Query psy4523
Match_columns 126
No_of_seqs 115 out of 529
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 19:20:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1769|consensus 100.0 4.6E-31 9.9E-36 185.8 11.0 81 12-103 18-98 (99)
2 COG5227 SMT3 Ubiquitin-like pr 99.9 2.8E-27 6E-32 165.1 5.4 83 10-103 20-102 (103)
3 cd01763 Sumo Small ubiquitin-r 99.9 2.4E-25 5.3E-30 152.2 11.0 86 5-101 2-87 (87)
4 PF11976 Rad60-SLD: Ubiquitin- 99.9 1.6E-21 3.5E-26 127.3 7.6 71 15-96 1-72 (72)
5 cd01806 Nedd8 Nebb8-like ubiq 99.5 2.5E-13 5.5E-18 88.5 9.2 76 15-101 1-76 (76)
6 cd01803 Ubiquitin Ubiquitin. U 99.3 3.8E-11 8.2E-16 78.2 8.9 76 15-101 1-76 (76)
7 PTZ00044 ubiquitin; Provisiona 99.3 5.6E-11 1.2E-15 78.0 9.1 76 15-101 1-76 (76)
8 cd01810 ISG15_repeat2 ISG15 ub 99.2 1.3E-10 2.8E-15 76.6 8.4 74 17-101 1-74 (74)
9 cd01809 Scythe_N Ubiquitin-lik 99.2 2.7E-10 5.8E-15 73.4 8.6 71 15-96 1-71 (72)
10 cd01802 AN1_N ubiquitin-like d 99.2 3.5E-10 7.7E-15 79.9 9.7 78 13-101 26-103 (103)
11 cd01793 Fubi Fubi ubiquitin-li 99.2 3.4E-10 7.4E-15 74.6 8.8 73 16-101 2-74 (74)
12 cd01807 GDX_N ubiquitin-like d 99.2 3.4E-10 7.3E-15 74.5 8.6 72 16-98 2-73 (74)
13 cd01804 midnolin_N Ubiquitin-l 99.1 4.3E-10 9.3E-15 75.3 9.1 76 15-102 2-77 (78)
14 PF00240 ubiquitin: Ubiquitin 99.1 3.8E-10 8.3E-15 72.5 8.2 67 21-98 2-68 (69)
15 cd01805 RAD23_N Ubiquitin-like 99.1 1.3E-09 2.7E-14 71.6 8.9 73 15-98 1-75 (77)
16 cd01791 Ubl5 UBL5 ubiquitin-li 99.1 9.9E-10 2.2E-14 73.2 8.5 71 15-96 2-72 (73)
17 cd01812 BAG1_N Ubiquitin-like 99.1 8.5E-10 1.8E-14 71.1 7.3 70 15-96 1-70 (71)
18 cd01798 parkin_N amino-termina 99.0 2.6E-09 5.7E-14 69.4 7.8 68 18-96 2-69 (70)
19 cd01797 NIRF_N amino-terminal 99.0 3.9E-09 8.5E-14 70.9 8.2 73 16-99 2-76 (78)
20 cd01792 ISG15_repeat1 ISG15 ub 98.9 5.8E-09 1.3E-13 69.8 8.0 73 15-98 3-77 (80)
21 cd01800 SF3a120_C Ubiquitin-li 98.9 6.4E-09 1.4E-13 69.0 7.7 70 23-103 6-75 (76)
22 cd01794 DC_UbP_C dendritic cel 98.9 8.2E-09 1.8E-13 68.1 7.6 69 17-96 1-69 (70)
23 cd01808 hPLIC_N Ubiquitin-like 98.9 1.2E-08 2.5E-13 66.6 8.1 71 15-97 1-71 (71)
24 smart00213 UBQ Ubiquitin homol 98.9 1.3E-08 2.8E-13 63.4 7.1 64 15-90 1-64 (64)
25 cd01769 UBL Ubiquitin-like dom 98.8 5.5E-08 1.2E-12 61.2 7.8 67 19-96 2-68 (69)
26 cd01796 DDI1_N DNA damage indu 98.7 1.3E-07 2.8E-12 62.1 7.3 66 19-95 3-70 (71)
27 KOG0005|consensus 98.5 1E-07 2.2E-12 62.5 4.2 68 16-94 2-69 (70)
28 TIGR00601 rad23 UV excision re 98.5 5.8E-07 1.3E-11 76.3 8.6 76 15-101 1-79 (378)
29 cd01799 Hoil1_N Ubiquitin-like 98.4 1.8E-06 3.8E-11 57.8 7.7 62 23-96 11-74 (75)
30 cd01790 Herp_N Homocysteine-re 98.4 1.7E-06 3.6E-11 59.0 7.4 71 14-95 1-77 (79)
31 cd01813 UBP_N UBP ubiquitin pr 98.3 3.9E-06 8.6E-11 55.7 7.6 68 16-95 2-72 (74)
32 KOG0010|consensus 98.2 2.9E-06 6.4E-11 74.0 6.6 74 14-99 15-88 (493)
33 KOG0003|consensus 98.2 4.3E-07 9.4E-12 65.8 0.5 75 18-103 4-78 (128)
34 cd00196 UBQ Ubiquitin-like pro 98.0 4.6E-05 1E-09 44.1 7.4 63 23-96 6-68 (69)
35 cd01815 BMSC_UbP_N Ubiquitin-l 98.0 1.9E-05 4E-10 53.4 5.1 52 34-96 20-74 (75)
36 cd01789 Alp11_N Ubiquitin-like 97.8 0.00016 3.5E-09 49.0 8.1 71 15-96 2-80 (84)
37 cd01814 NTGP5 Ubiquitin-like N 97.8 4.9E-05 1.1E-09 55.1 5.5 82 13-100 3-93 (113)
38 PF11543 UN_NPL4: Nuclear pore 97.7 0.00011 2.4E-09 49.8 5.2 70 13-94 3-77 (80)
39 PF13881 Rad60-SLD_2: Ubiquiti 97.6 0.00082 1.8E-08 48.3 9.6 73 14-91 2-76 (111)
40 PLN02560 enoyl-CoA reductase 97.6 0.00028 6E-09 58.5 7.8 69 16-95 2-81 (308)
41 PF14560 Ubiquitin_2: Ubiquiti 97.6 0.00058 1.3E-08 46.0 7.8 71 15-96 2-82 (87)
42 KOG0011|consensus 97.5 0.00057 1.2E-08 57.5 8.3 74 16-100 2-77 (340)
43 KOG0004|consensus 97.4 0.00026 5.5E-09 53.9 4.2 79 16-105 2-80 (156)
44 cd01801 Tsc13_N Ubiquitin-like 97.3 0.0012 2.7E-08 43.6 6.4 53 32-95 20-75 (77)
45 PF11470 TUG-UBL1: GLUT4 regul 97.1 0.0025 5.5E-08 41.8 6.1 63 20-93 2-64 (65)
46 PF08817 YukD: WXG100 protein 97.1 0.0023 5E-08 42.6 6.0 73 14-94 2-78 (79)
47 PF00789 UBX: UBX domain; Int 97.0 0.017 3.7E-07 38.1 9.5 73 11-94 3-80 (82)
48 KOG0001|consensus 96.9 0.032 6.9E-07 33.9 9.5 70 18-98 3-72 (75)
49 KOG4248|consensus 96.8 0.0029 6.4E-08 59.8 6.1 71 16-98 4-74 (1143)
50 cd01795 USP48_C USP ubiquitin- 96.7 0.0062 1.3E-07 43.7 6.3 62 25-97 15-77 (107)
51 cd00754 MoaD Ubiquitin domain 95.8 0.073 1.6E-06 34.5 7.0 64 26-101 17-80 (80)
52 cd01774 Faf1_like2_UBX Faf1 ik 95.6 0.18 3.9E-06 34.3 8.7 71 13-95 3-83 (85)
53 PRK08364 sulfur carrier protei 95.4 0.25 5.3E-06 32.2 8.5 67 14-101 4-70 (70)
54 TIGR01687 moaD_arch MoaD famil 95.0 0.34 7.4E-06 32.2 8.4 73 25-101 16-88 (88)
55 smart00166 UBX Domain present 94.9 0.42 9.2E-06 31.5 8.6 71 13-94 3-78 (80)
56 KOG0006|consensus 94.8 0.1 2.2E-06 44.5 6.5 60 25-95 14-73 (446)
57 cd01767 UBX UBX (ubiquitin reg 94.6 0.52 1.1E-05 30.8 8.4 67 14-92 2-73 (77)
58 COG5417 Uncharacterized small 94.2 0.59 1.3E-05 32.0 8.0 75 14-94 6-80 (81)
59 PRK06437 hypothetical protein; 94.2 0.54 1.2E-05 30.5 7.6 58 24-101 10-67 (67)
60 cd01770 p47_UBX p47-like ubiqu 93.5 1.1 2.4E-05 30.0 8.4 68 14-92 4-75 (79)
61 PRK07440 hypothetical protein; 93.5 0.99 2.1E-05 29.5 8.0 68 13-101 3-70 (70)
62 KOG3493|consensus 93.4 0.048 1E-06 36.4 1.5 71 15-96 2-72 (73)
63 PLN02799 Molybdopterin synthas 93.2 0.49 1.1E-05 31.1 6.3 62 25-101 19-82 (82)
64 TIGR01682 moaD molybdopterin c 92.8 1 2.2E-05 29.5 7.4 60 26-101 17-80 (80)
65 PRK06488 sulfur carrier protei 92.7 1.1 2.3E-05 28.5 7.1 64 16-101 2-65 (65)
66 PRK05659 sulfur carrier protei 92.3 1.5 3.2E-05 27.6 7.4 65 16-101 2-66 (66)
67 PF02597 ThiS: ThiS family; I 92.1 0.57 1.2E-05 29.9 5.3 65 26-101 13-77 (77)
68 PRK06944 sulfur carrier protei 92.0 1.1 2.4E-05 28.1 6.5 60 23-101 6-65 (65)
69 cd01773 Faf1_like1_UBX Faf1 ik 91.8 2.9 6.2E-05 28.6 8.7 71 13-95 4-79 (82)
70 smart00455 RBD Raf-like Ras-bi 91.6 1.1 2.5E-05 29.3 6.4 44 18-72 3-46 (70)
71 cd01772 SAKS1_UBX SAKS1-like U 90.9 3.3 7.1E-05 27.4 8.7 69 14-94 4-77 (79)
72 cd06409 PB1_MUG70 The MUG70 pr 90.5 1.1 2.5E-05 30.9 5.8 44 16-70 2-48 (86)
73 PF00564 PB1: PB1 domain; Int 90.5 2.1 4.6E-05 27.7 6.9 45 14-70 1-46 (84)
74 PF12436 USP7_ICP0_bdg: ICP0-b 90.4 1.1 2.3E-05 35.9 6.4 79 10-99 64-154 (249)
75 PRK08053 sulfur carrier protei 90.2 3.2 7E-05 26.4 7.4 65 16-101 2-66 (66)
76 cd01811 OASL_repeat1 2'-5' oli 90.0 2.8 6E-05 28.7 7.2 68 15-94 1-73 (80)
77 cd01760 RBD Ubiquitin-like dom 90.0 2.9 6.3E-05 27.7 7.3 64 18-95 3-70 (72)
78 PRK06083 sulfur carrier protei 89.9 3.8 8.3E-05 27.9 8.0 69 12-101 16-84 (84)
79 PRK05863 sulfur carrier protei 89.8 2.5 5.3E-05 27.0 6.7 60 23-101 6-65 (65)
80 PF13019 Telomere_Sde2: Telome 89.4 3.4 7.3E-05 31.8 8.2 78 15-103 1-90 (162)
81 cd06406 PB1_P67 A PB1 domain i 89.3 0.63 1.4E-05 31.9 3.7 76 15-113 3-78 (80)
82 TIGR01683 thiS thiamine biosyn 88.8 3 6.5E-05 26.3 6.4 57 29-101 8-64 (64)
83 cd01771 Faf1_UBX Faf1 UBX doma 88.5 5.6 0.00012 26.6 8.6 70 13-94 3-77 (80)
84 smart00666 PB1 PB1 domain. Pho 87.3 3.3 7.2E-05 26.7 6.1 45 15-71 2-46 (81)
85 PF10302 DUF2407: DUF2407 ubiq 86.8 2.4 5.1E-05 29.7 5.5 57 14-80 2-60 (97)
86 PRK07696 sulfur carrier protei 86.4 6.7 0.00015 25.2 7.4 42 59-101 26-67 (67)
87 PF08825 E2_bind: E2 binding d 85.4 0.9 2E-05 31.1 2.7 61 29-95 1-69 (84)
88 cd00565 ThiS ThiaminS ubiquiti 83.7 4.3 9.3E-05 25.6 5.2 58 28-101 8-65 (65)
89 cd01788 ElonginB Ubiquitin-lik 83.4 10 0.00023 27.8 7.6 71 16-98 4-81 (119)
90 KOG3439|consensus 83.2 6 0.00013 28.8 6.2 70 9-89 25-100 (116)
91 PF12754 Blt1: Cell-cycle cont 82.6 0.4 8.6E-06 40.3 0.0 96 9-105 73-185 (309)
92 PF06234 TmoB: Toluene-4-monoo 81.0 7.6 0.00016 26.9 5.9 63 27-97 17-84 (85)
93 PF14451 Ub-Mut7C: Mut7-C ubiq 80.8 9.3 0.0002 25.8 6.3 54 24-97 22-76 (81)
94 cd06407 PB1_NLP A PB1 domain i 80.7 9 0.00019 25.9 6.1 44 15-70 1-45 (82)
95 PF15044 CLU_N: Mitochondrial 80.1 5.1 0.00011 26.6 4.7 55 32-97 2-58 (76)
96 PRK11130 moaD molybdopterin sy 79.9 10 0.00023 24.9 6.2 57 34-101 25-81 (81)
97 PRK01777 hypothetical protein; 79.7 13 0.00028 25.9 6.8 72 14-98 3-77 (95)
98 TIGR02958 sec_mycoba_snm4 secr 79.5 13 0.00028 32.4 8.3 76 15-96 3-79 (452)
99 PF03671 Ufm1: Ubiquitin fold 77.4 11 0.00024 25.6 5.6 70 14-94 2-75 (76)
100 PF04110 APG12: Ubiquitin-like 77.3 6.1 0.00013 27.3 4.5 60 14-84 1-66 (87)
101 cd01766 Ufm1 Urm1-like ubiquit 77.2 16 0.00035 24.9 6.4 59 28-97 19-78 (82)
102 cd06408 PB1_NoxR The PB1 domai 77.0 17 0.00037 25.1 6.7 44 14-70 2-45 (86)
103 KOG0013|consensus 77.0 4.6 0.0001 32.6 4.4 82 7-99 138-222 (231)
104 smart00295 B41 Band 4.1 homolo 74.1 12 0.00027 27.4 5.9 35 13-47 2-36 (207)
105 cd05992 PB1 The PB1 domain is 73.9 18 0.00038 23.1 5.9 44 15-70 1-45 (81)
106 PF02196 RBD: Raf-like Ras-bin 73.5 15 0.00034 23.9 5.6 56 18-84 4-61 (71)
107 cd01818 TIAM1_RBD Ubiquitin do 73.2 14 0.00031 25.1 5.4 43 18-71 3-47 (77)
108 cd06396 PB1_NBR1 The PB1 domai 73.2 18 0.00039 24.7 5.9 42 15-70 1-44 (81)
109 COG2104 ThiS Sulfur transfer p 72.8 24 0.00051 23.1 7.8 66 15-101 3-68 (68)
110 PRK11840 bifunctional sulfur c 71.1 26 0.00057 29.7 7.7 67 16-103 2-68 (326)
111 cd01764 Urm1 Urm1-like ubuitin 70.4 32 0.00069 23.6 6.8 68 33-101 27-94 (94)
112 PF09379 FERM_N: FERM N-termin 68.9 19 0.00041 22.9 5.2 39 21-70 3-42 (80)
113 PF14453 ThiS-like: ThiS-like 67.6 25 0.00054 22.5 5.4 47 27-95 8-54 (57)
114 cd01612 APG12_C Ubiquitin-like 63.2 23 0.0005 24.1 4.9 60 14-84 1-66 (87)
115 PF14836 Ubiquitin_3: Ubiquiti 63.2 48 0.001 23.0 7.2 64 26-101 15-84 (88)
116 PF00788 RA: Ras association ( 61.5 41 0.00088 21.6 6.7 60 15-85 3-74 (93)
117 COG2914 Uncharacterized protei 61.3 10 0.00022 26.9 2.9 71 14-97 3-76 (99)
118 cd01777 SNX27_RA Ubiquitin dom 60.6 20 0.00043 24.9 4.2 60 15-85 2-69 (87)
119 KOG1872|consensus 60.1 62 0.0013 28.9 8.1 68 16-95 5-73 (473)
120 KOG3073|consensus 59.7 32 0.0007 27.8 5.8 77 10-90 90-186 (236)
121 COG2080 CoxS Aerobic-type carb 59.5 17 0.00037 27.8 4.1 70 14-95 3-75 (156)
122 PF11620 GABP-alpha: GA-bindin 59.2 43 0.00093 23.4 5.7 60 27-97 5-64 (88)
123 COG5100 NPL4 Nuclear pore prot 58.2 45 0.00098 29.7 6.9 71 16-96 2-78 (571)
124 PF10623 PilI: Plasmid conjuga 56.6 27 0.00059 24.0 4.3 36 12-47 6-41 (83)
125 PF12143 PPO1_KFDV: Protein of 53.3 8.6 0.00019 28.4 1.5 31 73-103 89-119 (130)
126 PF01982 CTP-dep_RFKase: Domai 53.0 8.5 0.00018 28.2 1.5 15 82-96 107-121 (121)
127 cd00508 MopB_CT_Fdh-Nap-like T 50.7 6.8 0.00015 26.6 0.6 22 74-96 38-59 (120)
128 cd02790 MopB_CT_Formate-Dh_H F 49.9 7.4 0.00016 26.4 0.7 19 78-96 41-59 (116)
129 cd06398 PB1_Joka2 The PB1 doma 49.0 85 0.0018 21.5 6.1 43 16-70 2-50 (91)
130 PF03658 Ub-RnfH: RnfH family 49.0 85 0.0018 21.5 6.7 57 27-98 16-74 (84)
131 cd02792 MopB_CT_Formate-Dh-Na- 48.0 7.9 0.00017 26.5 0.6 18 78-95 41-58 (122)
132 COG0179 MhpD 2-keto-4-pentenoa 47.0 88 0.0019 25.6 6.6 47 35-101 210-257 (266)
133 cd02786 MopB_CT_3 The MopB_CT_ 46.4 8.6 0.00019 26.2 0.6 18 78-95 37-54 (116)
134 COG1977 MoaD Molybdopterin con 46.0 22 0.00048 23.7 2.6 58 32-101 25-84 (84)
135 PRK14132 riboflavin kinase; Pr 45.6 15 0.00032 27.1 1.8 15 82-96 112-126 (126)
136 cd06395 PB1_Map2k5 PB1 domain 45.4 65 0.0014 22.4 4.7 56 15-96 1-58 (91)
137 PF00018 SH3_1: SH3 domain; I 44.0 20 0.00044 20.9 1.9 22 79-100 9-30 (48)
138 KOG1363|consensus 43.9 59 0.0013 28.8 5.5 43 5-47 374-416 (460)
139 PF01568 Molydop_binding: Moly 43.4 10 0.00022 25.4 0.6 19 78-96 36-54 (110)
140 KOG4225|consensus 43.3 15 0.00032 32.6 1.7 20 78-97 443-462 (489)
141 cd02791 MopB_CT_Nitrate-R-NapA 42.9 11 0.00023 25.9 0.6 18 78-95 41-58 (122)
142 cd02783 MopB_CT_2 The MopB_CT_ 41.4 11 0.00025 27.7 0.6 19 78-96 38-56 (156)
143 cd02787 MopB_CT_ydeP The MopB_ 41.3 11 0.00024 25.7 0.5 20 78-97 37-56 (112)
144 cd02794 MopB_CT_DmsA-EC The Mo 41.1 12 0.00026 25.9 0.7 21 74-95 33-53 (121)
145 KOG1364|consensus 41.0 42 0.00091 28.9 4.0 78 3-90 266-348 (356)
146 PRK14165 winged helix-turn-hel 40.6 21 0.00046 28.3 2.1 15 83-97 202-216 (217)
147 PF03607 DCX: Doublecortin; I 40.6 46 0.00099 20.8 3.3 45 33-94 7-53 (60)
148 KOG2982|consensus 40.4 79 0.0017 27.5 5.5 70 16-96 338-416 (418)
149 TIGR03028 EpsE polysaccharide 40.0 1E+02 0.0022 24.1 5.9 71 11-95 65-160 (239)
150 cd02779 MopB_CT_Arsenite-Ox Th 39.9 13 0.00027 25.7 0.6 19 78-96 39-57 (115)
151 cd02785 MopB_CT_4 The MopB_CT_ 39.7 13 0.00027 25.9 0.6 18 78-95 38-55 (124)
152 cd02781 MopB_CT_Acetylene-hydr 39.4 13 0.00029 25.8 0.7 18 78-95 39-56 (130)
153 COG4841 Uncharacterized protei 38.3 31 0.00068 24.3 2.4 21 82-103 15-35 (95)
154 cd02778 MopB_CT_Thiosulfate-R- 38.3 14 0.0003 25.4 0.6 18 78-95 36-53 (123)
155 cd02777 MopB_CT_DMSOR-like The 38.1 14 0.0003 25.8 0.6 18 78-95 40-57 (127)
156 KOG1639|consensus 38.0 71 0.0015 26.7 4.7 57 29-95 17-77 (297)
157 cd01768 RA RA (Ras-associating 37.5 1.1E+02 0.0025 19.6 6.5 56 17-83 2-68 (87)
158 KOG3483|consensus 36.6 1.4E+02 0.0031 20.6 7.5 76 11-97 10-89 (94)
159 cd02782 MopB_CT_1 The MopB_CT_ 36.5 16 0.00034 25.5 0.6 18 78-95 39-56 (129)
160 KOG1407|consensus 36.3 47 0.001 27.9 3.5 92 12-118 190-287 (313)
161 cd01611 GABARAP Ubiquitin doma 36.1 70 0.0015 22.8 4.0 62 12-84 22-90 (112)
162 PF02824 TGS: TGS domain; Int 35.8 1.1E+02 0.0024 19.0 5.7 58 18-95 2-59 (60)
163 cd02784 MopB_CT_PHLH The MopB_ 35.6 16 0.00035 26.8 0.6 20 78-97 44-63 (137)
164 PF08620 RPAP1_C: RPAP1-like, 35.4 23 0.0005 23.7 1.3 11 65-75 2-12 (73)
165 COG5131 URM1 Ubiquitin-like pr 35.1 38 0.00083 23.9 2.4 57 34-101 29-96 (96)
166 cd02788 MopB_CT_NDH-1_NuoG2-N7 35.0 17 0.00037 24.4 0.6 18 78-95 35-52 (96)
167 PRK05388 argJ bifunctional orn 34.8 1E+02 0.0022 26.9 5.4 52 60-114 322-381 (395)
168 cd02793 MopB_CT_DMSOR-BSOR-TMA 34.3 18 0.00039 25.5 0.7 18 78-95 39-56 (129)
169 PF06793 UPF0262: Uncharacteri 34.2 1.1E+02 0.0024 23.5 5.0 40 14-53 62-101 (158)
170 cd02776 MopB_CT_Nitrate-R-NarG 33.7 19 0.0004 26.3 0.7 18 79-96 38-55 (141)
171 cd02789 MopB_CT_FmdC-FwdD The 33.3 19 0.00042 24.7 0.7 18 78-95 37-54 (106)
172 cd02775 MopB_CT Molybdopterin- 33.3 19 0.00042 23.4 0.7 18 78-95 29-46 (101)
173 PF06071 YchF-GTPase_C: Protei 32.9 27 0.00059 24.0 1.4 15 82-96 69-83 (84)
174 PF13670 PepSY_2: Peptidase pr 32.7 1E+02 0.0022 20.0 4.1 25 11-35 52-76 (83)
175 PF14604 SH3_9: Variant SH3 do 32.1 37 0.00081 20.2 1.8 19 79-97 8-26 (49)
176 COG0139 HisI Phosphoribosyl-AM 31.9 46 0.001 24.1 2.5 43 62-104 55-98 (111)
177 PF14478 DUF4430: Domain of un 31.7 61 0.0013 20.5 2.8 27 66-94 41-67 (68)
178 cd02780 MopB_CT_Tetrathionate_ 31.0 21 0.00046 25.5 0.6 18 78-95 36-53 (143)
179 cd06410 PB1_UP2 Uncharacterize 30.9 1.8E+02 0.004 20.1 5.6 40 19-70 17-56 (97)
180 PF10787 YfmQ: Uncharacterised 30.4 38 0.00081 25.7 1.9 37 33-80 23-59 (149)
181 PF04014 Antitoxin-MazE: Antid 30.2 47 0.001 19.5 2.0 16 82-97 17-32 (47)
182 PRK02853 hypothetical protein; 30.1 1.4E+02 0.0031 23.0 4.9 40 14-53 65-104 (161)
183 TIGR02988 YaaA_near_RecF S4 do 29.2 15 0.00033 22.6 -0.3 25 66-94 34-58 (59)
184 PF11069 DUF2870: Protein of u 29.2 83 0.0018 22.3 3.3 39 66-104 2-41 (98)
185 cd01668 TGS_RelA_SpoT TGS_RelA 28.8 1.3E+02 0.0027 17.6 6.1 54 22-95 6-59 (60)
186 PF03633 Glyco_hydro_65C: Glyc 28.3 21 0.00045 21.6 0.2 33 64-96 10-45 (54)
187 PF05681 Fumerase: Fumarate hy 27.9 1.7E+02 0.0038 24.0 5.5 78 21-103 58-140 (271)
188 cd06411 PB1_p51 The PB1 domain 27.9 2E+02 0.0043 19.5 5.2 35 26-71 8-42 (78)
189 PF07653 SH3_2: Variant SH3 do 27.5 54 0.0012 19.6 1.9 17 79-95 11-27 (55)
190 PF14365 DUF4409: Domain of un 27.3 33 0.00072 24.5 1.1 10 86-95 4-13 (117)
191 PF00498 FHA: FHA domain; Int 25.6 47 0.001 20.2 1.5 23 69-94 45-67 (68)
192 smart00326 SH3 Src homology 3 25.4 1E+02 0.0022 17.2 2.9 20 79-98 14-33 (58)
193 PF12436 USP7_ICP0_bdg: ICP0-b 25.3 2.9E+02 0.0064 21.9 6.3 46 14-70 176-224 (249)
194 PHA01623 hypothetical protein 25.3 55 0.0012 20.5 1.7 23 25-47 12-34 (56)
195 cd06404 PB1_aPKC PB1 domain is 25.1 2.3E+02 0.0051 19.4 6.1 50 15-76 1-54 (83)
196 cd01669 TGS_Ygr210_C TGS_Ygr21 24.9 51 0.0011 21.8 1.6 19 77-95 57-75 (76)
197 KOG2086|consensus 24.6 2.2E+02 0.0049 24.7 5.8 63 13-88 306-372 (380)
198 PF06487 SAP18: Sin3 associate 24.3 2.8E+02 0.0061 20.0 7.3 72 25-96 37-120 (120)
199 KOG4146|consensus 24.2 80 0.0017 22.5 2.5 20 82-101 82-101 (101)
200 PF03072 DUF237: MG032/MG096/M 23.5 3.2E+02 0.007 20.5 5.8 53 34-97 66-128 (137)
201 COG5569 Uncharacterized conser 23.4 69 0.0015 23.0 2.1 22 84-105 82-103 (108)
202 PF13180 PDZ_2: PDZ domain; PD 22.8 1.2E+02 0.0026 19.2 3.1 40 59-98 30-71 (82)
203 TIGR02609 doc_partner putative 22.7 71 0.0015 20.8 1.9 17 81-97 19-35 (74)
204 COG1188 Ribosome-associated he 22.6 1.3E+02 0.0028 21.4 3.3 29 63-96 31-59 (100)
205 PF02991 Atg8: Autophagy prote 22.5 2.8E+02 0.0061 19.4 5.7 61 13-84 15-82 (104)
206 PF01502 PRA-CH: Phosphoribosy 22.5 89 0.0019 21.0 2.4 40 62-101 23-63 (75)
207 COG1791 Uncharacterized conser 22.4 1.6E+02 0.0035 23.0 4.1 55 29-94 71-130 (181)
208 PRK09908 xanthine dehydrogenas 21.8 2E+02 0.0044 21.9 4.5 60 14-84 8-70 (159)
209 cd01817 RGS12_RBD Ubiquitin do 21.4 2.6E+02 0.0057 18.7 7.1 48 22-80 7-55 (73)
210 PRK11433 aldehyde oxidoreducta 21.4 2.9E+02 0.0062 22.1 5.5 72 13-95 50-123 (217)
211 KOG3309|consensus 21.2 1.9E+02 0.0041 22.3 4.2 32 11-42 40-71 (159)
212 smart00758 PA14 domain in bact 21.1 2.4E+02 0.0052 19.3 4.5 55 63-117 67-129 (136)
213 PF10209 DUF2340: Uncharacteri 21.1 3.5E+02 0.0075 19.9 6.4 65 31-95 22-106 (122)
214 cd01666 TGS_DRG_C TGS_DRG_C: 20.9 2.6E+02 0.0056 18.4 5.3 21 70-95 54-74 (75)
215 TIGR00120 ArgJ glutamate N-ace 20.1 2.8E+02 0.006 24.3 5.5 52 60-114 327-390 (404)
No 1
>KOG1769|consensus
Probab=99.97 E-value=4.6e-31 Score=185.83 Aligned_cols=81 Identities=68% Similarity=1.068 Sum_probs=79.3
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT 91 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~ 91 (126)
+.+|+|||+++++.+++|+||++|||+|||++||++ .|++.+++||+|||.||.+++||++|+|||||+
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r-----------~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~ 86 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCER-----------QGLSMNSLRFLFDGQRIRETHTPADLEMEDGDE 86 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHH-----------cCCccceEEEEECCcCcCCCCChhhhCCcCCcE
Confidence 589999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred EEEEeeecCCCc
Q psy4523 92 IEIYQQQTGGFK 103 (126)
Q Consensus 92 Idv~~~Q~GG~~ 103 (126)
|+|+..|+||.+
T Consensus 87 Iev~~~q~gG~~ 98 (99)
T KOG1769|consen 87 IEVVQEQTGGFG 98 (99)
T ss_pred EEEEeecccCCC
Confidence 999999999975
No 2
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.8e-27 Score=165.07 Aligned_cols=83 Identities=47% Similarity=0.745 Sum_probs=79.6
Q ss_pred CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523 10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG 89 (126)
Q Consensus 10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG 89 (126)
...++|.|+|.+|+|.+++|+||.+|+|+|||++||.+ .|...+++||+|||+||..++||.+|+|||+
T Consensus 20 p~t~hinLkvv~qd~telfFkiKktT~f~klm~af~~r-----------qGK~m~slRfL~dG~rI~~dqTP~dldmEdn 88 (103)
T COG5227 20 PITKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRR-----------QGKNMSSLRFLFDGKRIDLDQTPGDLDMEDN 88 (103)
T ss_pred ccccccceEEecCCCCEEEEEEeccchHHHHHHHHHHH-----------hCcCcceeEEEEcceecCCCCChhhcCCccc
Confidence 34568999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CEEEEEeeecCCCc
Q psy4523 90 DTIEIYQQQTGGFK 103 (126)
Q Consensus 90 D~Idv~~~Q~GG~~ 103 (126)
|+|+++.+|+||+-
T Consensus 89 d~iEav~eQvGG~t 102 (103)
T COG5227 89 DEIEAVTEQVGGAT 102 (103)
T ss_pred hHHHHHHHHhcCcc
Confidence 99999999999974
No 3
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.93 E-value=2.4e-25 Score=152.21 Aligned_cols=86 Identities=60% Similarity=0.949 Sum_probs=82.4
Q ss_pred ccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCcccc
Q psy4523 5 KKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTL 84 (126)
Q Consensus 5 ~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL 84 (126)
+.+..+.+.+|+|+|++++|..+.|+|+++++|++||++||++ .|+++++++|+|+|++|.+++||++|
T Consensus 2 ~~~~~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~-----------~gi~~~~~rf~f~G~~L~~~~T~~~l 70 (87)
T cd01763 2 KSGKGEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQR-----------QGLSMNSVRFLFDGQRIRDNQTPDDL 70 (87)
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHH-----------hCCCccceEEEECCeECCCCCCHHHc
Confidence 3455788999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCCCCEEEEEeeecCC
Q psy4523 85 EMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 85 ~MeDGD~Idv~~~Q~GG 101 (126)
+|+|||+|+|+++|.||
T Consensus 71 ~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 71 GMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCCCCCEEEEEEecccC
Confidence 99999999999999998
No 4
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.86 E-value=1.6e-21 Score=127.30 Aligned_cols=71 Identities=38% Similarity=0.762 Sum_probs=66.4
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc-ceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM-STVRFRFDGQAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~-~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id 93 (126)
|+|+|++++|..+.|+|++++||++|+++||++ .|++. ++++|.|||++|++++||++++|+|||+|+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~-----------~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Id 69 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEK-----------KGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTID 69 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHH-----------HTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHh-----------hCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEE
Confidence 789999999999999999999999999999999 99999 999999999999999999999999999999
Q ss_pred EEe
Q psy4523 94 IYQ 96 (126)
Q Consensus 94 v~~ 96 (126)
|.+
T Consensus 70 v~I 72 (72)
T PF11976_consen 70 VII 72 (72)
T ss_dssp EE-
T ss_pred EEC
Confidence 975
No 5
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.49 E-value=2.5e-13 Score=88.50 Aligned_cols=76 Identities=16% Similarity=0.368 Sum_probs=72.3
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
+.|.|+..+|+.+.+.|.++.+++.|++.++++ .|++++.++|.|+|+.|.++.|.++++++||++|++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~-----------~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l 69 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-----------EGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHL 69 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHh-----------hCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEE
Confidence 467888888999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeeecCC
Q psy4523 95 YQQQTGG 101 (126)
Q Consensus 95 ~~~Q~GG 101 (126)
.+++.||
T Consensus 70 ~~~~~gg 76 (76)
T cd01806 70 VLALRGG 76 (76)
T ss_pred EEEccCC
Confidence 9999887
No 6
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.28 E-value=3.8e-11 Score=78.16 Aligned_cols=76 Identities=12% Similarity=0.317 Sum_probs=71.6
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
+.|.|++.+|+.+.+.+.++.++..|++.++++ .|++++.++|.|+|+.|.++.|.+++++++|++|++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 69 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 69 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHH-----------hCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEE
Confidence 357777788999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeeecCC
Q psy4523 95 YQQQTGG 101 (126)
Q Consensus 95 ~~~Q~GG 101 (126)
.++..||
T Consensus 70 ~~~~~gg 76 (76)
T cd01803 70 VLRLRGG 76 (76)
T ss_pred EEEccCC
Confidence 9999987
No 7
>PTZ00044 ubiquitin; Provisional
Probab=99.26 E-value=5.6e-11 Score=78.00 Aligned_cols=76 Identities=16% Similarity=0.348 Sum_probs=71.7
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
+.|.|+..+|+.+.+.+.+++++..|+...+++ .|++++.+++.|+|+.+.++.|.+++++++|++|++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~-----------~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l 69 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEK-----------EGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHM 69 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEE
Confidence 357778888999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeeecCC
Q psy4523 95 YQQQTGG 101 (126)
Q Consensus 95 ~~~Q~GG 101 (126)
.+...||
T Consensus 70 ~~~~~gg 76 (76)
T PTZ00044 70 VLQLRGG 76 (76)
T ss_pred EEEccCC
Confidence 9998887
No 8
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.20 E-value=1.3e-10 Score=76.62 Aligned_cols=74 Identities=12% Similarity=0.302 Sum_probs=69.5
Q ss_pred EEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523 17 LKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 17 Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~ 96 (126)
|.|++..|+.+.+.|.++.++..|++..++. .|+++..+++.|+|+.|.++.|..++++++|++|++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-----------~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQR-----------ERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHH-----------hCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 3566778998899999999999999999999 99999999999999999999999999999999999999
Q ss_pred eecCC
Q psy4523 97 QQTGG 101 (126)
Q Consensus 97 ~Q~GG 101 (126)
...||
T Consensus 70 ~l~gg 74 (74)
T cd01810 70 RLRGG 74 (74)
T ss_pred EccCC
Confidence 98887
No 9
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.17 E-value=2.7e-10 Score=73.38 Aligned_cols=71 Identities=21% Similarity=0.428 Sum_probs=66.8
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
|+|.|+..+|+.+.+.+.++.++..|++.++++ .|++++..++.|+|+.|.++.|.+++++.+|++|++
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~-----------~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l 69 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEE-----------VGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHL 69 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEE
Confidence 578888888999999999999999999999999 999999999999999999999999999999999988
Q ss_pred Ee
Q psy4523 95 YQ 96 (126)
Q Consensus 95 ~~ 96 (126)
..
T Consensus 70 ~~ 71 (72)
T cd01809 70 VK 71 (72)
T ss_pred Ee
Confidence 65
No 10
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.16 E-value=3.5e-10 Score=79.94 Aligned_cols=78 Identities=8% Similarity=0.205 Sum_probs=74.4
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I 92 (126)
+.+.|.|+...|+.+.+.|.+++++..|++..+++ .|++.+..+++|.|+.|.++.|.+++++++|++|
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL 94 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRL-----------EGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTL 94 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-----------hCCChHHEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 36889999988999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEeeecCC
Q psy4523 93 EIYQQQTGG 101 (126)
Q Consensus 93 dv~~~Q~GG 101 (126)
++.+...||
T Consensus 95 ~l~~~l~GG 103 (103)
T cd01802 95 KLVLAMRGG 103 (103)
T ss_pred EEEEecCCC
Confidence 999999887
No 11
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.16 E-value=3.4e-10 Score=74.59 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=67.4
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
.|.|++ ++...+.|.+++++..|+...+++ .|++++..+++|.|+.|.++.|.++++++++++|++.
T Consensus 2 qi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~-----------~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01793 2 QLFVRA--QNTHTLEVTGQETVSDIKAHVAGL-----------EGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVA 68 (74)
T ss_pred EEEEEC--CCEEEEEECCcCcHHHHHHHHHhh-----------hCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 466665 356789999999999999999999 9999999999999999999999999999999999999
Q ss_pred eeecCC
Q psy4523 96 QQQTGG 101 (126)
Q Consensus 96 ~~Q~GG 101 (126)
++..||
T Consensus 69 ~~l~GG 74 (74)
T cd01793 69 GRLLGG 74 (74)
T ss_pred EecCCC
Confidence 999887
No 12
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.15 E-value=3.4e-10 Score=74.50 Aligned_cols=72 Identities=14% Similarity=0.220 Sum_probs=67.2
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
.|.|+..+|+.+.+.|.++++++.|++..+++ .|++++..+++|+|+.|.++.|.+++++.+|++|.++
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~-----------~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~ 70 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEH-----------LNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLV 70 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 56677778999999999999999999999999 9999999999999999999999999999999999998
Q ss_pred eee
Q psy4523 96 QQQ 98 (126)
Q Consensus 96 ~~Q 98 (126)
+++
T Consensus 71 ~~~ 73 (74)
T cd01807 71 VRP 73 (74)
T ss_pred EcC
Confidence 764
No 13
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.15 E-value=4.3e-10 Score=75.28 Aligned_cols=76 Identities=9% Similarity=0.235 Sum_probs=71.2
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
++|.|+...|+...+.+.++.++..|++..+++ .|++++.+||.|.|+.|.++ |.++++++||++|.+
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~-----------~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l 69 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQR-----------LKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTL 69 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHH-----------hCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEE
Confidence 577888888998899999999999999999999 89999999999999999988 999999999999999
Q ss_pred EeeecCCC
Q psy4523 95 YQQQTGGF 102 (126)
Q Consensus 95 ~~~Q~GG~ 102 (126)
+..+.||.
T Consensus 70 ~~~~~~~~ 77 (78)
T cd01804 70 VPTVEAGL 77 (78)
T ss_pred EeeccccC
Confidence 99998884
No 14
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.14 E-value=3.8e-10 Score=72.52 Aligned_cols=67 Identities=13% Similarity=0.328 Sum_probs=63.4
Q ss_pred eccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeee
Q psy4523 21 GQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 21 ~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q 98 (126)
..+|+.+.+.|.+++++..|++..++. .|++++.++|.|+|+.|.++.|..++++.+|++|.+.+++
T Consensus 2 ~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 2 TLSGKTFTLEVDPDDTVADLKQKIAEE-----------TGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp ETTSEEEEEEEETTSBHHHHHHHHHHH-----------HTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCcEEEEEECCCCCHHHhhhhcccc-----------cccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 356788899999999999999999999 9999999999999999999999999999999999999876
No 15
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.08 E-value=1.3e-09 Score=71.57 Aligned_cols=73 Identities=8% Similarity=0.230 Sum_probs=67.3
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC--ccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL--SMSTVRFRFDGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl--~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I 92 (126)
+.|.|+..+|..+.+.+.++++...|++.++++ .|+ +++.++++|+|+.|.++.|.+++++.+|++|
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~-----------~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i 69 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEE-----------KGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFV 69 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHh-----------hCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEE
Confidence 356777778888899999999999999999999 898 8999999999999999999999999999999
Q ss_pred EEEeee
Q psy4523 93 EIYQQQ 98 (126)
Q Consensus 93 dv~~~Q 98 (126)
.+++.+
T Consensus 70 ~~~~~~ 75 (77)
T cd01805 70 VVMVSK 75 (77)
T ss_pred EEEEec
Confidence 998875
No 16
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.08 E-value=9.9e-10 Score=73.21 Aligned_cols=71 Identities=11% Similarity=0.151 Sum_probs=67.4
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
|.|.|++..|..+.+.+.++.++..|++..+++ .|++++.+||+|.|+.|.++.|.+++++.+|.+|++
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~-----------~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l 70 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQ-----------TGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLEL 70 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHH-----------hCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEE
Confidence 688999888999999999999999999999999 999999999999999999999999999999999998
Q ss_pred Ee
Q psy4523 95 YQ 96 (126)
Q Consensus 95 ~~ 96 (126)
+.
T Consensus 71 ~~ 72 (73)
T cd01791 71 YY 72 (73)
T ss_pred Ee
Confidence 75
No 17
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.06 E-value=8.5e-10 Score=71.11 Aligned_cols=70 Identities=11% Similarity=0.248 Sum_probs=64.3
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
|+|.|+.. |+...+.+.++.++..|++..++. .|++++.++++|+|+.+.++.|..++++.+|++|.+
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~-----------~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v 68 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPV-----------TGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHh-----------hCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEE
Confidence 57778775 777789999999999999999999 999999999999999999999999999999999988
Q ss_pred Ee
Q psy4523 95 YQ 96 (126)
Q Consensus 95 ~~ 96 (126)
+.
T Consensus 69 ~~ 70 (71)
T cd01812 69 LE 70 (71)
T ss_pred ec
Confidence 64
No 18
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.00 E-value=2.6e-09 Score=69.43 Aligned_cols=68 Identities=13% Similarity=0.273 Sum_probs=63.5
Q ss_pred EEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523 18 KVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 18 kv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~ 96 (126)
.|+...|..+.+.+.++++++.|++..+++ .|++.+.++|+|.|+.|.++.|.+++++++|.+|++..
T Consensus 2 ~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 2 YVRTNTGHTFPVEVDPDTDIKQLKEVVAKR-----------QGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred EEEcCCCCEEEEEECCCChHHHHHHHHHHH-----------HCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 456677899999999999999999999999 99999999999999999999999999999999998864
No 19
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=98.98 E-value=3.9e-09 Score=70.93 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=66.2
Q ss_pred EEEEEeccCCE-EEEE-ecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523 16 NLKVLGQDNNV-VQFK-IKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 16 ~Ikv~~~~g~~-v~fk-Ik~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id 93 (126)
.|.|+...|.. +.+. +.++++++.|++..+++ .|++++..|++|.|+.|.++.|.+++++++|++|.
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~-----------~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~ 70 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQEL-----------FNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQ 70 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHH-----------hCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEE
Confidence 56777778887 4674 89999999999999999 99999999999999999999999999999999999
Q ss_pred EEeeec
Q psy4523 94 IYQQQT 99 (126)
Q Consensus 94 v~~~Q~ 99 (126)
+.++|-
T Consensus 71 l~~~~~ 76 (78)
T cd01797 71 LLVRQD 76 (78)
T ss_pred EEEecC
Confidence 998864
No 20
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.94 E-value=5.8e-09 Score=69.82 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=68.1
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEE--EECCeecCCCCCccccCCCCCCEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRF--RFDGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF--~fdG~rL~~~~TP~dL~MeDGD~I 92 (126)
|.|.|+...|+.+.+.+.++.+...|++..++. .|++++.+|| .|+|+.|.++.|.+++++++|++|
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~-----------~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l 71 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQK-----------IGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTV 71 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHH-----------hCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEE
Confidence 778888888999999999999999999999999 8999999999 889999999999999999999999
Q ss_pred EEEeee
Q psy4523 93 EIYQQQ 98 (126)
Q Consensus 93 dv~~~Q 98 (126)
.++++.
T Consensus 72 ~l~~~~ 77 (80)
T cd01792 72 LLVVQN 77 (80)
T ss_pred EEEEEc
Confidence 998873
No 21
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=98.93 E-value=6.4e-09 Score=69.00 Aligned_cols=70 Identities=16% Similarity=0.401 Sum_probs=65.7
Q ss_pred cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCCC
Q psy4523 23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGF 102 (126)
Q Consensus 23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG~ 102 (126)
+|..+.+.+.+++++..|++..... .|++++..+++|.|+.+.++.|.+++++.+|++|.+++.+.||.
T Consensus 6 ~g~~~~l~v~~~~TV~~lK~~i~~~-----------~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 6 NGQMLNFTLQLSDPVSVLKVKIHEE-----------TGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHH-----------HCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 4677789999999999999999999 99999999999999999999999999999999999999999875
Q ss_pred c
Q psy4523 103 K 103 (126)
Q Consensus 103 ~ 103 (126)
.
T Consensus 75 ~ 75 (76)
T cd01800 75 K 75 (76)
T ss_pred C
Confidence 3
No 22
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=98.91 E-value=8.2e-09 Score=68.06 Aligned_cols=69 Identities=12% Similarity=0.230 Sum_probs=64.5
Q ss_pred EEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523 17 LKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 17 Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~ 96 (126)
+||+...|+.+.+.+.+++++..|+...++. .|+++...+++|.|+.|.++.|.+++++++|.+|++.+
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~-----------~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAA-----------EGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHH-----------hCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 3566678999999999999999999999999 99999999999999999999999999999999999976
No 23
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=98.90 E-value=1.2e-08 Score=66.64 Aligned_cols=71 Identities=14% Similarity=0.323 Sum_probs=63.6
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
|+|.|+...|. ..+.|.++.+...|++..+++ .|++...+++.|+|+.|.++.|.+++++++|++|++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~-----------~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l 68 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKK-----------FKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHL 68 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHH-----------hCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEE
Confidence 35666667776 489999999999999999999 899999999999999999999999999999999998
Q ss_pred Eee
Q psy4523 95 YQQ 97 (126)
Q Consensus 95 ~~~ 97 (126)
.++
T Consensus 69 ~~~ 71 (71)
T cd01808 69 VIK 71 (71)
T ss_pred EEC
Confidence 763
No 24
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=98.87 E-value=1.3e-08 Score=63.41 Aligned_cols=64 Identities=17% Similarity=0.405 Sum_probs=58.0
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD 90 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD 90 (126)
|.|.|++.+ ....+.|.+++++..|+..++++ .|++++.++++|+|+.|.++.|..++++.+|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~-----------~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAEL-----------TGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHH-----------HCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 356777766 56789999999999999999999 99999999999999999999999999999986
No 25
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.77 E-value=5.5e-08 Score=61.23 Aligned_cols=67 Identities=12% Similarity=0.303 Sum_probs=61.6
Q ss_pred EEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523 19 VLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 19 v~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~ 96 (126)
|+..+|....+.+.++++++.|++.++++ .|++++.++|.|+|+.+.++.|..++++.+|+.|.+..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~-----------~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAK-----------EGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHH-----------HCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 44456888899999999999999999999 89999999999999999999999999999999999864
No 26
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=98.67 E-value=1.3e-07 Score=62.13 Aligned_cols=66 Identities=9% Similarity=0.236 Sum_probs=58.7
Q ss_pred EEec-cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCC-CCccccCCCCCCEEEEE
Q psy4523 19 VLGQ-DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQ-DTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 19 v~~~-~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~-~TP~dL~MeDGD~Idv~ 95 (126)
|+.. .|+.+.+.|.++.++..|+...+++ .|++.+..+++|+|+.|.++ .|.+++++++|++|.+.
T Consensus 3 v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~-----------~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 3 VYTARSETTFSLDVDPDLELENFKALCEAE-----------SGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred EEECCCCCEEEEEECCcCCHHHHHHHHHHH-----------hCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 3444 5777889999999999999999999 99999999999999999887 57899999999998763
No 27
>KOG0005|consensus
Probab=98.55 E-value=1e-07 Score=62.55 Aligned_cols=68 Identities=13% Similarity=0.319 Sum_probs=64.0
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
.|+|+...|+++.+.|.+++++.++++...+. .|+++...|++|-|+++.++.|++++.++-|.+++.
T Consensus 2 ~iKvktLt~KeIeidIep~DkverIKErvEEk-----------eGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHl 69 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-----------EGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHL 69 (70)
T ss_pred eeeEeeeccceEEEeeCcchHHHHHHHHhhhh-----------cCCCchhhhhhhccccccccccHHHhhhccceeEee
Confidence 47788888999999999999999999999999 999999999999999999999999999999998764
No 28
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=5.8e-07 Score=76.30 Aligned_cols=76 Identities=9% Similarity=0.243 Sum_probs=68.7
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhcc---CccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN---LSMSTVRFRFDGQAINEQDTPSTLEMEEGDT 91 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~g---l~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~ 91 (126)
+.|.|++.+|..+.+.|..+.++..||+..++. .| ++.+.++|+|.|+.|.++.|..++++++||+
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~-----------~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~ 69 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAE-----------QGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDF 69 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHh-----------hCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCE
Confidence 357777778898899999999999999999999 87 8899999999999999999999999999999
Q ss_pred EEEEeeecCC
Q psy4523 92 IEIYQQQTGG 101 (126)
Q Consensus 92 Idv~~~Q~GG 101 (126)
|.+++.....
T Consensus 70 Ivvmv~k~k~ 79 (378)
T TIGR00601 70 VVVMVSKPKT 79 (378)
T ss_pred EEEEeccCCC
Confidence 9999886543
No 29
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.42 E-value=1.8e-06 Score=57.77 Aligned_cols=62 Identities=15% Similarity=0.260 Sum_probs=56.4
Q ss_pred cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecC-CCCCccccCCC-CCCEEEEEe
Q psy4523 23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAIN-EQDTPSTLEME-EGDTIEIYQ 96 (126)
Q Consensus 23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~-~~~TP~dL~Me-DGD~Idv~~ 96 (126)
.|..+.+.|.++.++..|+...+++ .|++++..|+ |+|+++. ++.|.++++++ +||++.+++
T Consensus 11 ~~~t~~l~v~~~~TV~~lK~kI~~~-----------~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 11 HTVTIWLTVRPDMTVAQLKDKVFLD-----------YGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 4677889999999999999999999 9999999999 9999996 66999999999 889998875
No 30
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=98.40 E-value=1.7e-06 Score=58.99 Aligned_cols=71 Identities=7% Similarity=0.065 Sum_probs=61.7
Q ss_pred cEEEEEEeccCCEEEEEe--cCCCcHHHHHHHHHHHhhhhhhhhhhhcc--CccceeEEEECCeecCCCCCccccC--CC
Q psy4523 14 HINLKVLGQDNNVVQFKI--KKGTPLRKLMNAYCERCVSILSVLITLQN--LSMSTVRFRFDGQAINEQDTPSTLE--ME 87 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkI--k~tt~l~kL~~~y~~~~~~~~~~~~~~~g--l~~~~~rF~fdG~rL~~~~TP~dL~--Me 87 (126)
.|+|.|++.++....|.| .++.+.+.|++..++. .+ .+++..||+|.|+-|.+++|.+++. +.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~-----------~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~ 69 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRV-----------YPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQD 69 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHh-----------cCCCCChhHeEEEEcCeeccchhhHHHHhhccc
Confidence 378999998888866666 8999999999999988 54 3468999999999999999999996 99
Q ss_pred CCCEEEEE
Q psy4523 88 EGDTIEIY 95 (126)
Q Consensus 88 DGD~Idv~ 95 (126)
+|.+|+..
T Consensus 70 ~~~tiHLV 77 (79)
T cd01790 70 EYHMVHLV 77 (79)
T ss_pred CCceEEEE
Confidence 99999875
No 31
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=98.32 E-value=3.9e-06 Score=55.75 Aligned_cols=68 Identities=9% Similarity=0.021 Sum_probs=60.0
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE---CCeecCCCCCccccCCCCCCEE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF---DGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f---dG~rL~~~~TP~dL~MeDGD~I 92 (126)
+|.|.. .|....+.+..++++..|++..++. .|++++..+++| .|+.+.++.|..++++.+|+.|
T Consensus 2 ~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~-----------tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i 69 (74)
T cd01813 2 PVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTL-----------TGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKI 69 (74)
T ss_pred EEEEEE-CCEEEEEEECCCCCHHHHHHHHHHH-----------HCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEE
Confidence 344443 4677789999999999999999999 999999999996 8999999999999999999998
Q ss_pred EEE
Q psy4523 93 EIY 95 (126)
Q Consensus 93 dv~ 95 (126)
.++
T Consensus 70 ~lm 72 (74)
T cd01813 70 MMM 72 (74)
T ss_pred EEE
Confidence 775
No 32
>KOG0010|consensus
Probab=98.22 E-value=2.9e-06 Score=74.00 Aligned_cols=74 Identities=12% Similarity=0.275 Sum_probs=68.8
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id 93 (126)
.|.|+|++.+. +..|.|..+..++.||+..+.+ .+.+.+.++++|.|+.|++++|...+++.||-+|+
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~-----------f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvH 82 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQR-----------FGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVH 82 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHh-----------cCCChhHeeeeecCccccChhhHHHcCCCCCcEEE
Confidence 58899998766 6789999999999999999999 88999999999999999999999999999999999
Q ss_pred EEeeec
Q psy4523 94 IYQQQT 99 (126)
Q Consensus 94 v~~~Q~ 99 (126)
++++..
T Consensus 83 LVik~~ 88 (493)
T KOG0010|consen 83 LVIKSQ 88 (493)
T ss_pred EEeccC
Confidence 998743
No 33
>KOG0003|consensus
Probab=98.18 E-value=4.3e-07 Score=65.76 Aligned_cols=75 Identities=11% Similarity=0.282 Sum_probs=69.7
Q ss_pred EEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEee
Q psy4523 18 KVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 18 kv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~ 97 (126)
.++.-.|..+++.+.++.++..++....+. .|++++..++.|+|+.|.+.-|.++++|.-.|+|.++.+
T Consensus 4 ~~~~~~GKT~~le~EpS~ti~~vKA~i~~~-----------~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~r 72 (128)
T KOG0003|consen 4 FVKTLTGKTITLEVEPSDTIDNVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (128)
T ss_pred EEEEeeCceEEEEecccchHHHHHHHhccc-----------cCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHH
Confidence 344456899999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ecCCCc
Q psy4523 98 QTGGFK 103 (126)
Q Consensus 98 Q~GG~~ 103 (126)
..||+-
T Consensus 73 L~GG~i 78 (128)
T KOG0003|consen 73 LRGGII 78 (128)
T ss_pred HhcCCC
Confidence 999954
No 34
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.04 E-value=4.6e-05 Score=44.12 Aligned_cols=63 Identities=17% Similarity=0.354 Sum_probs=57.9
Q ss_pred cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523 23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~ 96 (126)
++....+.+.+.++++.+++..+++ .|.+++.++|.++|..+....+..+..+.+|++|.+..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~-----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKK-----------LGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH-----------HCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 6788889999999999999999999 88999999999999999999888899999999998864
No 35
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=97.96 E-value=1.9e-05 Score=53.44 Aligned_cols=52 Identities=17% Similarity=0.299 Sum_probs=46.8
Q ss_pred CCcHHHHHHHHHHHhhhhhhhhhhhc--cC-ccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523 34 GTPLRKLMNAYCERCVSILSVLITLQ--NL-SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 34 tt~l~kL~~~y~~~~~~~~~~~~~~~--gl-~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~ 96 (126)
+++...|++..+++ . |+ +++++|++|.|+.|.++.|.+++++.+|++|.++.
T Consensus 20 ~~TV~~LK~kI~~~-----------~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 20 GYQVSTLKQLIAAQ-----------LPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCcHHHHHHHHHHh-----------hccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 67899999999999 5 35 48889999999999999999999999999998874
No 36
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=97.84 E-value=0.00016 Score=48.99 Aligned_cols=71 Identities=15% Similarity=0.320 Sum_probs=58.4
Q ss_pred EEEEEEec-cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEE-EECCe-----ec-CCCCCccccCC
Q psy4523 15 INLKVLGQ-DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRF-RFDGQ-----AI-NEQDTPSTLEM 86 (126)
Q Consensus 15 I~Ikv~~~-~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF-~fdG~-----rL-~~~~TP~dL~M 86 (126)
|+|.|.+. .......++.++.++..|++.-... .|++++..++ +|+|. .+ .++.+..++++
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~-----------~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~ 70 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELV-----------VGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPV 70 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHH-----------HCCCccceEEEEEcCCCCeEeecCCCccEeeeccC
Confidence 44555543 2455678899999999999999999 9999999999 58888 35 57789999999
Q ss_pred CCCCEEEEEe
Q psy4523 87 EEGDTIEIYQ 96 (126)
Q Consensus 87 eDGD~Idv~~ 96 (126)
+||.+|+|.-
T Consensus 71 ~dg~~IhVvD 80 (84)
T cd01789 71 DDGCRIHVID 80 (84)
T ss_pred CCCCEEEEEe
Confidence 9999999874
No 37
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=97.81 E-value=4.9e-05 Score=55.11 Aligned_cols=82 Identities=13% Similarity=0.079 Sum_probs=65.6
Q ss_pred CcEEEEEEeccCCEE-EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCc--cceeEEEECCeecCCCCCccccC----
Q psy4523 13 EHINLKVLGQDNNVV-QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS--MSTVRFRFDGQAINEQDTPSTLE---- 85 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v-~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~--~~~~rF~fdG~rL~~~~TP~dL~---- 85 (126)
+.|.|+++-.||.-+ -|++.++++...|++...+.+.+ .+.|.+ .+.++|+|.|+.|.++.|.++++
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~------~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g 76 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPK------DKEVGPKTVNEVKLISAGKILENSKTVGECRSPVG 76 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhccc------ccccCCCCHHHeEEEeCCeecCCCCcHHHhCCccc
Confidence 478999998999776 69999999999999999977310 114444 88999999999999999999999
Q ss_pred --CCCCCEEEEEeeecC
Q psy4523 86 --MEEGDTIEIYQQQTG 100 (126)
Q Consensus 86 --MeDGD~Idv~~~Q~G 100 (126)
..-+-+++|.++...
T Consensus 77 ~~~~~~~TmHvvlr~~~ 93 (113)
T cd01814 77 DIAGGVITMHVVVQPPL 93 (113)
T ss_pred ccCCCceEEEEEecCCC
Confidence 555567777766443
No 38
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.66 E-value=0.00011 Score=49.80 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=42.6
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC---Ceec--CCCCCccccCCC
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD---GQAI--NEQDTPSTLEME 87 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd---G~rL--~~~~TP~dL~Me 87 (126)
+.|-|+|++.+|- ..+.+.++.++..|++...+. .+++.+.+.+..+ ...+ ..+.|.++|++.
T Consensus 3 ~~milRvrS~dG~-~Rie~~~~~t~~~L~~kI~~~-----------l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglk 70 (80)
T PF11543_consen 3 SSMILRVRSKDGM-KRIEVSPSSTLSDLKEKISEQ-----------LSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLK 70 (80)
T ss_dssp ---EEEEE-SSEE-EEEEE-TTSBHHHHHHHHHHH-----------S---TTT---BSSGGGGGCSSS-TT-CCCCT---
T ss_pred ccEEEEEECCCCC-EEEEcCCcccHHHHHHHHHHH-----------cCCCCcceEEEecCCCCcccccCCcCCHHHcCCC
Confidence 4688999999984 356788999999999999999 7777776665443 3455 468999999999
Q ss_pred CCCEEEE
Q psy4523 88 EGDTIEI 94 (126)
Q Consensus 88 DGD~Idv 94 (126)
.||.|-+
T Consensus 71 HGdmlyL 77 (80)
T PF11543_consen 71 HGDMLYL 77 (80)
T ss_dssp TT-EEE-
T ss_pred CccEEEE
Confidence 9998854
No 39
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.63 E-value=0.00082 Score=48.25 Aligned_cols=73 Identities=21% Similarity=0.291 Sum_probs=57.2
Q ss_pred cEEEEEEeccCC-EEEEEecCCCcHHHHHHHHHHHh-hhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523 14 HINLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERC-VSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT 91 (126)
Q Consensus 14 ~I~Ikv~~~~g~-~v~fkIk~tt~l~kL~~~y~~~~-~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~ 91 (126)
.|+|+++-.+|. ...|...++++...|++.....| ..|.. ...+++.+|++|.|+-|.++.|..++.+--|+.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~-----~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~ 76 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEE-----RPKSPSDLRLIYAGRILEDNKTLSDCRLPSGET 76 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSS-----TT-SGGGEEEEETTEEE-SSSBTGGGT--TTSE
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCcccccc-----CCCChhhEEEEeCCeecCCcCcHHHhCCCCCCC
Confidence 688999988998 66899999999999999999887 32222 344678999999999999999999999999985
No 40
>PLN02560 enoyl-CoA reductase
Probab=97.60 E-value=0.00028 Score=58.53 Aligned_cols=69 Identities=13% Similarity=0.300 Sum_probs=58.3
Q ss_pred EEEEEeccCCEE---EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC-ccceeEEEEC---C----eecCCCCCcccc
Q psy4523 16 NLKVLGQDNNVV---QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL-SMSTVRFRFD---G----QAINEQDTPSTL 84 (126)
Q Consensus 16 ~Ikv~~~~g~~v---~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl-~~~~~rF~fd---G----~rL~~~~TP~dL 84 (126)
+|.|+..+|+.+ .+.+.++++++.|+++++++ .+. +++.+|++++ | ..|.++.|..++
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~-----------~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~ 70 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKR-----------KKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDY 70 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHH-----------cCCCChhheEEEEecCCCCcCccccCCCCCHHhc
Confidence 455666677776 68999999999999999999 776 7899999983 4 378889999999
Q ss_pred CCCCCCEEEEE
Q psy4523 85 EMEEGDTIEIY 95 (126)
Q Consensus 85 ~MeDGD~Idv~ 95 (126)
+++||++|.|.
T Consensus 71 gv~~gstLy~k 81 (308)
T PLN02560 71 GLGDGGTVVFK 81 (308)
T ss_pred CCCCCceEEEE
Confidence 99999998876
No 41
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=97.58 E-value=0.00058 Score=46.04 Aligned_cols=71 Identities=14% Similarity=0.295 Sum_probs=57.2
Q ss_pred EEEEEEeccC--CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC----Ceec----CCCCCcccc
Q psy4523 15 INLKVLGQDN--NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD----GQAI----NEQDTPSTL 84 (126)
Q Consensus 15 I~Ikv~~~~g--~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd----G~rL----~~~~TP~dL 84 (126)
|.|.|.+... ...+.++.++.++..|+...... .|++++.+++.+. |..+ .++.|..++
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~-----------~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y 70 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKL-----------TGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSY 70 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHH-----------HTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHH
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHH-----------hCCCcccEEEEEEecCCCccccccCCCccEeecC
Confidence 6777777554 47889999999999999999999 9999998888774 3332 467899999
Q ss_pred CCCCCCEEEEEe
Q psy4523 85 EMEEGDTIEIYQ 96 (126)
Q Consensus 85 ~MeDGD~Idv~~ 96 (126)
+++||++|.|.-
T Consensus 71 ~~~dg~~i~V~D 82 (87)
T PF14560_consen 71 GIKDGMRIHVVD 82 (87)
T ss_dssp T-STTEEEEEEE
T ss_pred CCCCCCEEEEEe
Confidence 999999999874
No 42
>KOG0011|consensus
Probab=97.50 E-value=0.00057 Score=57.47 Aligned_cols=74 Identities=9% Similarity=0.202 Sum_probs=67.2
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhcc--CccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN--LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~g--l~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id 93 (126)
.|.|+...+..+.+.+++++++..+|...... .| .+....+++|+|+-|.++.|..++++.+++.|-
T Consensus 2 ~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~-----------~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiV 70 (340)
T KOG0011|consen 2 KLTVKTLKQQTFTIEVKPEDTVVEVKKKIETE-----------KGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIV 70 (340)
T ss_pred eeEeeeccCceeEeecCcchhHHHHHHHHHhc-----------cCCCCchhhheeeecceeccCCcchhhhccccCceEE
Confidence 45556666788899999999999999999998 78 778899999999999999999999999999999
Q ss_pred EEeeecC
Q psy4523 94 IYQQQTG 100 (126)
Q Consensus 94 v~~~Q~G 100 (126)
|++.+..
T Consensus 71 vMlsK~k 77 (340)
T KOG0011|consen 71 VMLSKDK 77 (340)
T ss_pred EEEecCc
Confidence 9999887
No 43
>KOG0004|consensus
Probab=97.36 E-value=0.00026 Score=53.89 Aligned_cols=79 Identities=13% Similarity=0.302 Sum_probs=72.5
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
.|.|+...|..+++.+.+..++..++....+. .|+++++.|++|-|++|.+.-|..|+++.-..+|.++
T Consensus 2 ~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~-----------egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~ 70 (156)
T KOG0004|consen 2 QIFVKTLTGKTITLEVEANDTIDNVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (156)
T ss_pred ccchhhccccceeeeecccccHHHHHHhhhcc-----------cCCCchhhhhhhhhcccccCCccccccccccceEEEE
Confidence 35666667888999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eeecCCCcCC
Q psy4523 96 QQQTGGFKQT 105 (126)
Q Consensus 96 ~~Q~GG~~~~ 105 (126)
+...||..-+
T Consensus 71 l~l~Gg~kkr 80 (156)
T KOG0004|consen 71 LRLRGGAKKR 80 (156)
T ss_pred EEecCCcccc
Confidence 9999998754
No 44
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.28 E-value=0.0012 Score=43.60 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=45.1
Q ss_pred cCCCcHHHHHHHHHHHhhhhhhhhhhhcc-CccceeEEE--ECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 32 KKGTPLRKLMNAYCERCVSILSVLITLQN-LSMSTVRFR--FDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 32 k~tt~l~kL~~~y~~~~~~~~~~~~~~~g-l~~~~~rF~--fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
.++.++..|++++++. .+ .+++.+|+. +.|..|.++.|..++++.||.+|.|.
T Consensus 20 ~~~aTV~dlk~~i~~~-----------~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyvK 75 (77)
T cd01801 20 SGDATIADLKKLIAKS-----------SPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYVR 75 (77)
T ss_pred CCCccHHHHHHHHHHH-----------cCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEEe
Confidence 4778999999999988 54 467777775 78999999999999999999998763
No 45
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.08 E-value=0.0025 Score=41.83 Aligned_cols=63 Identities=11% Similarity=0.237 Sum_probs=44.7
Q ss_pred EeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523 20 LGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 20 ~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id 93 (126)
.+.+++...+++.++++|..+.+.-|++ .|++++...+.|+++.|+.+.+---.++-+|..++
T Consensus 2 i~~~~rr~~vkvtp~~~l~~VL~eac~k-----------~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLe 64 (65)
T PF11470_consen 2 ICYNFRRFKVKVTPNTTLNQVLEEACKK-----------FGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLE 64 (65)
T ss_dssp E-TTS-EEEE---TTSBHHHHHHHHHHH-----------TT--GGG-EEEETTEEESSS-BHHHH---SS-EEE
T ss_pred CccCCcEEEEEECCCCCHHHHHHHHHHH-----------cCCCccceEEEECCEEeccccceeecCCCCCCEEe
Confidence 4567888999999999999999999999 99999999999999999988887777777776654
No 46
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.07 E-value=0.0023 Score=42.58 Aligned_cols=73 Identities=12% Similarity=0.186 Sum_probs=50.8
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccc---eeEEE-ECCeecCCCCCccccCCCCC
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMS---TVRFR-FDGQAINEQDTPSTLEMEEG 89 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~---~~rF~-fdG~rL~~~~TP~dL~MeDG 89 (126)
.|+|.|...+|..+-+.+-.+.|+..|+....+.+.. .+.... ..+|. -+|..|++++|.+++++.||
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~--------~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dG 73 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGL--------PGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDG 73 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS-----------S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCC--------ccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCC
Confidence 5777887755688899999999999999999998320 111222 35666 68999999999999999999
Q ss_pred CEEEE
Q psy4523 90 DTIEI 94 (126)
Q Consensus 90 D~Idv 94 (126)
|++..
T Consensus 74 d~L~L 78 (79)
T PF08817_consen 74 DVLVL 78 (79)
T ss_dssp -EEEE
T ss_pred CEEEe
Confidence 98764
No 47
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.97 E-value=0.017 Score=38.06 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=56.6
Q ss_pred CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccce-eEEE--ECCeecCCCC--CccccC
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMST-VRFR--FDGQAINEQD--TPSTLE 85 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~-~rF~--fdG~rL~~~~--TP~dL~ 85 (126)
+.+.++|+|+-.||..+.-+..++++++.|++..... ....... +.|. |--+.+..++ |.++++
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~-----------~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~ 71 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQ-----------LFSPEESDFELITAFPRRELTDEDSKTLEEAG 71 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHH-----------HHCTTTSSEEEEESSSTEECCSTTTSBTCCCT
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHh-----------cCCCCCccEEEEeCCCCcCCCccccccHHHhc
Confidence 4557888888899999999999999999999877666 3333333 6665 4567777665 999999
Q ss_pred CCCCCEEEE
Q psy4523 86 MEEGDTIEI 94 (126)
Q Consensus 86 MeDGD~Idv 94 (126)
+-.+..|.|
T Consensus 72 l~p~~~l~v 80 (82)
T PF00789_consen 72 LLPSATLIV 80 (82)
T ss_dssp TSSCEEEEE
T ss_pred CCCCeEEEE
Confidence 988887765
No 48
>KOG0001|consensus
Probab=96.85 E-value=0.032 Score=33.95 Aligned_cols=70 Identities=13% Similarity=0.319 Sum_probs=62.5
Q ss_pred EEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEee
Q psy4523 18 KVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 18 kv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~ 97 (126)
.+....|....+.+.+..++..++...+.. .|++.+..++.|.|+.+.++.|-.++++..+..+.+...
T Consensus 3 ~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~-----------~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~ 71 (75)
T KOG0001|consen 3 FVKTLDGKTITLEVSPSDTIEVVKAKIRDK-----------EGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLS 71 (75)
T ss_pred EEEecCCCEEEEEecCCCHHHHHHHHHHhh-----------cCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEe
Confidence 344567888999999999999998899999 899999999999999999999999999999999998765
Q ss_pred e
Q psy4523 98 Q 98 (126)
Q Consensus 98 Q 98 (126)
.
T Consensus 72 ~ 72 (75)
T KOG0001|consen 72 L 72 (75)
T ss_pred c
Confidence 4
No 49
>KOG4248|consensus
Probab=96.77 E-value=0.0029 Score=59.79 Aligned_cols=71 Identities=14% Similarity=0.313 Sum_probs=66.7
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
+|+|++.|.++.+|.|..-.+++.+++..++. .++.....|++|.|+.|.+++|..++++ ||-+|++.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~-----------~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlv 71 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRAS-----------VNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLV 71 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHh-----------cccccccceeeecceeeccchhhhhccC-CCeEEEee
Confidence 47888888898999999999999999999999 9999999999999999999999999999 99999999
Q ss_pred eee
Q psy4523 96 QQQ 98 (126)
Q Consensus 96 ~~Q 98 (126)
-+.
T Consensus 72 erp 74 (1143)
T KOG4248|consen 72 ERP 74 (1143)
T ss_pred ccC
Confidence 773
No 50
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=96.74 E-value=0.0062 Score=43.68 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=56.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCC-CCCccccCCCCCCEEEEEee
Q psy4523 25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINE-QDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~-~~TP~dL~MeDGD~Idv~~~ 97 (126)
.++.+.|.+++++..|+....+. .++++.+.++.|||+-|.+ ..|..++|+-.|.+|.+.++
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~-----------f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHA-----------FSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHH-----------hcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 46789999999999999999999 9999999999999998886 48999999999999998875
No 51
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=95.77 E-value=0.073 Score=34.47 Aligned_cols=64 Identities=20% Similarity=0.421 Sum_probs=47.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 26 VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 26 ~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+..+.+....++..|.+...+++.. ..+.....+.+..||+.+. .+.-++|||+|.++.--.||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~-------~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPG-------LLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCch-------HHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 4567777789999999999888210 0112345788888999998 34569999999999887776
No 52
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.62 E-value=0.18 Score=34.34 Aligned_cols=71 Identities=6% Similarity=0.027 Sum_probs=54.3
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC--eecC--------CCCCcc
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG--QAIN--------EQDTPS 82 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG--~rL~--------~~~TP~ 82 (126)
..++|.++-.+|..+.-+...+++++.|++....+ +..+..+.+..+= +.+. .+.|.+
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~------------~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~ 70 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL------------KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLL 70 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC------------CCCCCcEEEecCCCCccccccccccCcCCCCHH
Confidence 46777777799999999999999999999988543 3445677777654 5564 367999
Q ss_pred ccCCCCCCEEEEE
Q psy4523 83 TLEMEEGDTIEIY 95 (126)
Q Consensus 83 dL~MeDGD~Idv~ 95 (126)
++||....++-|.
T Consensus 71 eaGL~~s~~L~V~ 83 (85)
T cd01774 71 EAGLSNSEVLFVQ 83 (85)
T ss_pred HcCCCCccEEEEe
Confidence 9999988766553
No 53
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=95.39 E-value=0.25 Score=32.16 Aligned_cols=67 Identities=18% Similarity=0.377 Sum_probs=48.7
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id 93 (126)
.|+|++-+. ..+..+.+...+++..|.+ . .+++...+....||+.+. .+--+.|||.|+
T Consensus 4 mm~v~vng~-~~~~~~~~~~~~tv~~ll~----~-----------l~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Ve 62 (70)
T PRK08364 4 MIRVKVIGR-GIEKEIEWRKGMKVADILR----A-----------VGFNTESAIAKVNGKVAL-----EDDPVKDGDYVE 62 (70)
T ss_pred EEEEEEecc-ccceEEEcCCCCcHHHHHH----H-----------cCCCCccEEEEECCEECC-----CCcCcCCCCEEE
Confidence 377887553 2355677788888887764 3 456667789999999994 456699999999
Q ss_pred EEeeecCC
Q psy4523 94 IYQQQTGG 101 (126)
Q Consensus 94 v~~~Q~GG 101 (126)
++.---||
T Consensus 63 ii~~V~GG 70 (70)
T PRK08364 63 VIPVVSGG 70 (70)
T ss_pred EEccccCC
Confidence 98764444
No 54
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=94.97 E-value=0.34 Score=32.21 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=47.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
.+..+.+. .++++.|++..+++......-.-...|-..+.+++..||+.+..++. ..++|||+|.++.--.||
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 34566665 88999999999988311000000001111245889999999986542 569999999998876665
No 55
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=94.88 E-value=0.42 Score=31.49 Aligned_cols=71 Identities=10% Similarity=0.108 Sum_probs=51.1
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeecCC---CCCccccCCC
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAINE---QDTPSTLEME 87 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL~~---~~TP~dL~Me 87 (126)
...+|.|+-.+|..+..+...+++++.|++..... .+.....+.|.- -.+.+.+ +.|..++++-
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~-----------~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~ 71 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAA-----------LTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALL 71 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHc-----------ccCCCCCEEEEeCCCCcCCccccccCCHHHCCCC
Confidence 45677777789999999999999999999988555 444444555543 4555553 3688888887
Q ss_pred CCCEEEE
Q psy4523 88 EGDTIEI 94 (126)
Q Consensus 88 DGD~Idv 94 (126)
...++-|
T Consensus 72 p~~~l~v 78 (80)
T smart00166 72 PSSTLVL 78 (80)
T ss_pred CceEEEE
Confidence 7766554
No 56
>KOG0006|consensus
Probab=94.80 E-value=0.1 Score=44.55 Aligned_cols=60 Identities=15% Similarity=0.324 Sum_probs=51.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
..+.+.|+.++.+..|++..+++ .|+++++++.+|-|+.|+.+-|....+|.--...+++
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~-----------~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKR-----------QGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHh-----------hCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 33678899999999999999999 9999999999999999999999996666555555554
No 57
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=94.59 E-value=0.52 Score=30.77 Aligned_cols=67 Identities=4% Similarity=-0.009 Sum_probs=48.1
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeecC---CCCCccccCCCC
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAIN---EQDTPSTLEMEE 88 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL~---~~~TP~dL~MeD 88 (126)
..+|.|+-.+|..+..+...+++++.|++..... ... ...+.|.- -.+.+. .+.|.+++|+.+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~-----------~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~ 69 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESN-----------GPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN 69 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHc-----------CCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc
Confidence 4567777789999999999999999999877655 222 44555553 355554 478999999985
Q ss_pred CCEE
Q psy4523 89 GDTI 92 (126)
Q Consensus 89 GD~I 92 (126)
.-++
T Consensus 70 s~~~ 73 (77)
T cd01767 70 EVVF 73 (77)
T ss_pred ceEE
Confidence 4433
No 58
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.22 E-value=0.59 Score=31.96 Aligned_cols=75 Identities=15% Similarity=0.290 Sum_probs=56.9
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id 93 (126)
.|++-+...+|.+.-+++.---|.+++++-..+-- +... ...+-..+|..-.++-+.+++-..+.++-|||+.+
T Consensus 6 kVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~-kis~-----~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Le 79 (81)
T COG5417 6 KVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESL-KISI-----FDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILE 79 (81)
T ss_pred EEEEEeEecCCceEEEeccccchHHHHHHHHHHHh-hccc-----cccCCCEEEEeccceEecCCceEEeccccCCCEEE
Confidence 35566667778888899999999999999776651 1000 22233467888789999999999999999999876
Q ss_pred E
Q psy4523 94 I 94 (126)
Q Consensus 94 v 94 (126)
.
T Consensus 80 i 80 (81)
T COG5417 80 I 80 (81)
T ss_pred e
Confidence 4
No 59
>PRK06437 hypothetical protein; Provisional
Probab=94.16 E-value=0.54 Score=30.47 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=44.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 24 NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 24 g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+.+..+.+...+++..|.+ + .|+++..+....||..+. .+.-+.|||.|+++.--.||
T Consensus 10 ~~~~~~~i~~~~tv~dLL~----~-----------Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 10 HINKTIEIDHELTVNDIIK----D-----------LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CcceEEEcCCCCcHHHHHH----H-----------cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 4556777888888877764 4 667788888889999996 56678999999998764444
No 60
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.51 E-value=1.1 Score=29.96 Aligned_cols=68 Identities=6% Similarity=0.073 Sum_probs=49.2
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC-ccceeEEE--ECCeecCC-CCCccccCCCCC
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL-SMSTVRFR--FDGQAINE-QDTPSTLEMEEG 89 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl-~~~~~rF~--fdG~rL~~-~~TP~dL~MeDG 89 (126)
..+|.|+-.||..+..++..+++++.|++..... .+. ....+.+. |=.+.+.+ +.|.+|+|+.+.
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~-----------~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNA-----------RPEFAARPFTLMTAFPVKELSDESLTLKEANLLNA 72 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHh-----------CCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCc
Confidence 4566666689999999999999999999877765 322 23445554 55666664 689999999875
Q ss_pred CEE
Q psy4523 90 DTI 92 (126)
Q Consensus 90 D~I 92 (126)
-+|
T Consensus 73 ~v~ 75 (79)
T cd01770 73 VIV 75 (79)
T ss_pred EEE
Confidence 544
No 61
>PRK07440 hypothetical protein; Provisional
Probab=93.47 E-value=0.99 Score=29.51 Aligned_cols=68 Identities=24% Similarity=0.409 Sum_probs=49.5
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I 92 (126)
+.|+|.| +|+. +.+....++..|.+ . .++++..+-.-.||+-|..+ .-++.-+.|||.|
T Consensus 3 ~~m~i~v---NG~~--~~~~~~~tl~~lL~----~-----------l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~I 61 (70)
T PRK07440 3 NPITLQV---NGET--RTCSSGTSLPDLLQ----Q-----------LGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRL 61 (70)
T ss_pred CceEEEE---CCEE--EEcCCCCCHHHHHH----H-----------cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEE
Confidence 4688888 4553 55566777777664 5 77888899999999888753 3345569999999
Q ss_pred EEEeeecCC
Q psy4523 93 EIYQQQTGG 101 (126)
Q Consensus 93 dv~~~Q~GG 101 (126)
+++.---||
T Consensus 62 EIv~~v~GG 70 (70)
T PRK07440 62 EIVTIVGGG 70 (70)
T ss_pred EEEEEecCC
Confidence 998764444
No 62
>KOG3493|consensus
Probab=93.36 E-value=0.048 Score=36.42 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=60.2
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
|.+.+.+.=|+.+.++..++++++.+++..+.+ .|-.++.+++.=-+.-+.+.-|.++++|.||--.+.
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQ-----------tGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQ-----------TGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHh-----------hCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 455666666899999999999999999999999 888888888875667778889999999999987776
Q ss_pred Ee
Q psy4523 95 YQ 96 (126)
Q Consensus 95 ~~ 96 (126)
+.
T Consensus 71 yy 72 (73)
T KOG3493|consen 71 YY 72 (73)
T ss_pred ee
Confidence 53
No 63
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=93.23 E-value=0.49 Score=31.14 Aligned_cols=62 Identities=13% Similarity=0.315 Sum_probs=44.5
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCc--cceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS--MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~--~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
.+..+.+...+++..|.+....+. .++. ...+.+..||+.+. .+.-++|||+|.++.--.||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~----------p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKF----------PSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHC----------hhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCCC
Confidence 456778888899999999888771 1221 13456888998864 44468999999998775555
No 64
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=92.83 E-value=1 Score=29.53 Aligned_cols=60 Identities=17% Similarity=0.295 Sum_probs=46.1
Q ss_pred EEEEEecCC-CcHHHHHHHHHHHhhhhhhhhhhhcc-C--ccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 26 VVQFKIKKG-TPLRKLMNAYCERCVSILSVLITLQN-L--SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 26 ~v~fkIk~t-t~l~kL~~~y~~~~~~~~~~~~~~~g-l--~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
...+.+... +++..|.+..+++ .+ + ....+++..||+.+.. +.-++|||+|.++.--.||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~-----------~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKE-----------GPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHh-----------CchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 346777766 8999999999998 32 2 2356788889998884 5689999999998776665
No 65
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=92.71 E-value=1.1 Score=28.46 Aligned_cols=64 Identities=23% Similarity=0.398 Sum_probs=42.4
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
+|.+ +|+.+.+ . .+++..|.+. .+++.+.+..-.||+-+.. ..-.+.-+.|||.|+++
T Consensus 2 ~i~~---Ng~~~~~--~-~~tl~~Ll~~---------------l~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv 59 (65)
T PRK06488 2 KLFV---NGETLQT--E-ATTLALLLAE---------------LDYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEIL 59 (65)
T ss_pred EEEE---CCeEEEc--C-cCcHHHHHHH---------------cCCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEE
Confidence 4555 5665555 3 3466666643 4455667888999988874 23334569999999998
Q ss_pred eeecCC
Q psy4523 96 QQQTGG 101 (126)
Q Consensus 96 ~~Q~GG 101 (126)
.--.||
T Consensus 60 ~~V~GG 65 (65)
T PRK06488 60 SPMQGG 65 (65)
T ss_pred EeccCC
Confidence 765554
No 66
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=92.28 E-value=1.5 Score=27.64 Aligned_cols=65 Identities=22% Similarity=0.466 Sum_probs=43.7
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
+|+| +|+. +.+....++..|.+ . .|++...+..-.||.-+...+ -.+--++|||.|+++
T Consensus 2 ~i~v---NG~~--~~~~~~~tl~~lL~----~-----------l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~ 60 (66)
T PRK05659 2 NIQL---NGEP--RELPDGESVAALLA----R-----------EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIV 60 (66)
T ss_pred EEEE---CCeE--EEcCCCCCHHHHHH----h-----------cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEE
Confidence 4555 4553 45556677766654 4 567777888889998887554 344458999999998
Q ss_pred eeecCC
Q psy4523 96 QQQTGG 101 (126)
Q Consensus 96 ~~Q~GG 101 (126)
.---||
T Consensus 61 ~~vgGG 66 (66)
T PRK05659 61 HALGGG 66 (66)
T ss_pred EEecCC
Confidence 764443
No 67
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=92.07 E-value=0.57 Score=29.87 Aligned_cols=65 Identities=22% Similarity=0.434 Sum_probs=50.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 26 VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 26 ~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+....+....+++.|.+..+.+... .. ....+.+..||+.+.. + -.+.-+.|||+|.++.--.||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~--------~~-~~~~~~v~vN~~~v~~-~-~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPE--------LA-LRDRVAVAVNGEIVPD-D-GLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGG--------GH-TTTTEEEEETTEEEGG-G-TTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccc--------cc-cCccEEEEECCEEcCC-c-cCCcCcCCCCEEEEECCCCCC
Confidence 5678888999999999999988210 00 3478999999999998 3 666778999999998776665
No 68
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=91.97 E-value=1.1 Score=28.08 Aligned_cols=60 Identities=15% Similarity=0.408 Sum_probs=38.8
Q ss_pred cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+|+ .+.+...+++..|.+.+ ++. ..+.+..||..+...+ -.+--+.|||+|+++.---||
T Consensus 6 Ng~--~~~~~~~~tl~~ll~~l---------------~~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 6 NQQ--TLSLPDGATVADALAAY---------------GAR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CCE--EEECCCCCcHHHHHHhh---------------CCC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeeccCC
Confidence 454 34555667777776543 232 3577889998886432 333449999999998765554
No 69
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.75 E-value=2.9 Score=28.56 Aligned_cols=71 Identities=10% Similarity=0.059 Sum_probs=50.6
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--Ceec---CCCCCccccCCC
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQAI---NEQDTPSTLEME 87 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL---~~~~TP~dL~Me 87 (126)
+.-.|.|+-.+|..+.-+...+++|+.|.+..... |..+..+.++-+ =+.+ ..+.|..++||.
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~------------g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~ 71 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQSK------------GYPNERFELLTNFPRRKLSHLDYDITLQEAGLC 71 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc------------CCCCCCEEEecCCCCcccCCcccCCCHHHcCCC
Confidence 34556666689999999999999999998854443 445666666643 2222 234799999999
Q ss_pred CCCEEEEE
Q psy4523 88 EGDTIEIY 95 (126)
Q Consensus 88 DGD~Idv~ 95 (126)
.-+++-|-
T Consensus 72 P~~~LfVq 79 (82)
T cd01773 72 PQETVFVQ 79 (82)
T ss_pred CCcEEEEe
Confidence 98887664
No 70
>smart00455 RBD Raf-like Ras-binding domain.
Probab=91.57 E-value=1.1 Score=29.33 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=38.3
Q ss_pred EEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC
Q psy4523 18 KVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72 (126)
Q Consensus 18 kv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG 72 (126)
+|.-.+|+...++++++.++..+...-|++ +|+.+....+.+-|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~k-----------r~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKK-----------RGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHH-----------cCCCHHHEEEEEcC
Confidence 444578999999999999999999999999 99999887777754
No 71
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.91 E-value=3.3 Score=27.39 Aligned_cols=69 Identities=7% Similarity=0.021 Sum_probs=49.8
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeecCC---CCCccccCCCC
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAINE---QDTPSTLEMEE 88 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL~~---~~TP~dL~MeD 88 (126)
...|.|+-.+|..+.-+...++++..|.+..... .+. ...+.|.- =-+.+.+ +.|..++|+-.
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~-----------~~~-~~~f~L~t~fPrk~~~~~d~~~TL~elgL~P 71 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELN-----------TGN-GGPFTLMTPFPRKVFTEDDMEKPLQELGLVP 71 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHc-----------CCC-CCCEEEEeCCCCeECCcccccCCHHHCCCCC
Confidence 3556666689999999999999999999988766 332 24455543 3555643 47999999988
Q ss_pred CCEEEE
Q psy4523 89 GDTIEI 94 (126)
Q Consensus 89 GD~Idv 94 (126)
..++-|
T Consensus 72 sa~L~v 77 (79)
T cd01772 72 SAVLIV 77 (79)
T ss_pred ceEEEE
Confidence 776654
No 72
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=90.49 E-value=1.1 Score=30.86 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=38.2
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc---ceeEEEE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM---STVRFRF 70 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~---~~~rF~f 70 (126)
..|+++..|+.+.|++.++.-+..|+...+++ .|.+. +.+.+.|
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~R-----------l~~d~~~~~~~~L~Y 48 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQR-----------LGDDDFETHLYALSY 48 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHH-----------hCCccccCCcccEEE
Confidence 36788888999999999999999999999999 77775 5677777
No 73
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=90.45 E-value=2.1 Score=27.66 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=35.8
Q ss_pred cEEEEEEeccCCEEE-EEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE
Q psy4523 14 HINLKVLGQDNNVVQ-FKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF 70 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~-fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f 70 (126)
+|.||+.-. +.... +.+.+...+..|....+++ .+.....+++.|
T Consensus 1 t~~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~-----------~~~~~~~~~l~Y 46 (84)
T PF00564_consen 1 TVRVKVRYG-GDIRRIISLPSDVSFDDLRSKIREK-----------FGLLDEDFQLKY 46 (84)
T ss_dssp SEEEEEEET-TEEEEEEEECSTSHHHHHHHHHHHH-----------HTTSTSSEEEEE
T ss_pred CEEEEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHH-----------hCCCCccEEEEe
Confidence 366777654 33344 8999999999999999999 777778888888
No 74
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=90.39 E-value=1.1 Score=35.94 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=51.3
Q ss_pred CCCCcEEEEEEecc--CCEE----EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC------eecCC
Q psy4523 10 STDEHINLKVLGQD--NNVV----QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG------QAINE 77 (126)
Q Consensus 10 ~~~~~I~Ikv~~~~--g~~v----~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG------~rL~~ 77 (126)
.....|-|.++.-| ...+ ++-|.++.++..|....+++ .|++.++=-.+|.- ..|..
T Consensus 64 ~~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~-----------~g~p~~t~l~lyEEi~~~~ie~i~~ 132 (249)
T PF12436_consen 64 DPSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINER-----------AGLPPDTPLLLYEEIKPNMIEPIDP 132 (249)
T ss_dssp -TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHH-----------HT--TT--EEEEEEEETTEEEE--S
T ss_pred CCCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHH-----------cCCCCCCceEEEEEeccceeeEcCC
Confidence 34556777776544 4554 58999999999999999999 88987654444432 46789
Q ss_pred CCCccccCCCCCCEEEEEeeec
Q psy4523 78 QDTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.|.+..++.|||+|-+.....
T Consensus 133 ~~t~~~~el~~GdIi~fQ~~~~ 154 (249)
T PF12436_consen 133 NQTFEKAELQDGDIICFQRAPS 154 (249)
T ss_dssp SSBHHHTT--TTEEEEEEE--G
T ss_pred CCchhhcccCCCCEEEEEeccc
Confidence 9999999999999777666543
No 75
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=90.17 E-value=3.2 Score=26.40 Aligned_cols=65 Identities=17% Similarity=0.332 Sum_probs=43.5
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
+|.| +|+. +.+....++..|.+ . .+.....+.+-.||+-|.. ..-++.-+.+||.|+++
T Consensus 2 ~i~v---Ng~~--~~~~~~~tl~~ll~----~-----------l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii 60 (66)
T PRK08053 2 QILF---NDQP--MQCAAGQTVHELLE----Q-----------LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLF 60 (66)
T ss_pred EEEE---CCeE--EEcCCCCCHHHHHH----H-----------cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEE
Confidence 4454 4554 44456667777664 3 4455667899999988864 33444569999999998
Q ss_pred eeecCC
Q psy4523 96 QQQTGG 101 (126)
Q Consensus 96 ~~Q~GG 101 (126)
.---||
T Consensus 61 ~~v~GG 66 (66)
T PRK08053 61 QVIAGG 66 (66)
T ss_pred EEccCC
Confidence 765554
No 76
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=90.03 E-value=2.8 Score=28.68 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=49.5
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC---Ce--ecCCCCCccccCCCCC
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD---GQ--AINEQDTPSTLEMEEG 89 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd---G~--rL~~~~TP~dL~MeDG 89 (126)
|.|.|.--.+....++|++-+|+.|+++..... .|.+- ..|+.|. |+ .|+...|.+++|+=..
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~-----------~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~ 68 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRS-----------RNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSK 68 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHh-----------hCccc-ceEEEeecCCcccccccccccHhhhcceec
Confidence 345555433466899999999999999999988 77744 7778773 43 4678889999887655
Q ss_pred CEEEE
Q psy4523 90 DTIEI 94 (126)
Q Consensus 90 D~Idv 94 (126)
-.|-+
T Consensus 69 ~~i~l 73 (80)
T cd01811 69 TNICL 73 (80)
T ss_pred cEEEE
Confidence 44433
No 77
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=89.96 E-value=2.9 Score=27.75 Aligned_cols=64 Identities=11% Similarity=0.276 Sum_probs=45.1
Q ss_pred EEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CC--eecCCCCCccccCCCCCCEEE
Q psy4523 18 KVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DG--QAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 18 kv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG--~rL~~~~TP~dL~MeDGD~Id 93 (126)
+|.-.||......|++..+++.+...-|++ +|+.+...-+.+ ++ ..+..++-. ..-.|++|.
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~k-----------r~l~~~~~~v~~~~~~~~~~~~~~~d~---~~L~~~El~ 68 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKK-----------RGLNPECCDVFLLGLDEKKPLDLDTDS---SSLAGEELE 68 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHH-----------cCCCHHHEEEEEecCCCcCCcCchhhh---hhhcCCEEE
Confidence 444578999999999999999999999999 999887644444 34 333333222 333567676
Q ss_pred EE
Q psy4523 94 IY 95 (126)
Q Consensus 94 v~ 95 (126)
|.
T Consensus 69 Ve 70 (72)
T cd01760 69 VE 70 (72)
T ss_pred EE
Confidence 64
No 78
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=89.94 E-value=3.8 Score=27.89 Aligned_cols=69 Identities=16% Similarity=0.354 Sum_probs=48.4
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT 91 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~ 91 (126)
...|+|.| +|+. +.+....++..|.+ . .+++...+-.-.||.-|.. ..-++.-+.+||.
T Consensus 16 ~~~m~I~V---NG~~--~~~~~~~tl~~LL~----~-----------l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~ 74 (84)
T PRK06083 16 MVLITISI---NDQS--IQVDISSSLAQIIA----Q-----------LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDA 74 (84)
T ss_pred CceEEEEE---CCeE--EEcCCCCcHHHHHH----H-----------cCCCCceEEEEECCEEeCH-HHcCcccCCCCCE
Confidence 34677776 5654 44456666766665 4 5577788888999998864 4455667999999
Q ss_pred EEEEeeecCC
Q psy4523 92 IEIYQQQTGG 101 (126)
Q Consensus 92 Idv~~~Q~GG 101 (126)
|+++----||
T Consensus 75 IEIv~~VgGG 84 (84)
T PRK06083 75 ISLFQAIAGG 84 (84)
T ss_pred EEEEEEecCC
Confidence 9998764444
No 79
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=89.80 E-value=2.5 Score=26.97 Aligned_cols=60 Identities=15% Similarity=0.320 Sum_probs=41.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+|.. +.+....++..|.+ . .+++...+-.-+||.-|...+=. +. +.|||.|+++.---||
T Consensus 6 NG~~--~~~~~~~tl~~ll~----~-----------l~~~~~~vav~~N~~iv~r~~~~-~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 6 NEEQ--VEVDEQTTVAALLD----S-----------LGFPEKGIAVAVDWSVLPRSDWA-TK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CCEE--EEcCCCCcHHHHHH----H-----------cCCCCCcEEEEECCcCcChhHhh-hh-cCCCCEEEEEeeccCC
Confidence 4543 44455666666654 4 67788899999999977754333 33 8999999998764443
No 80
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=89.40 E-value=3.4 Score=31.76 Aligned_cols=78 Identities=21% Similarity=0.274 Sum_probs=55.6
Q ss_pred EEEEEEeccC----CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccce-eEEEEC-CeecCC-CCC-ccccCC
Q psy4523 15 INLKVLGQDN----NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMST-VRFRFD-GQAINE-QDT-PSTLEM 86 (126)
Q Consensus 15 I~Ikv~~~~g----~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~-~rF~fd-G~rL~~-~~T-P~dL~M 86 (126)
|+|-|.+-+| ..+.|.+..++++..|++...++ .+.+... +.|.+. |..|.. +++ ..++.-
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~-----------~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~ 69 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSER-----------LPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLS 69 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhh-----------cCCCccceeEEEEeCCCeeCCCccccHHhhcc
Confidence 5788888888 57889999999999999999999 7776655 556653 445533 333 344444
Q ss_pred CCCC----EEEEEeeecCCCc
Q psy4523 87 EEGD----TIEIYQQQTGGFK 103 (126)
Q Consensus 87 eDGD----~Idv~~~Q~GG~~ 103 (126)
.+.| .+.+.....||-+
T Consensus 70 ~~~~~~~~~l~l~~rl~GGKG 90 (162)
T PF13019_consen 70 SSQDSDFITLRLSLRLRGGKG 90 (162)
T ss_pred CcCCCCceEEEEEEeccCCCc
Confidence 4444 5777788888854
No 81
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=89.28 E-value=0.63 Score=31.85 Aligned_cols=76 Identities=13% Similarity=0.296 Sum_probs=52.8
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
..|||..+. .+-++|.+.-++..|.+..+++ .+++.+.+++.|.- ..+.+-..+.|.|.=+|
T Consensus 3 ~vvKV~f~~--tIaIrvp~~~~y~~L~~ki~~k-----------Lkl~~e~i~LsYkd-----e~s~~~v~l~d~dle~a 64 (80)
T cd06406 3 YVVKVHFKY--TVAIQVARGLSYATLLQKISSK-----------LELPAEHITLSYKS-----EASGEDVILSDTNMEDV 64 (80)
T ss_pred eEEEEEEEE--EEEEEcCCCCCHHHHHHHHHHH-----------hCCCchhcEEEecc-----CCCCCccCcChHHHHHH
Confidence 456776653 7889999999999999999999 88888888888853 44555555556664334
Q ss_pred EeeecCCCcCCCceeeecc
Q psy4523 95 YQQQTGGFKQTPQLQIWHT 113 (126)
Q Consensus 95 ~~~Q~GG~~~~~~~~~~~~ 113 (126)
+ .|..++. +-||-+
T Consensus 65 w-s~~~~~~----lTLwC~ 78 (80)
T cd06406 65 W-SQAKDGC----LTLWCT 78 (80)
T ss_pred H-HhhcCCe----EEEEEe
Confidence 3 3444333 337754
No 82
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=88.76 E-value=3 Score=26.29 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=39.6
Q ss_pred EEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 29 FKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 29 fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+.+....++..|.+ . .++++..+.+..||+-+..+ ...+..+.|||.|+++.---||
T Consensus 8 ~~~~~~~tv~~ll~----~-----------l~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 8 VEVEDGLTLAALLE----S-----------LGLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred EEcCCCCcHHHHHH----H-----------cCCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 44455666666655 3 55667888999999988643 3344579999999998764444
No 83
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=88.55 E-value=5.6 Score=26.64 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=50.9
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--Ceec---CCCCCccccCCC
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQAI---NEQDTPSTLEME 87 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL---~~~~TP~dL~Me 87 (126)
+.++|.++-.+|..+.-+...+++|+.|++..... |.+...+++.-. =+.+ ..+.|..++||-
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~------------~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~ 70 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK------------GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLY 70 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc------------CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCC
Confidence 46778888899999999999999999999877544 444556666432 2333 335789999988
Q ss_pred CCCEEEE
Q psy4523 88 EGDTIEI 94 (126)
Q Consensus 88 DGD~Idv 94 (126)
...++-|
T Consensus 71 p~~~L~V 77 (80)
T cd01771 71 PQETLIL 77 (80)
T ss_pred CCcEEEE
Confidence 8777655
No 84
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=87.30 E-value=3.3 Score=26.74 Aligned_cols=45 Identities=9% Similarity=0.279 Sum_probs=36.3
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd 71 (126)
|+||+.. .+....|.+.+..++..|....+++ .++....+++.|.
T Consensus 2 ~~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~-----------~~~~~~~~~l~Y~ 46 (81)
T smart00666 2 VDVKLRY-GGETRRLSVPRDISFEDLRSKVAKR-----------FGLDNQSFTLKYQ 46 (81)
T ss_pred ccEEEEE-CCEEEEEEECCCCCHHHHHHHHHHH-----------hCCCCCCeEEEEE
Confidence 5677765 4555679999999999999999999 7776677888874
No 85
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=86.80 E-value=2.4 Score=29.67 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=41.6
Q ss_pred cEEEEEEeccCCEEEEEec--CCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCC
Q psy4523 14 HINLKVLGQDNNVVQFKIK--KGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDT 80 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk--~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~T 80 (126)
.|+|++.+. -.-+.+.|. .+++...|+....++.. ...+...+||+|+|+.|.+...
T Consensus 2 ~l~IRFs~s-ipDl~L~I~~~~~~Tv~~LK~lIR~~~p---------~~~s~~rLRlI~~Gr~L~d~t~ 60 (97)
T PF10302_consen 2 YLTIRFSDS-IPDLPLDIPSPNTTTVAWLKQLIRERLP---------PEPSRRRLRLIYAGRLLNDHTD 60 (97)
T ss_pred eEEEEECCC-CCCceeecCCCCcccHHHHHHHHHhhcC---------CCCccccEEeeecCcccCccch
Confidence 577777652 233667777 88999999999998811 2345668999999999986543
No 86
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=86.38 E-value=6.7 Score=25.20 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=32.1
Q ss_pred ccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 59 QNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 59 ~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
.++++..+-.-.||.-|..++ -++.-+.|||.|++..---||
T Consensus 26 l~~~~~~vav~vN~~iv~r~~-w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 26 LELDNKIVVVERNKDILQKDD-HTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred cCCCCCeEEEEECCEEeCHHH-cCceecCCCCEEEEEEEecCC
Confidence 678888899999998888643 344558999999998664443
No 87
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=85.44 E-value=0.9 Score=31.06 Aligned_cols=61 Identities=15% Similarity=0.329 Sum_probs=38.4
Q ss_pred EEecCCCcHHHHHHHHHHHhh-hhhhhhhhhccCccceeEEEECCe-------ecCCCCCccccCCCCCCEEEEE
Q psy4523 29 FKIKKGTPLRKLMNAYCERCV-SILSVLITLQNLSMSTVRFRFDGQ-------AINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 29 fkIk~tt~l~kL~~~y~~~~~-~~~~~~~~~~gl~~~~~rF~fdG~-------rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
+.+.++.+|+.+++..|++-+ +-.. .++.-..-.+++-+- |=+-+.+..+| +.||++|-|.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~-----PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKK-----PSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS------EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCC-----CcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 468899999999999999921 1000 222223334444332 22345778889 9999999885
No 88
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=83.71 E-value=4.3 Score=25.58 Aligned_cols=58 Identities=22% Similarity=0.444 Sum_probs=39.0
Q ss_pred EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 28 QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 28 ~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
.+.+....++..|.+. .+++.+.+....||+.+..++ =.+.-+.|||.|+++.--.||
T Consensus 8 ~~~~~~~~tv~~ll~~---------------l~~~~~~i~V~vNg~~v~~~~-~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 8 PREVEEGATLAELLEE---------------LGLDPRGVAVALNGEIVPRSE-WASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EEEcCCCCCHHHHHHH---------------cCCCCCcEEEEECCEEcCHHH-cCceecCCCCEEEEEEeccCC
Confidence 3444556666666543 456677888899998887643 222359999999998764444
No 89
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=83.44 E-value=10 Score=27.76 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=57.5
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCC-------CC
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEM-------EE 88 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~M-------eD 88 (126)
-|.|+- ....++...+.+++.-.|++..... ...+++..|++-++..|.++.|..++|. +.
T Consensus 4 FlmIrR-~KTTiF~dakes~tVlelK~~iegI-----------~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~ 71 (119)
T cd01788 4 FLMIRR-HKTTIFTDAKESTTVYELKRIVEGI-----------LKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQA 71 (119)
T ss_pred EEEEEe-cceEEEeecCCcccHHHHHHHHHHH-----------hcCChhHheeecCceeecccccHHHcCccccccccCC
Confidence 344442 3456789999999999999999988 7789999999988899999999999999 55
Q ss_pred CCEEEEEeee
Q psy4523 89 GDTIEIYQQQ 98 (126)
Q Consensus 89 GD~Idv~~~Q 98 (126)
-.++=..++.
T Consensus 72 pA~vgLa~r~ 81 (119)
T cd01788 72 PATVGLAFRS 81 (119)
T ss_pred CCeEEEEEec
Confidence 6666665553
No 90
>KOG3439|consensus
Probab=83.15 E-value=6 Score=28.85 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=51.2
Q ss_pred CCCCCcEEEEEEeccC----CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeec--CCCCCcc
Q psy4523 9 KSTDEHINLKVLGQDN----NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAI--NEQDTPS 82 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g----~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL--~~~~TP~ 82 (126)
++...+|+|+++.-.+ +...|+|.++.+|.++.....+. .+++.+.--|+|=.... +++++..
T Consensus 25 ~~~~~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~-----------Lkl~as~slflYVN~sFAPsPDq~v~ 93 (116)
T KOG3439|consen 25 EKNIRKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKF-----------LKLQASDSLFLYVNNSFAPSPDQIVG 93 (116)
T ss_pred CCCcceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHH-----------hCCcccCeEEEEEcCccCCCchhHHH
Confidence 4445789999886433 23469999999999999999999 88887777777744333 4677777
Q ss_pred ccCCCCC
Q psy4523 83 TLEMEEG 89 (126)
Q Consensus 83 dL~MeDG 89 (126)
+|-+-=|
T Consensus 94 ~Ly~cf~ 100 (116)
T KOG3439|consen 94 NLYECFG 100 (116)
T ss_pred HHHHhcC
Confidence 7765433
No 91
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=82.60 E-value=0.4 Score=40.25 Aligned_cols=96 Identities=11% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCCCCcEEEEEEeccCCEEEEEec---C--CCcHHHHHHHHHHHhhhhhhhhhhhccCccceeE-----EEECCeecCCC
Q psy4523 9 KSTDEHINLKVLGQDNNVVQFKIK---K--GTPLRKLMNAYCERCVSILSVLITLQNLSMSTVR-----FRFDGQAINEQ 78 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g~~v~fkIk---~--tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~r-----F~fdG~rL~~~ 78 (126)
+.....|+|.+++..+-.+.+++. + ++.+..|++++++++...- ......+++.+.++ ++|+-+++.+.
T Consensus 73 Pgs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~-~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ 151 (309)
T PF12754_consen 73 PGSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQ-ATYDETRVPLDKIKNFRCRLLYKKKPVGDS 151 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccc-cccccccCCHHHhhhhhhhheecCccCCCc
Confidence 334567999998887755543332 3 6888999999999532100 00002778888899 99999999889
Q ss_pred CCccccCCC-------CCCEEEEEeeecCCCcCC
Q psy4523 79 DTPSTLEME-------EGDTIEIYQQQTGGFKQT 105 (126)
Q Consensus 79 ~TP~dL~Me-------DGD~Idv~~~Q~GG~~~~ 105 (126)
.|..++.=+ .|-++++.+=-.||....
T Consensus 152 ktl~e~l~~~~~~l~~~~~~vE~gvMVlGGa~~~ 185 (309)
T PF12754_consen 152 KTLAEVLADSESRLLSGGKEVEFGVMVLGGAAVI 185 (309)
T ss_dssp ----------------------------------
T ss_pred CcHHHHHhcccchhccCCceEEEEEEEECCcccC
Confidence 999888644 466788888888887755
No 92
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=81.03 E-value=7.6 Score=26.91 Aligned_cols=63 Identities=11% Similarity=0.174 Sum_probs=46.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC---ccceeEEEECC--eecCCCCCccccCCCCCCEEEEEee
Q psy4523 27 VQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL---SMSTVRFRFDG--QAINEQDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 27 v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl---~~~~~rF~fdG--~rL~~~~TP~dL~MeDGD~Idv~~~ 97 (126)
.-+-|...+++..+-++.+..+++ .-+ +-..+++..+| ..+..++|.++.||..-|.|||+.+
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVG--------rRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVG--------RRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTT--------TSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcc--------eecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 347888899999999998888542 222 22379999999 9999999999999999999999864
No 93
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=80.84 E-value=9.3 Score=25.82 Aligned_cols=54 Identities=11% Similarity=0.400 Sum_probs=41.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE-CCeecCCCCCccccCCCCCCEEEEEee
Q psy4523 24 NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF-DGQAINEQDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 24 g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f-dG~rL~~~~TP~dL~MeDGD~Idv~~~ 97 (126)
+..+.+.+...++++.+.+ . .|++...+-+++ ||+.+..+ .-+++||.|.|+..
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----s-----------LGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----S-----------LGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYPV 76 (81)
T ss_pred CCceEEecCCCCcHHHHHH----H-----------cCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEec
Confidence 3556778888888888765 3 888877776666 89888875 56689999999854
No 94
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=80.70 E-value=9 Score=25.86 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=35.0
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc-ceeEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM-STVRFRF 70 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~-~~~rF~f 70 (126)
|+||+.- .+..+.|++.++..+..|.+..+++ .++.. ..+.+.|
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r-----------~~~~~~~~f~LkY 45 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKR-----------FKLDDMSAFDLKY 45 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHH-----------hCCCCCCeeEEEE
Confidence 4566654 4566789999999999999999999 66654 6777777
No 95
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=80.11 E-value=5.1 Score=26.62 Aligned_cols=55 Identities=11% Similarity=0.289 Sum_probs=41.4
Q ss_pred cCCCcHHHHHHHHHHHhhhhhhhhhhhcc-CccceeEEEECCeecCCCCCcccc-CCCCCCEEEEEee
Q psy4523 32 KKGTPLRKLMNAYCERCVSILSVLITLQN-LSMSTVRFRFDGQAINEQDTPSTL-EMEEGDTIEIYQQ 97 (126)
Q Consensus 32 k~tt~l~kL~~~y~~~~~~~~~~~~~~~g-l~~~~~rF~fdG~rL~~~~TP~dL-~MeDGD~Idv~~~ 97 (126)
.+++.+..|...-+.. .. ....++.|.++|.+|++.....++ ++++|..+.+..+
T Consensus 2 ~~~d~v~dvrq~L~~~-----------~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 2 SPTDTVQDVRQVLAES-----------PETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred ChhhHHHHHHHHHHhC-----------ccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 4556666776666666 22 345689999999999998888888 5888998888765
No 96
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=79.90 E-value=10 Score=24.88 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=37.9
Q ss_pred CCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 34 GTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 34 tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
..+++.|.+..+++...|. .-+..+.+++..||.-.. .+| -+.|||+|-++.--.||
T Consensus 25 ~~tv~~l~~~L~~~~~~~~------~~~~~~~~~~aVN~~~~~-~~~----~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWA------LALEDGKLLAAVNQTLVS-FDH----PLTDGDEVAFFPPVTGG 81 (81)
T ss_pred CCCHHHHHHHHHHhCccHH------hhhcCCCEEEEECCEEcC-CCC----CCCCCCEEEEeCCCCCC
Confidence 4788999998888832110 112345577777885543 344 49999999998876665
No 97
>PRK01777 hypothetical protein; Validated
Probab=79.68 E-value=13 Score=25.89 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=47.4
Q ss_pred cEEEEEEecc--C-CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523 14 HINLKVLGQD--N-NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD 90 (126)
Q Consensus 14 ~I~Ikv~~~~--g-~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD 90 (126)
.|.|.|.... . ....+.+...++...+.++.-= +.....++.....+..+|+.+.. +--++|||
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~sgi--------~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGD 69 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRASGL--------LELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGD 69 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHcCC--------CccCcccccccceEEEeCeECCC-----CCcCCCCC
Confidence 4666666532 2 3356888999999888765421 11112455556678889998875 33689999
Q ss_pred EEEEEeee
Q psy4523 91 TIEIYQQQ 98 (126)
Q Consensus 91 ~Idv~~~Q 98 (126)
.|+++--+
T Consensus 70 RVeIyrPL 77 (95)
T PRK01777 70 RVEIYRPL 77 (95)
T ss_pred EEEEecCC
Confidence 99998543
No 98
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=79.50 E-value=13 Score=32.43 Aligned_cols=76 Identities=11% Similarity=0.201 Sum_probs=54.3
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEE-ECCeecCCCCCccccCCCCCCEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFR-FDGQAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~-fdG~rL~~~~TP~dL~MeDGD~Id 93 (126)
.+|.|... .+.+..-+-.+.|+..|+....+....... ..-.....+|. .+|.+|++++|.++.++.|||+..
T Consensus 3 ~RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~-----~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~ 76 (452)
T TIGR02958 3 CRVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGA-----AELGAVRWALARAGGSPLDPDASLAEAGVRDGELLV 76 (452)
T ss_pred EEEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccc-----cCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEE
Confidence 56677664 456889999999999999999888321000 00112233333 389999999999999999999887
Q ss_pred EEe
Q psy4523 94 IYQ 96 (126)
Q Consensus 94 v~~ 96 (126)
...
T Consensus 77 L~p 79 (452)
T TIGR02958 77 LVP 79 (452)
T ss_pred Eee
Confidence 765
No 99
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=77.40 E-value=11 Score=25.56 Aligned_cols=70 Identities=17% Similarity=0.309 Sum_probs=48.4
Q ss_pred cEEEEEE-ecc-CCEE-EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccce-eEEEECCeecCCCCCccccCCCCC
Q psy4523 14 HINLKVL-GQD-NNVV-QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMST-VRFRFDGQAINEQDTPSTLEMEEG 89 (126)
Q Consensus 14 ~I~Ikv~-~~~-g~~v-~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~-~rF~fdG~rL~~~~TP~dL~MeDG 89 (126)
++++|+. +.| .... .++|-..+||..+.+.-|+. ..+++.+ .-..-||.-|++.||.-+.=|+-|
T Consensus 2 kvtfKI~ltsDp~~p~kv~sVPE~apftaVlkfaAee-----------F~vp~~tsaiItndG~GInP~QTag~vflKhG 70 (76)
T PF03671_consen 2 KVTFKITLTSDPKLPYKVISVPEEAPFTAVLKFAAEE-----------FKVPPATSAIITNDGVGINPQQTAGNVFLKHG 70 (76)
T ss_dssp EEEEEEEESTSSTS-EEEEEEETTSBHHHHHHHHHHH-----------TTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-
T ss_pred cEEEEEEEccCCCCcceEEecCCCCchHHHHHHHHHH-----------cCCCCceEEEEecCCcccccchhhhhhHhhcC
Confidence 3455554 233 2333 58999999999999999999 7787654 555557999999999998888888
Q ss_pred CEEEE
Q psy4523 90 DTIEI 94 (126)
Q Consensus 90 D~Idv 94 (126)
-++-+
T Consensus 71 seLrl 75 (76)
T PF03671_consen 71 SELRL 75 (76)
T ss_dssp SEEEE
T ss_pred cEeee
Confidence 76543
No 100
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=77.32 E-value=6.1 Score=27.32 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=38.6
Q ss_pred cEEEEEEeccC----CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeec--CCCCCcccc
Q psy4523 14 HINLKVLGQDN----NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAI--NEQDTPSTL 84 (126)
Q Consensus 14 ~I~Ikv~~~~g----~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL--~~~~TP~dL 84 (126)
+|+|+++.-.+ +.-.|+|..+.+|..+.+.-+++ .++..+.--|+|=+... ++++|..+|
T Consensus 1 KV~v~fk~iG~aPilk~~k~kI~~~~~f~~vi~fLrk~-----------Lk~~~~~slFlYin~sFaPspDe~vg~L 66 (87)
T PF04110_consen 1 KVTVRFKAIGSAPILKQKKFKISASQTFATVIAFLRKK-----------LKLKPSDSLFLYINNSFAPSPDETVGDL 66 (87)
T ss_dssp EEEEEEEEETT----S--EEEEETTSBTHHHHHHHHHH-----------CT----SS-EEEEEEEE---TTSBHHHH
T ss_pred CEEEEEEecCCCccccCcEEEECCCCchHHHHHHHHHH-----------hCCccCCeEEEEEcCccCCCchhHHHHH
Confidence 36677765433 33479999999999999999999 77766665566644433 467887776
No 101
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=77.24 E-value=16 Score=24.94 Aligned_cols=59 Identities=17% Similarity=0.328 Sum_probs=49.7
Q ss_pred EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccce-eEEEECCeecCCCCCccccCCCCCCEEEEEee
Q psy4523 28 QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMST-VRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 28 ~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~-~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~ 97 (126)
.++|-..+||..+.+.-|+. .+++..+ --..-||.=|++.||....=|+.|..+-+..+
T Consensus 19 vlsVpE~aPftAvlkfaAEe-----------Fkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPR 78 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEE-----------FKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPR 78 (82)
T ss_pred EEeccccCchHHHHHHHHHh-----------cCCCccceeEEecCccccChhhcccceeeecCCEeeeccc
Confidence 47888999999999999999 7787654 55566899999999999999999988877643
No 102
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=77.03 E-value=17 Score=25.10 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=36.4
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF 70 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f 70 (126)
+|+|||.. .|..+.+.|.++..|..|.+...++ .++. ..+++.|
T Consensus 2 ~ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdk-----------f~~~-~~~~iKy 45 (86)
T cd06408 2 KIRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDK-----------FGFK-RRLKIKM 45 (86)
T ss_pred cEEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHH-----------hCCC-CceEEEE
Confidence 68888875 4777899999999999999999999 7774 4666666
No 103
>KOG0013|consensus
Probab=77.00 E-value=4.6 Score=32.56 Aligned_cols=82 Identities=12% Similarity=0.130 Sum_probs=63.0
Q ss_pred CCCCCCCcEEEEEEec-cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccC
Q psy4523 7 ESKSTDEHINLKVLGQ-DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLE 85 (126)
Q Consensus 7 ~~~~~~~~I~Ikv~~~-~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~ 85 (126)
|.++....+.++++.. .+..+..+..-.+....++++-... .|+++-..+..|+|..|.+..-.+++.
T Consensus 138 ppp~~~~e~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aa-----------eg~D~~sQrif~Sg~~l~dkt~LeEc~ 206 (231)
T KOG0013|consen 138 PPPSNHTEPILKLRLTTTREDFWLTAPHYDTVGEIKRALRAA-----------EGVDPLSQRIFFSGGVLVDKTDLEECK 206 (231)
T ss_pred CCCCCCCCcchHHHhhhhhhheeecccCcCcHHHHHHHHHHh-----------hccchhhheeeccCCceeccccceeee
Confidence 3344444555555544 4677788888888888888888878 888888999999999999999999999
Q ss_pred CCCC--CEEEEEeeec
Q psy4523 86 MEEG--DTIEIYQQQT 99 (126)
Q Consensus 86 MeDG--D~Idv~~~Q~ 99 (126)
+|.| =++-+++-|-
T Consensus 207 iekg~rYvlqviVlq~ 222 (231)
T KOG0013|consen 207 IEKGQRYVLQVIVLQE 222 (231)
T ss_pred ecCCCEEEEEEEeccC
Confidence 9999 5566665543
No 104
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=74.13 E-value=12 Score=27.45 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=31.8
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHH
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCER 47 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~ 47 (126)
..+.|+|.-.||..+.+.+..+++.+.+.+..|++
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~ 36 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRK 36 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHH
Confidence 35777888889999999999999999999999999
No 105
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=73.86 E-value=18 Score=23.05 Aligned_cols=44 Identities=14% Similarity=0.340 Sum_probs=34.2
Q ss_pred EEEEEEeccCCEEEEEec-CCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIK-KGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF 70 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk-~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f 70 (126)
|+||+... |....|.+. +...+..|....+++ .+.....+++.|
T Consensus 1 ~~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~-----------~~~~~~~~~l~y 45 (81)
T cd05992 1 VRVKVKYG-GEIRRFVVVSRSISFEDLRSKIAEK-----------FGLDAVSFKLKY 45 (81)
T ss_pred CcEEEEec-CCCEEEEEecCCCCHHHHHHHHHHH-----------hCCCCCcEEEEe
Confidence 35677654 566789999 999999999999999 666555667766
No 106
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=73.47 E-value=15 Score=23.87 Aligned_cols=56 Identities=14% Similarity=0.360 Sum_probs=38.9
Q ss_pred EEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeecCCCCCcccc
Q psy4523 18 KVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAINEQDTPSTL 84 (126)
Q Consensus 18 kv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL~~~~TP~dL 84 (126)
+|.=.+|+.....++++.+++.....-|++ +|+.+....++. ..++|.-++....|
T Consensus 4 ~v~LP~~q~t~V~vrpg~ti~d~L~~~~~k-----------r~L~~~~~~V~~~~~~k~l~~~~d~~~L 61 (71)
T PF02196_consen 4 RVHLPNGQRTVVQVRPGMTIRDALSKACKK-----------RGLNPECCDVRLVGEKKPLDWDQDSSSL 61 (71)
T ss_dssp EEEETTTEEEEEEE-TTSBHHHHHHHHHHT-----------TT--CCCEEEEEEEEEEEE-TTSBGGGG
T ss_pred EEECCCCCEEEEEEcCCCCHHHHHHHHHHH-----------cCCCHHHEEEEEcCCCccccCCCceeee
Confidence 344488999999999999999999999999 999887655444 34555555554444
No 107
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=73.23 E-value=14 Score=25.11 Aligned_cols=43 Identities=23% Similarity=0.388 Sum_probs=35.9
Q ss_pred EEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccc--eeEEEEC
Q psy4523 18 KVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMS--TVRFRFD 71 (126)
Q Consensus 18 kv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~--~~rF~fd 71 (126)
+|.-+||..+...|++..++..+.+.-|++ +++++. .+|+.+-
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~-----------~~ldp~eh~Lrlk~~ 47 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKR-----------KQLDPMEHYLRLKFL 47 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHh-----------cCCChhHheeEEEEE
Confidence 344578999999999999999999999999 999876 4666554
No 108
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=73.20 E-value=18 Score=24.71 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=33.6
Q ss_pred EEEEEEeccCCEEEEEecC--CCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKK--GTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF 70 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~--tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f 70 (126)
|+||+.. .|..+.|++.+ +..+..|....+++ .+++ .+.+.|
T Consensus 1 V~vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~r-----------f~l~--~f~lKY 44 (81)
T cd06396 1 VNLKVTY-NGESQSFLVSDSENTTWASVEAMVKVS-----------FGLN--DIQIKY 44 (81)
T ss_pred CEEEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHH-----------hCCC--cceeEE
Confidence 4677754 57778999999 88999999999999 7776 555555
No 109
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=72.79 E-value=24 Score=23.11 Aligned_cols=66 Identities=21% Similarity=0.437 Sum_probs=45.5
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
|+|.+ +|+ ...++..+++..|.+ . .|++...+-...||..+..++ -++..+++||.|++
T Consensus 3 m~i~~---ng~--~~e~~~~~tv~dLL~----~-----------l~~~~~~vav~vNg~iVpr~~-~~~~~l~~gD~iev 61 (68)
T COG2104 3 MTIQL---NGK--EVEIAEGTTVADLLA----Q-----------LGLNPEGVAVAVNGEIVPRSQ-WADTILKEGDRIEV 61 (68)
T ss_pred EEEEE---CCE--EEEcCCCCcHHHHHH----H-----------hCCCCceEEEEECCEEccchh-hhhccccCCCEEEE
Confidence 45555 344 445555567666654 3 678889999999998886432 35667899999999
Q ss_pred EeeecCC
Q psy4523 95 YQQQTGG 101 (126)
Q Consensus 95 ~~~Q~GG 101 (126)
.---.||
T Consensus 62 v~~v~GG 68 (68)
T COG2104 62 VRVVGGG 68 (68)
T ss_pred EEeecCC
Confidence 8765554
No 110
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=71.13 E-value=26 Score=29.72 Aligned_cols=67 Identities=18% Similarity=0.339 Sum_probs=47.7
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
+|+| +|+ .+.+....++..|.+ . .+++.+.+..-+||+-|..++ =.+.-++|||.|+++
T Consensus 2 ~I~V---NGk--~~el~e~~TL~dLL~----~-----------L~i~~~~VAVeVNgeIVpr~~-w~~t~LkeGD~IEII 60 (326)
T PRK11840 2 RIRL---NGE--PRQVPAGLTIAALLA----E-----------LGLAPKKVAVERNLEIVPRSE-YGQVALEEGDELEIV 60 (326)
T ss_pred EEEE---CCE--EEecCCCCcHHHHHH----H-----------cCCCCCeEEEEECCEECCHHH-cCccccCCCCEEEEE
Confidence 4555 454 355566777776654 4 678888999999999987433 344559999999999
Q ss_pred eeecCCCc
Q psy4523 96 QQQTGGFK 103 (126)
Q Consensus 96 ~~Q~GG~~ 103 (126)
.---||..
T Consensus 61 ~~VgGGs~ 68 (326)
T PRK11840 61 HFVGGGSD 68 (326)
T ss_pred EEecCCCC
Confidence 87666655
No 111
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=70.38 E-value=32 Score=23.59 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=40.9
Q ss_pred CCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 33 KGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 33 ~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
...+++.|.+.-+++....-.-.-...|--...+.++.||..+.- .--.+..++|||+|.++.-.-||
T Consensus 27 ~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~-l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 27 KPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWEL-LGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred CCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccc-cCCcccCCCCcCEEEEECCCCCC
Confidence 456899998888877310000000012222346788889988752 22344568999999998765554
No 112
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=68.87 E-value=19 Score=22.92 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=32.0
Q ss_pred eccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc-ceeEEEE
Q psy4523 21 GQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM-STVRFRF 70 (126)
Q Consensus 21 ~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~-~~~rF~f 70 (126)
-.||....|.|.++++-+.|++..|++ .|+.. .-+-+.|
T Consensus 3 llD~~~~~~~v~~~~t~~~l~~~v~~~-----------l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 3 LLDGTTKTFEVDPKTTGQDLLEQVCDK-----------LGLKEKEYFGLQY 42 (80)
T ss_dssp ESSEEEEEEEEETTSBHHHHHHHHHHH-----------HTTSSGGGEEEEE
T ss_pred CcCCCcEEEEEcCCCcHHHHHHHHHHH-----------cCCCCccEEEEEE
Confidence 367888999999999999999999999 77743 3466666
No 113
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=67.61 E-value=25 Score=22.50 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=33.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 27 VQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 27 v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
....++..+++..|.+.+... +=.+++||-.+. +++.+.+||.|-+.
T Consensus 8 k~~~~~~~~tl~~lr~~~k~~-----------------~DI~I~NGF~~~-----~d~~L~e~D~v~~I 54 (57)
T PF14453_consen 8 KEIETEENTTLFELRKESKPD-----------------ADIVILNGFPTK-----EDIELKEGDEVFLI 54 (57)
T ss_pred EEEEcCCCcCHHHHHHhhCCC-----------------CCEEEEcCcccC-----CccccCCCCEEEEE
Confidence 467777888888887766554 224788996554 57889999988665
No 114
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=63.19 E-value=23 Score=24.12 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=42.5
Q ss_pred cEEEEEEeccC----CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCee--cCCCCCcccc
Q psy4523 14 HINLKVLGQDN----NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQA--INEQDTPSTL 84 (126)
Q Consensus 14 ~I~Ikv~~~~g----~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~r--L~~~~TP~dL 84 (126)
+|+|+++.-.. ....|.|..+.++..++..-.++ .++++++--|+|=+.. ...++|..+|
T Consensus 1 kv~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~-----------L~l~~~~slflyvnn~f~p~~d~~~g~L 66 (87)
T cd01612 1 KVTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKR-----------LKLKASDSLFLYINNSFAPSPDENVGNL 66 (87)
T ss_pred CeEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHH-----------hCCCccCeEEEEECCccCCCchhHHHHH
Confidence 36666664322 33469999999999999999999 8887777666665543 3345677665
No 115
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=63.18 E-value=48 Score=22.98 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=43.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC-----eec-CCCCCccccCCCCCCEEEEEeeec
Q psy4523 26 VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG-----QAI-NEQDTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 26 ~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG-----~rL-~~~~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
.++-.+.+++++..+.+.-++. ..+ ....|++-.+ .+| .+..|..++++.+|-.|.+-.+..
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rkl-----------f~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~ 82 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKL-----------FNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNE 82 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHH-----------CT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--T
T ss_pred HhHhhccccChHHHHHHHHHHH-----------hCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeecc
Confidence 5678889999999999999999 777 6667877622 345 456899999999999877766654
Q ss_pred CC
Q psy4523 100 GG 101 (126)
Q Consensus 100 GG 101 (126)
-|
T Consensus 83 DG 84 (88)
T PF14836_consen 83 DG 84 (88)
T ss_dssp TS
T ss_pred CC
Confidence 44
No 116
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=61.46 E-value=41 Score=21.60 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=42.8
Q ss_pred EEEEEEeccCC----EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC--ccceeEEE-EC-----CeecCCCCCcc
Q psy4523 15 INLKVLGQDNN----VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL--SMSTVRFR-FD-----GQAINEQDTPS 82 (126)
Q Consensus 15 I~Ikv~~~~g~----~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl--~~~~~rF~-fd-----G~rL~~~~TP~ 82 (126)
-.|+|-..++. ...++|..+++-+.++....++ .++ ++..+.+. +. -+.|.+++-|-
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k-----------~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl 71 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEK-----------FGLAEDPSDYCLVEVEESGGEERPLDDDECPL 71 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHH-----------TTTSSSGGGEEEEEEECTTTEEEEETTTSBHH
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHH-----------hCCCCCCCCEEEEEEEcCCCEEEEcCCCCchH
Confidence 35677767776 7899999999999999999999 776 45566664 21 23455566555
Q ss_pred ccC
Q psy4523 83 TLE 85 (126)
Q Consensus 83 dL~ 85 (126)
.+-
T Consensus 72 ~i~ 74 (93)
T PF00788_consen 72 QIQ 74 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 117
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.29 E-value=10 Score=26.94 Aligned_cols=71 Identities=15% Similarity=0.385 Sum_probs=46.2
Q ss_pred cEEEEEEe--ccCCE-EEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523 14 HINLKVLG--QDNNV-VQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD 90 (126)
Q Consensus 14 ~I~Ikv~~--~~g~~-v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD 90 (126)
.|.|-|.. .+... ..+.+...++......+- +.+..+.+++....+|=.-|+.+...+. ++|||
T Consensus 3 ~I~VevvyAlPerq~l~~v~v~egatV~dAi~~S--------gll~~~~~idl~~n~~GI~~k~~kl~~~-----l~dgD 69 (99)
T COG2914 3 MIAVEVVYALPERQYLCRVQLQEGATVEDAILAS--------GLLELFPDIDLHENKVGIYSKPVKLDDE-----LHDGD 69 (99)
T ss_pred eeEEEEEEEcCCcceEEEEEeccCcCHHHHHHhc--------chhhccccCCccccceeEEccccCcccc-----ccCCC
Confidence 34555543 33332 357888888877644321 1233457888888888888888887654 89999
Q ss_pred EEEEEee
Q psy4523 91 TIEIYQQ 97 (126)
Q Consensus 91 ~Idv~~~ 97 (126)
.|+++--
T Consensus 70 RVEIyRP 76 (99)
T COG2914 70 RVEIYRP 76 (99)
T ss_pred EEEEecc
Confidence 9999843
No 118
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=60.61 E-value=20 Score=24.90 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=42.8
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeE----EEEC----CeecCCCCCccccC
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVR----FRFD----GQAINEQDTPSTLE 85 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~r----F~fd----G~rL~~~~TP~dL~ 85 (126)
+.|+|.=.||..+.++|+++..-..+.++-|.+ -|++..... |... =++|.+.+-|-.|-
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~k-----------l~L~~e~~~YFaLFev~~~~f~RKL~dfE~Ph~ly 69 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAK-----------AGMDSYTQNYFALFEVINHSFVRKLAPNEFPHKLY 69 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHH-----------hCCCHHHHhheeeeEEecceEEEeccCccCCceEE
Confidence 456666688999999999999999999999999 777654321 1111 24556666665553
No 119
>KOG1872|consensus
Probab=60.11 E-value=62 Score=28.90 Aligned_cols=68 Identities=7% Similarity=0.067 Sum_probs=54.2
Q ss_pred EEEEEeccCCEEEEE-ecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 16 NLKVLGQDNNVVQFK-IKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fk-Ik~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
+|.|+.+ |+..... +..+.+-.-++...-.. .|++|+..++.+.|..+.++--+.-|++++|-+|.+
T Consensus 5 ~v~VKW~-gk~y~v~~l~~d~t~~vlKaqlf~L-----------TgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmM 72 (473)
T KOG1872|consen 5 TVIVKWG-GKKYPVETLSTDETPSVLKAQLFAL-----------TGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMM 72 (473)
T ss_pred eEeeeec-CccccceeccCCCchHHHHHHHHHh-----------cCCCccceeEEEecccccccccccccccCCCCEEEe
Confidence 4555543 4444444 78888888888877777 899999999999999999888899999999998876
Q ss_pred E
Q psy4523 95 Y 95 (126)
Q Consensus 95 ~ 95 (126)
+
T Consensus 73 m 73 (473)
T KOG1872|consen 73 M 73 (473)
T ss_pred e
Confidence 4
No 120
>KOG3073|consensus
Probab=59.67 E-value=32 Score=27.79 Aligned_cols=77 Identities=14% Similarity=0.324 Sum_probs=54.1
Q ss_pred CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhh----------------h-hhhhccCccc--eeEEEE
Q psy4523 10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILS----------------V-LITLQNLSMS--TVRFRF 70 (126)
Q Consensus 10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~----------------~-~~~~~gl~~~--~~rF~f 70 (126)
+...++.|-+++..| +-+.|++..++.+-|+.||..++|-+. | |+...-++++ .+.|.|
T Consensus 90 NkAgkLqVyi~T~kn--vLiEvnp~~rIPrtfkrfsglMvqLLhKlsIra~d~~~kLlkVvKNPVtdHlPv~~~Ki~lSf 167 (236)
T KOG3073|consen 90 NKAGKLQVYIHTAKN--VLIEVNPQVRIPRTFKRFSGLMVQLLHKLSIRAVDGTEKLLKVVKNPVTDHLPVNSRKIGLSF 167 (236)
T ss_pred cccceeEEEEEccCc--eEEEecccccCCCCHHHHHHHHHHHHHHheEeccCchHHHHHHhcCcccccCCCCccEEeecC
Confidence 345678888887644 788999999999999999999886554 1 3444455554 689999
Q ss_pred CCeecC-CCCCccccCCCCCC
Q psy4523 71 DGQAIN-EQDTPSTLEMEEGD 90 (126)
Q Consensus 71 dG~rL~-~~~TP~dL~MeDGD 90 (126)
+|..+. ..+-.+++ +|++
T Consensus 168 ~~p~l~~~~~lv~~~--~~~~ 186 (236)
T KOG3073|consen 168 SGPKLSNVRDLVASL--DDDD 186 (236)
T ss_pred CCcccccHHhhcccc--CCCC
Confidence 999998 33444443 4554
No 121
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=59.47 E-value=17 Score=27.77 Aligned_cols=70 Identities=23% Similarity=0.259 Sum_probs=49.5
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC---ccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL---SMSTVRFRFDGQAINEQDTPSTLEMEEGD 90 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl---~~~~~rF~fdG~rL~~~~TP~dL~MeDGD 90 (126)
.|++.| +|..+++.+.+.++|..+....-..- .+..|- .-.....++||+++...-||+.. -+|.
T Consensus 3 ~i~ltv---NG~~~~~~~~p~~~Ll~~LRd~l~lt-------gtk~GC~~g~CGACtVlvDG~~v~SCl~~a~~--~~G~ 70 (156)
T COG2080 3 PITLTV---NGEPVELDVDPRTPLLDVLRDELGLT-------GTKKGCGHGQCGACTVLVDGEAVNSCLTLAVQ--AEGA 70 (156)
T ss_pred cEEEEE---CCeEEEEEeCCCChHHHHHHHhcCCC-------CcCCCCCCccCCceEEEECCeEehHHHHHHHH--hCCC
Confidence 466666 78899999999999998877555441 111222 13467889999999999999764 5777
Q ss_pred EEEEE
Q psy4523 91 TIEIY 95 (126)
Q Consensus 91 ~Idv~ 95 (126)
.|.=.
T Consensus 71 ~ItTi 75 (156)
T COG2080 71 EITTI 75 (156)
T ss_pred eEEEe
Confidence 66544
No 122
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=59.16 E-value=43 Score=23.36 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=43.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEee
Q psy4523 27 VQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 27 v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~ 97 (126)
+...|.-.+||..|++....| .|++.+...|+.....|.++.+.-+-+.+-.-.+.+.++
T Consensus 5 I~q~mDI~epl~~Lk~lLe~R-----------l~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERR-----------LGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHH-----------H-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHh-----------hCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 456677789999999999999 999999999999988899999999999998888777655
No 123
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=58.15 E-value=45 Score=29.70 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=50.9
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC----Cee--cCCCCCccccCCCCC
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD----GQA--INEQDTPSTLEMEEG 89 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd----G~r--L~~~~TP~dL~MeDG 89 (126)
-+++++.+|. ....+-+++.|..|.......++ .|.+++++...=. |.. +-.++||.+||+..|
T Consensus 2 i~rfRsk~G~-~Rve~qe~d~lg~l~~kll~~~~---------~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hG 71 (571)
T COG5100 2 IFRFRSKEGQ-RRVEVQESDVLGMLSPKLLAFFE---------VNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHG 71 (571)
T ss_pred eEEEecCCCc-eeeeccccchhhhhhHHHHhhhc---------cCCCccceEEEeCCCCCceeeecccccChhhhccccC
Confidence 4678887774 35777889999988777666644 4556666655542 332 235899999999999
Q ss_pred CEEEEEe
Q psy4523 90 DTIEIYQ 96 (126)
Q Consensus 90 D~Idv~~ 96 (126)
+.+.+..
T Consensus 72 qmLyl~y 78 (571)
T COG5100 72 QMLYLEY 78 (571)
T ss_pred cEEEEEe
Confidence 9988776
No 124
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=56.61 E-value=27 Score=24.00 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=32.3
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHH
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCER 47 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~ 47 (126)
+.++.|-|.+.++++.-|.+++++-+.++...||--
T Consensus 6 ~grl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~Tp 41 (83)
T PF10623_consen 6 PGRLQVLVVSNHCERKLFDTKPDNDPDKIARRFCTP 41 (83)
T ss_pred CCeEEEEEEeCCcceeEeecCCCCCHHHHHhhccCc
Confidence 458999999989999999999999999999999865
No 125
>PF12143 PPO1_KFDV: Protein of unknown function (DUF_B2219); InterPro: IPR022740 This domain represents the C terminus of polyphenol oxidases. This region is primarily found in eukaryotes, although a few bacterial members also exist. It is typically between 138 and 152 amino acids in length and the family is found in association with PF00264 from PFAM and PF12142 from PFAM. Many members are plant or plastid polyphenol oxidases, and there is a highly conserved KFDV sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process
Probab=53.31 E-value=8.6 Score=28.35 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=27.3
Q ss_pred eecCCCCCccccCCCCCCEEEEEeeecCCCc
Q psy4523 73 QAINEQDTPSTLEMEEGDTIEIYQQQTGGFK 103 (126)
Q Consensus 73 ~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG~~ 103 (126)
-||.-++..++|+.+|.|.|.|.+-+.+|+.
T Consensus 89 ~rlgitdlLedLga~~d~sIvVTLVPr~g~~ 119 (130)
T PF12143_consen 89 LRLGITDLLEDLGAEDDDSIVVTLVPRGGGD 119 (130)
T ss_pred EEEEhhHHHHHhCCCCCCEEEEEEEEccCCC
Confidence 4666788999999999999999999999973
No 126
>PF01982 CTP-dep_RFKase: Domain of unknown function DUF120; InterPro: IPR023602 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents a CTP-dependent riboflavin kinase domain, found primarily in archaea, that catalyses the phosphorylation of riboflavin to form flavin mononucleotide in riboflavin biosynthesis. Its structure resembles a RIFT barrel, structurally similar to but topologically distinct from bacterial and eukaryotic examples []. The N-terminal is a winged helix-turn-helix DNA-binding domain, and the C-terminal half is most similar in sequence to a group of cradle-loop barrels.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2VBV_A 2VBU_A 2VBS_A 2VBT_A 2P3M_A 2OYN_A 3CTA_A.
Probab=53.00 E-value=8.5 Score=28.16 Aligned_cols=15 Identities=33% Similarity=0.660 Sum_probs=9.5
Q ss_pred cccCCCCCCEEEEEe
Q psy4523 82 STLEMEEGDTIEIYQ 96 (126)
Q Consensus 82 ~dL~MeDGD~Idv~~ 96 (126)
+.|+++|||+|.|.+
T Consensus 107 ~~L~L~DGD~V~v~V 121 (121)
T PF01982_consen 107 DTLGLKDGDEVEVEV 121 (121)
T ss_dssp HHTT--TT-EEEEEE
T ss_pred hhcCCCCCCEEEEEC
Confidence 468999999998864
No 127
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=50.75 E-value=6.8 Score=26.56 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=17.7
Q ss_pred ecCCCCCccccCCCCCCEEEEEe
Q psy4523 74 AINEQDTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 74 rL~~~~TP~dL~MeDGD~Idv~~ 96 (126)
.|++ ++++.++++|||.|.|.-
T Consensus 38 ~inp-~dA~~lgi~~Gd~V~v~~ 59 (120)
T cd00508 38 EIHP-EDAARLGIKDGDLVRVSS 59 (120)
T ss_pred EECH-HHHHHcCCCCCCEEEEEe
Confidence 4443 789999999999998873
No 128
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=49.86 E-value=7.4 Score=26.37 Aligned_cols=19 Identities=16% Similarity=0.510 Sum_probs=16.4
Q ss_pred CCCccccCCCCCCEEEEEe
Q psy4523 78 QDTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~~ 96 (126)
.++++.++++|||.|.+.-
T Consensus 41 ~~dA~~lgi~~Gd~V~v~~ 59 (116)
T cd02790 41 PEDAKRLGIEDGEKVRVSS 59 (116)
T ss_pred HHHHHHcCCCCCCEEEEEc
Confidence 4789999999999988774
No 129
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=48.98 E-value=85 Score=21.52 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=33.2
Q ss_pred EEEEEeccCCEEEEEecC-----CCcHHHHHHHHHHHhhhhhhhhhhhccCcc-ceeEEEE
Q psy4523 16 NLKVLGQDNNVVQFKIKK-----GTPLRKLMNAYCERCVSILSVLITLQNLSM-STVRFRF 70 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~-----tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~-~~~rF~f 70 (126)
.||+.. ++..+.|++.. +-.+..|.+..+++ .+++. ..+.+.|
T Consensus 2 ~vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~-----------f~l~~~~~~~l~Y 50 (91)
T cd06398 2 VVKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEEL-----------FSLSPDADLSLTY 50 (91)
T ss_pred EEEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHH-----------hCCCCCCcEEEEE
Confidence 566654 45556788884 79999999999999 77865 5777777
No 130
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=48.96 E-value=85 Score=21.50 Aligned_cols=57 Identities=18% Similarity=0.434 Sum_probs=31.5
Q ss_pred EEEEecCCCcHHHHHHH--HHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeee
Q psy4523 27 VQFKIKKGTPLRKLMNA--YCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 27 v~fkIk~tt~l~kL~~~--y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+...+++....++ ..++ ..+++....++=.-|+.+. .+--+++||.||++--+
T Consensus 16 ~~l~vp~GtTv~~Ai~~Sgi~~~----------~p~idl~~~~vGIfGk~~~-----~d~~L~~GDRVEIYRPL 74 (84)
T PF03658_consen 16 LTLEVPEGTTVAQAIEASGILEQ----------FPEIDLEKNKVGIFGKLVK-----LDTVLRDGDRVEIYRPL 74 (84)
T ss_dssp EEEEEETT-BHHHHHHHHTHHHH-----------TT--TTTSEEEEEE-S-------TT-B--TT-EEEEE-S-
T ss_pred EEEECCCcCcHHHHHHHcCchhh----------CcccCcccceeeeeeeEcC-----CCCcCCCCCEEEEeccC
Confidence 46889999998876553 2233 2667777777777787777 44568999999998543
No 131
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=48.02 E-value=7.9 Score=26.51 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=15.6
Q ss_pred CCCccccCCCCCCEEEEE
Q psy4523 78 QDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~ 95 (126)
.++++.|+++|||.|.|.
T Consensus 41 p~dA~~lgi~~Gd~V~v~ 58 (122)
T cd02792 41 PELAAERGIKNGDMVWVS 58 (122)
T ss_pred HHHHHHcCCCCCCEEEEE
Confidence 468999999999998776
No 132
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.97 E-value=88 Score=25.57 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCcccc-CCCCCCEEEEEeeecCC
Q psy4523 35 TPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTL-EMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 35 t~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL-~MeDGD~Idv~~~Q~GG 101 (126)
-++..|+...++- ..+.+.++-++ -||.-. -|++||+|++.++..|=
T Consensus 210 ~~i~~lI~~lS~~-----------~tL~pGDvI~T---------GTP~Gvg~l~~GD~v~~~iegiG~ 257 (266)
T COG0179 210 FSIPELIAYLSRF-----------MTLEPGDVILT---------GTPSGVGFLKPGDVVEVEIEGIGE 257 (266)
T ss_pred cCHHHHHHHHhCC-----------cccCCCCEEEe---------CCCCCcccCCCCCEEEEEecceeE
Confidence 3456666655555 66666665543 466665 59999999999998774
No 133
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=46.44 E-value=8.6 Score=26.21 Aligned_cols=18 Identities=11% Similarity=0.429 Sum_probs=15.2
Q ss_pred CCCccccCCCCCCEEEEE
Q psy4523 78 QDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~ 95 (126)
.+++++++++|||.|.|.
T Consensus 37 p~dA~~lgi~~Gd~V~v~ 54 (116)
T cd02786 37 PADAAARGIADGDLVVVF 54 (116)
T ss_pred HHHHHHcCCCCCCEEEEE
Confidence 477889999999988765
No 134
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=46.03 E-value=22 Score=23.70 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=33.0
Q ss_pred cCCCcHHHHHHHHHHHhhhhhhhhhhhccCccc--eeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 32 KKGTPLRKLMNAYCERCVSILSVLITLQNLSMS--TVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 32 k~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~--~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
.-.++++.|.+.|.++...| ..... .+.---+.+.+.+.+| .|.|||+|-++.--.||
T Consensus 25 ~~~~tv~~L~~~l~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~t----~L~dGDeVa~~PPVsGG 84 (84)
T COG1977 25 TVGATVGELEELLPKEGERW--------LLALEDNIVVNAANNEFLVGLDT----PLKDGDEVAFFPPVSGG 84 (84)
T ss_pred cHHHHHHHHHHHHHhhhhhH--------HhccCccceEEeeeceeeccccc----cCCCCCEEEEeCCCCCC
Confidence 33577888888887772110 01111 1111223344444444 58999999999877776
No 135
>PRK14132 riboflavin kinase; Provisional
Probab=45.59 E-value=15 Score=27.09 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=12.4
Q ss_pred cccCCCCCCEEEEEe
Q psy4523 82 STLEMEEGDTIEIYQ 96 (126)
Q Consensus 82 ~dL~MeDGD~Idv~~ 96 (126)
+.|+++|||+|.+.+
T Consensus 112 ~~L~LkDGD~V~I~i 126 (126)
T PRK14132 112 KFLNLKDGDVVKIVI 126 (126)
T ss_pred hhcCCCCCCEEEEEC
Confidence 468999999998753
No 136
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=45.40 E-value=65 Score=22.44 Aligned_cols=56 Identities=16% Similarity=0.304 Sum_probs=37.7
Q ss_pred EEEEEEeccCCEEEEEec--CCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523 15 INLKVLGQDNNVVQFKIK--KGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk--~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I 92 (126)
|.|+++.++|..+--.|. ..-.|..+.++..+. ++.. .-|+-+++=||||.|
T Consensus 1 lVIRIk~p~gg~vDw~V~~~~~L~F~DvL~~I~~v-------------lp~a-------------T~tAFeYEDE~gDRI 54 (91)
T cd06395 1 LVIRIKIPNGGAVDWTVQSGPQLLFRDVLDVIGQV-------------LPEA-------------TTTAFEYEDEDGDRI 54 (91)
T ss_pred CeEEEeCCCCCcccccccCcccccHHHHHHHHHHh-------------cccc-------------cccceeeccccCCee
Confidence 356677788877776666 445677888877777 3222 245556666899999
Q ss_pred EEEe
Q psy4523 93 EIYQ 96 (126)
Q Consensus 93 dv~~ 96 (126)
.|.-
T Consensus 55 TVRS 58 (91)
T cd06395 55 TVRS 58 (91)
T ss_pred Eecc
Confidence 8874
No 137
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=44.01 E-value=20 Score=20.92 Aligned_cols=22 Identities=27% Similarity=0.664 Sum_probs=17.1
Q ss_pred CCccccCCCCCCEEEEEeeecC
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQTG 100 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~G 100 (126)
..+.+|.++.||.|.|.-....
T Consensus 9 ~~~~eLs~~~Gd~i~v~~~~~~ 30 (48)
T PF00018_consen 9 EDPDELSFKKGDIIEVLEKSDD 30 (48)
T ss_dssp SSTTBSEB-TTEEEEEEEESSS
T ss_pred CCCCEEeEECCCEEEEEEecCC
Confidence 4589999999999999866554
No 138
>KOG1363|consensus
Probab=43.88 E-value=59 Score=28.76 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=37.0
Q ss_pred ccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHH
Q psy4523 5 KKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCER 47 (126)
Q Consensus 5 ~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~ 47 (126)
++|+....+.|+|.++..+|....-++++.+++..+++.+...
T Consensus 374 ~EP~a~~~~~~~l~iR~P~G~r~~RrF~~s~~~q~l~~~v~~~ 416 (460)
T KOG1363|consen 374 PEPSASEEEAITVAIRLPSGTRLERRFLKSDKLQILYDYVDSN 416 (460)
T ss_pred CCCCcCcccceeeEEECCCCCeeeeeeecccchhHHHHHHHhc
Confidence 4555667789999999999998899999999999999987766
No 139
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=43.39 E-value=10 Score=25.45 Aligned_cols=19 Identities=16% Similarity=0.462 Sum_probs=14.1
Q ss_pred CCCccccCCCCCCEEEEEe
Q psy4523 78 QDTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~~ 96 (126)
..+++.++++|||.|.|.-
T Consensus 36 p~dA~~~Gi~~Gd~V~v~s 54 (110)
T PF01568_consen 36 PEDAAKLGIKDGDWVRVSS 54 (110)
T ss_dssp HHHHHHCT--TTCEEEEEE
T ss_pred HHHHHHhcCcCCCEEEEEe
Confidence 4678899999999988863
No 140
>KOG4225|consensus
Probab=43.25 E-value=15 Score=32.65 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=17.3
Q ss_pred CCCccccCCCCCCEEEEEee
Q psy4523 78 QDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~~~ 97 (126)
-+.+++|++.+||+|+|+.+
T Consensus 443 pqnedeLEl~egDii~VmeK 462 (489)
T KOG4225|consen 443 PQNEDELELREGDIIDVMEK 462 (489)
T ss_pred CCCchhheeccCCEEeeeec
Confidence 36788999999999999965
No 141
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=42.94 E-value=11 Score=25.87 Aligned_cols=18 Identities=22% Similarity=0.542 Sum_probs=15.5
Q ss_pred CCCccccCCCCCCEEEEE
Q psy4523 78 QDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~ 95 (126)
.++++++++++||.|.+.
T Consensus 41 ~~dA~~lgi~~Gd~V~v~ 58 (122)
T cd02791 41 PEDAARLGLKEGDLVRVT 58 (122)
T ss_pred HHHHHHcCCCCCCEEEEE
Confidence 468999999999998766
No 142
>cd02783 MopB_CT_2 The MopB_CT_2 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=41.40 E-value=11 Score=27.69 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=16.6
Q ss_pred CCCccccCCCCCCEEEEEe
Q psy4523 78 QDTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~~ 96 (126)
.++++.++++|||.|.|.-
T Consensus 38 p~dA~~~GI~dGd~V~v~s 56 (156)
T cd02783 38 PKTAKELGIKDGDWVWVES 56 (156)
T ss_pred HHHHHHcCCCCCCEEEEEc
Confidence 4789999999999998874
No 143
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=41.27 E-value=11 Score=25.70 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=16.3
Q ss_pred CCCccccCCCCCCEEEEEee
Q psy4523 78 QDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~~~ 97 (126)
.++++.|+++|||.|.|.-.
T Consensus 37 p~dA~~lgI~dGd~V~v~s~ 56 (112)
T cd02787 37 PDDIARLGLKAGDRVDLESA 56 (112)
T ss_pred HHHHHHhCCCCCCEEEEEec
Confidence 36689999999999988733
No 144
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=41.08 E-value=12 Score=25.92 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=16.7
Q ss_pred ecCCCCCccccCCCCCCEEEEE
Q psy4523 74 AINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 74 rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
.|.+ ++.+.++++|||.|.+.
T Consensus 33 ~i~p-~~A~~~gi~~Gd~V~v~ 53 (121)
T cd02794 33 WINP-LDAAARGIKDGDRVLVF 53 (121)
T ss_pred EECH-HHHHHcCCCCCCEEEEE
Confidence 3443 67999999999998776
No 145
>KOG1364|consensus
Probab=40.97 E-value=42 Score=28.87 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=51.1
Q ss_pred ccccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC---eec--CC
Q psy4523 3 EEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG---QAI--NE 77 (126)
Q Consensus 3 ~~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG---~rL--~~ 77 (126)
.|+++-.+.+..-.|.|+-.||+....+.-+++|.+.|...|..++ .|.....+.|.+.= +.+ ..
T Consensus 266 ~ep~~~~~~svvt~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~----------dg~~k~~FkLv~a~P~~k~l~~~~ 335 (356)
T KOG1364|consen 266 VEPKGDCDRSVVTSIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHM----------DGSDKKRFKLVQAIPASKTLDYGA 335 (356)
T ss_pred ecCCCCCCccceeEEEEecCCccHHHHhhccccHHHHHHHHHHHhh----------cccccccceeeecccchhhhhccc
Confidence 3444333334444488888899877777788999999999877763 56655556666543 222 24
Q ss_pred CCCccccCCCCCC
Q psy4523 78 QDTPSTLEMEEGD 90 (126)
Q Consensus 78 ~~TP~dL~MeDGD 90 (126)
+.|.+++||.+--
T Consensus 336 daT~~eaGL~nS~ 348 (356)
T KOG1364|consen 336 DATFKEAGLANSE 348 (356)
T ss_pred cchHHHhccCccc
Confidence 6788888877654
No 146
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=40.60 E-value=21 Score=28.33 Aligned_cols=15 Identities=27% Similarity=0.720 Sum_probs=13.1
Q ss_pred ccCCCCCCEEEEEee
Q psy4523 83 TLEMEEGDTIEIYQQ 97 (126)
Q Consensus 83 dL~MeDGD~Idv~~~ 97 (126)
.|+++|||.|.+.+.
T Consensus 202 ~l~l~dgd~v~i~i~ 216 (217)
T PRK14165 202 ELNLKDGDRVEVLVK 216 (217)
T ss_pred hcCCCCCCEEEEEEe
Confidence 589999999998875
No 147
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=40.59 E-value=46 Score=20.79 Aligned_cols=45 Identities=20% Similarity=0.413 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeecCCCCCccccCCCCCCEEEE
Q psy4523 33 KGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 33 ~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
....|..|++...++ .+++.. +|=+| +|++|. ++++ ++||+..-|
T Consensus 7 ~~~s~e~lL~~it~~-----------v~l~~g-Vr~lyt~~G~~V~---~l~~--l~dg~~yVa 53 (60)
T PF03607_consen 7 RFRSFEQLLDEITEK-----------VQLPSG-VRKLYTLDGKRVK---SLDE--LEDGGSYVA 53 (60)
T ss_dssp THSSHHHHHHHHHHS-----------SSSTTS--SEEEETTSSEES---SGGG--S-TTEEEEE
T ss_pred hhcCHHHHHHHHHhh-----------cCCCcc-cceEECCCCCEeC---CHHH--HCCCCEEEE
Confidence 456788888888888 666544 55555 799994 5666 788886544
No 148
>KOG2982|consensus
Probab=40.35 E-value=79 Score=27.45 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=47.9
Q ss_pred EEEEEeccCCEE-EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE---CCeecC-----CCCCccccCC
Q psy4523 16 NLKVLGQDNNVV-QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF---DGQAIN-----EQDTPSTLEM 86 (126)
Q Consensus 16 ~Ikv~~~~g~~v-~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f---dG~rL~-----~~~TP~dL~M 86 (126)
.+++........ ..-|..+-+.-.+|...-.. -|+.+..+++++ ||+.-. .++-.-.+.+
T Consensus 338 rvk~l~~~~~v~~s~~I~~~~TV~D~~~~Ld~~-----------VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkI 406 (418)
T KOG2982|consen 338 RVKALNSGPKVIASGLICMTRTVLDFMKILDPK-----------VGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKI 406 (418)
T ss_pred eeeeeccCCccccceEEEeehHHHHHHHHhccc-----------cccccceeEEEEEcccCccCCccccCCCCcceEEec
Confidence 455555433222 35555666778888888888 899999998887 676544 3445556779
Q ss_pred CCCCEEEEEe
Q psy4523 87 EEGDTIEIYQ 96 (126)
Q Consensus 87 eDGD~Idv~~ 96 (126)
||||.|.|..
T Consensus 407 edGDs~lvqe 416 (418)
T KOG2982|consen 407 EDGDSFLVQE 416 (418)
T ss_pred cCCCEeeeec
Confidence 9999987753
No 149
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=39.98 E-value=1e+02 Score=24.14 Aligned_cols=71 Identities=11% Similarity=0.233 Sum_probs=42.8
Q ss_pred CCCcEEEEEEeccCCEE----------EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccc--e---eEEEECCee-
Q psy4523 11 TDEHINLKVLGQDNNVV----------QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMS--T---VRFRFDGQA- 74 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v----------~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~--~---~rF~fdG~r- 74 (126)
.++.++|.+....+..+ .|.+... ..|.++.+.. .|+.+. . ++..-+|+.
T Consensus 65 ~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~---~tl~~ai~~A-----------GG~~~~~~~~~~i~~~~~g~~~ 130 (239)
T TIGR03028 65 KQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETA---GRVSDVLALA-----------GGVTPDGADVITLVREREGKIF 130 (239)
T ss_pred cCCEEEEEEEeccceEEEEEEEecCCceEEcCCC---CcHHHHHHHc-----------CCCCccCCCeEEEEEecCCeEE
Confidence 34567777765443332 2444444 5667777777 666543 2 222336655
Q ss_pred ---------cCCCCCccccCCCCCCEEEEE
Q psy4523 75 ---------INEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 75 ---------L~~~~TP~dL~MeDGD~Idv~ 95 (126)
+.......++-|++||+|-|-
T Consensus 131 ~~~idl~~l~~~g~~~~ni~L~~GD~I~V~ 160 (239)
T TIGR03028 131 RKQIDFPALFNPGGDNENILVAGGDIIYVD 160 (239)
T ss_pred EEEEEHHHHHhcCCCcCCcEEcCCCEEEEc
Confidence 234466788999999999764
No 150
>cd02779 MopB_CT_Arsenite-Ox This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of Arsenite oxidase (Arsenite-Ox) and related proteins. Arsenite oxidase oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin.
Probab=39.92 E-value=13 Score=25.67 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=16.0
Q ss_pred CCCccccCCCCCCEEEEEe
Q psy4523 78 QDTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~~ 96 (126)
.++++.++++|||.|.|.-
T Consensus 39 ~~dA~~lgi~~Gd~V~v~s 57 (115)
T cd02779 39 PEDAKREGLKNGDLVEVYN 57 (115)
T ss_pred HHHHHHcCCCCCCEEEEEe
Confidence 3689999999999988763
No 151
>cd02785 MopB_CT_4 The MopB_CT_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=39.68 E-value=13 Score=25.91 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=15.6
Q ss_pred CCCccccCCCCCCEEEEE
Q psy4523 78 QDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~ 95 (126)
.++.+.++++|||.|.|.
T Consensus 38 p~dA~~~gi~~Gd~V~v~ 55 (124)
T cd02785 38 PIDAAARGIAHGDLVEVY 55 (124)
T ss_pred HHHHHHcCCCCCCEEEEE
Confidence 478999999999998766
No 152
>cd02781 MopB_CT_Acetylene-hydratase The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=39.36 E-value=13 Score=25.78 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.5
Q ss_pred CCCccccCCCCCCEEEEE
Q psy4523 78 QDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~ 95 (126)
.++.+.++++|||.|.|.
T Consensus 39 p~dA~~~gi~~Gd~V~v~ 56 (130)
T cd02781 39 PETAAKLGIADGDWVWVE 56 (130)
T ss_pred HHHHHHcCCCCCCEEEEE
Confidence 468899999999998776
No 153
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.31 E-value=31 Score=24.27 Aligned_cols=21 Identities=29% Similarity=0.729 Sum_probs=17.4
Q ss_pred cccCCCCCCEEEEEeeecCCCc
Q psy4523 82 STLEMEEGDTIEIYQQQTGGFK 103 (126)
Q Consensus 82 ~dL~MeDGD~Idv~~~Q~GG~~ 103 (126)
+++++++|+-|..+++ .||+.
T Consensus 15 ~E~~l~~g~~vrffvR-yGG~~ 35 (95)
T COG4841 15 EELDLEEGNKVRFFVR-YGGCS 35 (95)
T ss_pred HhcCCCCCCEEEEEEE-EcCcc
Confidence 5789999999997776 78864
No 154
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=38.28 E-value=14 Score=25.37 Aligned_cols=18 Identities=28% Similarity=0.645 Sum_probs=15.5
Q ss_pred CCCccccCCCCCCEEEEE
Q psy4523 78 QDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~ 95 (126)
-++++.++++|||.|.|.
T Consensus 36 p~dA~~~gi~~Gd~V~v~ 53 (123)
T cd02778 36 PETAARLGIKDGDRVEVS 53 (123)
T ss_pred HHHHHHcCCCCCCEEEEE
Confidence 368899999999998776
No 155
>cd02777 MopB_CT_DMSOR-like The MopB_CT_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB hom
Probab=38.07 E-value=14 Score=25.81 Aligned_cols=18 Identities=11% Similarity=0.438 Sum_probs=15.5
Q ss_pred CCCccccCCCCCCEEEEE
Q psy4523 78 QDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~ 95 (126)
.++.+.|+++|||.|.|.
T Consensus 40 p~dA~~lgi~~Gd~V~v~ 57 (127)
T cd02777 40 PLDAAARGIKDGDIVRVF 57 (127)
T ss_pred HHHHHHcCCCCCCEEEEE
Confidence 378999999999988765
No 156
>KOG1639|consensus
Probab=38.04 E-value=71 Score=26.67 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=43.3
Q ss_pred EEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCc----cceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 29 FKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS----MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 29 fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~----~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
.-.+..+++..+.++...+- ..+. ..++|+.-.|+.|-+++|..+++...|++|-|.
T Consensus 17 ~~~s~~~ti~d~~~~~~~~~----------~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 17 KDLSGSETIDDLLKAISAKN----------LKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred ecCCCCCcHHHHHHHHHHhh----------hccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 34556788888888887762 2332 346666668999999999999999999888765
No 157
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=37.48 E-value=1.1e+02 Score=19.65 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=38.2
Q ss_pred EEEEecc---CCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCc--cceeEEEE------CCeecCCCCCccc
Q psy4523 17 LKVLGQD---NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS--MSTVRFRF------DGQAINEQDTPST 83 (126)
Q Consensus 17 Ikv~~~~---g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~--~~~~rF~f------dG~rL~~~~TP~d 83 (126)
|+|-..+ +.-..+.|.++++...+...-.++ .++. ++.+.+.- ..+.|.+++-|-.
T Consensus 2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k-----------~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~ 68 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKK-----------FGLDDDPEDYALVEVLGDGGLERLLLPDECPLQ 68 (87)
T ss_pred EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHH-----------hCCcCCcccEEEEEEECCceEEEEeCCCCChHH
Confidence 4454445 666789999999999999999999 6665 44555442 1235555666644
No 158
>KOG3483|consensus
Probab=36.61 E-value=1.4e+02 Score=20.56 Aligned_cols=76 Identities=16% Similarity=0.285 Sum_probs=55.8
Q ss_pred CCCcEEEEEEeccCCE---EEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccce-eEEEECCeecCCCCCccccCC
Q psy4523 11 TDEHINLKVLGQDNNV---VQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMST-VRFRFDGQAINEQDTPSTLEM 86 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~---v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~-~rF~fdG~rL~~~~TP~dL~M 86 (126)
.+.++..++.-...-+ ..+.|-..+||-.+.+.-++. ..++..+ -...-||.-|++.||....-+
T Consensus 10 ~g~kv~fk~tltsdpklpfkv~svpestpftavlkfaaee-----------fkvpaatsaiitndgiginpaq~agnvfl 78 (94)
T KOG3483|consen 10 RGSKVSFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEE-----------FKVPAATSAIITNDGIGINPAQTAGNVFL 78 (94)
T ss_pred ccceeEEEEEeccCCCCccceecCCCCCchHHHHHHHHHH-----------ccCCccceeEEecCccccCccccccceee
Confidence 4455555554322222 257788899999999988888 6676544 556668999999999999999
Q ss_pred CCCCEEEEEee
Q psy4523 87 EEGDTIEIYQQ 97 (126)
Q Consensus 87 eDGD~Idv~~~ 97 (126)
+.|.++....+
T Consensus 79 khgselr~ipr 89 (94)
T KOG3483|consen 79 KHGSELRIIPR 89 (94)
T ss_pred ccCCEEEeccc
Confidence 99998776644
No 159
>cd02782 MopB_CT_1 The MopB_CT_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=36.52 E-value=16 Score=25.52 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=15.4
Q ss_pred CCCccccCCCCCCEEEEE
Q psy4523 78 QDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~ 95 (126)
.++++.++++|||.|.+.
T Consensus 39 p~dA~~~gi~~Gd~V~v~ 56 (129)
T cd02782 39 PDDAAALGLADGDKVRVT 56 (129)
T ss_pred HHHHHHcCCCCCCEEEEE
Confidence 468999999999998765
No 160
>KOG1407|consensus
Probab=36.34 E-value=47 Score=27.92 Aligned_cols=92 Identities=22% Similarity=0.385 Sum_probs=56.9
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHH---HHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCC---CCCccccC
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLR---KLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINE---QDTPSTLE 85 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~---kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~---~~TP~dL~ 85 (126)
.++|-|++- .+|+ +|-+...+.+- .+=+..|.|+- .+...+++++.|.+||+.|.. +.-.+=..
T Consensus 190 snCicI~f~-p~Gr--yfA~GsADAlvSLWD~~ELiC~R~i-------sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 190 SNCICIEFD-PDGR--YFATGSADALVSLWDVDELICERCI-------SRLDWPVRTLSFSHDGRMLASASEDHFIDIAE 259 (313)
T ss_pred cceEEEEEC-CCCc--eEeeccccceeeccChhHhhhheee-------ccccCceEEEEeccCcceeeccCccceEEeEe
Confidence 567777773 4564 66666555443 44556777731 126668899999999999973 33444446
Q ss_pred CCCCCEEEEEeeecCCCcCCCceeeeccCCCCC
Q psy4523 86 MEEGDTIEIYQQQTGGFKQTPQLQIWHTESNML 118 (126)
Q Consensus 86 MeDGD~Idv~~~Q~GG~~~~~~~~~~~~~~~~~ 118 (126)
.|.||.+.=. |.-|--. -|-|||...-|
T Consensus 260 vetGd~~~eI--~~~~~t~---tVAWHPk~~LL 287 (313)
T KOG1407|consen 260 VETGDRVWEI--PCEGPTF---TVAWHPKRPLL 287 (313)
T ss_pred cccCCeEEEe--eccCCce---eEEecCCCcee
Confidence 7788865432 2222222 36899987655
No 161
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=36.10 E-value=70 Score=22.78 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=44.1
Q ss_pred CCcEEEEEEecc-C-----CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE-CCeecCCCCCcccc
Q psy4523 12 DEHINLKVLGQD-N-----NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF-DGQAINEQDTPSTL 84 (126)
Q Consensus 12 ~~~I~Ikv~~~~-g-----~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f-dG~rL~~~~TP~dL 84 (126)
.++|-|.|.-.. + ....|.|..+.++..++....++ .+++++.--|+| ++.....++|..+|
T Consensus 22 p~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~-----------l~l~~~~slfl~Vn~~~p~~~~~~~~l 90 (112)
T cd01611 22 PDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKR-----------IQLRPEKALFLFVNNSLPPTSATMSQL 90 (112)
T ss_pred CCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHH-----------hCCCccceEEEEECCccCCchhHHHHH
Confidence 356666665322 1 23468999999999999999999 788887766666 45444566777666
No 162
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=35.83 E-value=1.1e+02 Score=18.96 Aligned_cols=58 Identities=21% Similarity=0.401 Sum_probs=33.2
Q ss_pred EEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 18 KVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 18 kv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
+|...+|+...| ...++...+-.... .++..+.+-=..||+++.. +..+++||+|++.
T Consensus 2 ~v~lpdG~~~~~--~~g~T~~d~A~~I~-------------~~l~~~~~~A~Vng~~vdl-----~~~L~~~d~v~ii 59 (60)
T PF02824_consen 2 RVYLPDGSIKEL--PEGSTVLDVAYSIH-------------SSLAKRAVAAKVNGQLVDL-----DHPLEDGDVVEII 59 (60)
T ss_dssp EEEETTSCEEEE--ETTBBHHHHHHHHS-------------HHHHHCEEEEEETTEEEET-----TSBB-SSEEEEEE
T ss_pred EEECCCCCeeeC--CCCCCHHHHHHHHC-------------HHHHhheeEEEEcCEECCC-----CCCcCCCCEEEEE
Confidence 344478887774 44444443322222 2233445566678977765 3457899999875
No 163
>cd02784 MopB_CT_PHLH The MopB_CT_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding proteins. This CD is of the PHLH region homologous to the conserved molybdopterin-binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=35.63 E-value=16 Score=26.76 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=16.5
Q ss_pred CCCccccCCCCCCEEEEEee
Q psy4523 78 QDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~~~ 97 (126)
-++.+.++++|||.|.|.-.
T Consensus 44 P~dA~~lGI~dGD~V~V~s~ 63 (137)
T cd02784 44 PRTAEALGLLQGDVVRIRRG 63 (137)
T ss_pred HHHHHHcCCCCCCEEEEEeC
Confidence 47889999999999887643
No 164
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=35.36 E-value=23 Score=23.67 Aligned_cols=11 Identities=45% Similarity=1.020 Sum_probs=10.1
Q ss_pred eeEEEECCeec
Q psy4523 65 TVRFRFDGQAI 75 (126)
Q Consensus 65 ~~rF~fdG~rL 75 (126)
.+||-|+|..|
T Consensus 2 ~~RFdf~G~l~ 12 (73)
T PF08620_consen 2 ELRFDFDGNLL 12 (73)
T ss_pred CccccCCCCEe
Confidence 68999999999
No 165
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.10 E-value=38 Score=23.87 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=32.3
Q ss_pred CCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecC---------CCCC--ccccCCCCCCEEEEEeeecCC
Q psy4523 34 GTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAIN---------EQDT--PSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 34 tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~---------~~~T--P~dL~MeDGD~Idv~~~Q~GG 101 (126)
.+++..+.++-+.. ..-+....-|.-+|.-.. ++.- -++.-+||||+|.+.-..-||
T Consensus 29 ~~~vg~liD~~~~~-----------i~~p~~~sifie~g~lrpGiI~LINd~DWeLleke~y~ledgDiIvfistlHGg 96 (96)
T COG5131 29 GSSVGTLIDALRYF-----------IYAPTRDSIFIEHGELRPGIICLINDMDWELLEKERYPLEDGDIIVFISTLHGG 96 (96)
T ss_pred CcchhhHHHHHHHH-----------HhCCccceeeecCCCCcccEEEEEcCccHhhhhcccccCCCCCEEEEEecccCC
Confidence 56777788876664 333333333444443222 1111 244789999998877666555
No 166
>cd02788 MopB_CT_NDH-1_NuoG2-N7 MopB_CT_NDH-1_NuoG2-N7: C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain, is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups
Probab=34.97 E-value=17 Score=24.40 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=15.4
Q ss_pred CCCccccCCCCCCEEEEE
Q psy4523 78 QDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~ 95 (126)
.++.+.+++++||.|.+.
T Consensus 35 p~dA~~lGi~~Gd~V~v~ 52 (96)
T cd02788 35 PADAARLGLADGDLVEFS 52 (96)
T ss_pred HHHHHHcCCCCCCEEEEE
Confidence 468999999999988765
No 167
>PRK05388 argJ bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; Validated
Probab=34.82 E-value=1e+02 Score=26.89 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=38.4
Q ss_pred cCccceeEEEECCeecCCCCCccccC--------CCCCCEEEEEeeecCCCcCCCceeeeccC
Q psy4523 60 NLSMSTVRFRFDGQAINEQDTPSTLE--------MEEGDTIEIYQQQTGGFKQTPQLQIWHTE 114 (126)
Q Consensus 60 gl~~~~~rF~fdG~rL~~~~TP~dL~--------MeDGD~Idv~~~Q~GG~~~~~~~~~~~~~ 114 (126)
.++++.+.+.|+|..|-.+-.|.+.+ |+.+++|++.+++-.|.. ++..|..+
T Consensus 322 ~~d~~~v~i~~~~v~v~~~G~~~~~~~e~~~~~~m~~~~ei~I~vdL~~G~~---~~t~w~cD 381 (395)
T PRK05388 322 DFDPDRLDIYLGGVLVAKNGGPAPFYREEDASAYMKQEDEITIRVDLGLGDG---SATAWTCD 381 (395)
T ss_pred ccchhheEEEECCEEEEeCCCCCCCCcHHHHHHHhCCCCEEEEEEEeCCCCc---eEEEEccc
Confidence 45677888888888888777776554 766789999999766653 45578654
No 168
>cd02793 MopB_CT_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO.This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=34.31 E-value=18 Score=25.47 Aligned_cols=18 Identities=11% Similarity=0.484 Sum_probs=15.3
Q ss_pred CCCccccCCCCCCEEEEE
Q psy4523 78 QDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~ 95 (126)
.++.+.++++|||.|.|.
T Consensus 39 p~dA~~~gi~~Gd~V~v~ 56 (129)
T cd02793 39 PADAAARGIADGDIVRVF 56 (129)
T ss_pred HHHHHHcCCCCCCEEEEE
Confidence 366899999999998776
No 169
>PF06793 UPF0262: Uncharacterised protein family (UPF0262); InterPro: IPR008321 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.17 E-value=1.1e+02 Score=23.48 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=28.0
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhh
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILS 53 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~ 53 (126)
.+.+-|.+.++..+.--+-.-+||+++++-|-..|+||-+
T Consensus 62 RLvfdI~~e~~~~~~~~~LsL~PfRrvikDYf~ICeSYy~ 101 (158)
T PF06793_consen 62 RLVFDIRDEDGEPLATHHLSLTPFRRVIKDYFMICESYYE 101 (158)
T ss_pred EEEEEecCCCCCEeeEEEeccccHHHHHHHHHHHHHHHHH
Confidence 4455555555555543344558999999999999988776
No 170
>cd02776 MopB_CT_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. This CD (MopB_CT_Nitrate-R-NarG-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=33.68 E-value=19 Score=26.29 Aligned_cols=18 Identities=17% Similarity=0.531 Sum_probs=15.4
Q ss_pred CCccccCCCCCCEEEEEe
Q psy4523 79 DTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~ 96 (126)
++.+.++++|||.|.|.-
T Consensus 38 ~dA~~lgI~dGd~V~v~~ 55 (141)
T cd02776 38 KDAAELGIKDNDWVEVFN 55 (141)
T ss_pred HHHHHcCCCCCCEEEEEe
Confidence 668999999999988763
No 171
>cd02789 MopB_CT_FmdC-FwdD The MopB_FmdC-FwdD CD includes the C-terminus of subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC) and subunit D of tungsten formylmethanofuran dehydrogenase (FwdD), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding superfamily of proteins. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=33.32 E-value=19 Score=24.75 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=15.3
Q ss_pred CCCccccCCCCCCEEEEE
Q psy4523 78 QDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~ 95 (126)
.++.+.|+++|||.|.+.
T Consensus 37 p~dA~~lgi~~Gd~V~v~ 54 (106)
T cd02789 37 PEDYKLLGKPEGDKVKVT 54 (106)
T ss_pred HHHHHHcCCCCCCEEEEE
Confidence 467999999999998766
No 172
>cd02775 MopB_CT Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=33.30 E-value=19 Score=23.43 Aligned_cols=18 Identities=17% Similarity=0.519 Sum_probs=15.2
Q ss_pred CCCccccCCCCCCEEEEE
Q psy4523 78 QDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~ 95 (126)
..+.+.|+++|||.|.+.
T Consensus 29 ~~da~~lgl~~Gd~v~v~ 46 (101)
T cd02775 29 PEDAAALGIKDGDLVRVE 46 (101)
T ss_pred HHHHHHcCCCCCCEEEEE
Confidence 467889999999998766
No 173
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=32.91 E-value=27 Score=24.03 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=9.3
Q ss_pred cccCCCCCCEEEEEe
Q psy4523 82 STLEMEEGDTIEIYQ 96 (126)
Q Consensus 82 ~dL~MeDGD~Idv~~ 96 (126)
.++-|+|||+|.+..
T Consensus 69 K~YivqDGDIi~f~f 83 (84)
T PF06071_consen 69 KDYIVQDGDIIHFRF 83 (84)
T ss_dssp TT-B--TTEEEEEEE
T ss_pred CceeEeCCCEEEEEc
Confidence 467899999998753
No 174
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=32.66 E-value=1e+02 Score=20.03 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=20.4
Q ss_pred CCCcEEEEEEeccCCEEEEEecCCC
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIKKGT 35 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk~tt 35 (126)
.+....|.+.+.+|+.+.+.|.+.|
T Consensus 52 ~~g~yev~~~~~dG~~~ev~vD~~t 76 (83)
T PF13670_consen 52 DDGCYEVEARDKDGKKVEVYVDPAT 76 (83)
T ss_pred CCCEEEEEEEECCCCEEEEEEcCCC
Confidence 3456889989999999999998865
No 175
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=32.15 E-value=37 Score=20.18 Aligned_cols=19 Identities=26% Similarity=0.678 Sum_probs=14.1
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.+.-||+|.|.-+
T Consensus 8 ~~~dELs~~~Gd~i~v~~~ 26 (49)
T PF14604_consen 8 QDPDELSFKKGDVITVLEK 26 (49)
T ss_dssp SSTTB-EB-TTEEEEEEEE
T ss_pred CCcCEeeEcCCCEEEEEEe
Confidence 5678999999999999844
No 176
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=31.95 E-value=46 Score=24.14 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=33.7
Q ss_pred ccceeEEEECCeecCCCCCccccCCC-CCCEEEEEeeecCCCcC
Q psy4523 62 SMSTVRFRFDGQAINEQDTPSTLEME-EGDTIEIYQQQTGGFKQ 104 (126)
Q Consensus 62 ~~~~~rF~fdG~rL~~~~TP~dL~Me-DGD~Idv~~~Q~GG~~~ 104 (126)
+.+..+++..|+.--.-+...++... |+|.+.+.++|+||..+
T Consensus 55 SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg~aC 98 (111)
T COG0139 55 SRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGGPAC 98 (111)
T ss_pred EcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCCCcc
Confidence 56667788888877777777777665 89999999999887543
No 177
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=31.70 E-value=61 Score=20.49 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=16.6
Q ss_pred eEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 66 VRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 66 ~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
-.|..||+... .-+.++.++|||.|..
T Consensus 41 W~~~vNG~~~~--~ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 41 WMYYVNGESAN--VGAGSYKLKDGDKITW 67 (68)
T ss_dssp EEEEETTEE-S--S-CCC-B--TTEEEEE
T ss_pred eEEEECCEEhh--cCcceeEeCCCCEEEe
Confidence 45566888765 5788899999999975
No 178
>cd02780 MopB_CT_Tetrathionate_Arsenate-R This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of tetrathionate reductase, subunit A, (TtrA); respiratory arsenate As(V) reductase, catalytic subunit (ArrA); and other related proteins.
Probab=30.97 E-value=21 Score=25.51 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=15.5
Q ss_pred CCCccccCCCCCCEEEEE
Q psy4523 78 QDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~ 95 (126)
..+.+.++++|||.|.|.
T Consensus 36 p~dA~~lgI~~Gd~V~v~ 53 (143)
T cd02780 36 PEDAAKLGIKTGDRVRVV 53 (143)
T ss_pred HHHHHHcCCCCCCEEEEE
Confidence 468999999999998765
No 179
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=30.85 E-value=1.8e+02 Score=20.10 Aligned_cols=40 Identities=8% Similarity=0.189 Sum_probs=30.7
Q ss_pred EEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE
Q psy4523 19 VLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF 70 (126)
Q Consensus 19 v~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f 70 (126)
+....|+.--+.|.++.+|..|+..-++. .+...+ +.|.|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~-----------~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSEL-----------FGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHH-----------hCCCCc-eEEEE
Confidence 33445677779999999999999999999 666654 55555
No 180
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=30.39 E-value=38 Score=25.75 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=30.6
Q ss_pred CCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCC
Q psy4523 33 KGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDT 80 (126)
Q Consensus 33 ~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~T 80 (126)
|+.-...|+..|+-+ ..++.+.....+||++|.+.+-
T Consensus 23 Pt~vVe~liskfe~H-----------~kL~~~~~tVti~G~~Lege~K 59 (149)
T PF10787_consen 23 PTSVVEWLISKFELH-----------PKLDEENTTVTIDGKRLEGEDK 59 (149)
T ss_pred cHHHHHHHHHHheec-----------ccccccceEEEECCeecCchHH
Confidence 455677788888888 8888889999999999997664
No 181
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=30.18 E-value=47 Score=19.50 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=13.7
Q ss_pred cccCCCCCCEEEEEee
Q psy4523 82 STLEMEEGDTIEIYQQ 97 (126)
Q Consensus 82 ~dL~MeDGD~Idv~~~ 97 (126)
..++++.||.|++..+
T Consensus 17 ~~l~l~~Gd~v~i~~~ 32 (47)
T PF04014_consen 17 EKLGLKPGDEVEIEVE 32 (47)
T ss_dssp HHTTSSTTTEEEEEEE
T ss_pred HHcCCCCCCEEEEEEe
Confidence 4578999999999877
No 182
>PRK02853 hypothetical protein; Provisional
Probab=30.11 E-value=1.4e+02 Score=22.97 Aligned_cols=40 Identities=23% Similarity=0.384 Sum_probs=26.9
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhh
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILS 53 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~ 53 (126)
.+.+-|.+.++..+.--+-.-+||+.+++-|-..|+||-+
T Consensus 65 rLvfdI~~e~~~~~~~~~LsL~PfRrvvKDYf~ICeSYy~ 104 (161)
T PRK02853 65 RLVFDIRREDGEPVATHILSLTPFRRVVKDYFMICESYYQ 104 (161)
T ss_pred eeEEEecCCCCCeeeEEEeccccHHHHHHHHHHHHHHHHH
Confidence 3444455555555433333458999999999999988776
No 183
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=29.25 E-value=15 Score=22.56 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=16.8
Q ss_pred eEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 66 VRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 66 ~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
-..+.||+.++ ..+.-+..||+|.+
T Consensus 34 G~V~VNg~~~~----~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGELEN----RRGKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCEEcc----CCCCCCCCCCEEEe
Confidence 33455777654 34567899999875
No 184
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=29.21 E-value=83 Score=22.33 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=31.7
Q ss_pred eEEEECCeecCCCCCcccc-CCCCCCEEEEEeeecCCCcC
Q psy4523 66 VRFRFDGQAINEQDTPSTL-EMEEGDTIEIYQQQTGGFKQ 104 (126)
Q Consensus 66 ~rF~fdG~rL~~~~TP~dL-~MeDGD~Idv~~~Q~GG~~~ 104 (126)
..|+|-|+.+..+.+..++ |-.+--.|.|.+.+.|+++.
T Consensus 2 a~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~g~P 41 (98)
T PF11069_consen 2 AQLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQGPP 41 (98)
T ss_pred ceEEeccccccCCCcHHHhcCCCcceeEEEEeccCCCCCC
Confidence 4689999999999999887 55555579999999888773
No 185
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=28.79 E-value=1.3e+02 Score=17.56 Aligned_cols=54 Identities=15% Similarity=0.331 Sum_probs=32.1
Q ss_pred ccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 22 QDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 22 ~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
.+|.. +.+...+++..+.+... .++....+....+|+.+..+ --+.+||.|+++
T Consensus 6 ~~g~~--~~~~~~~t~~~~~~~~~-------------~~~~~~~va~~vng~~vdl~-----~~l~~~~~ve~v 59 (60)
T cd01668 6 PKGEI--IELPAGATVLDFAYAIH-------------TEIGNRCVGAKVNGKLVPLS-----TVLKDGDIVEII 59 (60)
T ss_pred CCCCE--EEcCCCCCHHHHHHHHC-------------hHhhhheEEEEECCEECCCC-----CCCCCCCEEEEE
Confidence 45553 45667777777555332 22333445566788776533 237889988865
No 186
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=28.33 E-value=21 Score=21.59 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=21.6
Q ss_pred ceeEEEECCeecCCCCCcc--ccCCCCCC-EEEEEe
Q psy4523 64 STVRFRFDGQAINEQDTPS--TLEMEEGD-TIEIYQ 96 (126)
Q Consensus 64 ~~~rF~fdG~rL~~~~TP~--dL~MeDGD-~Idv~~ 96 (126)
=+++|.|.|..|.-.-|.+ .+.+..|+ -|++.+
T Consensus 10 l~F~~~~rg~~l~v~i~~~~v~v~~~~g~~~l~i~v 45 (54)
T PF03633_consen 10 LSFRLRYRGHWLEVEITHEKVTVTLLSGDAPLTIKV 45 (54)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEESS--EEEEE
T ss_pred eEEEEEECCEEEEEEEECCEEEEEEccCCccEEEEE
Confidence 3788899999998655555 44566666 455443
No 187
>PF05681 Fumerase: Fumarate hydratase (Fumerase); InterPro: IPR004646 This entry represents various Fe-S type hydro-lyases, including the alpha subunit from both L-tartrate dehydratase (TtdA; 4.2.1.32 from EC) and class 1 fumarate hydratases (4.2.1.2 from EC), which includes both aerobic (FumA) and anaerobic (FumB) types []. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see IPR000362 from INTERPRO). Proteins in this group represent a subset of closely related proteins or modules, including the Escherichia coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this group is unknown. Fumarate hydratase (also known as fumarase) is a component of the citric acid cycle. In facultative anaerobes such as E. coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre [].; GO: 0016829 lyase activity
Probab=27.94 E-value=1.7e+02 Score=24.01 Aligned_cols=78 Identities=24% Similarity=0.258 Sum_probs=44.2
Q ss_pred ecc-CCE-EEEEecCCCcHH-HHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccc--cCCCCCCEEEEE
Q psy4523 21 GQD-NNV-VQFKIKKGTPLR-KLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPST--LEMEEGDTIEIY 95 (126)
Q Consensus 21 ~~~-g~~-v~fkIk~tt~l~-kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~d--L~MeDGD~Idv~ 95 (126)
+|| |-. +++++-..-++. .|.++..+-... ++....+.++.+.=-+..+.- .+.||.- +++-+||.+++.
T Consensus 58 CQDTG~~~~fv~~G~~~~~~g~l~~ai~~gv~~----a~~~~~LR~s~V~~pl~r~Nt-gdn~P~ii~~~~v~gd~l~i~ 132 (271)
T PF05681_consen 58 CQDTGIPVFFVEIGQDVPIEGDLEEAINEGVRK----AYKEGPLRPSVVSDPLTRKNT-GDNTPAIIHIEIVPGDKLEIT 132 (271)
T ss_pred ccCCCeEEEEEEECCCCCcChhHHHHHHHHHHH----HHhcCCCCccccCCccccccC-CCCCCceEEEEEcCCCEEEEE
Confidence 455 433 345666656655 455444443210 122233444444223333222 3478876 788899999999
Q ss_pred eeecCCCc
Q psy4523 96 QQQTGGFK 103 (126)
Q Consensus 96 ~~Q~GG~~ 103 (126)
+-..||++
T Consensus 133 ~~~KGgGs 140 (271)
T PF05681_consen 133 VLPKGGGS 140 (271)
T ss_pred EEecCCCc
Confidence 99999988
No 188
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=27.91 E-value=2e+02 Score=19.53 Aligned_cols=35 Identities=9% Similarity=0.189 Sum_probs=31.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC
Q psy4523 26 VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71 (126)
Q Consensus 26 ~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd 71 (126)
.+-+++.+..++..|-...+++ .++.....+|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~k-----------L~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQA-----------LPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHH-----------hcCChhhcEEEec
Confidence 4668899999999999999999 8888888999884
No 189
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=27.45 E-value=54 Score=19.60 Aligned_cols=17 Identities=35% Similarity=0.802 Sum_probs=13.7
Q ss_pred CCccccCCCCCCEEEEE
Q psy4523 79 DTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~ 95 (126)
.+|.+|.++-||+|.|.
T Consensus 11 ~~~~~Ls~~~Gd~i~v~ 27 (55)
T PF07653_consen 11 EDPDELSFKKGDVIEVL 27 (55)
T ss_dssp SSTTB-EB-TTEEEEEE
T ss_pred CCCCceEEecCCEEEEE
Confidence 67888999999999998
No 190
>PF14365 DUF4409: Domain of unknown function (DUF4409)
Probab=27.34 E-value=33 Score=24.54 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=8.7
Q ss_pred CCCCCEEEEE
Q psy4523 86 MEEGDTIEIY 95 (126)
Q Consensus 86 MeDGD~Idv~ 95 (126)
=+|||+|||+
T Consensus 4 s~dGdi~DCV 13 (117)
T PF14365_consen 4 SPDGDIIDCV 13 (117)
T ss_pred CCCCCeEeCE
Confidence 3799999998
No 191
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=25.64 E-value=47 Score=20.23 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=15.5
Q ss_pred EECCeecCCCCCccccCCCCCCEEEE
Q psy4523 69 RFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 69 ~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
+.||.+|.. -....|.+||+|.+
T Consensus 45 ~vng~~l~~---~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 45 FVNGQRLGP---GEPVPLKDGDIIRF 67 (68)
T ss_dssp EETTEEESS---TSEEEE-TTEEEEE
T ss_pred EECCEEcCC---CCEEECCCCCEEEc
Confidence 448888887 33456789998864
No 192
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=25.39 E-value=1e+02 Score=17.17 Aligned_cols=20 Identities=25% Similarity=0.637 Sum_probs=17.1
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
..+.+|.++-||.|.+.-..
T Consensus 14 ~~~~~l~~~~Gd~v~v~~~~ 33 (58)
T smart00326 14 QDPDELSFKKGDIITVLEKS 33 (58)
T ss_pred CCCCCCCCCCCCEEEEEEcC
Confidence 56788999999999999774
No 193
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=25.32 E-value=2.9e+02 Score=21.89 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=33.2
Q ss_pred cEEEEEEecc---CCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE
Q psy4523 14 HINLKVLGQD---NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF 70 (126)
Q Consensus 14 ~I~Ikv~~~~---g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f 70 (126)
+|.|++.... ...+.+.+.+..+...|-++.+++ .|+++..+||+=
T Consensus 176 rv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~-----------l~~dP~~lr~~~ 224 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEH-----------LNVDPEHLRFFT 224 (249)
T ss_dssp EEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHH-----------HTS-GGGEEEE-
T ss_pred eEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHH-----------HCCChHHEEEEE
Confidence 4667776533 236789999999999999999999 999999999983
No 194
>PHA01623 hypothetical protein
Probab=25.29 E-value=55 Score=20.51 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.0
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH
Q psy4523 25 NVVQFKIKKGTPLRKLMNAYCER 47 (126)
Q Consensus 25 ~~v~fkIk~tt~l~kL~~~y~~~ 47 (126)
..+.|.|+-+..+.+-++.||..
T Consensus 12 k~~r~sVrldeel~~~Ld~y~~~ 34 (56)
T PHA01623 12 QKAVFGIYMDKDLKTRLKVYCAK 34 (56)
T ss_pred cceeEEEEeCHHHHHHHHHHHHH
Confidence 34678888899999999999999
No 195
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=25.07 E-value=2.3e+02 Score=19.42 Aligned_cols=50 Identities=12% Similarity=0.262 Sum_probs=35.9
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc-ceeEEEE---CCeecC
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM-STVRFRF---DGQAIN 76 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~-~~~rF~f---dG~rL~ 76 (126)
|+||+.- .|....+.+.+..++..|.+...+. ..... ..+++.| +|..+.
T Consensus 1 i~~K~~y-~gdi~it~~d~~~s~e~L~~~v~~~-----------c~~~~~q~ft~kw~DEEGDp~t 54 (83)
T cd06404 1 VRVKAAY-NGDIMITSIDPSISLEELCNEVRDM-----------CRFHNDQPFTLKWIDEEGDPCT 54 (83)
T ss_pred CeEEEEe-cCcEEEEEcCCCcCHHHHHHHHHHH-----------hCCCCCCcEEEEEECCCCCcee
Confidence 4566654 5788889999999999999999999 44544 3566666 254444
No 196
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=24.89 E-value=51 Score=21.83 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=14.4
Q ss_pred CCCCccccCCCCCCEEEEE
Q psy4523 77 EQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 77 ~~~TP~dL~MeDGD~Idv~ 95 (126)
...-+.+.-|+|||+|++.
T Consensus 57 ~~~vg~~~~L~dgDvV~Ii 75 (76)
T cd01669 57 GRRVGEDYELKHRDVIKIV 75 (76)
T ss_pred CEEeCCCcEecCCCEEEEe
Confidence 3445567789999999875
No 197
>KOG2086|consensus
Probab=24.58 E-value=2.2e+02 Score=24.74 Aligned_cols=63 Identities=10% Similarity=0.138 Sum_probs=42.8
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEE---ECCeecC-CCCCccccCCCC
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFR---FDGQAIN-EQDTPSTLEMEE 88 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~---fdG~rL~-~~~TP~dL~MeD 88 (126)
..|.|++ .||..+..+++-+.++..|....+.. ..-.....-.+ |=-+.|. +++|.++.++.+
T Consensus 306 TsIQIRL--anG~RlV~~fN~sHTv~DIR~fI~~a-----------Rp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~N 372 (380)
T KOG2086|consen 306 TSIQIRL--ANGTRLVLKFNHSHTVSDIREFIDTA-----------RPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLN 372 (380)
T ss_pred ceEEEEe--cCCceeeeeccCcccHHHHHHHHHhc-----------CCCCcCCceeeeecCCCcccCCcchhHHhccchh
Confidence 3566666 78888888888899999999998877 44433322222 3345555 468888887765
No 198
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=24.30 E-value=2.8e+02 Score=20.04 Aligned_cols=72 Identities=17% Similarity=0.106 Sum_probs=38.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhh----hhhh-----hhhh-hccC-ccceeEEEECCee-cCCCCCccccCCCCCCEE
Q psy4523 25 NVVQFKIKKGTPLRKLMNAYCERCV----SILS-----VLIT-LQNL-SMSTVRFRFDGQA-INEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 25 ~~v~fkIk~tt~l~kL~~~y~~~~~----~~~~-----~~~~-~~gl-~~~~~rF~fdG~r-L~~~~TP~dL~MeDGD~I 92 (126)
.++++-.=++.+|+.|-....+... ..++ |-+. ..|. ....+--.+.|.+ -.++.|.+++...-||.|
T Consensus 37 ~elqIYtW~d~TLrEL~~Lik~~~~~~r~~~tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iGDyi 116 (120)
T PF06487_consen 37 NELQIYTWMDATLRELADLIKDVNPPARRRGTRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIGDYI 116 (120)
T ss_dssp TEEEEEE-TT-BHHHHHHHHHHH-HHHHSTT-EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--TT-EE
T ss_pred CeeEEEEcccCCHHHHHHHHHHhCcccCCCCCEEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcccCCEE
Confidence 5778888889999999887776421 0000 1000 0011 1122333334444 467899999999999999
Q ss_pred EEEe
Q psy4523 93 EIYQ 96 (126)
Q Consensus 93 dv~~ 96 (126)
+|-+
T Consensus 117 dvaI 120 (120)
T PF06487_consen 117 DVAI 120 (120)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9864
No 199
>KOG4146|consensus
Probab=24.25 E-value=80 Score=22.46 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=15.2
Q ss_pred cccCCCCCCEEEEEeeecCC
Q psy4523 82 STLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 82 ~dL~MeDGD~Idv~~~Q~GG 101 (126)
+++.+||||.|-+.-..-||
T Consensus 82 edy~ledgD~ivfiSTlHGg 101 (101)
T KOG4146|consen 82 EDYPLEDGDHIVFISTLHGG 101 (101)
T ss_pred cccCcccCCEEEEEEeccCC
Confidence 56789999988776666554
No 200
>PF03072 DUF237: MG032/MG096/MG288 family 1; InterPro: IPR004306 This domain is found entirely in Mycoplasma pneumoniae proteins of unknown function. Another related domain (IPR004319 from INTERPRO) is found entirely in mycoplasmal proteins of the MG032/MG096/MG288 family and both domains often occur together.
Probab=23.53 E-value=3.2e+02 Score=20.48 Aligned_cols=53 Identities=25% Similarity=0.450 Sum_probs=35.8
Q ss_pred CCcHHHHHHHHHHHhhhhhhhhhhhccCccc-----eeEEEECCee----cCCCCCcccc-CCCCCCEEEEEee
Q psy4523 34 GTPLRKLMNAYCERCVSILSVLITLQNLSMS-----TVRFRFDGQA----INEQDTPSTL-EMEEGDTIEIYQQ 97 (126)
Q Consensus 34 tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~-----~~rF~fdG~r----L~~~~TP~dL-~MeDGD~Idv~~~ 97 (126)
.-.+.-..-++|.+ .|++.+ .+.|.|||.. +..-++|-++ ..+|.|.+.+.++
T Consensus 66 ~y~l~ww~~~~a~~-----------ggIPg~WkGkm~vk~~~DG~vp~w~~~k~dypgs~f~F~d~~kLLFt~H 128 (137)
T PF03072_consen 66 SYGLKWWTWAFAKR-----------GGIPGSWKGKMNVKFIFDGDVPSWIVGKPDYPGSLFQFTDKDKLLFTPH 128 (137)
T ss_pred EEeeehHHHHHHHh-----------CCCCCcccceEEEEEEEcccccceeecCCCCCCceeeecccceEEEEee
Confidence 34455667777777 888755 7999999974 3345666665 6777676666544
No 201
>COG5569 Uncharacterized conserved protein [Function unknown]
Probab=23.45 E-value=69 Score=23.04 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=18.8
Q ss_pred cCCCCCCEEEEEeeecCCCcCC
Q psy4523 84 LEMEEGDTIEIYQQQTGGFKQT 105 (126)
Q Consensus 84 L~MeDGD~Idv~~~Q~GG~~~~ 105 (126)
-+++.||-|++..++.+|-...
T Consensus 82 sglKeGdkV~fvferv~gk~tv 103 (108)
T COG5569 82 SGLKEGDKVEFVFERVNGKLTV 103 (108)
T ss_pred hccccCCcEEEEEEeeCCEEEE
Confidence 3789999999999999987643
No 202
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=22.82 E-value=1.2e+02 Score=19.22 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=30.1
Q ss_pred ccCccceeEEEECCeecCCCCCcc-cc-CCCCCCEEEEEeee
Q psy4523 59 QNLSMSTVRFRFDGQAINEQDTPS-TL-EMEEGDTIEIYQQQ 98 (126)
Q Consensus 59 ~gl~~~~~rF~fdG~rL~~~~TP~-dL-~MeDGD~Idv~~~Q 98 (126)
.|+.+..+-+.+||.++....... -+ ....|+.|.+.+..
T Consensus 30 aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R 71 (82)
T PF13180_consen 30 AGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLR 71 (82)
T ss_dssp TTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEE
T ss_pred CCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence 789999999999999995443332 22 67899999988875
No 203
>TIGR02609 doc_partner putative addiction module antidote. Members of this protein family are putative addiction module antidote proteins that appear recurringly in two-gene operons with members of the Doc (death-on-curing) family TIGR01550. Members of this family contain a SpoVT/AbrB-like domain (pfam04014). Note that the gene pairs with a member of this family tend to be found on bacterial chromosomes, not on plasmids.
Probab=22.70 E-value=71 Score=20.80 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=13.6
Q ss_pred ccccCCCCCCEEEEEee
Q psy4523 81 PSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 81 P~dL~MeDGD~Idv~~~ 97 (126)
.+.|++..||.|++..+
T Consensus 19 ~~~lgl~~Gd~v~v~~~ 35 (74)
T TIGR02609 19 LESLGLKEGDTLYVDEE 35 (74)
T ss_pred HHHcCcCCCCEEEEEEE
Confidence 45699999999987554
No 204
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=22.63 E-value=1.3e+02 Score=21.40 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=22.4
Q ss_pred cceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523 63 MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 63 ~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~ 96 (126)
.+..+..+||.+..++.+ .+.||+|++..
T Consensus 31 ~~~GrV~vNG~~aKpS~~-----VK~GD~l~i~~ 59 (100)
T COG1188 31 IEGGRVKVNGQRAKPSKE-----VKVGDILTIRF 59 (100)
T ss_pred HHCCeEEECCEEcccccc-----cCCCCEEEEEe
Confidence 456788999999976554 57899988874
No 205
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=22.51 E-value=2.8e+02 Score=19.43 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=40.1
Q ss_pred CcEEEEEEeccCC------EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE-CCeecCCCCCcccc
Q psy4523 13 EHINLKVLGQDNN------VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF-DGQAINEQDTPSTL 84 (126)
Q Consensus 13 ~~I~Ikv~~~~g~------~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f-dG~rL~~~~TP~dL 84 (126)
++|-|-|.-..+. ...|-|..+.++..++....++ ..+++++--|+| ++..+..+.|..++
T Consensus 15 ~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~r-----------l~l~~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 15 DKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKR-----------LQLSPEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp TEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHH-----------TT--TTS-EEEEBTTBESSTTSBHHHH
T ss_pred CccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhh-----------hcCCCCceEEEEEcCcccchhhHHHHH
Confidence 4566666532221 1358899999999999999999 778776644554 67666667777665
No 206
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=22.46 E-value=89 Score=21.04 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=28.8
Q ss_pred ccceeEEEECCeecCCCCCccccCCC-CCCEEEEEeeecCC
Q psy4523 62 SMSTVRFRFDGQAINEQDTPSTLEME-EGDTIEIYQQQTGG 101 (126)
Q Consensus 62 ~~~~~rF~fdG~rL~~~~TP~dL~Me-DGD~Idv~~~Q~GG 101 (126)
+.+.-+++..|+.=-..+-..++-+. |+|.|.+.++|.|+
T Consensus 23 SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 23 SRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp ETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred EccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 45556788888777677777777665 88999999999998
No 207
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=22.38 E-value=1.6e+02 Score=23.04 Aligned_cols=55 Identities=18% Similarity=0.310 Sum_probs=41.2
Q ss_pred EEecCC-CcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecC----CCCCccccCCCCCCEEEE
Q psy4523 29 FKIKKG-TPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAIN----EQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 29 fkIk~t-t~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~----~~~TP~dL~MeDGD~Idv 94 (126)
+.|.+. .++..|...|.+. +-.....+||...|.-+- .+.+.-.+-.+-||.|.|
T Consensus 71 vsv~~~~pk~del~akF~~E-----------H~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~v 130 (181)
T COG1791 71 VSVSPSNPKLDELRAKFLQE-----------HLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISV 130 (181)
T ss_pred EEeCCCCccHHHHHHHHHHH-----------hccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEec
Confidence 555553 4577788888888 777788999999998765 344666788888998776
No 208
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=21.82 E-value=2e+02 Score=21.85 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=39.8
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC---ccceeEEEECCeecCCCCCcccc
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL---SMSTVRFRFDGQAINEQDTPSTL 84 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl---~~~~~rF~fdG~rL~~~~TP~dL 84 (126)
.|+++| +|..+.+.+.+.++|..+.+.. ..- .+..|- .-.....++||+.+..-.+|.--
T Consensus 8 ~i~~~v---NG~~~~~~~~~~~~Ll~~LR~~-glt-------gtK~GC~~G~CGACtVlvdg~~v~SCl~~a~~ 70 (159)
T PRK09908 8 TIECTI---NGMPFQLHAAPGTPLSELLREQ-GLL-------SVKQGCCVGECGACTVLVDGTAIDSCLYLAAW 70 (159)
T ss_pred eEEEEE---CCEEEEEecCCCCcHHHHHHHc-CCC-------CCCCCcCCCCCCCcEEEECCcEeehhHhhHHH
Confidence 477776 7888889999999999887753 330 111111 13356677899998877776543
No 209
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=21.43 E-value=2.6e+02 Score=18.68 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=36.8
Q ss_pred ccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcccee-EEEECCeecCCCCC
Q psy4523 22 QDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTV-RFRFDGQAINEQDT 80 (126)
Q Consensus 22 ~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~-rF~fdG~rL~~~~T 80 (126)
.||....+.+++..+++.+...-|++ .|+..+.+ .|+..|+..-+.+|
T Consensus 7 Pdg~~T~V~vrpG~ti~d~L~kllek-----------Rgl~~~~~~vf~~g~~k~l~~~q 55 (73)
T cd01817 7 PDGSTTVVPTRPGESIRDLLSGLCEK-----------RGINYAAVDLFLVGGDKPLVLDQ 55 (73)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHH-----------cCCChhHEEEEEecCCcccccCC
Confidence 67888889999999999999999999 99987754 45554434334444
No 210
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=21.42 E-value=2.9e+02 Score=22.14 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=45.1
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhh--hhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCV--SILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD 90 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~--~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD 90 (126)
..|+|.| +|..+.+.+.+.++|............ ..|. .|. -.....++||+++....|+. -+-||.
T Consensus 50 ~~i~~~V---NG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~-----~G~-CGACTVlVdG~~v~SCl~la--~~~~G~ 118 (217)
T PRK11433 50 SPVTLKV---NGKTEQLEVDTRTTLLDALREHLHLTGTKKGCD-----HGQ-CGACTVLVNGRRLNACLTLA--VMHQGA 118 (217)
T ss_pred ceEEEEE---CCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCC-----CCC-cCceEEEECCEEeeeeeeeh--hhcCCC
Confidence 3466666 677888889999998876665333200 1111 221 33566788999998877775 345676
Q ss_pred EEEEE
Q psy4523 91 TIEIY 95 (126)
Q Consensus 91 ~Idv~ 95 (126)
.|.=.
T Consensus 119 ~ItTi 123 (217)
T PRK11433 119 EITTI 123 (217)
T ss_pred EEEEe
Confidence 55544
No 211
>KOG3309|consensus
Probab=21.19 E-value=1.9e+02 Score=22.27 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=26.7
Q ss_pred CCCcEEEEEEeccCCEEEEEecCCCcHHHHHH
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMN 42 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~ 42 (126)
..+.|+|..+..||.++.++.+-.+.+-.+--
T Consensus 40 ~~e~i~Itfv~~dG~~~~i~g~vGdtlLd~ah 71 (159)
T KOG3309|consen 40 KVEDIKITFVDPDGEEIKIKGKVGDTLLDAAH 71 (159)
T ss_pred CCceEEEEEECCCCCEEEeeeecchHHHHHHH
Confidence 44559999999999999999999988876543
No 212
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=21.07 E-value=2.4e+02 Score=19.33 Aligned_cols=55 Identities=22% Similarity=0.145 Sum_probs=31.6
Q ss_pred cceeEEEECCeecCCCC--------CccccCCCCCCEEEEEeeecCCCcCCCceeeeccCCCC
Q psy4523 63 MSTVRFRFDGQAINEQD--------TPSTLEMEEGDTIEIYQQQTGGFKQTPQLQIWHTESNM 117 (126)
Q Consensus 63 ~~~~rF~fdG~rL~~~~--------TP~dL~MeDGD~Idv~~~Q~GG~~~~~~~~~~~~~~~~ 117 (126)
.+..++..||+.|-+.. ....+.|+.|....+.++-..+......-..|..+...
T Consensus 67 ~~~~~l~Idg~~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~~~~~~l~w~~~~~~ 129 (136)
T smart00758 67 DDGARLWIDGKLVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGTGGLLKLGWTTPDAA 129 (136)
T ss_pred CCcEEEEECCcEEEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCCCEEEEEEEECCCCC
Confidence 45688999999887643 33447788887655554422222221223456665543
No 213
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=21.07 E-value=3.5e+02 Score=19.90 Aligned_cols=65 Identities=11% Similarity=0.193 Sum_probs=42.6
Q ss_pred ecC-CCcHHHHHHHHHHHhhh--hhhh----hhh-------hccCccceeEEEECCe---ec---CCCCCccccCCCCCC
Q psy4523 31 IKK-GTPLRKLMNAYCERCVS--ILSV----LIT-------LQNLSMSTVRFRFDGQ---AI---NEQDTPSTLEMEEGD 90 (126)
Q Consensus 31 Ik~-tt~l~kL~~~y~~~~~~--~~~~----~~~-------~~gl~~~~~rF~fdG~---rL---~~~~TP~dL~MeDGD 90 (126)
|.- +++.+.|++..++..-. .+.| .+. .+|--...+...+++. -| .++.|..++|++++-
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 554 88999999998888531 1121 111 4444455555555433 33 578899999999998
Q ss_pred EEEEE
Q psy4523 91 TIEIY 95 (126)
Q Consensus 91 ~Idv~ 95 (126)
+|-++
T Consensus 102 EiSfF 106 (122)
T PF10209_consen 102 EISFF 106 (122)
T ss_pred eeeee
Confidence 88877
No 214
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=20.90 E-value=2.6e+02 Score=18.38 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=15.4
Q ss_pred ECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 70 FDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 70 fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
|+|+++. .+..|+|||+|+++
T Consensus 54 ~~gq~Vg-----l~~~L~d~DvVeI~ 74 (75)
T cd01666 54 HSPQRVG-----LDHVLEDEDVVQIV 74 (75)
T ss_pred CCCeECC-----CCCEecCCCEEEEe
Confidence 4666655 45678999999876
No 215
>TIGR00120 ArgJ glutamate N-acetyltransferase/amino-acid acetyltransferase. This enzyme can acetylate Glu to N-acetyl-Glu by deacetylating N-2-acetyl-ornithine into ornithine; the two halves of this reaction represent the first and fifth steps in the synthesis of Arg (or citrulline) from Glu by way of ornithine (EC 2.3.1.35). In Bacillus stearothermophilus, but not in Thermus thermophilus HB27, the enzyme is bifunctional and can also use acetyl-CoA to acetylate Glu (EC 2.3.1.1).
Probab=20.07 E-value=2.8e+02 Score=24.29 Aligned_cols=52 Identities=21% Similarity=0.299 Sum_probs=36.7
Q ss_pred cCccceeEEEECC----eecCCCCCccccC--------CCCCCEEEEEeeecCCCcCCCceeeeccC
Q psy4523 60 NLSMSTVRFRFDG----QAINEQDTPSTLE--------MEEGDTIEIYQQQTGGFKQTPQLQIWHTE 114 (126)
Q Consensus 60 gl~~~~~rF~fdG----~rL~~~~TP~dL~--------MeDGD~Idv~~~Q~GG~~~~~~~~~~~~~ 114 (126)
.++++.+.+.|+| ..|-.+-.|.+.+ |+.+++|++.+++-.|.. ++..|..+
T Consensus 327 ~~d~~~v~i~~g~~~~~v~v~~~G~~~~~~e~~~~~~~l~~~~ei~I~vdLg~G~~---~~~~w~cD 390 (404)
T TIGR00120 327 DVDPENVSVILGDNSEEVVLVDNGVPLEFEETSRASEIMLESDEIEIVVDLGTGDG---AGTAWGCD 390 (404)
T ss_pred ccchhhEEEEECCccceEEEEeCCCCCCCCHHHHHHHHhcCCCEEEEEEEeCCCCc---eEEEEccc
Confidence 4567788888888 7776665554433 555788999999876653 56688764
Done!