RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4522
(560 letters)
>d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 556
Score = 572 bits (1475), Expect = 0.0
Identities = 383/552 (69%), Positives = 455/552 (82%), Gaps = 3/552 (0%)
Query: 8 SPLLEEPVCKKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDFSKNR 67
+ L +P +KL+++Y+ S++N LF + RF FSLT+ T + G+IL+D+SKN
Sbjct: 1 AALTRDPQFQKLQQWYREHRSELNLRRLFDANKDRFNHFSLTLNT--NHGHILVDYSKNL 58
Query: 68 IDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRNLSNRPILVDCQDVT 127
+ + M +L +LAK+R +E ARE+MFNGE+IN+TE RAVLHVALRN SN PILVD +DV
Sbjct: 59 VTEDVMRMLVDLAKSRGVEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILVDGKDVM 118
Query: 128 PAVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYAVG-P 186
P VN V MK F ++V S W GYTGK ITDV+NIGIGGSDLGPLMVTEALKPY+ G P
Sbjct: 119 PEVNKVLDKMKSFCQRVRSGDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYSSGGP 178
Query: 187 RVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKDPASV 246
RV +VSNIDGTH+A+ L ++NPE+ LFI+ASKTFTTQETITNA +AK WFLQ +KDP++V
Sbjct: 179 RVWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSAV 238
Query: 247 AKHFVALSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNIGYNNFERLLAG 306
AKHFVALSTN KV EFGID NMF FWDWVGGRYSLWSAIGLSIAL++G++NFE+LL+G
Sbjct: 239 AKHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSG 298
Query: 307 AHFMDNHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDMES 366
AH+MD HF+ TP+ KNAPV+LALLG+WY N FG ETHA+LPYDQYLHRFAAYFQQGDMES
Sbjct: 299 AHWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMES 358
Query: 367 NGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPAISQNPIENN 426
NGKY+T+ GT V++ TGPIVWGEPGTNGQHAFYQLIHQGTK+IP DF+ P +Q+PI
Sbjct: 359 NGKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKG 418
Query: 427 LHHKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQGNRPTNSIVV 486
LHHKILL+NFLAQTEAL +GKS EA EL+A G E ++++LPHKVF+GNRPTNSIV
Sbjct: 419 LHHKILLANFLAQTEALMRGKSTEEARKELQAAGKSPEDLERLLPHKVFEGNRPTNSIVF 478
Query: 487 KKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQDKNPVTSHD 546
K+TPF LGAL+AMYEHKIFVQGIIWDINS+DQWGVELGKQLAK IEPEL VTSHD
Sbjct: 479 TKLTPFMLGALVAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDGSAQVTSHD 538
Query: 547 ASTNGLINFLKS 558
ASTNGLINF+K
Sbjct: 539 ASTNGLINFIKQ 550
>d1q50a_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Leishmania
mexicana [TaxId: 5665]}
Length = 561
Score = 563 bits (1452), Expect = 0.0
Identities = 324/562 (57%), Positives = 409/562 (72%), Gaps = 9/562 (1%)
Query: 4 GEVPSPLLEEPVCKKLEEYYQNTGSKINFYELFKKDPARFEKFSLTIPTPGDEGNILIDF 63
G S LL P K+L+ Y+ G+ + F+KD RF+++S+ I D+ + +D+
Sbjct: 1 GVTDSSLLNLPAWKRLQSLYEKYGND-SILSHFEKDHQRFQRYSIEIDLHSDDNFLFLDY 59
Query: 64 SKNRIDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRNLSNRPILVDC 123
SK+ I+D+ + L LA+ R + + MF+G+R+N TE+RAVLHVALRN SNRPI+VD
Sbjct: 60 SKSHINDEIKDALVALAEERGVRAFAKAMFDGQRVNSTENRAVLHVALRNRSNRPIIVDG 119
Query: 124 QDVTPAVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVTEALKPYA 183
+DV VN V MK+F+E+V S +W G TGK I ++VNIGIGGSDLGP+MVTEALKP++
Sbjct: 120 KDVMSDVNNVLAQMKDFTERVRSGEWKGQTGKSIYNIVNIGIGGSDLGPVMVTEALKPFS 179
Query: 184 VGP-RVHFVSNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNATSAKNWFLQHSKD 242
FVSN+DGTH+AEVLK+VN E +FI+ASKTFTTQET+TNA SA+N + + K+
Sbjct: 180 KRDLHCFFVSNVDGTHMAEVLKQVNLEETIFIIASKTFTTQETLTNAMSARNALMSYLKE 239
Query: 243 -----PASVAKHFVALSTNAGKVAEFGIDTANMFGFWDWVGGRYSLWSAIGLSIALNIGY 297
+VAKHFVALSTN KV EFGIDT NMF FWDWVGGRYS+WSAIGLS+ L+IGY
Sbjct: 240 NGISTDGAVAKHFVALSTNTEKVREFGIDTVNMFAFWDWVGGRYSVWSAIGLSVMLSIGY 299
Query: 298 NNFERLLAGAHFMDNHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYDQYLHRFAA 357
+NF L GAH MDNHF +TP +N P++LAL+G+WY NFFGSET A+LPYDQYL R A
Sbjct: 300 DNFVEFLTGAHVMDNHFASTPTEQNLPMMLALVGIWYNNFFGSETQAVLPYDQYLWRLPA 359
Query: 358 YFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLIPADFIAPA 417
Y QQ DMESNGK VT++ V TGPIV+GE GTNGQHAFYQLIHQGTK+IP DFI
Sbjct: 360 YLQQLDMESNGKGVTKKSGAVAVQTGPIVFGEAGTNGQHAFYQLIHQGTKIIPCDFIGCV 419
Query: 418 ISQNPIENNLHHKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKILPHKVFQG 477
+QN + + HH+ L+SNF AQTEAL GK+ E EL +GM + ++ ++PHK F G
Sbjct: 420 QTQNRVGD--HHRTLMSNFFAQTEALMVGKNAEEVRQELVKSGMSGDAIENMIPHKTFTG 477
Query: 478 NRPTNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQ 537
+RP+NSI+V +TP LGA+IAMYEHK+ VQG IW INSYDQWGVELGK LAK+I P+L+
Sbjct: 478 SRPSNSILVNALTPRALGAIIAMYEHKVLVQGAIWGINSYDQWGVELGKVLAKSILPQLK 537
Query: 538 DKNPVTSHDASTNGLINFLKSY 559
N V+ HD STNGLIN +
Sbjct: 538 SGNIVSDHDGSTNGLINMFNTR 559
>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 442
Score = 249 bits (636), Expect = 2e-77
Identities = 89/507 (17%), Positives = 172/507 (33%), Gaps = 75/507 (14%)
Query: 59 ILIDFSKNR--IDDQGMNLLFELAKARKIEEAREKMFNGERINFTEDRAVLHVALRNLSN 116
I D+S + + ++ L E KA A + + ++ +
Sbjct: 2 ISFDYSNALPFMQENELDYLSEFVKA-----AHHMLHER-KGPGSDFLGWVDW------- 48
Query: 117 RPILVDCQDVTPAVNAVKQHMKEFSEQVISQKWLGYTGKPITDVVNIGIGGSDLGPLMVT 176
PI D + +K+ +E++ + +V IGIGGS LG
Sbjct: 49 -PIRYDKNEF--------SRIKQAAERIRNH---------SDALVVIGIGGSYLGARAAI 90
Query: 177 EALKPYAV-----GPRVHFV-SNIDGTHLAEVLKKVNPETVLFIVASKTFTTQETITNAT 230
EAL +++F NI T+++ +L + + + V SK+ TT E
Sbjct: 91 EALSHTFHNQMNDTTQIYFAGQNISSTYISHLLDVLEGKDLSINVISKSGTTTEPAIAFR 150
Query: 231 SAKNWFLQHSKDPASVAKHFVALSTNAGKVAEFGI-DTANMFGFWDWVGGRYSLWSAIGL 289
+++ + + + +V G + + + F D +GGRYS+ +A+GL
Sbjct: 151 IFRDYMEKKYGKEEARKRIYVTTDRTKGALKKLADQEGYETFVIPDNIGGRYSVLTAVGL 210
Query: 290 SIALNIGYNNFERLLAGAHFMDNHFQNTPINKNAPVILALLGVWYGNFFGSETHALLPYD 349
G N + GA + + N + N A + G L+ Y+
Sbjct: 211 LPIAVAGLNIDRMM-EGAASAYHKYNNPDLLTNESYQYAAV-RNILYRKGKAIELLVNYE 268
Query: 350 QYLHRFAAYFQQGDMESNGKYVTRQGTVVNYSTGPIVWGEPGTNGQHAFYQLIHQGTKLI 409
LH + +++Q ES GK T H+ Q + +G + +
Sbjct: 269 PSLHYVSEWWKQLFGESEGKDQKG----------LFPASVDFTTDLHSMGQYVQEGRRNL 318
Query: 410 PADFIAPAISQNPIENNLHHKILLSNFLAQTEALAKGKSPAEAEAELKATGMPAETVKKI 469
+ Q + + + GK+ E + +
Sbjct: 319 IETVLHVKKPQIELTIQEDPENIDGL------NFLAGKTLDEVNKKAF----------QG 362
Query: 470 LPHKVFQGNRPTNSIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLA 529
G P + + ++ +T G ++ +E + G + +N +DQ GVE K+
Sbjct: 363 TLLAHVDGGVPNLIVELDEMNEYTFGEMVYFFEKACGISGHLLGVNPFDQPGVEAYKKNM 422
Query: 530 KAIEPELQDKNPVTSHDASTNGLINFL 556
A+ + + L+ L
Sbjct: 423 FALLGK-------PGFEDEKAALMKRL 442
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 202
Score = 29.0 bits (65), Expect = 1.1
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 155 KPITDVVNIGIGGSDLG---PLMVTEALKPYAVGPRVHFVSNIDGTH 198
+ I VV +G GS L P ++TEAL Y V V NI GT
Sbjct: 144 RDIAFVVLVG--GSSLDFEIPQLITEALSHYGV---VAGQGNIRGTE 185
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor
large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Length = 203
Score = 28.2 bits (63), Expect = 1.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 155 KPITDVVNIGIGGSDLG---PLMVTEALKPYAVGPRVHFVSNIDGTH 198
+ I VV +G GS L P +VT+AL Y + V NI G+
Sbjct: 144 RDIPFVVLVG--GSSLDFEVPQLVTDALAHYRL---VAGRGNIRGSE 185
>d1i5pa3 f.1.3.1 (A:1-263) delta-Endotoxin (insectocide), N-terminal
domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA
[TaxId: 29339]}
Length = 263
Score = 27.9 bits (62), Expect = 2.8
Identities = 11/77 (14%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 483 SIVVKKITPFTLGALIAMYEHKIFVQGIIWDINSYDQWGVELGKQLAKAIEPELQDKNPV 542
S ++KK+ +++ + GII+ S + ++ ++ + + L +
Sbjct: 59 SFLLKKVGSLIGKRILS------ELWGIIFPSGSTNLMQ-DILRETEQFLNQRLNTDT-L 110
Query: 543 TSHDASTNGLINFLKSY 559
+A GL ++ +
Sbjct: 111 ARVNAELIGLQANIREF 127
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
dehydrogenase, PP module {Thermus thermophilus [TaxId:
274]}
Length = 362
Score = 27.6 bits (60), Expect = 4.8
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 33 YELFKKDPARFEKFSLTIPTPGDEGNILIDFSKNRIDDQGMNLLFELAKARKIEEAREKM 92
+E F ++P R G+EG L DF + ++ L ++ AR ++E +
Sbjct: 3 FETFTEEPIRL---------IGEEGEWLGDFPLDLEGEKLRRLYRDMLAARMLDERYTIL 53
Query: 93 FNGERINFT 101
+ +F
Sbjct: 54 IRTGKTSFI 62
>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase,
N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Length = 234
Score = 26.9 bits (58), Expect = 5.5
Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 13/116 (11%)
Query: 269 NMFGFWDWVGGRYSLWSAIGLSIALNIGYNNFERLLAGAHFMDNHFQNTPINKNAPVILA 328
+ G ++L I S+++ G F M ++ N L+
Sbjct: 129 EVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFL-------IMTETEMIVALDPNGLRPLS 181
Query: 329 LLGVWYGNFFGSETHALLPYDQYLHRFAAYFQQGDM---ESNGKYVTRQGTVVNYS 381
+ + SET A + + G+M G R +N S
Sbjct: 182 IGMMGDAYVVASETCAFDVVGA---TYLREVEPGEMLIINDEGMKSERFSMNINRS 234
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,115,967
Number of extensions: 101281
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 15
Length of query: 560
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 470
Effective length of database: 1,171,896
Effective search space: 550791120
Effective search space used: 550791120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)