BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4523
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K1F|A Chain A, Sumo-3 From Drosophila Melanogaster (Dsmt3)
Length = 88
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 70/89 (78%), Gaps = 11/89 (12%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
EHINLKVLGQDN VVQFKIKK TPLRKLMNAYC+R LSM VRFRFDG
Sbjct: 11 EHINLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRA-----------GLSMQVVRFRFDG 59
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
Q INE DTP++LEMEEGDTIE+YQQQTGG
Sbjct: 60 QPINENDTPTSLEMEEGDTIEVYQQQTGG 88
>pdb|2IO1|B Chain B, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|D Chain D, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|F Chain F, Crystal Structure Of Human Senp2 In Complex With Presumo-3
Length = 94
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 69/94 (73%), Gaps = 11/94 (11%)
Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
++HINLKV GQD +VVQFKIK+ TPL KLM AYCER Q LSM +RFRFD
Sbjct: 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 53
Query: 72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQT 105
GQ INE DTP+ LEME+ DTI+++QQQTGG ++
Sbjct: 54 GQPINETDTPAQLEMEDEDTIDVFQQQTGGVPES 87
>pdb|2AWT|A Chain A, Solution Structure Of Human Small Ubiquitin-Like Modifier
Protein Isoform 2 (Sumo-2)
Length = 95
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 67/90 (74%), Gaps = 11/90 (12%)
Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
++HINLKV GQD +VVQFKIK+ TPL KLM AYCER Q LSM +RFRFD
Sbjct: 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 63
Query: 72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 64 GQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>pdb|2IO3|B Chain B, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 81
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 67/90 (74%), Gaps = 11/90 (12%)
Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
++HINLKV GQD +VVQFKIK+ TPL KLM AYCER Q LSM +RFRFD
Sbjct: 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 51
Query: 72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 52 GQPINETDTPAQLEMEDEDTIDVFQQQTGG 81
>pdb|2IO0|B Chain B, Crystal Structure Of Human Senp2 In Complex With Presumo-2
Length = 91
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 67/90 (74%), Gaps = 11/90 (12%)
Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
++HINLKV GQD +VVQFKIK+ TPL KLM AYCER Q LSM +RFRFD
Sbjct: 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 51
Query: 72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 52 GQPINETDTPAQLEMEDEDTIDVFQQQTGG 81
>pdb|2D07|B Chain B, Crystal Structure Of Sumo-3-Modified Thymine-Dna
Glycosylase
pdb|2RPQ|A Chain A, Solution Structure Of A Sumo-Interacting Motif Of Mbd1-
Containing Chromatin-Associated Factor 1 Bound To Sumo-3
Length = 93
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 67/90 (74%), Gaps = 11/90 (12%)
Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
++HINLKV GQD +VVQFKIK+ TPL KLM AYCER Q LSM +RFRFD
Sbjct: 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 63
Query: 72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 64 GQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>pdb|2CKH|B Chain B, Senp1-sumo2 Complex
Length = 79
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 67/90 (74%), Gaps = 11/90 (12%)
Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
++HINLKV GQD +VVQFKIK+ TPL KLM AYCER Q LSM +RFRFD
Sbjct: 1 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 49
Query: 72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 50 GQPINETDTPAQLEMEDEDTIDVFQQQTGG 79
>pdb|2IYD|B Chain B, Senp1 Covalent Complex With Sumo-2
Length = 81
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 67/90 (74%), Gaps = 11/90 (12%)
Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
++HINLKV GQD +VVQFKIK+ TPL KLM AYCER Q LSM +RFRFD
Sbjct: 1 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 49
Query: 72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 50 GQPINETDTPAQLEMEDEDTIDVFQQQTGG 79
>pdb|3UIN|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
pdb|3UIO|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 67/90 (74%), Gaps = 11/90 (12%)
Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
++HINLKV GQD +VVQFKIK+ TPL KLM AYCER Q LSM +RFRFD
Sbjct: 2 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 50
Query: 72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 51 GQPINETDTPAQLEMEDEDTIDVFQQQTGG 80
>pdb|1WZ0|A Chain A, Solution Structure Of Human Sumo-2 (Smt3b), A Ubiquitin-
Like Protein
Length = 104
Score = 115 bits (287), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 66/90 (73%), Gaps = 11/90 (12%)
Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
++HINLKV GQD +VVQFKIK+ TPL KLM AYCER Q LSM +RFRFD
Sbjct: 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 70
Query: 72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
GQ INE DTP+ LEME+ DTI+++QQQT G
Sbjct: 71 GQPINETDTPAQLEMEDEDTIDVFQQQTSG 100
>pdb|1U4A|A Chain A, Solution Structure Of Human Sumo-3 C47s
Length = 87
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 67/92 (72%), Gaps = 11/92 (11%)
Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
++HINLKV GQD +VVQFKIK+ TPL KLM AY ER Q LSM +RFRFD
Sbjct: 1 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYSER-----------QGLSMRQIRFRFD 49
Query: 72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGGFK 103
GQ INE DTP+ LEME+ DTI+++QQQTGG +
Sbjct: 50 GQPINETDTPAQLEMEDEDTIDVFQQQTGGLE 81
>pdb|1WM2|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 78
Score = 108 bits (270), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 63/86 (73%), Gaps = 11/86 (12%)
Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
++HINLKV GQD +VVQFKIK+ TPL KLM AYCER Q LSM +RFRFD
Sbjct: 4 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFD 52
Query: 72 GQAINEQDTPSTLEMEEGDTIEIYQQ 97
GQ INE DTP+ LEME+ DTI+++QQ
Sbjct: 53 GQPINETDTPAQLEMEDEDTIDVFQQ 78
>pdb|1WM3|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 72
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 60/83 (72%), Gaps = 11/83 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV GQD +VVQFKIK+ TPL KLM AYCER Q LSM +RFRFDGQ
Sbjct: 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFDGQ 49
Query: 74 AINEQDTPSTLEMEEGDTIEIYQ 96
INE DTP+ LEME+ DTI+++Q
Sbjct: 50 PINETDTPAQLEMEDEDTIDVFQ 72
>pdb|2IY0|B Chain B, Senp1 (Mutant) Sumo1 Rangap
Length = 82
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
E+I LKV+GQD++ + FK+K T L+KL +YC+R Q + M+++RF F+G
Sbjct: 1 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 49
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
Q I + TP L MEE D IE+YQ+QTGG
Sbjct: 50 QRIADNHTPKELGMEEEDVIEVYQEQTGG 78
>pdb|2IY1|B Chain B, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|D Chain D, Senp1 (Mutant) Full Length Sumo1
Length = 83
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
E+I LKV+GQD++ + FK+K T L+KL +YC+R Q + M+++RF F+G
Sbjct: 1 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 49
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
Q I + TP L MEE D IE+YQ+QTGG
Sbjct: 50 QRIADNHTPKELGMEEEDVIEVYQEQTGG 78
>pdb|2UYZ|B Chain B, Non-Covalent Complex Between Ubc9 And Sumo1
pdb|2VRR|B Chain B, Structure Of Sumo Modified Ubc9
Length = 79
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
E+I LKV+GQD++ + FK+K T L+KL +YC+R Q + M+++RF F+G
Sbjct: 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 50
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
Q I + TP L MEE D IE+YQ+QTGG
Sbjct: 51 QRIADNHTPKELGMEEEDVIEVYQEQTGG 79
>pdb|2G4D|B Chain B, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|D Chain D, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2LAS|A Chain A, Molecular Determinants Of Paralogue-Specific Sumo-Sim
Recognition
Length = 78
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
E+I LKV+GQD++ + FK+K T L+KL +YC+R Q + M+++RF F+G
Sbjct: 1 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 49
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
Q I + TP L MEE D IE+YQ+QTGG
Sbjct: 50 QRIADNHTPKELGMEEEDVIEVYQEQTGG 78
>pdb|1A5R|A Chain A, Structure Determination Of The Small Ubiquitin-Related
Modifier Sumo-1, Nmr, 10 Structures
Length = 103
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
E+I LKV+GQD++ + FK+K T L+KL +YC+R Q + M+++RF F+G
Sbjct: 22 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 70
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
Q I + TP L MEE D IE+YQ+QTGG
Sbjct: 71 QRIADNHTPKELGMEEEDVIEVYQEQTGG 99
>pdb|1TGZ|B Chain B, Structure Of Human Senp2 In Complex With Sumo-1
pdb|3UIP|B Chain B, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
E+I LKV+GQD++ + FK+K T L+KL +YC+R Q + M+++RF F+G
Sbjct: 3 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 51
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
Q I + TP L MEE D IE+YQ+QTGG
Sbjct: 52 QRIADNHTPKELGMEEEDVIEVYQEQTGG 80
>pdb|1Y8R|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|F Chain F, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1WYW|B Chain B, Crystal Structure Of Sumo1-Conjugated Thymine Dna
Glycosylase
pdb|2PE6|B Chain B, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
pdb|2ASQ|A Chain A, Solution Structure Of Sumo-1 In Complex With A
Sumo-Binding Motif (Sbm)
Length = 97
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
E+I LKV+GQD++ + FK+K T L+KL +YC+R Q + M+++RF F+G
Sbjct: 20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 68
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
Q I + TP L MEE D IE+YQ+QTGG
Sbjct: 69 QRIADNHTPKELGMEEEDVIEVYQEQTGG 97
>pdb|2KQS|A Chain A, Phosphorylation Of Sumo-Interacting Motif By Ck2 Enhances
Daxx Sumo Binding Activity
Length = 99
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
E+I LKV+GQD++ + FK+K T L+KL +YC+R Q + M+++RF F+G
Sbjct: 22 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 70
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
Q I + TP L MEE D IE+YQ+QTGG
Sbjct: 71 QRIADNHTPKELGMEEEDVIEVYQEQTGG 99
>pdb|1Z5S|B Chain B, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2IO2|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
Length = 82
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
E+I LKV+GQD++ + FK+K T L+KL +YC+R Q + M+++RF F+G
Sbjct: 5 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 53
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
Q I + TP L MEE D IE+YQ+QTGG
Sbjct: 54 QRIADNHTPKELGMEEEDVIEVYQEQTGG 82
>pdb|2BF8|B Chain B, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 77
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 11/88 (12%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
+I LKV+GQD++ + FK+K T L+KL +YC+R Q + M+++RF F+GQ
Sbjct: 1 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEGQ 49
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
I + TP L MEE D IE+YQ+QTGG
Sbjct: 50 RIADNHTPKELGMEEEDVIEVYQEQTGG 77
>pdb|3KYC|D Chain D, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 97
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 11/89 (12%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
E+I LKV+GQD++ + FK+K T L+KL +YC+R Q + M+++RF F+G
Sbjct: 20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 68
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
Q I + TP L MEE D IE+YQ+Q GG
Sbjct: 69 QRIADNHTPKELGMEEEDVIEVYQEQCGG 97
>pdb|3RZW|C Chain C, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
pdb|3RZW|D Chain D, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
Length = 99
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 11/89 (12%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
E+I LKV+GQD++ + FK+K T L+KL +Y +R Q + M+++RF F+G
Sbjct: 22 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYAQR-----------QGVPMNSLRFLFEG 70
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
Q I + TP L MEE D IE+YQ+QTGG
Sbjct: 71 QRIADNHTPKELGMEEEDVIEVYQEQTGG 99
>pdb|3KYD|D Chain D, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 115
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 11/88 (12%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
E+I LKV+GQD++ + FK+K T L+KL +YC+R Q + M+++RF F+G
Sbjct: 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 87
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTG 100
Q I + TP L MEE D IE+YQ+Q G
Sbjct: 88 QRIADNHTPKELGMEEEDVIEVYQEQCG 115
>pdb|3V7O|A Chain A, Crystal Structure Of The C-Terminal Domain Of Ebola Virus
Vp30 (Strain Reston-89)
pdb|3V7O|B Chain B, Crystal Structure Of The C-Terminal Domain Of Ebola Virus
Vp30 (Strain Reston-89)
Length = 227
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV + + FKIKK TPLR+LM A+ +R Q M ++RF +DG
Sbjct: 21 HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 68
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGGFKQTPQLQI---WHT 113
I TP L+ME+ D IE +++Q GG LQI W T
Sbjct: 69 RIQADQTPEDLDMEDNDIIEAHREQIGGLTLAVLLQIAEHWAT 111
>pdb|3PGE|A Chain A, Structure Of Sumoylated Pcna
Length = 200
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV + + FKIKK TPLR+LM A+ +R Q M ++RF +DG
Sbjct: 29 HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 76
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGGFKQT 105
I TP L+ME+ D IE +++Q GG +T
Sbjct: 77 RIQADQTPEDLDMEDNDIIEAHREQIGGGGET 108
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 12/90 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV ++ + FKIKK TPLR+LM A+ +R Q M ++RF +DG
Sbjct: 21 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 68
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGGFK 103
I TP L+ME+ D IE +++Q GG +
Sbjct: 69 RIQADQTPEDLDMEDNDIIEAHREQIGGMR 98
>pdb|1L2N|A Chain A, Smt3 Solution Structure
Length = 101
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV + + FKIKK TPLR+LM A+ +R Q M ++RF +DG
Sbjct: 23 HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 70
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
I TP L+ME+ D IE +++Q GG
Sbjct: 71 RIQADQTPEDLDMEDNDIIEAHREQIGG 98
>pdb|1EUV|B Chain B, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 86
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV + + FKIKK TPLR+LM A+ +R Q M ++RF +DG
Sbjct: 11 HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 58
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
I TP L+ME+ D IE +++Q GG
Sbjct: 59 RIQADQTPEDLDMEDNDIIEAHREQIGG 86
>pdb|3QHT|A Chain A, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
pdb|3QHT|B Chain B, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
Length = 98
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV + + FKIKK TPLR+LM A+ +R Q M ++RF +DG
Sbjct: 23 HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 70
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
I TP L+ME+ D IE +++Q GG
Sbjct: 71 RIQADQTPEDLDMEDNDIIEAHREQIGG 98
>pdb|3V60|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
pdb|3V61|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
Length = 84
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV + + FKIKK TPLR+LM A+ +R Q M ++RF +DG
Sbjct: 9 HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 56
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
I TP L+ME+ D IE +++Q GG
Sbjct: 57 RIQADQTPEDLDMEDNDIIEAHREQIGG 84
>pdb|3TIX|A Chain A, Crystal Structure Of The Chp1-Tas3 Complex Core
pdb|3TIX|C Chain C, Crystal Structure Of The Chp1-Tas3 Complex Core
Length = 207
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 12/95 (12%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV + + FKIKK TPLR+LM A+ +R Q M ++ F +DG
Sbjct: 57 HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLTFLYDGI 104
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGGFKQTPQL 108
I TP L+ME+ D IE +++Q GG P L
Sbjct: 105 EIQADQTPEDLDMEDNDIIEAHREQIGGLPSLPFL 139
>pdb|2EKE|C Chain C, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|D Chain D, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 106
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV + + FKIKK TPLR+LM A+ +R Q M ++RF +DG
Sbjct: 31 HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 78
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
I TP L+ME+ D IE +++Q GG
Sbjct: 79 RIQADQTPEDLDMEDNDIIEAHREQIGG 106
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV + + FKIKK TPLR+LM A+ +R Q M ++RF +DG
Sbjct: 21 HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 68
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
I TP L+ME+ D IE +++Q GG
Sbjct: 69 RIQADQTPEDLDMEDNDIIEAHREQIGG 96
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV + + FKIKK TPLR+LM A+ +R Q M ++RF +DG
Sbjct: 21 HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 68
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
I TP L+ME+ D IE +++Q GG
Sbjct: 69 RIQADQTPEDLDMEDNDIIEAHREQIGG 96
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV + + FKIKK TPLR+LM A+ +R Q M ++RF +DG
Sbjct: 21 HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 68
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
I TP L+ME+ D IE +++Q GG
Sbjct: 69 RIQADQTPEDLDMEDNDIIEAHREQIGG 96
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV + + FKIKK TPLR+LM A+ +R Q M ++RF +DG
Sbjct: 21 HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 68
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
I TP L+ME+ D IE +++Q GG
Sbjct: 69 RIQADQTPEDLDMEDNDIIEAHREQIGG 96
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 12/88 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV + + FKIKK TPLR+LM A+ +R Q M ++RF +DG
Sbjct: 21 HINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGI 68
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
I TP L+ME+ D IE +++Q GG
Sbjct: 69 RIQADQTPEDLDMEDNDIIEAHREQIGG 96
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 65.5 bits (158), Expect = 8e-12, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
+ HINLKV + + FKIKK TPLR+LM A+ +R Q M ++RF +D
Sbjct: 28 ETHINLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYD 75
Query: 72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
G I P L+ME+ D IE +++Q GG
Sbjct: 76 GIRIQADQAPEDLDMEDNDIIEAHREQIGG 105
>pdb|2K8H|A Chain A, Solution Structure Of Sumo From Trypanosoma Brucei
Length = 110
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 11/89 (12%)
Query: 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQA 74
+ +KV+ D + F+IK T L+KL++ YC++ Q +S ++VRF FDG
Sbjct: 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKK-----------QGISRNSVRFLFDGTP 75
Query: 75 INEQDTPSTLEMEEGDTIEIYQQQTGGFK 103
I+E TP L ME+ D I+ +QTGG +
Sbjct: 76 IDETKTPEELGMEDDDVIDAMVEQTGGLE 104
>pdb|3V62|A Chain A, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
pdb|3V62|D Chain D, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
Length = 84
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINL V + + F I TPLR+LM A+ R Q M ++RF +DG
Sbjct: 9 HINLXVSDGSSEIF-FXIXXTTPLRRLMEAFAXR-----------QGXEMDSLRFLYDGI 56
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
I TP L+ME+ D IE +++Q GG
Sbjct: 57 RIQADQTPEDLDMEDNDIIEAHREQIGG 84
>pdb|3RD2|A Chain A, Nip45 Sumo-Like Domain 2
Length = 82
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 13 EHINLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
+ + L+V G++ + ++ + + +PL+ LM+ Y E LS + F FD
Sbjct: 9 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAM-----------GLSGRKLSFFFD 57
Query: 72 GQAINEQDTPSTLEMEEGDTIEIY 95
G ++ ++ P+ L ME GD IE++
Sbjct: 58 GTKLSGRELPADLGMESGDLIEVW 81
>pdb|2JXX|A Chain A, Nmr Solution Structure Of Ubiquitin-Like Domain Of
Nfatc2ip. Northeast Structural Genomics Consortium
Target Hr5627
Length = 97
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 13 EHINLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
+ + L+V G++ + ++ + + +PL+ LM+ Y E LS + F FD
Sbjct: 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAM-----------GLSGRKLSFFFD 72
Query: 72 GQAINEQDTPSTLEMEEGDTIEIY 95
G ++ ++ P+ L ME GD IE++
Sbjct: 73 GTKLSGRELPADLGMESGDLIEVW 96
>pdb|3A4R|A Chain A, The Crystal Structure Of Sumo-Like Domain 2 In Nip45
pdb|3A4R|B Chain B, The Crystal Structure Of Sumo-Like Domain 2 In Nip45
pdb|3A4S|C Chain C, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|D Chain D, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 79
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 15 INLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
+ L+V G++ + +++ + +PL+ LM+ Y E LS + F FDG
Sbjct: 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAM-----------GLSGHKLSFFFDGT 56
Query: 74 AINEQDTPSTLEMEEGDTIEIY 95
++ ++ P+ L +E GD IE++
Sbjct: 57 KLSGKELPADLGLESGDLIEVW 78
>pdb|1V4L|A Chain A, Crystal Structure Of A Platelet Agglutination Factor
Isolated From The Venom Of Taiwan Habu (Trimeresurus
Mucrosquamatus)
pdb|1V4L|C Chain C, Crystal Structure Of A Platelet Agglutination Factor
Isolated From The Venom Of Taiwan Habu (Trimeresurus
Mucrosquamatus)
pdb|1V4L|E Chain E, Crystal Structure Of A Platelet Agglutination Factor
Isolated From The Venom Of Taiwan Habu (Trimeresurus
Mucrosquamatus)
Length = 135
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCER 47
+N + L + ++ + +KKGT LR N YC R
Sbjct: 91 VNYENLYKQSSKKCYALKKGTELRTWFNVYCGR 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,227,850
Number of Sequences: 62578
Number of extensions: 113154
Number of successful extensions: 368
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 48
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)