHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMESNG 368
MD HF++ P+ KN PV+L L+G W+ G + A++PYDQ L R AY QQ DMESNG
Sbjct: 301 AMDVHFRDAPLEKNLPVMLGLIGYWHRAICGYGSRAIIPYDQRLSRLPAYLQQLDMESNG 360
Query: 369 KYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNPIENNLH 428
K VT G V+ TGP+VWGEPGTNGQHAF+QL+HQGT IP +FI A P ++
Sbjct: 361 KSVTLDGKPVSGPTGPVVWGEPGTNGQHAFFQLLHQGTDTIPLEFIVAAKGHEPTLDH-Q 419
Query: 429 HKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQGNRPTNSIVVKK 488
H++L++N LAQ+EAL KG++ EA A+L+A +PA V++I PH+VF GNRP+ +++
Sbjct: 420 HEMLMANCLAQSEALMKGRTLDEARAQLQAKNLPASQVERIAPHRVFSGNRPSLTLIHDM 479
Query: 489 ITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQDKNPVTSHDAS 548
+ P+TLG LIA+YEH++FV+ I+ IN++DQWGVELGK+LA + P + K + DAS
Sbjct: 480 LDPYTLGRLIALYEHRVFVEAQIFGINAFDQWGVELGKELATELLPVVSGKEGASGRDAS 539
Query: 549 TNGLINFLKS 558
T GL+ L +
Sbjct: 540 TQGLVAHLHA 549
>3ljk_A Glucose-6-phosphate isomerase; structural genomics, IDP02733,
cytoplasm, gluconeogenesis, glycolysis; HET: MSE MES;
1.48A {Francisella tularensis} PDB: 3m5p_A* 3q7i_A*
3q88_A*
Length = 543
Score = 1013 bits (2621), Expect = 0.0
Identities = 276/545 (50%), Positives = 364/545 (66%), Gaps = 12/545 (2%)
Query: 17 KKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDFSKNRIDDQGMNLL 76
+ Y IN F KD R EKFSL NI D+SKN I+D + L
Sbjct: 7 CDDSKKYLKE-QNINLKNEFDKDDKRVEKFSLKH------QNIYFDYSKNLINDYILKSL 59
Query: 77 FELAKARKIEEAREKMFNGERINFTEDRAVLHVALRNLSNRPILVDCQDVTPAVNAVKQH 136
E A+ +++ ++MFNG +IN TE RAVLH ALR+LS+ P++VD QD+ V KQ
Sbjct: 60 LESAEKSSLKDKIKQMFNGAKINSTEHRAVLHTALRDLSSTPLIVDGQDIRQEVTKEKQR 119
Query: 137 MKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAV-GPRVHFVSNID 195
+KE E+V+S +W G++GK ITD+VNIGIGGSDLGP MV AL+PY +VHFVSN+D
Sbjct: 120 VKELVEKVVSGRWRGFSGKKITDIVNIGIGGSDLGPKMVVRALQPYHCTDLKVHFVSNVD 179
Query: 196 GTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALST 255
L + L V+PET L I+ASK+F+T+ET+ N+ SA+ W L H +D +VA HFVA+S+
Sbjct: 180 ADSLLQALHVVDPETTLLIIASKSFSTEETLLNSISAREWLLDHYEDEKAVANHFVAISS 239
Query: 256 NAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNIGYNNFERLLAGAHFMDNHFQ 315
KV EFGID + + WDWVGGRYSLWS+IG+SIA IGY+NFE+LLAGA+ +D HF+
Sbjct: 240 KLDKVKEFGIDLEHCYKMWDWVGGRYSLWSSIGMSIAFAIGYDNFEKLLAGAYSVDKHFK 299
Query: 316 NTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMESNGKYVTRQG 375
T +KN PVI+ALL +Y + S++ ALLPYD+ L F Y QQ DMESNGK V G
Sbjct: 300 ETEFSKNIPVIMALLASYYSCTYNSQSQALLPYDERLCYFVDYLQQADMESNGKSVNIAG 359
Query: 376 TVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNPIENNLHHKILLSN 435
VNY TG ++WG GTNGQHAF+QL+HQG IP DFIA A S + +N H + LL+N
Sbjct: 360 ETVNYQTGVVLWGGVGTNGQHAFHQLLHQGNIFIPVDFIAIATSHHNYDN--HQQALLAN 417
Query: 436 FLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQGNRPTNSIVVKKITPFTLG 495
AQ++AL G+S EL +G+ K++ HKV GNRP+ +I++ +++P++LG
Sbjct: 418 CFAQSQALMFGQSYDMVYNELLKSGLNETQAKELAAHKVIPGNRPSTTILLDELSPYSLG 477
Query: 496 ALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQDK--NPVTSHDASTNGLI 553
ALIA+YEHKIFVQG++WDINSYDQWGVELGK+L K I + D + + D ST LI
Sbjct: 478 ALIALYEHKIFVQGVLWDINSYDQWGVELGKKLGKNILKAMNDDSSDEYQNLDDSTRQLI 537
Query: 554 NFLKS 558
+K+
Sbjct: 538 AKVKN 542
>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis,
5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis;
2.25A {Mycobacterium tuberculosis}
Length = 549
Score = 992 bits (2568), Expect = 0.0
Identities = 262/551 (47%), Positives = 354/551 (64%), Gaps = 22/551 (3%)
Query: 14 PVCKKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDFSKNRIDDQGM 73
P L ++ G + + F DP R + ++++ G++ ID+SK+R+ + +
Sbjct: 7 PAWDALARHHDQIG-NTHLRQFFADDPGRGRELTVSV------GDLYIDYSKHRVTRETL 59
Query: 74 NLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRNLSNRPILVDCQDVTPAVNAV 133
LL +LA+ +EE R++MF G IN +EDRAVLH ALR + ++VD QDV V+AV
Sbjct: 60 ALLIDLARTAHLEERRDQMFAGVHINTSEDRAVLHTALRLPRDAELVVDGQDVVTDVHAV 119
Query: 134 KQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAV-GPRVHFVS 192
M F++++ S +W G TGK I+ VVNIGIGGSDLGP+MV +AL+ YA G FVS
Sbjct: 120 LDAMGAFTDRLRSGEWTGATGKRISTVVNIGIGGSDLGPVMVYQALRHYADAGISARFVS 179
Query: 193 NIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVA 252
N+D L L ++P T LFIVASKTF+T ET+TNAT+A+ W D A V++HFVA
Sbjct: 180 NVDPADLIATLADLDPATTLFIVASKTFSTLETLTNATAARRWLTDALGDAA-VSRHFVA 238
Query: 253 LSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNIGYNNFERLLAGAHFMDN 312
+STN V +FGI+T NMFGFWDWVGGRYS+ SAIGLS+ IG + F LAG H +D
Sbjct: 239 VSTNKRLVDDFGINTDNMFGFWDWVGGRYSVDSAIGLSLMTVIGRDAFADFLAGFHIIDR 298
Query: 313 HFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMESNGKYVT 372
HF P+ NAPV+L L+G+WY NFFG+++ +LPY L RF AY QQ MESNGK
Sbjct: 299 HFATAPLESNAPVLLGLIGLWYSNFFGAQSRTVLPYSNDLSRFPAYLQQLTMESNGKSTR 358
Query: 373 RQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNPI----ENNLH 428
G+ V+ TG I WGEPGTNGQHAFYQL+HQGT+L+PADFI A + +
Sbjct: 359 ADGSPVSADTGEIFWGEPGTNGQHAFYQLLHQGTRLVPADFIGFAQPLDDLPTAEGTGSM 418
Query: 429 HKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQGNRPTNSIVVKK 488
H +L+SNF AQT+ LA GK+ E A+ ++ HKV GNRP+ SI+ +
Sbjct: 419 HDLLMSNFFAQTQVLAFGKTAEEIAADGTP--------AHVVAHKVMPGNRPSTSILASR 470
Query: 489 ITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQDKN-PVTSHDA 547
+TP LG LIA+YEH++F +G++W I+S+DQWGVELGK AKA+ P + P D+
Sbjct: 471 LTPSVLGQLIALYEHQVFTEGVVWGIDSFDQWGVELGKTQAKALLPVITGAGSPPPQSDS 530
Query: 548 STNGLINFLKS 558
ST+GL+ ++
Sbjct: 531 STDGLVRRYRT 541
>3ujh_A Glucose-6-phosphate isomerase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease; HET: G6Q;
2.10A {Toxoplasma gondii}
Length = 567
Score = 961 bits (2487), Expect = 0.0
Identities = 232/566 (40%), Positives = 338/566 (59%), Gaps = 30/566 (5%)
Query: 7 PSPLLEEPVCKKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDFSKN 66
P+ L + KL + + K++ +L K + T + +DFS+
Sbjct: 7 PTQLEQCASHGKLLQEKKKL-EKLHLRDLLKDEARNDLLIRSTD------QGVYLDFSRQ 59
Query: 67 RIDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALR-NLSNRPILVDCQD 125
+I + + L LA R++ ++MF+GE+IN TE+RAVLHVALR + P+ VD ++
Sbjct: 60 KITLETLQHLVNLAHERQVPAMVKRMFSGEKINQTENRAVLHVALRMPEGSEPVHVDGKN 119
Query: 126 VTPAVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAV- 184
V V+AV + ++ FSE+V S + G+TGK + +V++IGIGGS LG V AL
Sbjct: 120 VLDEVHAVLRRIRVFSEKVRSGEIRGHTGKKLVNVISIGIGGSYLGTEFVHLALAAEGYA 179
Query: 185 -----GPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQH 239
G ++HF++N+D + + +PE L +V SKTFTT ET+ NA S ++W+L H
Sbjct: 180 AEKAHGRQIHFLANVDPVDVWLAERGFDPEETLVVVISKTFTTAETMMNARSVRDWYLHH 239
Query: 240 SK-DPASVAKHFVALSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIG-LSIALNIGY 297
K D ++ HF A+STN ++FGI + +FGFWDWVGGRYS+ SA+G L +AL GY
Sbjct: 240 YKGDERALGAHFCAVSTNLDGTSKFGIQSDRVFGFWDWVGGRYSVTSAVGILPLALQYGY 299
Query: 298 NNFERLLAGAHFMDNHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAA 357
+ + L GAH MD HF+ + N P+++ L+ VW FFG A+LPY Q L RF A
Sbjct: 300 DVAQEFLNGAHAMDVHFKTAELADNLPMLMGLISVWNATFFGYSNVAVLPYAQALLRFPA 359
Query: 358 YFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPA 417
+ QQ MESNGK VT G +++ G I +GEPGTNGQH+FYQLIHQG ++IPA+FI
Sbjct: 360 HIQQLTMESNGKRVTMDGKTLDFDVGEIFFGEPGTNGQHSFYQLIHQG-RVIPAEFIGFC 418
Query: 418 ISQNPIENNL----HHKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHK 473
SQ I+ +H L+SNF AQ +ALA GK+P E E +K++PHK
Sbjct: 419 KSQRAIKLKEEPVSNHDELMSNFFAQPDALAFGKTPEELRKEGIP--------EKLVPHK 470
Query: 474 VFQGNRPTNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIE 533
F G+RP+ ++ +I+PF +G L+A+YEH++ V+G +W INS+DQWGVELGK LAK +
Sbjct: 471 TFPGDRPSCMLLFPEISPFHIGQLLALYEHRVAVEGWLWGINSFDQWGVELGKVLAKGVR 530
Query: 534 PELQDKN-PVTSHDASTNGLINFLKS 558
LQ + H++ + L + +
Sbjct: 531 GILQKRREGKAPHESGQSELCSSTRK 556
>3qki_A Glucose-6-phosphate isomerase; structural genomics, structural
genomics consortium, SGC; 1.92A {Plasmodium falciparum}
PDB: 3pr3_A
Length = 597
Score = 957 bits (2477), Expect = 0.0
Identities = 207/580 (35%), Positives = 313/580 (53%), Gaps = 51/580 (8%)
Query: 17 KKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDFSKNRIDDQGMNLL 76
K+L + + + D R E N +D S+ R ++ +N L
Sbjct: 30 KELVTLSAEE-KTKDLKD-YLNDKNRSESLIKKF------KNFYMDLSRQRYSEKTLNKL 81
Query: 77 FELAKARKIEEAREKMFNGERINFTEDRAVLHVALR----NLSNRPILVDCQDVTPAVNA 132
E A+ ++++ EK F GE++N TE+R+VLH ALR ++ I++D ++V V+
Sbjct: 82 VEYAEEVELKKKVEKTFMGEKVNMTENRSVLHTALRIPIEKINTHKIIIDNKNVLEDVHG 141
Query: 133 VKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAV-------- 184
V + ++++S+ + + +V+ IGIGGS LG V EA+K Y
Sbjct: 142 VLKKIEKYSDDIRNGVIKTCKNTKFKNVICIGIGGSYLGTEFVYEAMKYYYYNMELNKNE 201
Query: 185 ---------------GPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNA 229
V F++N+D + ++ ++ L I+ SKTFTT ET+ NA
Sbjct: 202 KDQVNNFNNNYDQDNVFNVRFLANVDPNDVNRAIQNLDQYDTLVIIISKTFTTAETMLNA 261
Query: 230 TSAKNWFLQHSKDPASVAKHFVALSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIG- 288
S K W KD +++KH VA+STN EFGI N+F FWDWVGGR+S+ S++G
Sbjct: 262 RSIKKWLSLKIKDDENLSKHMVAVSTNLKLTDEFGISRDNVFEFWDWVGGRFSVTSSVGI 321
Query: 289 LSIALNIGYNNFERLLAGAHFMDNHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPY 348
L +++ GY N L G H MD HF + + +N PV+LAL + +FF + A+LPY
Sbjct: 322 LPLSIAFGYKNMRNFLNGCHDMDEHFLHADLKENIPVLLALTSFYNSHFFDYKNVAILPY 381
Query: 349 DQYLHRFAAYFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKL 408
Q L +F+A+ QQ MESNGK V R ++Y+T + +GEPGTNGQH+FYQLIHQG ++
Sbjct: 382 FQNLLKFSAHIQQLSMESNGKSVDRNNQPIHYNTCQVYFGEPGTNGQHSFYQLIHQG-QV 440
Query: 409 IPADFIAPAISQNPI----ENNLHHKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAE 464
IP + I S PI E +H L++NF AQ +ALA GK+ + + E + M E
Sbjct: 441 IPVELIGFKHSHFPIKFDKEVVSNHDELMTNFFAQADALAIGKTYEQVKEENEKNKMSPE 500
Query: 465 TVKKILPHKVFQGNRPTNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVEL 524
+L HKVF GNRP+ ++ ++ +T G L+++YE +I +G + +INS+DQWGVEL
Sbjct: 501 ----LLTHKVFNGNRPSTLLLFDELNFYTCGLLLSLYESRIVAEGFLLNINSFDQWGVEL 556
Query: 525 GKQLAKAIEPELQDKN------PVTSHDASTNGLINFLKS 558
GK LAK + D + + ST L+N+ S
Sbjct: 557 GKVLAKEVRNYFNDTRNQKKSDNTYNFNESTKILLNYYLS 596
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken
structural genomics/PR initiative, RSGI, NPPSFA; 1.95A
{Thermus thermophilus}
Length = 415
Score = 644 bits (1664), Expect = 0.0
Identities = 101/450 (22%), Positives = 173/450 (38%), Gaps = 48/450 (10%)
Query: 89 REKMFNGERINFTEDRAVLHVA---LRNLSNRPILVDCQDVTPAVNAVKQHMKEFSEQVI 145
+ G + +L A L P + P + ++ + E
Sbjct: 5 DTRFLPGFPEALSRHGPLLEEARRRLLAKRGEPGSMLGWMDLPEDTETLREVRRYRE--- 61
Query: 146 SQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKK 205
+ D V IGIGGS LGP + A G R H++ +++ + +L+
Sbjct: 62 -------ANPWVEDFVLIGIGGSALGPKALEAAFNES--GVRFHYLDHVEPEPILRLLRT 112
Query: 206 VNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKVAEFGI 265
++P L SK+ +T ET+ W H + +H V +
Sbjct: 113 LDPRKTLVNAVSKSGSTAETLAGLAVFLKWLKAHLGEDW--RRHLVVTTDPKEGPLRAFA 170
Query: 266 DT--ANMFGFWDWVGGRYSLWSAIGLSIALNIGYNNFERLLAGAHFMDNHFQNTPINKNA 323
+ F VGGR+S S +GL G + + LL GA + P+ ++
Sbjct: 171 EREGLKAFAIPKEVGGRFSALSPVGLLPLAFAGAD-LDALLMGARKANETALA-PLEESL 228
Query: 324 PVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMESNGKYVTRQGTVVNYSTG 383
P+ ALL + + H + Y + L ++F Q ES GK V RQG V +
Sbjct: 229 PLKTALLLHLHRHL---PVHVFMVYSERLSHLPSWFVQLHDESLGK-VDRQGQRVGTTAV 284
Query: 384 PIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNPIENNLHHKILLSNFLAQTEAL 443
P G QHA QL +G + P P+E +I L + +
Sbjct: 285 PA----LGPKDQHAQVQLFREGPLDKLLALVIPE---APLE---DVEIPEVEGL-EAASY 333
Query: 444 AKGKSPAEA-EAELKATGMPAETVKKILPHKVFQGNRPTNSIVVKKITPFTLGALIAMYE 502
GK+ + +AE +AT + + + ++ + +++P+ +G L+
Sbjct: 334 LFGKTLFQLLKAEAEAT-----------YEALAEAGQRVYALFLPEVSPYAVGWLMQHLM 382
Query: 503 HKIFVQGIIWDINSYDQWGVELGKQLAKAI 532
+ G +W++N++DQ GVELGK L +
Sbjct: 383 WQTAFLGELWEVNAFDQPGVELGKVLTRKR 412
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Length = 460
Score = 609 bits (1572), Expect = 0.0
Identities = 113/493 (22%), Positives = 189/493 (38%), Gaps = 55/493 (11%)
Query: 81 KARKIEEAREKMFNGERINFTEDRAVLHVALRNLSNRPILVDCQDVTPAVNAVKQHMKEF 140
+ KI M + F L++ + + VT AV ++ +F
Sbjct: 2 GSDKIHHHHHHM----SLKFDFSNLFEPNISGGLTDEDVKSVEEKVTSAVRNFVENTPDF 57
Query: 141 SEQVISQKWLGYTGK------PITDVVNIGIGGSDLGPLMVTEALKPYAV---------- 184
++ S W+ VV +GIGGS LG L + +L+P
Sbjct: 58 AKLDRS--WIDSVKSLEDWIINFDTVVVLGIGGSGLGNLALHYSLRPLNWNEMTREERNG 115
Query: 185 GPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPA 244
RV V N+D ++ VL +++P+T LF V SK+ +T E + + A+ + DP
Sbjct: 116 YARVFVVDNVDPDLMSSVLDRIDPKTTLFNVISKSGSTAEVMATYSIARGILEAYGLDPR 175
Query: 245 SVAKHFVALSTNAGKVAEFGIDTAN---MFGFWDWVGGRYSLWSAIGLSIALNIGYNNFE 301
+H + +T+ K + VGGR+S+ + +GL A+ G + +
Sbjct: 176 ---EHMLI-TTDPEKGFLRKLVKEEGFRSLEVPPGVGGRFSVLTPVGLLSAMAEGID-ID 230
Query: 302 RLLAGAHFMDNHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQ 361
L GA I +N ++AL Y N G ++ Y + +++Q
Sbjct: 231 ELHEGAKDAFEKSMKENILENPAAMIALTHYLYLNK-GKSISVMMAYSNRMIYLVDWYRQ 289
Query: 362 GDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQN 421
ES GK +G V P G QH+ QL ++G F+
Sbjct: 290 LWAESLGKRYNLKGEEVFTGQTP--VKALGATDQHSQIQLYNEGPNDKVITFLRV----- 342
Query: 422 PIENNLHHKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQGNRPT 481
EN ++ A+ LA+ K AE T + + NRP
Sbjct: 343 --ENFDREIVIPETGRAELSYLARKKLSELLLAEQTGT-----------EEALRENNRPN 389
Query: 482 NSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPEL-QDKN 540
+ +TP+ +G A YE G + +IN +DQ GVELGK++ A+ + ++
Sbjct: 390 MRVTFDGLTPYNVGQFFAYYEAATAFMGYLLEINPFDQPGVELGKKITFAL---MGREGY 446
Query: 541 PVTSHDASTNGLI 553
+ S +I
Sbjct: 447 TYEIKERSKKVII 459
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin,
crystallography motility; 2.30A {Geobacillus
stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A*
2pgi_A
Length = 445
Score = 353 bits (907), Expect = e-117
Identities = 94/487 (19%), Positives = 176/487 (36%), Gaps = 76/487 (15%)
Query: 59 ILIDFSK--NRIDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRNLSN 116
I D+S + + ++ L E ++ A + + ++ +
Sbjct: 3 ISFDYSNALPFMQENELDYLSE-----FVKAAHHMLHERK-GPGSDFLGWVDW------- 49
Query: 117 RPILVDCQDVTPAVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVT 176
PI D + +K+ +E++ + +V IGIGGS LG
Sbjct: 50 -PIRYDKNEF--------SRIKQAAERIRNH---------SDALVVIGIGGSYLGARAAI 91
Query: 177 EALKPY-----AVGPRVHFV-SNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNAT 230
EAL +++F NI T+++ +L + + + V SK+ TT E
Sbjct: 92 EALSHTFHNQMNDTTQIYFAGQNISSTYISHLLDVLEGKDLSINVISKSGTTTEPAIAFR 151
Query: 231 SAKNWFLQHSKDPASVAKHFVALSTNAGKV--AEFGIDTANMFGFWDWVGGRYSLWSAIG 288
+++ + K + + F D +GGRYS+ +A+G
Sbjct: 152 IFRDYMEKK-YGKEEARKRIYVTTDRTKGALKKLADQEGYETFVIPDNIGGRYSVLTAVG 210
Query: 289 LSIALNIGYNNFERLLAGAHFMDNHFQNTPINKNAPVILALL-GVWYGNFFGSETHALLP 347
L G N +R++ GA + + N + N A + + Y G L+
Sbjct: 211 LLPIAVAGLN-IDRMMEGAASAYHKYNNPDLLTNESYQYAAVRNILYRK--GKAIELLVN 267
Query: 348 YDQYLHRFAAYFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTK 407
Y+ LH + +++Q ES GK G T H+ Q + +G +
Sbjct: 268 YEPSLHYVSEWWKQLFGESEGKD----------QKGLFPASVDFTTDLHSMGQYVQEGRR 317
Query: 408 LIPADFIAPAISQNPIENNLHHKILLS-NFLAQTEALAKGKSPAEA-EAELKATGMPAET 465
+ + Q + + + NFLA GK+ E + + T
Sbjct: 318 NLIETVLHVKKPQIELTIQEDPENIDGLNFLA-------GKTLDEVNKKAFQGT------ 364
Query: 466 VKKILPHKVFQGNRPTNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELG 525
+L H G P + + ++ +T G ++ +E + G + +N +DQ GVE
Sbjct: 365 ---LLAHV--DGGVPNLIVELDEMNEYTFGEMVYFFEKACGISGHLLGVNPFDQPGVEAY 419
Query: 526 KQLAKAI 532
K+ A+
Sbjct: 420 KKNMFAL 426
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold,
gluconeogenesis, glycolysis, structural genomics; HET:
G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A*
Length = 446
Score = 312 bits (801), Expect = e-101
Identities = 89/409 (21%), Positives = 147/409 (35%), Gaps = 57/409 (13%)
Query: 137 MKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPY----AVGPRVHFVS 192
+ E S+++ +V IGIGGS LG E L P + FV
Sbjct: 65 IVEASKRIKEN---------SDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVG 115
Query: 193 N-IDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFV 251
N + T+ E++ + + V SK+ TT E K + K
Sbjct: 116 NHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQLVEER-YGKEEAQKRIF 174
Query: 252 ALSTNAG----KVA-EFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNIGYNNFERLLAG 306
A + ++A G +T F D VGGRYS+ +A+GL G N E ++ G
Sbjct: 175 ATTDKEKGALKQLATNEGYET---FIVPDDVGGRYSVLTAVGLLPIATAGIN-IEAMMIG 230
Query: 307 AHFMDNHFQNTPINKNAPVILALL-GVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDME 365
A + + +N A + + Y G T L+ Y+ + F +++Q E
Sbjct: 231 AAKAREELSSDKLEENIAYQYATIRNILYAK--GYTTEMLINYEPSMQYFNEWWKQLFGE 288
Query: 366 SNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNPIE- 424
S GK G T H+ Q + +G + + + + I
Sbjct: 289 SEGKD----------FKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVVKVNHPKYDITI 338
Query: 425 NNLHHKILLSNFLAQTEALAKGKSPAE-AEAELKATGMPAETVKKILPHKVFQGNRPTNS 483
+ N+LA GK+ E + T +L H G P
Sbjct: 339 EKDSDDLDGLNYLA-------GKTIDEVNTKAFEGT---------LLAHT--DGGVPNMV 380
Query: 484 IVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAI 532
+ + ++ T G ++ +E + G +N ++Q GVE KQ A+
Sbjct: 381 VNIPQLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYKQNMFAL 429
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 5e-06
Identities = 88/553 (15%), Positives = 159/553 (28%), Gaps = 210/553 (37%)
Query: 44 EKFSLTIPTPGDEGNILIDFSKNRIDDQGMNLLFEL-AK-----ARKIEEAREKMFNGER 97
E+F+ +P P + F+ DD+ EL K + +E ++ F
Sbjct: 35 EQFNKILPEPTEG------FAA---DDEPTTPA-ELVGKFLGYVSSLVEPSKVGQF---- 80
Query: 98 INFTEDRAVLHVALRNLSNRPILVDCQDVTPAVNAVKQHMKEFSEQVISQK--WL-GY-- 152
VL++ L L D ++A+ + + ++ + + + Y
Sbjct: 81 ------DQVLNLCLTEF-ENCYLEG-ND----IHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 153 ----TGKPITDVVNIGIGGSDLGPLMVTEALKPYAV----GPRVHFVSNIDGTHLAEVLK 204
+P N S L + + A+ G N D + E L+
Sbjct: 129 ARIMAKRPFDKKSN-----SALFRAVGEGNAQLVAIFGGQG-------NTD-DYFEE-LR 174
Query: 205 KVNPETVLFIVASKTFTT--QETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKVAE 262
L+ +T+ + I + + + K F
Sbjct: 175 D------LY----QTYHVLVGDLIKFSAET---LSELIRTTLDAEKVF-----------T 210
Query: 263 FGIDTANMFGFWDWVGGR-------YSLWSAIGLSIALNIGYNNFERLLAGAHFMDNHFQ 315
G++ +W+ Y L I S L IG ++ AH++
Sbjct: 211 QGLN------ILEWLENPSNTPDKDYLLSIPI--SCPL-IG------VIQLAHYV----- 250
Query: 316 NTPINKNAPVILALLGVWYGNFF----GSETH--ALLPYDQYLHRFAAYFQQGD-MESNG 368
V LLG G G+ H L+ A + D ES
Sbjct: 251 ---------VTAKLLGFTPGELRSYLKGATGHSQGLVT--------AVAIAETDSWES-- 291
Query: 369 KYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNPIENNLH 428
+ + + G A+ P + P+I ++ +ENN
Sbjct: 292 -FFVSVRKAITVLF----F--IGVRCYEAY-----------PNTSLPPSILEDSLENN-- 331
Query: 429 HKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKI-------LPH--KVFQG-- 477
E + SP L + + E V+ LP +V
Sbjct: 332 ------------EGVP---SPM-----LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 478 NRPTNSIVVKKIT--PFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPE 535
N N +VV + P +L L K + DQ + ++ + +
Sbjct: 372 NGAKN-LVV---SGPPQSLYGLNLTL-RKAKAP------SGLDQSRIPFSER-----KLK 415
Query: 536 LQDK-NPVTS--H 545
++ PV S H
Sbjct: 416 FSNRFLPVASPFH 428
Score = 37.3 bits (86), Expect = 0.016
Identities = 48/293 (16%), Positives = 90/293 (30%), Gaps = 96/293 (32%)
Query: 21 EYYQNTGSKINFYELFKK-DPARFEKFSLTIPTPGDEGNILIDFSKNRIDDQGMNLLFEL 79
+ Y+ SK +++ + D + + +I +D N + + + F
Sbjct: 1634 DLYKT--SKA-AQDVWNRADNHFKDTYGFSI----------LDIVIN--NPVNLTIHFGG 1678
Query: 80 AKARKIEEAREKM-FNGERINFTEDRAVLHVALRNLSN------RPILVDCQDVT----P 128
K ++I E M F + + + ++ + +L T P
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL----SATQFTQP 1734
Query: 129 AV----NAVKQHMKEFSEQVISQKW------LG-YT------GK-PITDVVNI----GI- 165
A+ A + +K + +I LG Y I +V + G+
Sbjct: 1735 ALTLMEKAAFEDLKS--KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMT 1792
Query: 166 ----------GGSDLGPLMVTEALKPYAVGP-RVHFVSNIDGTHLAEVLKKVNPETVLF- 213
G S+ G M+ A+ P RV ++ L V+++V T
Sbjct: 1793 MQVAVPRDELGRSNYG--MI-------AINPGRV--AASFSQEALQYVVERVGKRTGWLV 1841
Query: 214 -----------IVASKTFTTQETITNATSA------KNWFLQHSKDPASVAKH 249
VA+ +T+TN + LQ S V H
Sbjct: 1842 EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 9e-05
Identities = 70/520 (13%), Positives = 130/520 (25%), Gaps = 197/520 (37%)
Query: 61 IDFSKNRIDDQGMNLLFELAKA-------RKIEEAREKMFNGERINFTEDRAVLHVALRN 113
+DF Q ++L A + +++ + + + E I+ + ++
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-------IMSKD 59
Query: 114 LSNRP-ILVDCQDVTPAVNAVKQHMKEFSEQVISQ--KWL--GYTGKPITDVVNIGIGGS 168
+ L V++ F E+V+ K+L + + +
Sbjct: 60 AVSGTLRLFWTLLSKQE-EMVQK----FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 169 DLGPLM-VTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETIT 227
L + Y V R+ L + L ++ P + I
Sbjct: 115 QRDRLYNDNQVFAKYNV-SRLQPYLK-----LRQALLELRPAKNVLI------------- 155
Query: 228 NATSAKNWFLQHSKDPASVAKHFVALSTNAGKVAEFGIDTANMFG-FWDWVGGRYSLWSA 286
K +VAL + + F FW
Sbjct: 156 -----------DGV--LGSGKTWVALDV----CLSYKVQCKMDFKIFW------------ 186
Query: 287 IGLSIALNIGYNN-----FERLLAGAHFMD-NHFQNTPINKNAPVILALLGVWYGNFFGS 340
LN+ N E L + +D N + + N + + + S
Sbjct: 187 ------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 341 ETH--ALLPYDQYLHRFAAYFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQH-- 396
+ + LL + V N +
Sbjct: 241 KPYENCLLVLL-------------N----------------------VQ-----NAKAWN 260
Query: 397 AFYQLIHQGTKLIPADFIAPAISQNPIENNLHHKILL-------SNFLAQT-------EA 442
AF NL KILL ++FL+ +
Sbjct: 261 AF---------------------------NLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 443 LAKGKSPAEAEAEL-KATGMPAETVKKILPHKVFQGNRPTNSIVVKKITPFTLGALIAMY 501
+ +P E ++ L K + LP +V P L ++IA
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQD----LPREV------------LTTNPRRL-SIIAES 336
Query: 502 EHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQDKNP 541
+ ++D W +L IE L P
Sbjct: 337 IRD--------GLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Score = 41.0 bits (95), Expect = 0.001
Identities = 43/345 (12%), Positives = 98/345 (28%), Gaps = 83/345 (24%)
Query: 38 KDPARFEKFSL---TIPTPGDEGNILIDFSKNRIDDQGMNLLFELAKARKIEEAREKMFN 94
++ + F+L + T + + DF L+ A + +
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQ--VTDF---------------LSAATTTHISLDHHSM 296
Query: 95 GERINFTEDRA------VLHVALRNLSNRPILVDCQDVTP-AVNAVKQHMKEFSEQVISQ 147
T D L ++L P V P ++ + + +++
Sbjct: 297 T----LTPDEVKSLLLKYLDCRPQDL---PREV-LT-TNPRRLSIIAESIRDGLAT--WD 345
Query: 148 KWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVN 207
W +T ++ + L+P R F L+ +
Sbjct: 346 NWKHVNCDKLTTIIESSL-----------NVLEPAEY--RKMFDR------LSVFPPSAH 386
Query: 208 -PETVLFIV-ASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKVAEFG- 264
P +L ++ + + N + + K+ +++ + L K+
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-TISIPSIYLELKV-KLENEYA 444
Query: 265 -----IDTANMFGFWDWVGG------RYSLWSAIG--LSIALNIG-YNNFERLLAGAHFM 310
+D N+ +D +Y IG L + F + F+
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-IGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 311 DNHFQNTPINKNAPV-ILALLGV--WYGNFFGSETHALLPYDQYL 352
+ ++ NA IL L +Y + + Y++ +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYI-CDNDPK--YERLV 545
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 1.0
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 22/93 (23%)
Query: 7 PSPLLEEPVCKKL--EEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDFS 64
L +EP + EE Q L + D A + L +++
Sbjct: 77 ADRLTQEPESIRKWREE--QRK-------RLQELDAASKVMEQEWREKAKKD---LEEWN 124
Query: 65 KNRIDDQGMNLLFELAKARKIEEAREKMFNGER 97
+ + +Q + K + +K F +
Sbjct: 125 QRQ-SEQ-------VEKNKINNRIADKAFYQQP 149
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor,
universal joint, bacterial flagellum, motor protein;
7.10A {Salmonella enterica subsp}
Length = 402
Score = 29.5 bits (66), Expect = 2.8
Identities = 35/250 (14%), Positives = 65/250 (26%), Gaps = 22/250 (8%)
Query: 153 TGKPITDVVNIGIGGSDLGPLMVTEALKPYAVGPRVHFVSNIDGTHLAEVLKKVNPETVL 212
TG P T G++ P+ + L N++ T +
Sbjct: 116 TGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQINLNSTDPVPSKTPFSVSDAD 175
Query: 213 FIVASKTFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKVAEFGIDTANMFG 272
T T ++ NA +F++ + +V H + N G
Sbjct: 176 SYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATAPTTASTTLKFNENG 235
Query: 273 FWDWVGGRYSLWSAIGLSIALNIGYNNFERLLAGAHFMDNHFQNTPINKNAPVILALL-- 330
+ G I + A + N+N L+
Sbjct: 236 ILESGGTVNITTGTINGATAATFSLSFLN----SMQQNTGANNIVATNQNGYKPGDLVSY 291
Query: 331 -----GVWYGNFFGSETHALLPYDQYLHRFAAYFQQG-DMESNGKYVTRQGTVVNYSTGP 384
G GN+ + L L FA +G + + + ++G
Sbjct: 292 QINNDGTVVGNYSNEQEQVL--GQIVLANFAN--NEGLASQGDNVWA------ATQASGV 341
Query: 385 IVWGEPGTNG 394
+ G G+
Sbjct: 342 ALLGTAGSGN 351
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.8
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 18/41 (43%)
Query: 12 EEPVCKKLEEYYQNTGSKINFYELFKKD--PARFEKFSLTI 50
E+ KKL+ + + Y D PA L I
Sbjct: 18 EKQALKKLQ-------ASLKLYA---DDSAPA------LAI 42
Score = 28.0 bits (61), Expect = 5.7
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 526 KQLAKAIEPELQ----DKNPVTSHDAS 548
KQ K ++ L+ D P + A+
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKAT 45
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal
helical bundle, oxidoreductase; 1.12A {Archaeoglobus
fulgidus} PDB: 2a5w_A
Length = 115
Score = 27.8 bits (62), Expect = 3.5
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 14 PVCKKLEEYYQNTGSKINFYELFKKDPAR 42
+ K ++ + + Y+LF + PA+
Sbjct: 72 MLVKHCKKEVRPDCNLQYIYKLFPQGPAK 100
>3lnb_A N-acetyltransferase family protein; arylamine N-acetyltransferase,
NAT, acetyltrans acyltransferase; HET: COA; 2.01A
{Bacillus anthracis}
Length = 309
Score = 28.5 bits (63), Expect = 5.1
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 10/112 (8%)
Query: 160 VVNIGIGG-SDLGPLMVTEALKPYAVGP-RVHFVSNIDGTHLAEVLKKVNPETVLFIVAS 217
V++ G L P+ + + G R+ + GTH+ E+ K N E+ F+ +
Sbjct: 151 VIDAGFASHLPLHPVPFSGEVISSQTGEYRIRKRTTQKGTHILEMRKGANGESTNFLQSE 210
Query: 218 K--------TFTTQETITNATSAKNWFLQHSKDPASVAKHFVALSTNAGKVA 261
FT + + K+ TN G ++
Sbjct: 211 PSDEWKIGYAFTLDPIDEQKVNNIQKVIVEHKESPFNKGAITCKLTNYGHIS 262
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 28.3 bits (64), Expect = 5.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 12 EEPVCKKLEEYYQNTGSKINFYE 34
EE V +LE YYQN S ++ YE
Sbjct: 163 EEKVKLRLETYYQNIESLLSTYE 185
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional
3-deoxy-7-phosphoheptulonate synthase/chorismat listeria
monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB:
3tfc_A*
Length = 385
Score = 28.2 bits (63), Expect = 8.2
Identities = 16/120 (13%), Positives = 39/120 (32%), Gaps = 16/120 (13%)
Query: 65 KNRIDDQGMNLLFELAK----ARKIEEAREKM----FNGERINFTEDRAVLHVALRNLSN 116
+ ++D ++LL ++K ++I + + F+ R + +L +
Sbjct: 34 RTQVDQLNIDLLELISKRANLVQEIGKIKGTQGSLRFDPLREREMLNT-ILAANEGPFED 92
Query: 117 RPILVDCQDVTPAVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDL----GP 172
+ + A + +E + + I V + IG + GP
Sbjct: 93 STVQ---KLFKEIFKAGLELQEEDHSKALLVSRKNKKEDTIVTVKGLPIGNGEPVFVFGP 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,750,873
Number of extensions: 546771
Number of successful extensions: 1388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1304
Number of HSP's successfully gapped: 31
Length of query: 560
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 462
Effective length of database: 3,965,535
Effective search space: 1832077170
Effective search space used: 1832077170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)