Query psy4523
Match_columns 126
No_of_seqs 115 out of 529
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:21:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kyd_D Small ubiquitin-related 100.0 1.4E-29 4.9E-34 181.9 10.7 81 9-100 35-115 (115)
2 2eke_C Ubiquitin-like protein 100.0 3.5E-29 1.2E-33 177.2 11.5 89 1-101 18-106 (106)
3 2d07_B Ubiquitin-like protein 100.0 1.3E-28 4.3E-33 169.7 10.6 81 10-101 13-93 (93)
4 2io0_B Small ubiquitin-related 100.0 1.5E-28 5.1E-33 169.3 10.9 83 12-105 3-85 (91)
5 2io1_B Small ubiquitin-related 100.0 2.2E-28 7.6E-33 169.0 10.6 85 10-105 3-87 (94)
6 1wz0_A Ubiquitin-like protein 100.0 2.3E-28 7.8E-33 172.2 10.2 83 10-103 20-102 (104)
7 3tix_A Ubiquitin-like protein 99.9 6.9E-28 2.4E-32 186.9 9.1 90 3-104 46-135 (207)
8 2l76_A Nfatc2-interacting prot 99.9 2E-27 6.9E-32 165.7 10.4 79 7-97 14-92 (95)
9 2k8h_A Small ubiquitin protein 99.9 1.7E-27 5.8E-32 169.5 7.5 86 7-103 19-104 (110)
10 3pge_A SUMO-modified prolifera 99.9 5.7E-27 2E-31 181.8 11.1 89 3-103 18-106 (200)
11 2jxx_A Nfatc2-interacting prot 99.9 1.6E-26 5.4E-31 161.5 9.6 76 9-95 20-96 (97)
12 3v7o_A Minor nucleoprotein VP3 99.9 4.5E-28 1.5E-32 190.1 0.4 105 3-119 10-118 (227)
13 1wm3_A Ubiquitin-like protein 99.9 9.3E-26 3.2E-30 148.1 9.5 72 14-96 1-72 (72)
14 3a4r_A Nfatc2-interacting prot 99.9 1.4E-25 4.7E-30 150.1 10.0 76 9-95 2-78 (79)
15 3uf8_A Ubiquitin-like protein 99.9 4.4E-24 1.5E-28 165.1 10.5 89 4-104 11-99 (209)
16 4da1_A Protein phosphatase 1K, 99.9 3.2E-25 1.1E-29 183.1 0.0 90 4-105 20-109 (389)
17 3ix6_A TS, tsase, thymidylate 99.9 1E-24 3.5E-29 181.5 0.0 91 3-105 10-100 (360)
18 3goe_A DNA repair protein RAD6 99.8 2.4E-20 8.1E-25 126.2 9.9 74 13-97 8-82 (82)
19 1wyw_B Ubiquitin-like protein 99.8 2.1E-19 7.3E-24 123.1 9.8 87 4-101 11-97 (97)
20 2uyz_B Small ubiquitin-related 99.8 1.1E-18 3.8E-23 114.0 9.3 78 13-101 2-79 (79)
21 3dbh_I NEDD8; cell cycle, acti 99.5 8.3E-14 2.9E-18 91.8 10.4 83 8-101 6-88 (88)
22 3n3k_B Ubiquitin; hydrolase, p 99.5 1.3E-13 4.5E-18 90.1 9.5 80 13-103 2-81 (85)
23 3mtn_B UBA80, ubcep1, ubiquiti 99.5 4.8E-13 1.6E-17 87.3 10.4 80 13-103 2-81 (85)
24 4hcn_B Polyubiquitin, ubiquiti 99.5 3.3E-13 1.1E-17 92.0 9.8 82 9-101 17-98 (98)
25 1ndd_A NEDD8, protein (ubiquit 99.5 4.8E-13 1.6E-17 85.2 9.9 76 15-101 1-76 (76)
26 3a9j_A Ubiquitin; protein comp 99.5 6.2E-13 2.1E-17 84.7 10.4 76 15-101 1-76 (76)
27 3phx_B Ubiquitin-like protein 99.4 1.2E-12 4.1E-17 85.0 10.8 77 13-100 3-79 (79)
28 1wh3_A 59 kDa 2'-5'-oligoadeny 99.4 7.8E-13 2.7E-17 87.2 9.8 80 12-102 5-84 (87)
29 3k9o_B Ubiquitin, UBB+1; E2-25 99.4 9.2E-13 3.2E-17 88.5 10.3 80 15-105 2-81 (96)
30 4fbj_B NEDD8; effector-HOST ta 99.4 1.5E-12 5.1E-17 87.2 9.8 83 15-108 1-83 (88)
31 3vdz_A Ubiquitin-40S ribosomal 99.4 1.9E-12 6.4E-17 90.5 10.3 78 13-101 34-111 (111)
32 1ttn_A DC-UBP, dendritic cell- 99.4 1.7E-12 5.7E-17 89.9 9.0 89 4-103 13-101 (106)
33 1wy8_A NP95-like ring finger p 99.4 7E-12 2.4E-16 83.1 10.9 82 11-103 4-87 (89)
34 3v6c_B Ubiquitin; structural g 99.4 7.3E-12 2.5E-16 83.8 11.1 79 9-98 12-90 (91)
35 1sif_A Ubiquitin; hydrophobic 99.4 3.6E-12 1.2E-16 85.3 9.5 78 14-102 9-86 (88)
36 2ojr_A Ubiquitin; lanthide-bin 99.4 6E-12 2E-16 87.7 10.8 78 13-101 34-111 (111)
37 2hj8_A Interferon-induced 17 k 99.4 2.8E-12 9.5E-17 85.7 8.2 80 13-103 3-82 (88)
38 1yx5_B Ubiquitin; proteasome, 99.3 1E-11 3.4E-16 84.2 10.5 79 15-104 1-79 (98)
39 2l7r_A Ubiquitin-like protein 99.3 4.7E-12 1.6E-16 85.7 8.4 77 12-101 17-93 (93)
40 1wx8_A Riken cDNA 4931431F19; 99.3 8.6E-12 2.9E-16 84.1 8.7 81 11-103 14-94 (96)
41 2dzi_A Ubiquitin-like protein 99.3 1.7E-11 5.9E-16 79.2 9.8 78 9-97 2-79 (81)
42 4dwf_A HLA-B-associated transc 99.3 2.6E-11 9E-16 80.5 11.0 80 12-103 3-82 (90)
43 1j8c_A Ubiquitin-like protein 99.3 3.6E-11 1.2E-15 86.0 11.2 81 11-103 29-109 (125)
44 1wx7_A Ubiquilin 3; ubiquitin- 99.3 4E-11 1.4E-15 82.6 10.7 83 11-105 14-96 (106)
45 3rt3_B Ubiquitin-like protein 99.3 3.9E-11 1.3E-15 87.1 10.8 81 12-103 79-159 (159)
46 3b08_A Polyubiquitin-C, ubiqui 99.3 4.4E-11 1.5E-15 85.1 10.9 77 14-101 76-152 (152)
47 1uel_A HHR23B, UV excision rep 99.3 4.8E-11 1.6E-15 80.8 10.5 89 15-111 1-89 (95)
48 2bwf_A Ubiquitin-like protein 99.2 7.9E-11 2.7E-15 75.4 10.1 72 15-98 5-76 (77)
49 2kan_A Uncharacterized protein 99.2 6.8E-11 2.3E-15 80.4 10.1 84 8-103 9-93 (94)
50 2faz_A Ubiquitin-like containi 99.2 9.8E-11 3.3E-15 75.6 10.3 74 14-98 2-77 (78)
51 3plu_A Ubiquitin-like modifier 99.2 8.8E-11 3E-15 81.2 10.5 76 10-96 17-92 (93)
52 2kdi_A Ubiquitin, vacuolar pro 99.2 1.8E-10 6E-15 81.0 11.0 80 15-105 10-89 (114)
53 1yqb_A Ubiquilin 3; structural 99.2 1E-10 3.6E-15 80.3 9.6 81 10-102 18-98 (100)
54 2klc_A Ubiquilin-1; ubiquitin- 99.2 2.4E-10 8.1E-15 78.5 11.3 81 7-99 18-98 (101)
55 1wia_A Hypothetical ubiquitin- 99.2 1.3E-10 4.6E-15 78.2 9.1 82 12-107 5-87 (95)
56 3l0w_B Monoubiquitinated proli 99.2 1.4E-10 4.9E-15 86.6 10.2 79 15-104 1-79 (169)
57 4eew_A Large proline-rich prot 99.2 2.9E-10 9.8E-15 75.2 10.4 75 11-97 14-88 (88)
58 1wgd_A Homocysteine-responsive 99.2 1.5E-10 5.2E-15 77.7 8.9 81 12-103 5-91 (93)
59 1we6_A Splicing factor, putati 99.1 2.7E-10 9.1E-15 79.2 8.9 79 13-102 26-108 (111)
60 1we7_A SF3A1 protein; structur 99.1 3.7E-10 1.3E-14 79.0 9.5 80 13-103 24-113 (115)
61 3q3f_A Ribonuclease/ubiquitin 99.1 2.9E-10 9.8E-15 87.1 9.7 81 14-105 105-185 (189)
62 3u30_A Ubiquitin, linear DI-ub 99.1 5.5E-10 1.9E-14 82.3 10.8 84 9-103 15-98 (172)
63 3m62_B UV excision repair prot 99.1 3.3E-10 1.1E-14 78.4 8.3 77 15-102 2-78 (106)
64 1uh6_A Ubiquitin-like 5; beta- 99.1 4.5E-10 1.5E-14 78.4 8.8 77 9-96 23-99 (100)
65 3b1l_X E3 ubiquitin-protein li 98.7 8.4E-12 2.9E-16 80.2 0.0 74 16-100 2-75 (76)
66 2wyq_A HHR23A, UV excision rep 99.1 1.4E-09 4.8E-14 71.0 10.7 77 13-97 4-80 (85)
67 1v5o_A 1700011N24RIK protein; 99.1 9.1E-10 3.1E-14 75.5 9.7 83 12-105 5-92 (102)
68 3b08_A Polyubiquitin-C, ubiqui 99.1 1.4E-09 4.9E-14 77.2 10.4 77 15-102 1-77 (152)
69 2daf_A FLJ35834 protein; hypot 99.1 1.5E-09 5E-14 78.0 10.3 79 11-100 12-91 (118)
70 3u5e_m 60S ribosomal protein L 99.1 1.6E-11 5.5E-16 87.6 0.0 78 15-103 1-78 (128)
71 4a20_A Ubiquitin-like protein 99.0 1.4E-09 4.6E-14 75.2 9.5 79 9-98 14-96 (98)
72 2kk8_A Uncharacterized protein 99.0 1.3E-09 4.5E-14 72.6 9.0 74 13-97 9-83 (84)
73 1v2y_A 3300001G02RIK protein; 99.0 9.5E-10 3.3E-14 77.1 8.1 84 10-104 3-102 (105)
74 3u30_A Ubiquitin, linear DI-ub 99.0 1.7E-09 5.8E-14 79.7 9.3 77 14-101 96-172 (172)
75 3u5c_f 40S ribosomal protein S 99.0 3.6E-11 1.2E-15 89.1 0.0 79 15-104 1-79 (152)
76 3m63_B Ubiquitin domain-contai 99.0 6E-10 2.1E-14 76.7 4.8 75 11-97 25-99 (101)
77 2gow_A HCG-1 protein, ubiquiti 98.9 1.4E-08 4.8E-13 73.1 9.5 91 9-104 12-106 (125)
78 1wju_A NEDD8 ultimate buster-1 98.9 7.7E-09 2.6E-13 72.1 7.9 74 16-101 17-94 (100)
79 1x1m_A Ubiquitin-like protein 98.9 1E-08 3.5E-13 70.9 8.0 75 13-98 11-100 (107)
80 2lxa_A Ubiquitin-like protein 98.8 7.2E-09 2.4E-13 70.1 6.3 73 15-98 2-78 (87)
81 2kd0_A LRR repeats and ubiquit 98.8 2.9E-08 9.9E-13 66.0 9.1 65 22-97 19-83 (85)
82 1wxv_A BAG-family molecular ch 98.8 4.4E-08 1.5E-12 65.3 9.1 74 12-97 5-84 (92)
83 3rt3_B Ubiquitin-like protein 98.8 5.7E-08 2E-12 70.2 10.2 76 15-101 3-81 (159)
84 1wgh_A Ubiquitin-like 3, HCG-1 98.8 1.4E-07 4.9E-12 67.0 11.7 83 10-97 12-96 (116)
85 1wgg_A Ubiquitin carboxyl-term 98.8 4E-08 1.4E-12 66.9 8.2 74 11-97 4-78 (96)
86 1v5t_A 8430435I17RIK protein; 98.8 2.6E-08 8.8E-13 66.8 7.1 75 11-97 4-82 (90)
87 1se9_A Ubiquitin family; ubiqu 98.7 7.4E-08 2.5E-12 69.7 9.7 87 12-104 14-109 (126)
88 4dbg_A Ranbp-type and C3HC4-ty 98.7 1.5E-07 5.1E-12 66.1 10.2 74 13-97 23-99 (105)
89 2kjr_A CG11242; UBL, ubiquitin 98.7 1.6E-07 5.4E-12 64.3 9.9 77 8-95 9-93 (95)
90 2fnj_B Transcription elongatio 98.7 1.2E-07 4.3E-12 67.8 9.0 74 15-101 3-83 (118)
91 1v86_A DNA segment, CHR 7, way 98.6 5.5E-08 1.9E-12 65.9 6.2 75 10-97 13-87 (95)
92 2kdb_A Homocysteine-responsive 98.6 8.6E-08 2.9E-12 66.1 6.8 74 11-94 20-98 (99)
93 3ai5_A Yeast enhanced green fl 98.6 2.1E-07 7.2E-12 75.8 10.0 77 11-98 230-306 (307)
94 1wf9_A NPL4 family protein; be 98.6 1.2E-07 4E-12 65.6 6.0 75 11-97 4-94 (107)
95 1v6e_A Cytoskeleton-associated 98.5 4.1E-07 1.4E-11 61.3 8.4 75 11-96 4-86 (95)
96 1oqy_A HHR23A, UV excision rep 98.5 1.9E-07 6.6E-12 77.6 7.6 83 12-102 5-88 (368)
97 2kj6_A Tubulin folding cofacto 98.5 7.3E-07 2.5E-11 61.2 9.2 77 9-96 9-94 (97)
98 4ajy_B Transcription elongatio 98.5 9.4E-07 3.2E-11 63.3 10.0 72 15-98 3-81 (118)
99 2dzj_A Synaptic glycoprotein S 98.4 6.6E-07 2.3E-11 60.1 7.2 72 12-94 8-85 (88)
100 1t0y_A Tubulin folding cofacto 98.4 1.8E-06 6E-11 61.0 9.5 73 13-96 5-85 (122)
101 4b6w_A Tubulin-specific chaper 98.3 1.7E-06 5.7E-11 58.0 7.3 73 14-97 2-83 (86)
102 2xzm_9 RPS31E; ribosome, trans 98.3 6.8E-08 2.3E-12 74.1 0.2 73 16-104 2-74 (189)
103 2kzr_A Ubiquitin thioesterase 98.3 6.5E-07 2.2E-11 59.2 4.9 71 15-97 1-77 (86)
104 1wjn_A Tubulin-folding protein 98.3 6.2E-06 2.1E-10 55.6 8.9 77 10-97 5-92 (97)
105 3shq_A UBLCP1; phosphatase, hy 98.0 2.1E-05 7.1E-10 64.0 7.7 73 13-97 4-79 (320)
106 2dzm_A FAS-associated factor 1 98.0 4.3E-05 1.5E-09 52.7 8.2 76 14-101 9-86 (100)
107 2al3_A TUG long isoform; TUG U 97.4 0.00069 2.4E-08 46.3 7.0 74 13-97 8-81 (90)
108 2pjh_A Protein NPL4, nuclear p 97.3 0.00015 5.3E-09 47.8 3.3 70 14-95 4-78 (80)
109 2bps_A YUKD protein; ubiquitin 96.8 0.0028 9.5E-08 42.3 5.8 71 13-94 3-80 (81)
110 3qx1_A FAS-associated factor 1 96.4 0.03 1E-06 36.5 8.8 72 12-95 5-81 (84)
111 4efo_A Serine/threonine-protei 96.1 0.03 1E-06 38.3 7.7 52 14-76 12-64 (94)
112 2cr5_A Reproduction 8; UBX dom 96.0 0.047 1.6E-06 37.4 8.5 78 6-95 15-96 (109)
113 3rpf_C Molybdopterin convertin 95.9 0.031 1.1E-06 35.4 6.8 57 29-101 16-74 (74)
114 2dzk_A UBX domain-containing p 95.7 0.2 6.9E-06 34.3 10.4 78 9-97 8-90 (109)
115 3jyu_A Ubiquitin carboxyl-term 95.6 0.076 2.6E-06 40.8 9.0 66 26-102 153-225 (231)
116 1ryj_A Unknown; beta/alpha pro 95.2 0.31 1.1E-05 30.6 9.4 67 14-101 4-70 (70)
117 4a3p_A Ubiquitin carboxyl-term 94.7 0.095 3.2E-06 39.9 6.9 66 26-102 141-213 (217)
118 1wj4_A KIAA0794 protein; UBX d 94.4 0.27 9.4E-06 34.5 8.4 74 10-95 39-117 (124)
119 2daj_A KIAA0977 protein, COBL- 94.1 0.15 5E-06 34.7 6.0 66 12-88 8-76 (91)
120 3po0_A Small archaeal modifier 93.6 0.51 1.7E-05 30.4 7.9 72 25-101 18-89 (89)
121 1vjk_A Molybdopterin convertin 92.8 0.73 2.5E-05 30.4 8.0 72 25-101 27-98 (98)
122 1tyg_B YJBS; alpha beta barrel 92.5 0.33 1.1E-05 32.3 5.8 69 12-101 18-87 (87)
123 1fm0_D Molybdopterin convertin 92.4 0.4 1.4E-05 30.2 5.9 64 26-101 18-81 (81)
124 2q5w_D Molybdopterin convertin 91.7 0.4 1.4E-05 29.9 5.2 60 25-101 16-77 (77)
125 1y8x_B Ubiquitin-activating en 91.1 0.24 8.1E-06 33.9 3.9 61 26-95 6-82 (98)
126 1s3s_G P47 protein; AAA ATPase 91.1 1.6 5.3E-05 30.6 8.4 71 13-93 51-124 (127)
127 2l32_A Small archaeal modifier 90.5 0.85 2.9E-05 29.2 6.0 65 14-101 2-66 (74)
128 2kl0_A Putative thiamin biosyn 89.6 0.38 1.3E-05 30.7 3.7 61 23-102 6-66 (73)
129 2hj1_A Hypothetical protein; s 89.3 1.6 5.6E-05 29.5 6.9 72 13-97 11-85 (97)
130 2kvr_A Ubiquitin carboxyl-term 88.6 0.57 1.9E-05 33.2 4.4 58 6-74 22-94 (130)
131 2g1e_A Hypothetical protein TA 88.5 2.2 7.6E-05 27.0 6.9 71 29-101 19-90 (90)
132 1f0z_A THis protein; ubiquitin 88.5 1 3.5E-05 27.6 5.1 61 23-101 6-66 (66)
133 3u7z_A Putative metal binding 88.5 1.5 5.1E-05 30.0 6.3 86 9-97 3-98 (101)
134 3dwg_C 9.5 kDa culture filtrat 88.1 1.8 6.3E-05 27.9 6.4 71 29-101 21-93 (93)
135 1oey_A P67-PHOX, neutrophil cy 88.0 1.7 5.7E-05 28.9 6.1 47 13-72 4-50 (83)
136 2k5p_A THis protein, thiamine- 87.8 0.3 1E-05 31.6 2.4 65 23-103 6-71 (78)
137 2qjl_A URM1, ubiquitin-related 87.7 3 0.0001 27.4 7.4 76 25-101 20-99 (99)
138 2inc_C TOUB protein; DIIRON, 4 87.6 3.6 0.00012 27.4 7.6 62 28-97 16-82 (83)
139 2cu3_A Unknown function protei 87.6 1.4 4.9E-05 26.8 5.3 60 23-101 5-64 (64)
140 2kc2_A Talin-1, F1; FERM, adhe 87.5 1.3 4.5E-05 31.6 5.7 32 16-47 13-44 (128)
141 1wz3_A Autophagy 12B, ATG12B, 85.5 1.4 4.8E-05 29.8 4.8 67 1-84 3-75 (96)
142 3ge3_C Toluene-4-monooxygenase 82.8 5.2 0.00018 26.7 6.5 62 27-96 17-82 (84)
143 1h4r_A Merlin; FERM, neurofibr 82.1 14 0.00049 28.4 10.0 63 11-85 19-86 (314)
144 2ylm_A Ubiquitin carboxyl-term 81.8 3.5 0.00012 35.2 6.8 76 11-97 127-217 (530)
145 2l52_A Methanosarcina acetivor 81.4 5.4 0.00019 26.3 6.4 66 34-101 27-99 (99)
146 2kmm_A Guanosine-3',5'-BIS(dip 80.7 4.9 0.00017 24.3 5.6 61 17-97 3-63 (73)
147 1rws_A Hypothetical protein PF 80.0 1 3.5E-05 28.6 2.2 53 29-101 25-77 (77)
148 1ef1_A Moesin; membrane, FERM 78.7 14 0.00049 28.0 8.9 60 14-85 1-66 (294)
149 1wgk_A Riken cDNA 2900073H19 p 78.4 10 0.00036 25.9 7.2 73 26-103 31-110 (114)
150 1j0g_A Hypothetical protein 18 76.5 14 0.0005 24.7 8.2 80 11-101 7-91 (92)
151 2ylm_A Ubiquitin carboxyl-term 73.1 4.4 0.00015 34.6 4.9 37 27-74 38-74 (530)
152 3hvz_A Uncharacterized protein 72.6 15 0.00053 23.5 6.5 62 16-97 7-68 (78)
153 3w1s_C Ubiquitin-like protein 71.9 13 0.00045 24.7 6.1 60 11-84 5-70 (91)
154 1vd2_A Protein kinase C, IOTA 71.2 20 0.00067 23.8 7.6 48 12-71 4-52 (89)
155 3ivf_A Talin-1; FERM domain, c 70.7 31 0.001 27.3 9.2 74 14-95 3-82 (371)
156 2juo_A GA-binding protein alph 69.1 23 0.00078 23.7 6.8 61 27-98 5-65 (89)
157 1q1o_A Cell division control p 69.0 21 0.0007 24.3 6.7 34 14-47 5-45 (98)
158 4gdk_A Ubiquitin-like protein 68.1 9.8 0.00033 25.2 4.8 71 13-95 4-84 (91)
159 3qij_A Protein 4.1; cytoskelet 67.7 14 0.00047 28.7 6.4 37 11-47 14-50 (296)
160 2zjd_A Microtubule-associated 66.5 31 0.0011 24.3 8.4 73 12-96 33-119 (130)
161 2i1j_A Moesin; FERM, coiled-co 65.5 36 0.0012 29.2 9.1 47 12-70 2-49 (575)
162 1v8c_A MOAD related protein; r 64.5 19 0.00065 26.1 6.2 71 29-102 18-88 (168)
163 2bb6_A TCII, TC II, transcobal 60.4 53 0.0018 27.4 9.0 81 14-98 318-413 (414)
164 1wxm_A A-RAF proto-oncogene se 58.6 37 0.0013 22.5 8.6 70 11-96 6-79 (86)
165 1eo6_A GATE-16, golgi-associat 56.3 26 0.0009 24.0 5.5 73 12-95 26-109 (117)
166 3ivf_A Talin-1; FERM domain, c 56.2 72 0.0025 25.1 10.0 47 13-70 84-131 (371)
167 2npt_A Dual specificity mitoge 54.6 49 0.0017 22.6 7.2 60 10-95 10-71 (106)
168 1gcq_C VAV proto-oncogene; SH3 53.1 6 0.0002 23.8 1.5 29 69-97 12-40 (70)
169 2r2q_A Gamma-aminobutyric acid 52.9 36 0.0012 22.9 5.7 62 12-84 25-93 (110)
170 3rui_B Autophagy-related prote 51.8 42 0.0015 23.1 6.0 73 12-95 28-111 (118)
171 2fpe_A C-JUN-amino-terminal ki 50.6 14 0.00048 21.5 2.9 19 79-97 15-33 (62)
172 2l05_A Serine/threonine-protei 49.7 57 0.002 22.0 9.8 67 16-96 19-89 (95)
173 2lj0_A Sorbin and SH3 domain-c 48.4 18 0.00061 22.0 3.2 21 78-98 17-37 (65)
174 2pmv_A Gastric intrinsic facto 47.2 82 0.0028 26.1 8.0 72 25-98 313-398 (399)
175 2j05_A RAS GTPase-activating p 46.6 19 0.00066 21.1 3.1 21 79-99 18-38 (65)
176 1zuy_A Myosin-5 isoform; SH3 d 46.5 22 0.00074 20.2 3.3 21 78-98 12-32 (58)
177 1jo8_A ABP1P, actin binding pr 46.1 21 0.0007 20.5 3.1 22 79-100 12-33 (58)
178 2nvu_B Maltose binding protein 44.6 35 0.0012 29.9 5.6 60 26-96 713-790 (805)
179 3u52_E Phenol hydroxylase comp 44.2 80 0.0027 22.1 7.4 68 25-95 38-107 (119)
180 1zx6_A YPR154WP; SH3 domain, p 43.9 22 0.00074 20.4 3.0 21 79-99 14-34 (58)
181 1wwt_A Threonyl-tRNA synthetas 43.3 58 0.002 20.3 6.2 78 12-114 9-86 (88)
182 1tuc_A Alpha-spectrin; capping 43.0 21 0.00071 21.0 2.9 21 80-100 2-22 (63)
183 1uti_A GRB2-related adaptor pr 42.8 25 0.00085 20.0 3.1 20 79-98 13-32 (58)
184 2oyn_A Hypothetical protein MJ 42.7 12 0.00042 27.1 2.0 18 83-100 119-136 (146)
185 2bz8_A SH3-domain kinase bindi 42.6 25 0.00086 20.1 3.1 21 79-99 13-33 (58)
186 2eyz_A V-CRK sarcoma virus CT1 42.4 58 0.002 25.1 6.1 81 13-98 45-165 (304)
187 3au4_A Myosin-X; protein-prote 42.0 1E+02 0.0035 25.7 7.9 48 12-70 214-263 (555)
188 2ebp_A SAM and SH3 domain-cont 41.8 22 0.00074 21.7 2.9 20 79-98 23-42 (73)
189 3pvl_A Myosin VIIA isoform 1; 41.4 87 0.003 27.3 7.6 47 13-70 262-309 (655)
190 1w70_A Neutrophil cytosol fact 41.1 29 0.00098 20.0 3.2 20 79-98 16-35 (60)
191 1yn8_A NBP2, NAP1-binding prot 40.8 26 0.00089 19.9 3.0 21 79-99 13-33 (59)
192 1uj0_A Signal transducing adap 40.7 24 0.0008 20.5 2.8 21 79-99 17-37 (62)
193 2fpf_A C-JUN-amino-terminal ki 40.7 24 0.00081 21.1 2.9 20 79-98 18-37 (71)
194 1tg0_A BBC1 protein, myosin ta 40.6 29 0.001 20.5 3.3 20 79-98 19-38 (68)
195 1g2b_A Spectrin alpha chain; c 40.6 27 0.00092 20.3 3.1 20 79-98 33-52 (62)
196 2g6f_X RHO guanine nucleotide 40.4 29 0.001 19.8 3.2 21 79-99 16-36 (59)
197 2nwm_A Vinexin; cell adhesion; 40.0 28 0.00095 20.7 3.1 20 79-98 13-32 (65)
198 3qwx_X Cell death abnormality 39.7 91 0.0031 21.7 6.4 20 79-98 130-149 (174)
199 3h9d_A ATG8, microtubule-assoc 39.5 39 0.0013 23.4 4.2 73 12-95 29-112 (119)
200 2vwf_A Growth factor receptor- 39.4 30 0.001 19.6 3.1 20 79-98 14-33 (58)
201 1y0m_A 1-phosphatidylinositol- 39.4 30 0.001 19.9 3.1 20 79-98 15-34 (61)
202 2gnc_A SLIT-ROBO RHO GTPase-ac 38.6 29 0.00098 20.0 2.9 22 79-100 18-39 (60)
203 1k4u_S Phagocyte NADPH oxidase 38.4 33 0.0011 19.8 3.3 22 79-100 17-38 (62)
204 2ew3_A SH3-containing GRB2-lik 37.8 33 0.0011 20.6 3.2 22 79-100 15-36 (68)
205 1cka_A C-CRK N-terminal SH3 do 37.7 32 0.0011 19.5 3.0 20 79-98 13-32 (57)
206 2j6f_A CD2-associated protein; 37.6 34 0.0012 19.8 3.2 19 79-97 13-31 (62)
207 2bzy_A CRK-like protein, CRKL 37.1 25 0.00084 20.8 2.5 20 80-99 16-35 (67)
208 2xmf_A Myosin 1E SH3; motor pr 37.1 35 0.0012 19.5 3.2 20 79-98 17-36 (60)
209 1sem_A SEM-5; SRC-homology 3 ( 37.0 33 0.0011 19.4 3.0 20 79-98 14-33 (58)
210 1zlm_A Osteoclast stimulating 36.7 34 0.0012 19.4 3.1 19 79-97 15-33 (58)
211 2dl4_A Protein STAC; SH3 domai 36.1 33 0.0011 20.3 3.0 20 79-98 19-38 (68)
212 2drm_A Acanthamoeba myosin IB; 35.8 37 0.0013 19.2 3.1 20 79-98 15-34 (58)
213 2dl3_A Sorbin and SH3 domain-c 35.7 30 0.001 20.3 2.8 21 79-99 19-39 (68)
214 4e6r_A Cytoplasmic protein NCK 35.7 40 0.0014 18.9 3.3 20 79-98 13-32 (58)
215 1ruw_A Myosin-3 isoform, MYO3; 35.4 39 0.0013 19.9 3.3 22 78-99 14-35 (69)
216 2o9s_A Ponsin; SH3 domain, sig 35.3 39 0.0013 19.8 3.2 20 79-98 18-37 (67)
217 1v1c_A Obscurin; muscle, sarco 35.3 38 0.0013 21.7 3.3 38 78-115 18-63 (71)
218 2oaw_A Spectrin alpha chain, b 35.2 32 0.0011 19.9 2.8 21 79-99 13-33 (65)
219 2djq_A SH3 domain containing r 35.2 36 0.0012 20.0 3.1 19 79-97 19-37 (68)
220 1ue9_A Intersectin 2; beta bar 34.8 39 0.0013 20.6 3.2 20 79-98 19-38 (80)
221 2cuc_A SH3 domain containing r 34.6 36 0.0012 20.0 3.0 21 79-99 19-39 (70)
222 2ak5_A RHO guanine nucleotide 34.6 33 0.0011 19.9 2.8 21 79-99 18-38 (64)
223 3c0c_A Endophilin-A2; endocyto 34.5 40 0.0014 20.2 3.2 22 79-100 25-46 (73)
224 2eyx_A V-CRK sarcoma virus CT1 34.4 30 0.001 20.5 2.6 19 80-98 21-39 (67)
225 2fei_A CD2-associated protein; 34.1 21 0.00072 21.3 1.9 19 79-97 13-31 (65)
226 2lcs_A NAP1-binding protein 2; 34.0 42 0.0014 20.3 3.3 21 79-99 17-37 (73)
227 2dbk_A CRK-like protein; struc 34.0 35 0.0012 21.4 3.0 20 79-98 30-49 (88)
228 2dmo_A Neutrophil cytosol fact 33.9 34 0.0012 20.3 2.8 21 79-99 19-39 (68)
229 1x2k_A OSTF1, osteoclast stimu 33.8 38 0.0013 20.0 3.0 19 79-97 19-37 (68)
230 1x2p_A Protein arginine N-meth 33.6 39 0.0013 19.9 3.0 20 79-98 19-38 (68)
231 1gri_A Growth factor bound pro 33.4 1.3E+02 0.0044 21.4 8.5 80 14-99 94-190 (217)
232 2a28_A BZZ1 protein; SH3 domai 33.4 34 0.0012 19.2 2.6 20 79-98 12-31 (54)
233 2i0n_A Class VII unconventiona 33.3 30 0.001 21.3 2.5 23 79-101 22-44 (80)
234 2dl8_A SLIT-ROBO RHO GTPase-ac 33.2 38 0.0013 20.3 3.0 22 79-100 21-42 (72)
235 2l66_A SSO7C4, transcriptional 33.2 23 0.00079 20.6 1.9 26 72-97 12-37 (53)
236 1w1f_A Tyrosine-protein kinase 33.0 44 0.0015 19.3 3.2 20 79-98 19-38 (65)
237 3u23_A CD2-associated protein; 32.7 47 0.0016 19.0 3.2 20 79-98 19-38 (65)
238 1x6b_A RHO guanine exchange fa 32.5 35 0.0012 20.9 2.8 19 79-97 29-47 (79)
239 2v1q_A SLA1, cytoskeleton asse 32.2 35 0.0012 19.3 2.6 19 79-97 14-32 (60)
240 2yuo_A CIP85, RUN and TBC1 dom 31.5 38 0.0013 20.6 2.8 20 79-98 19-38 (78)
241 2dil_A Proline-serine-threonin 31.4 39 0.0013 19.9 2.8 20 79-98 20-39 (69)
242 2ed0_A ABL interactor 2; coile 31.0 42 0.0014 20.5 2.9 21 79-99 29-49 (78)
243 1yfb_A Transition state regula 30.8 28 0.00095 21.1 2.0 27 71-97 21-47 (59)
244 2ecz_A Sorbin and SH3 domain-c 30.4 31 0.0011 20.4 2.2 22 79-100 19-40 (70)
245 2ega_A SH3 and PX domain-conta 30.4 35 0.0012 20.2 2.4 21 79-99 20-40 (70)
246 2ct3_A Vinexin; SH3 domian, st 30.4 37 0.0013 19.9 2.6 20 79-98 19-38 (70)
247 2pqh_A Spectrin alpha chain, b 30.3 41 0.0014 20.6 2.8 21 79-99 14-34 (80)
248 1gl5_A Tyrosine-protein kinase 30.2 42 0.0014 19.7 2.7 20 79-98 14-33 (67)
249 2kxd_A 11-MER peptide, SH3 dom 30.2 40 0.0014 20.2 2.7 20 80-99 12-31 (73)
250 2ke9_A Caskin-2; SH3 domain, A 30.1 32 0.0011 21.6 2.3 21 79-99 31-51 (83)
251 3ulr_B SRC substrate cortactin 29.8 52 0.0018 18.9 3.1 20 79-98 21-40 (65)
252 1b07_A Protein (proto-oncogene 29.5 50 0.0017 19.5 3.0 21 79-99 15-35 (65)
253 1x69_A Cortactin isoform A; SH 29.2 53 0.0018 19.9 3.2 22 79-100 29-50 (79)
254 2l0a_A STAM-1, signal transduc 29.1 55 0.0019 20.0 3.2 22 79-100 29-50 (72)
255 3m95_A Autophagy related prote 29.1 65 0.0022 22.5 3.9 73 12-95 34-117 (125)
256 2lx7_A GAS-7, growth arrest-sp 28.9 29 0.001 20.8 1.8 19 80-98 16-35 (60)
257 2ed1_A 130 kDa phosphatidylino 28.9 34 0.0012 20.7 2.2 19 79-97 22-40 (76)
258 4esr_A Jouberin; AHI-1, AHI1, 28.8 59 0.002 19.0 3.3 20 79-98 18-37 (69)
259 4f14_A Nebulette; SH3 domain, 28.5 53 0.0018 18.7 3.0 20 79-98 18-37 (64)
260 2ekh_A SH3 and PX domain-conta 28.4 47 0.0016 20.3 2.9 21 79-99 20-40 (80)
261 3cqt_A P59-FYN, proto-oncogene 28.4 50 0.0017 20.3 3.0 20 79-98 17-36 (79)
262 1x2q_A Signal transducing adap 28.3 50 0.0017 20.6 3.0 20 79-98 29-48 (88)
263 3i5r_A Phosphatidylinositol 3- 28.2 37 0.0013 20.9 2.3 18 79-96 17-34 (83)
264 2dnu_A RUH-061, SH3 multiple d 28.1 41 0.0014 19.9 2.5 22 78-99 19-40 (71)
265 2jt4_A Cytoskeleton assembly c 28.1 46 0.0016 19.6 2.7 20 79-98 18-37 (71)
266 1csk_A C-SRC SH3 domain; phosp 28.1 54 0.0019 19.4 3.0 18 79-96 23-40 (71)
267 2jte_A CD2-associated protein; 28.1 49 0.0017 19.1 2.8 20 79-98 18-37 (64)
268 1oot_A Hypothetical 40.4 kDa p 27.9 59 0.002 18.4 3.1 20 79-98 15-34 (60)
269 2yun_A Nostrin; nitric oxide s 27.8 47 0.0016 20.1 2.8 20 79-98 19-38 (79)
270 1wgr_A Growth factor receptor- 27.5 1.4E+02 0.0048 20.0 5.8 39 9-47 4-42 (100)
271 2ydl_A SH3 domain-containing k 27.5 57 0.002 19.5 3.1 20 79-98 14-33 (69)
272 3ngp_A Spectrin alpha chain, b 27.4 62 0.0021 18.3 3.1 21 79-99 18-38 (62)
273 1wfy_A Regulator of G-protein 27.4 47 0.0016 22.8 2.9 51 13-74 15-66 (104)
274 2iim_A Proto-oncogene tyrosine 27.1 48 0.0017 19.0 2.6 19 79-97 18-36 (62)
275 3o5z_A Phosphatidylinositol 3- 27.0 39 0.0013 21.4 2.3 27 65-95 13-39 (90)
276 1neg_A Spectrin alpha chain, b 27.0 49 0.0017 20.8 2.8 21 79-99 29-49 (83)
277 1aww_A ATK, AMGX1, BPK, bruton 26.9 33 0.0011 20.1 1.8 21 79-99 20-40 (67)
278 4ag1_C Fynomer; hydrolase-de n 26.8 56 0.0019 20.3 3.0 21 79-99 18-38 (84)
279 1wxb_A Epidermal growth factor 26.8 48 0.0016 19.5 2.6 19 79-97 19-37 (68)
280 3h0h_A Proto-oncogene tyrosine 26.6 59 0.002 19.2 3.0 31 64-98 16-46 (73)
281 1wi7_A SH3-domain kinase bindi 26.5 27 0.00092 20.6 1.4 20 79-98 19-38 (68)
282 2yup_A Vinexin; sorbin and SH3 26.3 40 0.0014 21.1 2.3 19 79-97 29-47 (90)
283 1wie_A RIM binding protein 2; 26.3 66 0.0022 20.5 3.4 15 81-95 37-51 (96)
284 1spk_A RSGI RUH-010, riken cDN 26.1 42 0.0014 20.0 2.2 19 79-97 20-38 (72)
285 2bkf_A Zinc-finger protein NBR 26.1 1.4E+02 0.0049 19.6 6.4 45 12-70 4-50 (87)
286 3qwy_A Cell death abnormality 26.1 2.2E+02 0.0075 21.7 8.4 80 13-98 76-178 (308)
287 3o27_A Putative uncharacterize 26.1 40 0.0014 21.5 2.1 23 79-101 32-54 (68)
288 3cta_A Riboflavin kinase; stru 26.1 34 0.0012 25.1 2.1 26 77-102 201-226 (230)
289 2ki8_A Tungsten formylmethanof 26.0 14 0.00048 26.0 -0.0 17 79-95 60-76 (146)
290 2x3w_D Syndapin I, protein kin 26.0 46 0.0016 18.9 2.4 20 79-98 15-34 (60)
291 2kgt_A Tyrosine-protein kinase 25.8 42 0.0014 19.9 2.2 18 79-97 22-39 (72)
292 2epd_A RHO GTPase-activating p 25.8 41 0.0014 20.4 2.2 22 79-100 22-43 (76)
293 2kxc_A Brain-specific angiogen 25.7 41 0.0014 19.7 2.1 19 79-97 19-37 (67)
294 1zps_A PRA-CH, phosphoribosyl- 25.6 43 0.0015 24.1 2.5 80 10-102 19-101 (138)
295 3thk_A Spectrin alpha chain, b 25.6 67 0.0023 18.9 3.1 20 79-98 17-36 (73)
296 1i07_A Epidermal growth factor 25.5 46 0.0016 19.0 2.3 19 79-97 13-31 (60)
297 1wgy_A RAP guanine nucleotide 25.3 1.2E+02 0.0041 20.6 4.6 74 11-95 6-84 (104)
298 2eqi_A Phospholipase C, gamma 25.3 34 0.0012 20.2 1.7 22 79-100 19-40 (69)
299 1wxt_A Hypothetical protein FL 25.3 54 0.0019 19.3 2.6 19 79-97 19-37 (68)
300 3eg3_A Proto-oncogene tyrosine 25.2 83 0.0028 17.8 3.4 21 79-99 17-37 (63)
301 2d8j_A FYN-related kinase; SH3 25.2 50 0.0017 19.7 2.5 20 79-98 19-38 (77)
302 4glm_A Dynamin-binding protein 25.0 76 0.0026 18.5 3.3 20 79-98 25-44 (72)
303 2ct4_A CDC42-interacting prote 24.9 54 0.0018 19.3 2.6 20 79-98 19-38 (70)
304 2k2m_A EPS8-like protein 1; al 24.9 56 0.0019 19.3 2.6 19 79-97 20-38 (68)
305 1wj6_A KIAA0049 protein, RSGI 24.7 1.7E+02 0.0057 19.9 5.8 53 11-77 11-68 (101)
306 2da9_A SH3-domain kinase bindi 24.6 45 0.0015 19.7 2.2 20 79-98 19-38 (70)
307 1wyx_A CRK-associated substrat 24.6 55 0.0019 19.2 2.6 20 79-98 15-34 (69)
308 2ysq_A RHO guanine nucleotide 24.5 66 0.0023 19.6 3.0 20 79-98 22-41 (81)
309 1k1z_A VAV; SH3, proto-oncogen 24.4 59 0.002 19.6 2.7 18 81-98 32-49 (78)
310 2dl7_A KIAA0769 protein; SH3 d 24.3 48 0.0016 19.8 2.3 19 79-97 20-38 (73)
311 2cre_A HEF-like protein; SH3 d 24.2 52 0.0018 19.3 2.4 20 79-98 19-38 (71)
312 1zuu_A BZZ1 protein; SH3 domai 24.2 58 0.002 18.3 2.5 21 79-99 13-33 (58)
313 2e5k_A Suppressor of T-cell re 23.9 43 0.0015 21.1 2.1 20 79-98 28-47 (94)
314 2cub_A Cytoplasmic protein NCK 23.6 63 0.0022 20.2 2.8 20 79-98 29-48 (88)
315 2gqi_A RAS GTPase-activating p 23.6 24 0.00082 21.1 0.7 20 79-98 20-39 (71)
316 2jmc_A Spectrin alpha chain, b 23.6 40 0.0014 20.5 1.8 21 79-99 3-23 (77)
317 1x6g_A Megakaryocyte-associate 23.5 65 0.0022 19.8 2.8 21 79-99 29-49 (81)
318 1uff_A Intersectin 2; beta bar 23.5 45 0.0015 21.1 2.1 20 79-98 17-36 (93)
319 2dbm_A SH3-containing GRB2-lik 23.4 38 0.0013 20.3 1.6 20 79-98 19-38 (73)
320 1s1n_A Nephrocystin 1; beta ba 23.0 40 0.0014 19.7 1.7 20 79-98 22-41 (68)
321 1x43_A Endophilin B1, SH3 doma 23.0 58 0.002 19.8 2.5 20 79-98 29-48 (81)
322 3gqs_A Adenylate cyclase-like 22.9 41 0.0014 21.8 1.9 20 70-94 73-92 (106)
323 1j3t_A Intersectin 2; beta bar 22.8 72 0.0025 19.0 2.9 20 79-98 22-41 (74)
324 1u5s_A Cytoplasmic protein NCK 22.8 58 0.002 19.2 2.4 19 79-97 18-36 (71)
325 2pie_A E3 ubiquitin-protein li 22.5 43 0.0015 22.9 2.0 32 69-103 78-109 (138)
326 1uhf_A Intersectin 2; beta bar 22.5 68 0.0023 18.9 2.7 19 79-97 20-38 (69)
327 2jw4_A Cytoplasmic protein NCK 22.4 70 0.0024 19.0 2.8 19 79-97 19-37 (72)
328 2k9g_A SH3 domain-containing k 22.2 71 0.0024 18.9 2.8 20 79-98 21-40 (73)
329 2b86_A Cytoplasmic protein NCK 22.0 64 0.0022 19.3 2.5 19 79-97 16-34 (67)
330 2yuq_A Tyrosine-protein kinase 22.0 76 0.0026 19.5 3.0 21 79-99 31-51 (85)
331 2dlp_A KIAA1783 protein; SH3 d 21.7 54 0.0019 20.3 2.2 19 79-97 20-38 (85)
332 3po8_A RV0020C protein, putati 21.6 57 0.002 20.8 2.3 18 71-94 70-87 (100)
333 2k9x_A Tburm1, uncharacterized 21.3 65 0.0022 21.7 2.7 85 14-101 6-102 (110)
334 2v1y_A Phosphatidylinositol-4, 21.3 2E+02 0.0068 19.5 6.3 38 11-48 16-53 (108)
335 2jqj_A DNA damage response pro 21.1 44 0.0015 23.3 1.8 21 70-94 91-111 (151)
336 1wmh_B Partitioning defective- 20.8 1.8E+02 0.0063 19.0 6.4 45 13-70 5-52 (86)
337 3rnj_A Brain-specific angiogen 20.7 73 0.0025 18.5 2.5 18 80-97 21-38 (67)
338 2oi3_A Tyrosine-protein kinase 20.7 89 0.003 19.0 3.1 20 79-98 37-56 (86)
339 4h87_A Kanadaptin; FHA domain 20.6 75 0.0025 21.7 2.9 25 66-94 95-119 (130)
340 1wx6_A Cytoplasmic protein NCK 20.5 87 0.003 19.4 3.0 19 79-97 29-47 (91)
No 1
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.96 E-value=1.4e-29 Score=181.86 Aligned_cols=81 Identities=49% Similarity=0.849 Sum_probs=76.1
Q ss_pred CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523 9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE 88 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD 88 (126)
+.++++|+|+|++++|.+++|+|++++||++||++||++ .|++++++||+|||++|.+++||++|+|||
T Consensus 35 k~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er-----------~Gl~~~~irFlFDG~rI~~~~TP~dL~MED 103 (115)
T 3kyd_D 35 KKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEGQRIADNHTPKELGMEE 103 (115)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHH-----------HTCCTTSEEEEETTEECCTTCCTTTTTCCT
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHH-----------hCCChhhEEEEECCeECCCCCCHHHcCCCC
Confidence 345789999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCEEEEEeeecC
Q psy4523 89 GDTIEIYQQQTG 100 (126)
Q Consensus 89 GD~Idv~~~Q~G 100 (126)
||+|||+++|+|
T Consensus 104 gD~IdV~~~Q~G 115 (115)
T 3kyd_D 104 EDVIEVYQEQCG 115 (115)
T ss_dssp TCEEEEEECCCC
T ss_pred CCEEEEEeeccC
Confidence 999999999998
No 2
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.96 E-value=3.5e-29 Score=177.25 Aligned_cols=89 Identities=44% Similarity=0.692 Sum_probs=83.3
Q ss_pred CCccccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCC
Q psy4523 1 MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDT 80 (126)
Q Consensus 1 ~~~~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~T 80 (126)
|++++++..+.+++|+|+|++ +|++++|+|+++++|++||++||++ .|++++++||+|||++|.+++|
T Consensus 18 ~~~~~~~~~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek-----------~gi~~~~~rF~FdG~rl~~~~T 85 (106)
T 2eke_C 18 RGSEVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGIRIQADQT 85 (106)
T ss_dssp CCCCCCCCCCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTCC
T ss_pred CCcccCCCCCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHH-----------hCCCcccEEEEECCeEcCCCCC
Confidence 677888888899999999999 9999999999999999999999999 9999999999999999999999
Q ss_pred ccccCCCCCCEEEEEeeecCC
Q psy4523 81 PSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 81 P~dL~MeDGD~Idv~~~Q~GG 101 (126)
|++|+|||||+|+|+++|+||
T Consensus 86 p~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 86 PEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp TTTTTCCTTEEEEEEECC---
T ss_pred HHHcCCCCCCEEEEEeecccC
Confidence 999999999999999999998
No 3
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.96 E-value=1.3e-28 Score=169.65 Aligned_cols=81 Identities=70% Similarity=1.123 Sum_probs=74.9
Q ss_pred CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523 10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG 89 (126)
Q Consensus 10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG 89 (126)
+.+++|+|+|++++|++++|+|+++++|++||++||++ .|++++++||+|||++|.+++||++|+||||
T Consensus 13 ~~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~-----------~gi~~~~~rf~fdG~~l~~~~Tp~dl~medg 81 (93)
T 2d07_B 13 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFDGQPINETDTPAQLEMEDE 81 (93)
T ss_dssp --CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTCCTTTTTCCTT
T ss_pred CCCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHH-----------hCCCccceEEEECCEEcCCCCCHHHcCCCCC
Confidence 45789999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CEEEEEeeecCC
Q psy4523 90 DTIEIYQQQTGG 101 (126)
Q Consensus 90 D~Idv~~~Q~GG 101 (126)
|+|||+++|+||
T Consensus 82 D~Idv~~~q~GG 93 (93)
T 2d07_B 82 DTIDVFQQQTGG 93 (93)
T ss_dssp EEEEEEECC---
T ss_pred CEEEEEeeccCC
Confidence 999999999998
No 4
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.96 E-value=1.5e-28 Score=169.25 Aligned_cols=83 Identities=69% Similarity=1.079 Sum_probs=79.4
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT 91 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~ 91 (126)
++.|+|+|++++|++++|+|+++++|++||++||++ .|++++++||+|||++|.+++||++|+|||||+
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~-----------~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~ 71 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFDGQPINETDTPAQLEMEDEDT 71 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHH-----------TTCCSTTEEEEETTEECCTTCCTTTTTCCTTEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-----------hCCCcccEEEEECCEEcCCCCCHHHcCCCCCCE
Confidence 568999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred EEEEeeecCCCcCC
Q psy4523 92 IEIYQQQTGGFKQT 105 (126)
Q Consensus 92 Idv~~~Q~GG~~~~ 105 (126)
|+|+++|+||+.+-
T Consensus 72 Idv~~~q~gg~~~~ 85 (91)
T 2io0_B 72 IDVFQQQTGGVYLE 85 (91)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEeccCCcccc
Confidence 99999999998754
No 5
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.95 E-value=2.2e-28 Score=169.01 Aligned_cols=85 Identities=67% Similarity=1.075 Sum_probs=79.2
Q ss_pred CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523 10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG 89 (126)
Q Consensus 10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG 89 (126)
+.+++|+|+|++++|++++|+|+++++|++||++||++ .|++++++||+|||++|.+++||++|+||||
T Consensus 3 ~~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~-----------~gi~~~~~rf~FdG~~l~~~~Tp~dl~medg 71 (94)
T 2io1_B 3 HMNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFDGQPINETDTPAQLEMEDE 71 (94)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTCCTTTTTCCTT
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHH-----------hCCCcccEEEEECCEEcCCCCCHHHcCCCCC
Confidence 45679999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CEEEEEeeecCCCcCC
Q psy4523 90 DTIEIYQQQTGGFKQT 105 (126)
Q Consensus 90 D~Idv~~~Q~GG~~~~ 105 (126)
|+|||+++|+||+...
T Consensus 72 D~Idv~~~~~GG~~~~ 87 (94)
T 2io1_B 72 DTIDVFQQQTGGVPES 87 (94)
T ss_dssp CEEEEEECCEESCCC-
T ss_pred CEEEEEEeccCCCccc
Confidence 9999999999998755
No 6
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.95 E-value=2.3e-28 Score=172.18 Aligned_cols=83 Identities=67% Similarity=1.057 Sum_probs=80.1
Q ss_pred CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523 10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG 89 (126)
Q Consensus 10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG 89 (126)
+.+++|+|+|++++|++++|+|+++++|++||++||++ .|++++++||+|||++|.+++||++|+||||
T Consensus 20 ~~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek-----------~gi~~~~~rf~FdG~~l~~~~Tp~dl~medg 88 (104)
T 1wz0_A 20 ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFDGQPINETDTPAQLEMEDE 88 (104)
T ss_dssp SCSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHH-----------HTCCTTTSCEESSSSBCCTTSCTTTTTCCTT
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHH-----------hCCCcceEEEEECCEEcCCCCCHHHcCCCCC
Confidence 45689999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CEEEEEeeecCCCc
Q psy4523 90 DTIEIYQQQTGGFK 103 (126)
Q Consensus 90 D~Idv~~~Q~GG~~ 103 (126)
|+|+|+++|+||+.
T Consensus 89 D~Idv~~~q~GG~~ 102 (104)
T 1wz0_A 89 DTIDVFQQQTSGPS 102 (104)
T ss_dssp EEEEECCCCCCCSS
T ss_pred CEEEEEEeccCCCC
Confidence 99999999999975
No 7
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.9e-28 Score=186.94 Aligned_cols=90 Identities=42% Similarity=0.685 Sum_probs=78.6
Q ss_pred ccccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCcc
Q psy4523 3 EEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPS 82 (126)
Q Consensus 3 ~~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~ 82 (126)
+++||..+++++|+|+|. ++|.+++|+|+++|||++||++||++ .|++++++||+|||++|.+++||+
T Consensus 46 ~d~KP~~dp~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcER-----------qGL~~~sIRFLFDGqRI~~ddTPe 113 (207)
T 3tix_A 46 PEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLTFLYDGIEIQADQTPE 113 (207)
T ss_dssp ---------CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHH-----------TTCCGGGSCEEETTEECCSSCCTT
T ss_pred CCCCCCCCCCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHH-----------hCCCcccEEEEECCeecCCCCCHH
Confidence 455665567899999997 58999999999999999999999999 999999999999999999999999
Q ss_pred ccCCCCCCEEEEEeeecCCCcC
Q psy4523 83 TLEMEEGDTIEIYQQQTGGFKQ 104 (126)
Q Consensus 83 dL~MeDGD~Idv~~~Q~GG~~~ 104 (126)
+|+|||||+|||+++|+||+..
T Consensus 114 DLdMEDGDtIDV~leQ~GG~~~ 135 (207)
T 3tix_A 114 DLDMEDNDIIEAHREQIGGLPS 135 (207)
T ss_dssp TTTCCTTEEEEECCCCCTTGGG
T ss_pred HcCCCCCCEEEEEEeccCCCcc
Confidence 9999999999999999999875
No 8
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=165.69 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=74.2
Q ss_pred CCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCC
Q psy4523 7 ESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEM 86 (126)
Q Consensus 7 ~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~M 86 (126)
++++.+.+|+|+|++ +|.+++|+||++|||+|||++||++ .|++++++||+|||.||++++||++|+|
T Consensus 14 ~~~~~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r-----------~gv~~~sirFlfDG~rI~~~~TP~~L~m 81 (95)
T 2l76_A 14 TLPETPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATH-----------LGVSPSRILLLFGETELSPTATPRTLKL 81 (95)
T ss_dssp CCCSCCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHH-----------HTSCGGGEEEEETTEECCTTSCHHHHTC
T ss_pred CCCCCCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhh-----------cCCChhhEEEEECCcCCCCCCCHhHcCC
Confidence 346678889999995 7999999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCEEEEEee
Q psy4523 87 EEGDTIEIYQQ 97 (126)
Q Consensus 87 eDGD~Idv~~~ 97 (126)
||||+|||++-
T Consensus 82 eD~DiID~~~~ 92 (95)
T 2l76_A 82 GVADIIDCVVL 92 (95)
T ss_dssp CSSCEEEEEEC
T ss_pred CCCCEEEEEEe
Confidence 99999999863
No 9
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.94 E-value=1.7e-27 Score=169.46 Aligned_cols=86 Identities=40% Similarity=0.716 Sum_probs=80.5
Q ss_pred CCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCC
Q psy4523 7 ESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEM 86 (126)
Q Consensus 7 ~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~M 86 (126)
+..+++++|+|+|++++|.+++|+|+++++|++||++||++ .|++++++||+|||++|.+++||++|+|
T Consensus 19 ~~~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek-----------~gi~~~~~rfiFdG~~L~~~~Tp~dl~m 87 (110)
T 2k8h_A 19 TCKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKK-----------QGISRNSVRFLFDGTPIDETKTPEELGM 87 (110)
T ss_dssp CCCCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHH-----------HTCCSSSCEEESSSCBCCSSSHHHHHHC
T ss_pred CCCCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-----------hCCCcccEEEEECCEEcCCCCCHHHcCC
Confidence 34566789999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCEEEEEeeecCCCc
Q psy4523 87 EEGDTIEIYQQQTGGFK 103 (126)
Q Consensus 87 eDGD~Idv~~~Q~GG~~ 103 (126)
||||+|+|++.|+||--
T Consensus 88 EDgD~Idv~~~q~Gg~~ 104 (110)
T 2k8h_A 88 EDDDVIDAMVEQTGGLE 104 (110)
T ss_dssp SSEEEEEEECCCCCC--
T ss_pred CCCCEEEEEEcccCccc
Confidence 99999999999999853
No 10
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.7e-27 Score=181.85 Aligned_cols=89 Identities=44% Similarity=0.679 Sum_probs=78.8
Q ss_pred ccccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCcc
Q psy4523 3 EEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPS 82 (126)
Q Consensus 3 ~~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~ 82 (126)
+++||..+++++|+|+|+ ++|.+++|+|+++|||++||++||++ .|++++++||+|||++|.+++||+
T Consensus 18 ~~~kp~~~~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er-----------~Gi~~~~~RF~FdG~rI~~~~TP~ 85 (200)
T 3pge_A 18 PEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGIRIQADQTPE 85 (200)
T ss_dssp -------CCCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHH-----------HSSCGGGEEEEETTEECCTTCCTT
T ss_pred cccCCCCCCCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHH-----------hCCChhhEEEEECCEEcCCCCCHH
Confidence 345565567899999997 58999999999999999999999999 999999999999999999999999
Q ss_pred ccCCCCCCEEEEEeeecCCCc
Q psy4523 83 TLEMEEGDTIEIYQQQTGGFK 103 (126)
Q Consensus 83 dL~MeDGD~Idv~~~Q~GG~~ 103 (126)
+|+|||||+|+|+++|+||.+
T Consensus 86 dL~MEdgD~Idv~~~q~gg~k 106 (200)
T 3pge_A 86 DLDMEDNDIIEAHREQIGGGG 106 (200)
T ss_dssp TTTCCTTEEEEEEECCSCCC-
T ss_pred HcCCCCCCEEEEEeccCcCcC
Confidence 999999999999999999976
No 11
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=161.47 Aligned_cols=76 Identities=32% Similarity=0.651 Sum_probs=72.8
Q ss_pred CCCCCcEEEEEEeccCC-EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCC
Q psy4523 9 KSTDEHINLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEME 87 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g~-~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~Me 87 (126)
.+++++|+|+|++++|. +++|+|+++|||++||++||++ .|++++++||+|||.+|.+++||++|+||
T Consensus 20 ~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~-----------~g~~~~~vrF~FDG~rI~~~~TP~dLdME 88 (97)
T 2jxx_A 20 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEA-----------MGLSGRKLSFFFDGTKLSGRELPADLGME 88 (97)
T ss_dssp CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHH-----------TTCSSSCCEEEETTEECCSCSCHHHHTCC
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHH-----------HCCCcccEEEEECCEEcCCCCCHHHcCCC
Confidence 45678999999999995 8999999999999999999999 99999999999999999999999999999
Q ss_pred CCCEEEEE
Q psy4523 88 EGDTIEIY 95 (126)
Q Consensus 88 DGD~Idv~ 95 (126)
|||+|||+
T Consensus 89 DgD~IDv~ 96 (97)
T 2jxx_A 89 SGDLIEVW 96 (97)
T ss_dssp TTEEEEEE
T ss_pred CCCEEEEe
Confidence 99999997
No 12
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=99.93 E-value=4.5e-28 Score=190.10 Aligned_cols=105 Identities=39% Similarity=0.656 Sum_probs=9.9
Q ss_pred ccccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCcc
Q psy4523 3 EEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPS 82 (126)
Q Consensus 3 ~~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~ 82 (126)
-|-||..+++++|+|+| +++|.+++|+|+++|||+|||++||++ .|++++++||+|||++|.+++||+
T Consensus 10 ~~~~~~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcER-----------qGLs~~siRFLFDGqRI~dddTPa 77 (227)
T 3v7o_A 10 GEVKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGIRIQADQTPE 77 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccCCCCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHH-----------hCCCccceEEEECCEecCCCCCHH
Confidence 34566677899999999 889999999999999999999999999 999999999999999999999999
Q ss_pred ccCCCCCCEEEEEeeecCCCcC---CCceeeecc-CCCCCC
Q psy4523 83 TLEMEEGDTIEIYQQQTGGFKQ---TPQLQIWHT-ESNMLD 119 (126)
Q Consensus 83 dL~MeDGD~Idv~~~Q~GG~~~---~~~~~~~~~-~~~~~~ 119 (126)
+|+|||||+|||+++|+||+.- -.-|.-||+ +-+.++
T Consensus 78 dL~MEDGDtIDV~leQ~GG~~~~~l~~~a~~~~~~~~~~~~ 118 (227)
T 3v7o_A 78 DLDMEDNDIIEAHREQIGGLTLAVLLQIAEHWATRDLRQIE 118 (227)
T ss_dssp ------------------CCCHHHHHHHHHHHHTCCCTTCC
T ss_pred HcCCCCCCEEEEEecccCCchHhHHHHHHHHHHhchhhhcc
Confidence 9999999999999999999762 224456776 444443
No 13
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.93 E-value=9.3e-26 Score=148.05 Aligned_cols=72 Identities=72% Similarity=1.140 Sum_probs=70.0
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id 93 (126)
+|+|+|++++|++++|+|+++++|++||++||++ .|++++++||+|||++|.+++||++|+|||||+|+
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~-----------~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Id 69 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTID 69 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHH-----------HTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-----------hCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEE
Confidence 5899999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred EEe
Q psy4523 94 IYQ 96 (126)
Q Consensus 94 v~~ 96 (126)
|++
T Consensus 70 v~~ 72 (72)
T 1wm3_A 70 VFQ 72 (72)
T ss_dssp EEC
T ss_pred EEC
Confidence 974
No 14
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.93 E-value=1.4e-25 Score=150.07 Aligned_cols=76 Identities=29% Similarity=0.599 Sum_probs=72.6
Q ss_pred CCCCCcEEEEEEeccCC-EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCC
Q psy4523 9 KSTDEHINLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEME 87 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g~-~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~Me 87 (126)
+..+++|+|+|++++|+ +++|+|+++++|++||++||++ .|++++++||+|||++|.+++||++|+||
T Consensus 2 p~~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~-----------~gi~~~~~rf~fdG~~l~~~~Tp~~l~me 70 (79)
T 3a4r_A 2 PLGSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEA-----------MGLSGHKLSFFFDGTKLSGKELPADLGLE 70 (79)
T ss_dssp TTCCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHH-----------HTCTTCCCEEEETTEECCSCCCHHHHTCC
T ss_pred CCCCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHH-----------hCCCcccEEEEECCEEcCCCCCHHHcCCC
Confidence 45678999999999996 8999999999999999999999 99999999999999999999999999999
Q ss_pred CCCEEEEE
Q psy4523 88 EGDTIEIY 95 (126)
Q Consensus 88 DGD~Idv~ 95 (126)
|||+|||+
T Consensus 71 dgD~Idv~ 78 (79)
T 3a4r_A 71 SGDLIEVW 78 (79)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEe
Confidence 99999997
No 15
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.91 E-value=4.4e-24 Score=165.07 Aligned_cols=89 Identities=44% Similarity=0.686 Sum_probs=79.4
Q ss_pred cccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccc
Q psy4523 4 EKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPST 83 (126)
Q Consensus 4 ~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~d 83 (126)
|-+|....+++|+|||++ +|.+++|+|+++|||++||++||++ .|++.+++||+|||++|++++||++
T Consensus 11 ~~~~~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~-----------~g~~~~~~~f~fdG~~i~~~~Tpk~ 78 (209)
T 3uf8_A 11 EVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGIRIQADQTPED 78 (209)
T ss_dssp -------CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHH-----------HTCCGGGCEEEETTEECCTTCCTTT
T ss_pred cccceeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHh-----------hCCChheEEEEECCEeccCCCChHH
Confidence 445667788999999998 7899999999999999999999999 9999999999999999999999999
Q ss_pred cCCCCCCEEEEEeeecCCCcC
Q psy4523 84 LEMEEGDTIEIYQQQTGGFKQ 104 (126)
Q Consensus 84 L~MeDGD~Idv~~~Q~GG~~~ 104 (126)
|.|||||+|||+.+|+||+.+
T Consensus 79 L~~ed~d~I~~~~eq~Gg~t~ 99 (209)
T 3uf8_A 79 LDMEDNDIIEAHREQIGGSTV 99 (209)
T ss_dssp TTCCTTEEEEEECSCTTCCCC
T ss_pred hhhcccccchhhccccccccc
Confidence 999999999999999999863
No 16
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=99.89 E-value=3.2e-25 Score=183.07 Aligned_cols=90 Identities=42% Similarity=0.663 Sum_probs=0.0
Q ss_pred cccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccc
Q psy4523 4 EKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPST 83 (126)
Q Consensus 4 ~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~d 83 (126)
+++|..+.+++|+|+|++ +|.+++|+|++++||++||++||++ .|++.+++||+|||++|.+++||++
T Consensus 20 ~~~~~~~~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~-----------~g~~~~~~~f~f~G~~i~~~~Tp~~ 87 (389)
T 4da1_A 20 EVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGIRIQADQAPED 87 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHH-----------hCCCcceEEEEECCEEcCCCCCHHH
Confidence 345555578999999998 7889999999999999999999999 9999999999999999999999999
Q ss_pred cCCCCCCEEEEEeeecCCCcCC
Q psy4523 84 LEMEEGDTIEIYQQQTGGFKQT 105 (126)
Q Consensus 84 L~MeDGD~Idv~~~Q~GG~~~~ 105 (126)
|+|||||+|+|+++|+||+..+
T Consensus 88 l~med~d~i~~~~~q~gg~n~~ 109 (389)
T 4da1_A 88 LDMEDNDIIEAHREQIGGENLY 109 (389)
T ss_dssp ----------------------
T ss_pred cCCCCCCEeeeeeccccccccc
Confidence 9999999999999999998754
No 17
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=99.88 E-value=1e-24 Score=181.51 Aligned_cols=91 Identities=43% Similarity=0.692 Sum_probs=2.4
Q ss_pred ccccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCcc
Q psy4523 3 EEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPS 82 (126)
Q Consensus 3 ~~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~ 82 (126)
-|-|+...++++|+|+|++ +|.+++|+|++++||++||++||++ .|++++++||+|||++|.+++||+
T Consensus 10 ~~~~~~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r-----------~G~~~~~~rFlFdG~rI~~~~TP~ 77 (360)
T 3ix6_A 10 GEVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDGIRIQADQTPE 77 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccCCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHH-----------hCCCcceEEEEECCeECCCCCChH
Confidence 3455667788999999998 6889999999999999999999999 999999999999999999999999
Q ss_pred ccCCCCCCEEEEEeeecCCCcCC
Q psy4523 83 TLEMEEGDTIEIYQQQTGGFKQT 105 (126)
Q Consensus 83 dL~MeDGD~Idv~~~Q~GG~~~~ 105 (126)
+|+|||||+|||+++|+||...+
T Consensus 78 ~L~MEDgD~Idv~~~Q~g~~~~Y 100 (360)
T 3ix6_A 78 DLDMEDNDIIEAHREQIGGMRTY 100 (360)
T ss_dssp -------------------CHHH
T ss_pred HcCCCccchhhhhhccCchHHHH
Confidence 99999999999999999997644
No 18
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.83 E-value=2.4e-20 Score=126.20 Aligned_cols=74 Identities=19% Similarity=0.458 Sum_probs=69.7
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccc-eeEEEECCeecCCCCCccccCCCCCCE
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMS-TVRFRFDGQAINEQDTPSTLEMEEGDT 91 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~-~~rF~fdG~rL~~~~TP~dL~MeDGD~ 91 (126)
..|++-+++.....++|+|++++++.+||++||++ .|++++ .++|.|||.||.+++||+|++|+|||.
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~-----------~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~ 76 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTE-----------VKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQ 76 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHH-----------HTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCE
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHH-----------cCCCcCceEEEEEcCcccCccCChhhhCCcCCce
Confidence 47899999888788999999999999999999999 999998 999999999999999999999999999
Q ss_pred EEEEee
Q psy4523 92 IEIYQQ 97 (126)
Q Consensus 92 Idv~~~ 97 (126)
|||+++
T Consensus 77 IDvmL~ 82 (82)
T 3goe_A 77 VSVVLD 82 (82)
T ss_dssp EEEEC-
T ss_pred eeeeeC
Confidence 999874
No 19
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.80 E-value=2.1e-19 Score=123.13 Aligned_cols=87 Identities=49% Similarity=0.833 Sum_probs=77.2
Q ss_pred cccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccc
Q psy4523 4 EKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPST 83 (126)
Q Consensus 4 ~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~d 83 (126)
++++.++.+..|.|+|++.+|+.+.|.|++++++..|+++|+++ .|++++.+||+|+|++|.++.|+++
T Consensus 11 ~~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~-----------~gip~~~qrLif~Gk~L~d~~tl~d 79 (97)
T 1wyw_B 11 EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEGQRIADNHTPKE 79 (97)
T ss_dssp --------CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTCCHHH
T ss_pred cccCCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCCChhhEEEEECCeEcCCCCCHHH
Confidence 34444567778999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCCCCCEEEEEeeecCC
Q psy4523 84 LEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 84 L~MeDGD~Idv~~~Q~GG 101 (126)
++|++||+|++++++.||
T Consensus 80 y~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 80 LGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp HTCCTTCEEEEEESSSCC
T ss_pred CCCCCCCEEEEEEecCCC
Confidence 999999999999999998
No 20
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.78 E-value=1.1e-18 Score=114.00 Aligned_cols=78 Identities=53% Similarity=0.908 Sum_probs=75.0
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I 92 (126)
+.|.|+|++.+|+.+.|+|++++++..|+++|+++ .|++++.+||+|+|++|.++.|+++++|+|||+|
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~-----------~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i 70 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI 70 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-----------HCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEE
Confidence 47999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEeeecCC
Q psy4523 93 EIYQQQTGG 101 (126)
Q Consensus 93 dv~~~Q~GG 101 (126)
++++++.||
T Consensus 71 ~l~~~~~GG 79 (79)
T 2uyz_B 71 EVYQEQTGG 79 (79)
T ss_dssp EEEECCCC-
T ss_pred EEEEeccCC
Confidence 999999998
No 21
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.53 E-value=8.3e-14 Score=91.79 Aligned_cols=83 Identities=14% Similarity=0.326 Sum_probs=78.4
Q ss_pred CCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCC
Q psy4523 8 SKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEME 87 (126)
Q Consensus 8 ~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~Me 87 (126)
+......|.|.|+..+|..+.+.|.+++++..|++.+++. .|++++.++|+|+|+.|.++.|..+++++
T Consensus 6 ~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gip~~~qrL~~~G~~L~d~~tL~~~~i~ 74 (88)
T 3dbh_I 6 SVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-----------EGIPPQQQRLIYSGKQMNDEKTAADYKIL 74 (88)
T ss_dssp CSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGCCEEETTEECCTTSBGGGGTCC
T ss_pred CCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH-----------HCcCHHHEEEEECCeECCCCCcHHHcCCC
Confidence 3456678999999989999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCEEEEEeeecCC
Q psy4523 88 EGDTIEIYQQQTGG 101 (126)
Q Consensus 88 DGD~Idv~~~Q~GG 101 (126)
+|++|++++++.||
T Consensus 75 ~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 75 GGSVLHLVLRLRGG 88 (88)
T ss_dssp TTCEEEECCCCCCC
T ss_pred CCCEEEEEEeCCCC
Confidence 99999999999998
No 22
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=1.3e-13 Score=90.14 Aligned_cols=80 Identities=11% Similarity=0.258 Sum_probs=72.0
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I 92 (126)
..|.|.|+..+|..+.+.|.+++++..|++.++++ .|++++.++|+|+|+.|.++.|.+++++++|++|
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i 70 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSAL 70 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEE
Confidence 36889999888999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEeeecCCCc
Q psy4523 93 EIYQQQTGGFK 103 (126)
Q Consensus 93 dv~~~Q~GG~~ 103 (126)
++++++.||..
T Consensus 71 ~l~~rl~GG~g 81 (85)
T 3n3k_B 71 YLLLKLRGGGG 81 (85)
T ss_dssp EEEECCC----
T ss_pred EEEEeccCCCC
Confidence 99999999964
No 23
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=4.8e-13 Score=87.26 Aligned_cols=80 Identities=13% Similarity=0.275 Sum_probs=74.6
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I 92 (126)
..|.|.|+..+|..+.+.|.+++++..|++.++++ .|++++.++|+|+|+.|.++.|.+++++++|++|
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l 70 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTL 70 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEE
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH-----------HCcChHHEEEEECCEECCCCCCHHHcCCCCCCEE
Confidence 46899999998999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEeeecCCCc
Q psy4523 93 EIYQQQTGGFK 103 (126)
Q Consensus 93 dv~~~Q~GG~~ 103 (126)
++.+++.||..
T Consensus 71 ~l~~r~~GG~g 81 (85)
T 3mtn_B 71 FLLLRLRGGGG 81 (85)
T ss_dssp EEECCCCCC--
T ss_pred EEEEECcCCCC
Confidence 99999999864
No 24
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=3.3e-13 Score=92.02 Aligned_cols=82 Identities=11% Similarity=0.277 Sum_probs=74.8
Q ss_pred CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523 9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE 88 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD 88 (126)
...+..|.|.|+..+|+.+.+.|.+++++..|++..+++ .|++++.+||+|+|+.|.++.|..++++++
T Consensus 17 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~ 85 (98)
T 4hcn_B 17 YFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 85 (98)
T ss_dssp -----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGCEEEETTEECCTTCBSGGGTCCT
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------hCCChhHEEEEECCEECCCCCcHHHCCCCC
Confidence 345567999999989999999999999999999999999 999999999999999999999999999999
Q ss_pred CCEEEEEeeecCC
Q psy4523 89 GDTIEIYQQQTGG 101 (126)
Q Consensus 89 GD~Idv~~~Q~GG 101 (126)
|++|++.+++.||
T Consensus 86 g~~i~l~~rl~GG 98 (98)
T 4hcn_B 86 ESTLHLVLRLRGG 98 (98)
T ss_dssp TEEEEEECBCSCC
T ss_pred CCEEEEEEecCCC
Confidence 9999999999998
No 25
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.47 E-value=4.8e-13 Score=85.23 Aligned_cols=76 Identities=14% Similarity=0.342 Sum_probs=70.5
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
+.|.|+..+|..+.+.+.+++++..|++.+++. .|++++.++|+|+|+.|.++.|.+++++++|++|++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~-----------~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l 69 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-----------EGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHL 69 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHH-----------HCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEE
Confidence 467888888998999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeeecCC
Q psy4523 95 YQQQTGG 101 (126)
Q Consensus 95 ~~~Q~GG 101 (126)
.+++.||
T Consensus 70 ~~~~~GG 76 (76)
T 1ndd_A 70 VLALRGG 76 (76)
T ss_dssp EECCC--
T ss_pred EEeCCCC
Confidence 9999997
No 26
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.47 E-value=6.2e-13 Score=84.71 Aligned_cols=76 Identities=12% Similarity=0.314 Sum_probs=72.0
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
+.|.|+..+|+.+.+.+.+++++..|++..++. .|++++.++|+|+|+.|.++.|.+++++++|++|++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~-----------~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l 69 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHL 69 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEE
Confidence 467788888998999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeeecCC
Q psy4523 95 YQQQTGG 101 (126)
Q Consensus 95 ~~~Q~GG 101 (126)
.+++.||
T Consensus 70 ~~~~~GG 76 (76)
T 3a9j_A 70 VLRLRGG 76 (76)
T ss_dssp EECCCCC
T ss_pred EEeCCCC
Confidence 9999998
No 27
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.45 E-value=1.2e-12 Score=85.05 Aligned_cols=77 Identities=10% Similarity=0.203 Sum_probs=73.5
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I 92 (126)
..+.|.|++.+|+.+.+.|.+++++..|++..+++ .|++++..||+|+|+.|.++.|.+++++++|++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l 71 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-----------EGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTV 71 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhh-----------cCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEE
Confidence 46899999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEeeecC
Q psy4523 93 EIYQQQTG 100 (126)
Q Consensus 93 dv~~~Q~G 100 (126)
++.+++.|
T Consensus 72 ~l~~rl~G 79 (79)
T 3phx_B 72 FMNLRLRG 79 (79)
T ss_dssp EEEECCBC
T ss_pred EEEEecCC
Confidence 99999876
No 28
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=7.8e-13 Score=87.23 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=76.0
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT 91 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~ 91 (126)
...|.|.|+..+|..+.+.|.+++++..|++.++++ .|++++.++|+|+|+.|.++.|.+++++++|++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~ 73 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQ-----------QGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDT 73 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHH-----------TCCCTTTEEEEETTEECCSSSBHHHHTCCTTEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHH-----------hCCChHHEEEEECCEEccCCCCHHHCCCCCCCE
Confidence 457999999988988899999999999999999999 999999999999999999999999999999999
Q ss_pred EEEEeeecCCC
Q psy4523 92 IEIYQQQTGGF 102 (126)
Q Consensus 92 Idv~~~Q~GG~ 102 (126)
|++.+++.||.
T Consensus 74 i~l~~~~~GG~ 84 (87)
T 1wh3_A 74 LILSKKKGSGP 84 (87)
T ss_dssp EEEEECSCCCS
T ss_pred EEEEEeccCCC
Confidence 99999999985
No 29
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.44 E-value=9.2e-13 Score=88.47 Aligned_cols=80 Identities=10% Similarity=0.243 Sum_probs=72.0
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
+.|.|+..+|..+.+.|.+++++..|++..+++ .|++++.++|+|+|+.|.++.|..++++++|++|++
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~-----------~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l 70 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 70 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhh-----------hCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEE
Confidence 567888888999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeeecCCCcCC
Q psy4523 95 YQQQTGGFKQT 105 (126)
Q Consensus 95 ~~~Q~GG~~~~ 105 (126)
++++.||....
T Consensus 71 ~~r~~gG~~~~ 81 (96)
T 3k9o_B 71 VLRLRGYADLR 81 (96)
T ss_dssp EECCCC-----
T ss_pred EEEcCCCCccc
Confidence 99999997743
No 30
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.42 E-value=1.5e-12 Score=87.15 Aligned_cols=83 Identities=13% Similarity=0.278 Sum_probs=70.6
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
+.|.|++.+|+.+.+.|.+++++..|++..+++ .|++++..||+|+|+.|.++.|.+++++++|++|.+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l 69 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEK-----------EGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHL 69 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH-----------HCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEE
Confidence 467788788999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeeecCCCcCCCce
Q psy4523 95 YQQQTGGFKQTPQL 108 (126)
Q Consensus 95 ~~~Q~GG~~~~~~~ 108 (126)
.+++.||....+.+
T Consensus 70 ~~rl~Gg~~~~~~~ 83 (88)
T 4fbj_B 70 VLALRGGGGLRQKH 83 (88)
T ss_dssp ECBCC---------
T ss_pred EEECCCCCCCCccc
Confidence 99999998866544
No 31
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.41 E-value=1.9e-12 Score=90.53 Aligned_cols=78 Identities=12% Similarity=0.294 Sum_probs=74.5
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I 92 (126)
..|.|.|+..+|+.+.+.|.+++++..|+..++++ .|++++.+||+|+|+.|.++.|..++++++|++|
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I 102 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 102 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-----------hCCChHHEEEEECCEECCCCCcHHHCCCCCCCEE
Confidence 47999999989999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEeeecCC
Q psy4523 93 EIYQQQTGG 101 (126)
Q Consensus 93 dv~~~Q~GG 101 (126)
++.+++.||
T Consensus 103 ~l~~rl~GG 111 (111)
T 3vdz_A 103 HLVLRLRGG 111 (111)
T ss_dssp EEEECCCC-
T ss_pred EEEEecCCC
Confidence 999999998
No 32
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=1.7e-12 Score=89.88 Aligned_cols=89 Identities=7% Similarity=0.132 Sum_probs=75.7
Q ss_pred cccCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccc
Q psy4523 4 EKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPST 83 (126)
Q Consensus 4 ~~~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~d 83 (126)
.+++....+..|.|.|+..+|+.+.+.|.+++++..|+...+++ .|++++.+||+|+|+.|.++.|..+
T Consensus 13 ~~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~ 81 (106)
T 1ttn_A 13 IPEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAA-----------EGVEPGSQRWFFSGRPLTDKMKFEE 81 (106)
T ss_dssp --------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHT-----------TCCCSTTCEEEETTEECCTTSHHHH
T ss_pred CCCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHH-----------HCcCcccEEEEECCEECCCCCcHHH
Confidence 35555667788999999988988899999999999999999999 9999999999999999999999999
Q ss_pred cCCCCCCEEEEEeeecCCCc
Q psy4523 84 LEMEEGDTIEIYQQQTGGFK 103 (126)
Q Consensus 84 L~MeDGD~Idv~~~Q~GG~~ 103 (126)
+++++|++|++++.+..+++
T Consensus 82 ygI~~g~ti~lv~~~~~~~~ 101 (106)
T 1ttn_A 82 LKIPKDYVVQVIVSQPVQNP 101 (106)
T ss_dssp CCCSSSCEEEEECCCSSCC-
T ss_pred cCCCCCCEEEEEEeCCCCCC
Confidence 99999999999998777654
No 33
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=7e-12 Score=83.07 Aligned_cols=82 Identities=11% Similarity=0.178 Sum_probs=76.1
Q ss_pred CCCcEEEEEEeccC-CEEEE-EecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523 11 TDEHINLKVLGQDN-NVVQF-KIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE 88 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g-~~v~f-kIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD 88 (126)
....+.|.|+..+| +.+.+ .|.+++++..|++..+++ .|++++.++|+|+|+.|.++.|.+++++++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~-----------~gip~~~qrL~~~gk~L~d~~tL~~~~i~~ 72 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWAL-----------FDVRPECQRLFYRGKQLENGYTLFDYDVGL 72 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHH-----------SCCCTTTEEEEETTEECCSSSBHHHHTCCT
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHH-----------HCcChhhEEEEECCeECCCCCCHHHCCCCC
Confidence 44679999998888 68889 599999999999999999 999999999999999999999999999999
Q ss_pred CCEEEEEeeecCCCc
Q psy4523 89 GDTIEIYQQQTGGFK 103 (126)
Q Consensus 89 GD~Idv~~~Q~GG~~ 103 (126)
|++|.+++++.||.+
T Consensus 73 g~~i~l~~~~~gG~~ 87 (89)
T 1wy8_A 73 NDIIQLLVRPDSGPS 87 (89)
T ss_dssp TCEEEEEECCCCSSC
T ss_pred CCEEEEEEeCCCCCC
Confidence 999999999999864
No 34
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.37 E-value=7.3e-12 Score=83.83 Aligned_cols=79 Identities=9% Similarity=0.219 Sum_probs=73.8
Q ss_pred CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523 9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE 88 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD 88 (126)
......|.|.|+..+|..+.+.|.+++++..|++..+++ .|++++.+||+|+|+.|.++.|..++++++
T Consensus 12 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~ 80 (91)
T 3v6c_B 12 LVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 80 (91)
T ss_dssp CCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGCEEEETTEECCTTCBTGGGTCCT
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhh-----------hCCChhhEEEEECCeECCCcCcHHHCCCCC
Confidence 345678999999989999999999999999999999999 999999999999999999999999999999
Q ss_pred CCEEEEEeee
Q psy4523 89 GDTIEIYQQQ 98 (126)
Q Consensus 89 GD~Idv~~~Q 98 (126)
|++|.+.++.
T Consensus 81 g~~i~l~~rl 90 (91)
T 3v6c_B 81 ESTLHLVLRL 90 (91)
T ss_dssp TCEEEEECCC
T ss_pred CCEEEEEEec
Confidence 9999998864
No 35
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=3.6e-12 Score=85.26 Aligned_cols=78 Identities=13% Similarity=0.272 Sum_probs=68.5
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id 93 (126)
-+.|.|+..+|+.+.+.|.+++++..|++..++. .|++++.+||+|+|+.|.++.|.+++++++|++|.
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~ 77 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 77 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHH-----------HCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEE
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHH-----------HCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEE
Confidence 4678888889999999999999999999999999 99999999999999999999999999999999999
Q ss_pred EEeeecCCC
Q psy4523 94 IYQQQTGGF 102 (126)
Q Consensus 94 v~~~Q~GG~ 102 (126)
+.+++.||.
T Consensus 78 l~~r~~GG~ 86 (88)
T 1sif_A 78 LVLRLRGGG 86 (88)
T ss_dssp EEC------
T ss_pred EEEeCCCCC
Confidence 999999985
No 36
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.37 E-value=6e-12 Score=87.71 Aligned_cols=78 Identities=12% Similarity=0.294 Sum_probs=74.2
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I 92 (126)
..+.|.|+..+|+.+.+.|.+++++..|++..+++ .|++++.++|+|+|+.|.++.|.+++++++|++|
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I 102 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 102 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHH-----------HCcCcccEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 57999999988998999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEeeecCC
Q psy4523 93 EIYQQQTGG 101 (126)
Q Consensus 93 dv~~~Q~GG 101 (126)
++.+++.||
T Consensus 103 ~l~~rl~GG 111 (111)
T 2ojr_A 103 HLVLRLRGG 111 (111)
T ss_dssp EEEECCCC-
T ss_pred EEEEeCCCC
Confidence 999999997
No 37
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.36 E-value=2.8e-12 Score=85.69 Aligned_cols=80 Identities=11% Similarity=0.236 Sum_probs=70.8
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I 92 (126)
..+.|.|+..+|+.+.+.|.+++++..|++..+++ .|++++..||+|+|+.|.++.|.+++++++|++|
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~-----------~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i 71 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-----------EGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTV 71 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHH-----------TCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEE
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHH-----------hCCChhHEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 36889999888999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEeeecCCCc
Q psy4523 93 EIYQQQTGGFK 103 (126)
Q Consensus 93 dv~~~Q~GG~~ 103 (126)
.+...+.||.-
T Consensus 72 ~l~~~~~gg~~ 82 (88)
T 2hj8_A 72 FMNLRLRGGLE 82 (88)
T ss_dssp EEEEC------
T ss_pred EEEEEcCCCcc
Confidence 99999999853
No 38
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.35 E-value=1e-11 Score=84.20 Aligned_cols=79 Identities=11% Similarity=0.293 Sum_probs=72.0
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
+.|.|+..+|+.+.+.|.+++++..|++.+++. .|++++.++|+|+|+.|.++.|.+++++.+|++|.+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~-----------~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l 69 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 69 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-----------TCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEE
Confidence 367788888888899999999999999999999 999999999999999999999999999999999999
Q ss_pred EeeecCCCcC
Q psy4523 95 YQQQTGGFKQ 104 (126)
Q Consensus 95 ~~~Q~GG~~~ 104 (126)
..+..||...
T Consensus 70 ~~~~~gG~~i 79 (98)
T 1yx5_B 70 VLRLRGGRDP 79 (98)
T ss_dssp EECCCCC---
T ss_pred EEeCCCCCcC
Confidence 9999988653
No 39
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.34 E-value=4.7e-12 Score=85.72 Aligned_cols=77 Identities=13% Similarity=0.219 Sum_probs=71.0
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT 91 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~ 91 (126)
...|.|.|++ |+.+.+.|.+++++..|++..+++ .|++++.++|+|+|+.|.++.|.+++++++|++
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gst 83 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASL-----------EGIAPEDQVVLLAGAPLEDEATLGQCGVEALTT 83 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHH-----------HTCCGGGCEEEETTEECCTTSBHHHHTCCSSCE
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHH-----------hCcChhHEEEEECCEECCCCCcHHHCCCCCCCE
Confidence 4468888887 788899999999999999999999 999999999999999999999999999999999
Q ss_pred EEEEeeecCC
Q psy4523 92 IEIYQQQTGG 101 (126)
Q Consensus 92 Idv~~~Q~GG 101 (126)
|.+.+++.||
T Consensus 84 I~lv~rl~GG 93 (93)
T 2l7r_A 84 LEVAGRMLGG 93 (93)
T ss_dssp EEEECCCCCC
T ss_pred EEEEEecCCC
Confidence 9999999998
No 40
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.32 E-value=8.6e-12 Score=84.10 Aligned_cols=81 Identities=15% Similarity=0.285 Sum_probs=76.0
Q ss_pred CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD 90 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD 90 (126)
....|.|.|+.. |..+.+.|.+++++..|++.++++ .|++++.+||+|.|+.|.++.|..++++++|+
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~-----------~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~ 81 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKY-----------LHCNADRLVLIFTGKILRDQDILSQRGILDGS 81 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHH-----------TCSCTTTBCCEETTEECCTTSCHHHHTCCTTE
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHH-----------hCCCHHHEEEEECCEECCCcCCHHHCCCCCCC
Confidence 456899999987 888999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEeeecCCCc
Q psy4523 91 TIEIYQQQTGGFK 103 (126)
Q Consensus 91 ~Idv~~~Q~GG~~ 103 (126)
+|++++++.||..
T Consensus 82 ~i~l~~~~~~g~~ 94 (96)
T 1wx8_A 82 TVHVVVRSHSGPS 94 (96)
T ss_dssp EEECCBCCSSCSS
T ss_pred EEEEEEeCCCCCC
Confidence 9999999998854
No 41
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-11 Score=79.25 Aligned_cols=78 Identities=14% Similarity=0.262 Sum_probs=72.3
Q ss_pred CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523 9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE 88 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD 88 (126)
...+..|.|.|+..+|+.+.+.+.+++++..|++..++. .|++++.++++|+|+.|.++.|.+++++++
T Consensus 2 ~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~-----------~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~ 70 (81)
T 2dzi_A 2 SSGSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEK-----------LNVPVRQQRLLFKGKALADGKRLSDYSIGP 70 (81)
T ss_dssp CCSSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHH-----------TCCCTTTCEEEETTEECCTTSBGGGGTCCS
T ss_pred CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHEEEEECCeECCCCCcHHHcCCCC
Confidence 345678999999888988899999999999999999999 999999999999999999999999999999
Q ss_pred CCEEEEEee
Q psy4523 89 GDTIEIYQQ 97 (126)
Q Consensus 89 GD~Idv~~~ 97 (126)
|++|+++++
T Consensus 71 g~~i~l~~~ 79 (81)
T 2dzi_A 71 NSKLNLVVK 79 (81)
T ss_dssp SBCCEEECC
T ss_pred CCEEEEEEe
Confidence 999999875
No 42
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.32 E-value=2.6e-11 Score=80.55 Aligned_cols=80 Identities=9% Similarity=0.235 Sum_probs=73.0
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT 91 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~ 91 (126)
+..|.|.|+..+|..+.+.|.+++++..|++..+++ .|++++..||+|+|+.|.++.|..++++ +|++
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~ 70 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAAS-----------VSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKV 70 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTSBGGGGTC-TTEE
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH-----------hCCCHHHEEEEECCeECCCCCCHHHcCC-CCcE
Confidence 457999999999999999999999999999999999 9999999999999999999999999999 8999
Q ss_pred EEEEeeecCCCc
Q psy4523 92 IEIYQQQTGGFK 103 (126)
Q Consensus 92 Idv~~~Q~GG~~ 103 (126)
|+++++..++..
T Consensus 71 i~l~~~~~~~~~ 82 (90)
T 4dwf_A 71 IHLVERAPPQTH 82 (90)
T ss_dssp EEEEECCCC---
T ss_pred EEEEecCCCCCC
Confidence 999999776654
No 43
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=3.6e-11 Score=86.04 Aligned_cols=81 Identities=15% Similarity=0.263 Sum_probs=71.2
Q ss_pred CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD 90 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD 90 (126)
....|+|.|+.. |..+.+.|.+++++..|++.+++. .|++++.+||+|+|+.|.++.|..++++++|+
T Consensus 29 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gs 96 (125)
T 1j8c_A 29 EPKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKR-----------FKSQTDQLVLIFAGKILKDQDTLIQHGIHDGL 96 (125)
T ss_dssp CCCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHH-----------HCSCSSSEEEEETTEEESTTSCGGGTTCSSSE
T ss_pred CCCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHH-----------HCcCcceEEEEECCEEcCCCCCHHHcCCCCCC
Confidence 356799999988 888899999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEeeecCCCc
Q psy4523 91 TIEIYQQQTGGFK 103 (126)
Q Consensus 91 ~Idv~~~Q~GG~~ 103 (126)
+|.++..+.||..
T Consensus 97 tI~lv~~~~gg~~ 109 (125)
T 1j8c_A 97 TVHLVIKRDPNSS 109 (125)
T ss_dssp EEEEEEC------
T ss_pred EEEEEeccCCCCC
Confidence 9999999998866
No 44
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=4e-11 Score=82.62 Aligned_cols=83 Identities=12% Similarity=0.235 Sum_probs=75.8
Q ss_pred CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD 90 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD 90 (126)
....|.|+|+...|. +.+.|..++++..|++..+++ .|++++.+||+|+|+.|.++.|..++++++|+
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~ 81 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQR-----------FKAHPDQLVLIFAGKILKDPDSLAQCGVRDGL 81 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHH-----------HTCCTTTEEEEETTEECCTTSCHHHHTCCTTE
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHH-----------HCcChhhEEEEECCEECCCcCcHHHcCCCCCC
Confidence 356799999987775 689999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEeeecCCCcCC
Q psy4523 91 TIEIYQQQTGGFKQT 105 (126)
Q Consensus 91 ~Idv~~~Q~GG~~~~ 105 (126)
+|++++++.||....
T Consensus 82 ~i~l~~~~~~~~~~~ 96 (106)
T 1wx7_A 82 TVHLVIKRQHRAMGN 96 (106)
T ss_dssp EEEEEECCCCCSCCC
T ss_pred EEEEEEcCCCCCCCC
Confidence 999999999886643
No 45
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.27 E-value=3.9e-11 Score=87.05 Aligned_cols=81 Identities=12% Similarity=0.229 Sum_probs=73.3
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT 91 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~ 91 (126)
+..|.|.|++.+|+.+.+.|.+++++..|++..+++ .|++++..+|+|+|+.|.++.|.+++++++|++
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~ 147 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL-----------EGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLST 147 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTSBGGGGTCCTTCE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHH-----------HCCCHHHEEEEECCeecCCCCCHHHcCCCCCCE
Confidence 345888888888999999999999999999999999 999999999999999999999999999999999
Q ss_pred EEEEeeecCCCc
Q psy4523 92 IEIYQQQTGGFK 103 (126)
Q Consensus 92 Idv~~~Q~GG~~ 103 (126)
|++.++..||++
T Consensus 148 l~l~~rl~GG~r 159 (159)
T 3rt3_B 148 VFMNLRLRGGGR 159 (159)
T ss_dssp EEEEECCC----
T ss_pred EEEEEecCCCCC
Confidence 999999999963
No 46
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.27 E-value=4.4e-11 Score=85.12 Aligned_cols=77 Identities=12% Similarity=0.307 Sum_probs=72.3
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id 93 (126)
.+.|.|+..+|..+.+.+.+++++..|++.++++ .|++++..+|+|+|+.|.++.|.+++++++|++|+
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~-----------~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~ 144 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 144 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHH-----------hCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEE
Confidence 4677888888999999999999999999999999 99999999999999999999999999999999999
Q ss_pred EEeeecCC
Q psy4523 94 IYQQQTGG 101 (126)
Q Consensus 94 v~~~Q~GG 101 (126)
+.+++.||
T Consensus 145 l~~r~~GG 152 (152)
T 3b08_A 145 LVLRLRGG 152 (152)
T ss_dssp EEECCCC-
T ss_pred EEEecCCC
Confidence 99999998
No 47
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=4.8e-11 Score=80.77 Aligned_cols=89 Identities=6% Similarity=0.170 Sum_probs=77.2
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
+.|.|+..+|+.+.+.|.+++++..|++..++.+.. .|++++.+||+|+|+.|.++.|.+++++++|++|.+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~--------~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l 72 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGK--------DAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVV 72 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCT--------TTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhccc--------CCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEE
Confidence 467788778999999999999999999999988110 368999999999999999999999999999999999
Q ss_pred EeeecCCCcCCCceeee
Q psy4523 95 YQQQTGGFKQTPQLQIW 111 (126)
Q Consensus 95 ~~~Q~GG~~~~~~~~~~ 111 (126)
.+....|.+..++|.|=
T Consensus 73 ~~~~~~~~~~~~~~~~~ 89 (95)
T 1uel_A 73 MVTKPKAVSTPAPATLE 89 (95)
T ss_dssp EESSCCCCCCCCCGGGG
T ss_pred EEeCCCCCCCCCccccc
Confidence 99887777777777763
No 48
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.25 E-value=7.9e-11 Score=75.42 Aligned_cols=72 Identities=10% Similarity=0.362 Sum_probs=67.4
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
|.|.|+. +|..+.+.+.+++++..|++..++. .|++++.++|+|+|+.|.++.|.+++++++|++|++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~-----------~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l 72 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKA-----------NGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHL 72 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH-----------hCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEE
Confidence 7888888 7888889999999999999999999 999999999999999999999999999999999999
Q ss_pred Eeee
Q psy4523 95 YQQQ 98 (126)
Q Consensus 95 ~~~Q 98 (126)
...+
T Consensus 73 ~~~~ 76 (77)
T 2bwf_A 73 VKSQ 76 (77)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8654
No 49
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.24 E-value=6.8e-11 Score=80.41 Aligned_cols=84 Identities=11% Similarity=0.190 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCC-CCccccCC
Q psy4523 8 SKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQ-DTPSTLEM 86 (126)
Q Consensus 8 ~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~-~TP~dL~M 86 (126)
|......|.|.|++..+ .+.+.|.+++++..|++..++. .|++++.+|++|.|+.|.++ .|.+++++
T Consensus 9 ~~~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~~tL~~ygI 76 (94)
T 2kan_A 9 SHAAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIV-----------ENTPIKRMQLYYSGIELADDYRNLNEYGI 76 (94)
T ss_dssp SCSSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHH-----------SSSCTTTEEEEETTEEECCTTSBHHHHTC
T ss_pred cccCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHEEEEECCEECCCCcccHHHCCC
Confidence 34556779999998766 7889999999999999999999 99999999999999999999 99999999
Q ss_pred CCCCEEEEEeeecCCCc
Q psy4523 87 EEGDTIEIYQQQTGGFK 103 (126)
Q Consensus 87 eDGD~Idv~~~Q~GG~~ 103 (126)
++|++|.+.++..||..
T Consensus 77 ~~gstl~lv~r~~gg~~ 93 (94)
T 2kan_A 77 TEFSEIVVFLKSINRAK 93 (94)
T ss_dssp CTTEEEEEEECCCSSCC
T ss_pred CCCCEEEEEEeCCCCCC
Confidence 99999999999999863
No 50
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.24 E-value=9.8e-11 Score=75.59 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=68.8
Q ss_pred cEEEEEEeccCCEE-EEE-ecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523 14 HINLKVLGQDNNVV-QFK-IKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT 91 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v-~fk-Ik~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~ 91 (126)
.+.|.|+..+|+.+ .+. +.+++++..|++..++. .|++++..|++|+|+.|.++.|.+++++++|++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~-----------~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~ 70 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQEL-----------FHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDT 70 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTCBTTTTTCCTTCE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHH-----------HCcChhhEEEEECCEECCCCCCHHHcCCCCCCE
Confidence 47888888888886 798 99999999999999999 999999999999999999999999999999999
Q ss_pred EEEEeee
Q psy4523 92 IEIYQQQ 98 (126)
Q Consensus 92 Idv~~~Q 98 (126)
|.+.+++
T Consensus 71 i~l~~r~ 77 (78)
T 2faz_A 71 IQLLVRQ 77 (78)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 9998764
No 51
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.24 E-value=8.8e-11 Score=81.24 Aligned_cols=76 Identities=11% Similarity=0.162 Sum_probs=70.6
Q ss_pred CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523 10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG 89 (126)
Q Consensus 10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG 89 (126)
...+-|.|.|.+..|+.+.+++.+++++..|++..+++ .|+++++.|+.|.|+.|.++.|.+++++.||
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k-----------~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dg 85 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQ-----------IGTQPNKIVLQKGGSVLKDHISLEDYEVHDQ 85 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTSBTGGGTCCTT
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHH-----------hCCCHHHEEEEeCCEEccCcCCHHHcCCCCC
Confidence 44678999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CEEEEEe
Q psy4523 90 DTIEIYQ 96 (126)
Q Consensus 90 D~Idv~~ 96 (126)
++|+.+.
T Consensus 86 stLhL~~ 92 (93)
T 3plu_A 86 TNLELYY 92 (93)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9999874
No 52
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.8e-10 Score=80.96 Aligned_cols=80 Identities=9% Similarity=0.243 Sum_probs=74.6
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
..|.|+..+|..+.+.|.+++++..|++..++. .|++++.+||+|+|+.|.++.|.+++++++|++|.+
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l 78 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDK-----------EGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHL 78 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEE
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHH-----------HCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEE
Confidence 567777788999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeeecCCCcCC
Q psy4523 95 YQQQTGGFKQT 105 (126)
Q Consensus 95 ~~~Q~GG~~~~ 105 (126)
...+.||....
T Consensus 79 ~~~~~GG~~~~ 89 (114)
T 2kdi_A 79 VLRLRGGSMGG 89 (114)
T ss_dssp EECCCSSCCCS
T ss_pred EEEcCCCceee
Confidence 99999997643
No 53
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.21 E-value=1e-10 Score=80.31 Aligned_cols=81 Identities=12% Similarity=0.256 Sum_probs=73.9
Q ss_pred CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523 10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG 89 (126)
Q Consensus 10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG 89 (126)
..+..|.|.|+...|. ..+.|.+++++..|++..+++ .|++++.++|+|+|+.|.++.|.+++++++|
T Consensus 18 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~g 85 (100)
T 1yqb_A 18 GSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQR-----------FKAHPDQLVLIFAGKILKDPDSLAQCGVRDG 85 (100)
T ss_dssp CCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTSBHHHHTCCTT
T ss_pred CCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHH-----------HCcChhhEEEEECCEECCCcCcHHHCCCCCC
Confidence 3456799999988775 689999999999999999999 9999999999999999999999999999999
Q ss_pred CEEEEEeeecCCC
Q psy4523 90 DTIEIYQQQTGGF 102 (126)
Q Consensus 90 D~Idv~~~Q~GG~ 102 (126)
++|.+.++..||-
T Consensus 86 stI~l~~r~~~~p 98 (100)
T 1yqb_A 86 LTVHLVIKRQHRA 98 (100)
T ss_dssp CEEEEEECCCCSC
T ss_pred CEEEEEEcCCCCC
Confidence 9999999987763
No 54
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.20 E-value=2.4e-10 Score=78.54 Aligned_cols=81 Identities=14% Similarity=0.256 Sum_probs=71.1
Q ss_pred CCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCC
Q psy4523 7 ESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEM 86 (126)
Q Consensus 7 ~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~M 86 (126)
........|.|.|+.. |..+.+.|.+++++..|++..++. .|++++.++|+|+|+.|.++.|.+++++
T Consensus 18 ~~~~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~~gI 85 (101)
T 2klc_A 18 YFQGHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKR-----------FKSHTDQLVLIFAGKILKDQDTLSQHGI 85 (101)
T ss_dssp -----CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHH-----------HTCCGGGEEEEETTEEECTTCCTGGGTC
T ss_pred ccCCCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHH-----------HCcChhhEEEEECCEECCCcCcHHHcCC
Confidence 3344567899999987 888899999999999999999999 9999999999999999999999999999
Q ss_pred CCCCEEEEEeeec
Q psy4523 87 EEGDTIEIYQQQT 99 (126)
Q Consensus 87 eDGD~Idv~~~Q~ 99 (126)
++|++|.+.....
T Consensus 86 ~~g~~I~l~~~~~ 98 (101)
T 2klc_A 86 HDGLTVHLVIKTQ 98 (101)
T ss_dssp CTTCEEEEEECCS
T ss_pred CCCCEEEEEEcCC
Confidence 9999999988754
No 55
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.18 E-value=1.3e-10 Score=78.19 Aligned_cols=82 Identities=16% Similarity=0.235 Sum_probs=73.1
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCC-CCccccCCCCCC
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQ-DTPSTLEMEEGD 90 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~-~TP~dL~MeDGD 90 (126)
...|.|.|+..+|..+.+.|.+++++..|++.++++ . ++.+||+|.|+.|.++ .|.+++++++|+
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~-----------~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~ 70 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPG-----------Q---ESQMKLIYQGRLLQDPARTLSSLNITNNC 70 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSS-----------T---TTTCEEEETTEECCCSSCBTTTTTCCTTE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhh-----------C---cCcEEEEECCEEccCCcCCHHHcCCCCCC
Confidence 457999999888888899999999999999999988 5 8899999999999999 999999999999
Q ss_pred EEEEEeeecCCCcCCCc
Q psy4523 91 TIEIYQQQTGGFKQTPQ 107 (126)
Q Consensus 91 ~Idv~~~Q~GG~~~~~~ 107 (126)
+|++++.+.+.....+.
T Consensus 71 ~i~l~~~~~~~~~~~~~ 87 (95)
T 1wia_A 71 VIHCHRSPPGAAVSGPS 87 (95)
T ss_dssp EEEEECCCCCCCCCCCC
T ss_pred EEEEEECCCCCCCCCCC
Confidence 99999987776555433
No 56
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.18 E-value=1.4e-10 Score=86.62 Aligned_cols=79 Identities=11% Similarity=0.291 Sum_probs=72.1
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
+.|.|+..+|+.+.+.|.+++++..|++..+++ .|++++..|++|+|+.|.++.|..++++++|++|++
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~L 69 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 69 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-----------HCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-----------HCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEE
Confidence 467788888999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeeecCCCcC
Q psy4523 95 YQQQTGGFKQ 104 (126)
Q Consensus 95 ~~~Q~GG~~~ 104 (126)
.+++.||..-
T Consensus 70 vlrl~GG~k~ 79 (169)
T 3l0w_B 70 VLRLRGGGGE 79 (169)
T ss_dssp EECCCC---C
T ss_pred EEEecccccc
Confidence 9999999663
No 57
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.18 E-value=2.9e-10 Score=75.16 Aligned_cols=75 Identities=9% Similarity=0.269 Sum_probs=69.3
Q ss_pred CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD 90 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD 90 (126)
.+..|.|.|+..+|..+.+.|.+++++..|++..+++ .|++++..|++|.|+.|.++.|..++++ +|+
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~ 81 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAAS-----------VSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGK 81 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCTTSBGGGGTC-TTE
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHH-----------hCCCHHHEEEEECCEECCCCCcHHHcCC-CCc
Confidence 3457999999988999999999999999999999999 9999999999999999999999999999 899
Q ss_pred EEEEEee
Q psy4523 91 TIEIYQQ 97 (126)
Q Consensus 91 ~Idv~~~ 97 (126)
+|++.++
T Consensus 82 ~i~lv~R 88 (88)
T 4eew_A 82 VIHLVER 88 (88)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9998753
No 58
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.17 E-value=1.5e-10 Score=77.75 Aligned_cols=81 Identities=11% Similarity=0.167 Sum_probs=72.9
Q ss_pred CCcEEEEEEeccCC--EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhc--cCccceeEEEECCeecCCCCCcccc--C
Q psy4523 12 DEHINLKVLGQDNN--VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQ--NLSMSTVRFRFDGQAINEQDTPSTL--E 85 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~--~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~--gl~~~~~rF~fdG~rL~~~~TP~dL--~ 85 (126)
...|+|.|+..++. .+.+.+.+++++..|++..++. . |++++..|++|.|+.|.++.|.+++ +
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~-----------~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~ 73 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRV-----------YPERPRPEDQRLIYSGKLLLDHQCLRDLLPK 73 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHH-----------STTCCCTTTCEEEETTEECCSSSCHHHHSCS
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHH-----------hcCCCChHHeEEEECCEECcCcCCHHHHhcC
Confidence 45688999888776 5666677999999999999999 7 9999999999999999999999999 9
Q ss_pred CCCCCEEEEEeeecCCCc
Q psy4523 86 MEEGDTIEIYQQQTGGFK 103 (126)
Q Consensus 86 MeDGD~Idv~~~Q~GG~~ 103 (126)
+++|.+|++.+...||.+
T Consensus 74 i~~~~~i~lv~~~~gg~~ 91 (93)
T 1wgd_A 74 QEKRHVLHLVCNVKSGPS 91 (93)
T ss_dssp SSCSEEEEEECCCCCCCC
T ss_pred CCCCCEEEEEeCCCCCCC
Confidence 999999999999999854
No 59
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.13 E-value=2.7e-10 Score=79.16 Aligned_cols=79 Identities=6% Similarity=0.177 Sum_probs=74.5
Q ss_pred CcEEEEEEec---cCCEEEEEecC-CCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523 13 EHINLKVLGQ---DNNVVQFKIKK-GTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE 88 (126)
Q Consensus 13 ~~I~Ikv~~~---~g~~v~fkIk~-tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD 88 (126)
..|+|.|+.. +|..+.+.|.+ ++++..|++..++. .|++++..+++|.|+.+.++.|.+++++.+
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~-----------~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~ 94 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGE-----------IQIPANKQKLSGKAGFLKDNMSLAHYNVGA 94 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHH-----------TTCCTTTSEEECSSSBCCTTSBTTTTTCSS
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHH-----------HCCCHHHeEEEECCEECCCCCcHHHCCCCC
Confidence 4699999987 78888999998 99999999999999 999999999999999999999999999999
Q ss_pred CCEEEEEeeecCCC
Q psy4523 89 GDTIEIYQQQTGGF 102 (126)
Q Consensus 89 GD~Idv~~~Q~GG~ 102 (126)
|++|.+.++..||.
T Consensus 95 g~~l~l~~r~~GGk 108 (111)
T 1we6_A 95 GEILTLSLRERSGP 108 (111)
T ss_dssp SCEEEEECSSCCSS
T ss_pred CCEEEEEEEcCCCC
Confidence 99999999999984
No 60
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.13 E-value=3.7e-10 Score=79.01 Aligned_cols=80 Identities=13% Similarity=0.253 Sum_probs=73.3
Q ss_pred CcEEEEEEecc----------CCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCcc
Q psy4523 13 EHINLKVLGQD----------NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPS 82 (126)
Q Consensus 13 ~~I~Ikv~~~~----------g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~ 82 (126)
..|+|.|+..+ |+.+.+.|.+++++..|++..++. .|++++..+++|.|+.|.++.|.+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrL~~~Gk~L~D~~tL~ 92 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEA-----------TGMPAGKQKLQYEGIFIKDSNSLA 92 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHH-----------SSCCTTTEEEEETTEEECTTSBHH
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHH-----------HCCChHHEEEEECCEECCCCCCHH
Confidence 47888888753 567889999999999999999999 999999999999999999999999
Q ss_pred ccCCCCCCEEEEEeeecCCCc
Q psy4523 83 TLEMEEGDTIEIYQQQTGGFK 103 (126)
Q Consensus 83 dL~MeDGD~Idv~~~Q~GG~~ 103 (126)
++++.+|++|++.++..||..
T Consensus 93 ~y~i~~g~~i~lv~rl~GGk~ 113 (115)
T 1we7_A 93 YYNMASGAVIHLALKERSGPS 113 (115)
T ss_dssp HHTCCSSCEEEEEECCCSCCS
T ss_pred HCCCCCCCEEEEEEEcCCCCC
Confidence 999999999999999999853
No 61
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.13 E-value=2.9e-10 Score=87.06 Aligned_cols=81 Identities=11% Similarity=0.239 Sum_probs=76.9
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id 93 (126)
.+.|.|+..+|..+.+.|.+++++..|++..++. .|++++.++|+|.|+.|.++.|.+++++++|++|+
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~-----------~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~ 173 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 173 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEE
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhc-----------cCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 3899999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred EEeeecCCCcCC
Q psy4523 94 IYQQQTGGFKQT 105 (126)
Q Consensus 94 v~~~Q~GG~~~~ 105 (126)
+.+++.||....
T Consensus 174 LvlrlrGG~~~f 185 (189)
T 3q3f_A 174 LVLRLRGGGQTF 185 (189)
T ss_dssp ECCCCCCCCCCC
T ss_pred EEEEcCCCCcce
Confidence 999999998743
No 62
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.12 E-value=5.5e-10 Score=82.29 Aligned_cols=84 Identities=12% Similarity=0.319 Sum_probs=75.9
Q ss_pred CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523 9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE 88 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD 88 (126)
......|.|.|+..+|+.+.+.|.+++++..|+...++. .|++++..+|+|+|+.|.++.|..++++.+
T Consensus 15 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-----------~gip~~~QrL~~~g~~L~d~~tL~~~~i~~ 83 (172)
T 3u30_A 15 VPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 83 (172)
T ss_dssp ----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTCBTGGGTCCT
T ss_pred CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCcChHHEEEEECCccccccCCHhHcCCcc
Confidence 445678999999988998999999999999999999999 999999999999999999999999999999
Q ss_pred CCEEEEEeeecCCCc
Q psy4523 89 GDTIEIYQQQTGGFK 103 (126)
Q Consensus 89 GD~Idv~~~Q~GG~~ 103 (126)
|++|.+.+...||..
T Consensus 84 ~~~l~l~~~~~gg~~ 98 (172)
T 3u30_A 84 ESTLHLVLRLRGGMQ 98 (172)
T ss_dssp TCEEEEEECCCCCEE
T ss_pred cceeeeeeccccccc
Confidence 999999999888743
No 63
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.10 E-value=3.3e-10 Score=78.41 Aligned_cols=77 Identities=12% Similarity=0.256 Sum_probs=68.4
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
|.|.|+..+|..+.+.|.+++++..|+...+++ .|++++.+||+|.|+.|.++.|..++++++|++|.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~l 70 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQS-----------ISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVF 70 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHT-----------TTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEE
Confidence 567888888999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeeecCCC
Q psy4523 95 YQQQTGGF 102 (126)
Q Consensus 95 ~~~Q~GG~ 102 (126)
++......
T Consensus 71 v~~~~~~~ 78 (106)
T 3m62_B 71 MVSQKKST 78 (106)
T ss_dssp ECCC----
T ss_pred EEcCCCCC
Confidence 98865533
No 64
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.10 E-value=4.5e-10 Score=78.41 Aligned_cols=77 Identities=10% Similarity=0.158 Sum_probs=71.4
Q ss_pred CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC
Q psy4523 9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE 88 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD 88 (126)
..+.+.|.|.|++..|+.+.+.|.+++++..|++..+++ .|++++.+||+|.|+.|.++.|.+++++.+
T Consensus 23 ~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k-----------~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~ 91 (100)
T 1uh6_A 23 EGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ-----------TGTRWNKIVLKKWYTIFKDHVSLGDYEIHD 91 (100)
T ss_dssp SSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHH-----------HCCCGGGCEEEETTEECCSSCBHHHHTCCT
T ss_pred CCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHH-----------hCCCHHHEEEEECCEECCCCCCHHHcCCCC
Confidence 344556999999988999999999999999999999999 999999999999999999999999999999
Q ss_pred CCEEEEEe
Q psy4523 89 GDTIEIYQ 96 (126)
Q Consensus 89 GD~Idv~~ 96 (126)
|++|+++.
T Consensus 92 gstlhL~~ 99 (100)
T 1uh6_A 92 GMNLELYY 99 (100)
T ss_dssp TEEEEEEC
T ss_pred CCEEEEEe
Confidence 99998864
No 65
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.69 E-value=8.4e-12 Score=80.16 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=68.4
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
.|.|++.+|..+.+.+.+++++..|++..++. .|++++.++|+|+|+.|.++.|.+++++++|++|++.
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~-----------~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQ-----------QGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIV 70 (76)
Confidence 56677777888889999999999999999999 9999999999999999999999999999999999999
Q ss_pred eeecC
Q psy4523 96 QQQTG 100 (126)
Q Consensus 96 ~~Q~G 100 (126)
++..|
T Consensus 71 ~rlrg 75 (76)
T 3b1l_X 71 QRPRR 75 (76)
Confidence 88765
No 66
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.10 E-value=1.4e-09 Score=70.99 Aligned_cols=77 Identities=4% Similarity=0.165 Sum_probs=68.7
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I 92 (126)
..|.|.|+..+|..+.+.|.+++++..|++..++++.. .|++++.+||+|+|+.|.++.|.+++++.+|++|
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~--------~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i 75 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGR--------DAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFV 75 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCT--------TTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEE
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccc--------cCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEE
Confidence 46889999888998999999999999999999986100 5789999999999999999999999999999999
Q ss_pred EEEee
Q psy4523 93 EIYQQ 97 (126)
Q Consensus 93 dv~~~ 97 (126)
.+...
T Consensus 76 ~l~~~ 80 (85)
T 2wyq_A 76 VVMVT 80 (85)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99875
No 67
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.08 E-value=9.1e-10 Score=75.49 Aligned_cols=83 Identities=8% Similarity=0.179 Sum_probs=72.5
Q ss_pred CCcEEEEEEeccC----CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCC-CCccccCC
Q psy4523 12 DEHINLKVLGQDN----NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQ-DTPSTLEM 86 (126)
Q Consensus 12 ~~~I~Ikv~~~~g----~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~-~TP~dL~M 86 (126)
...+.|.|+...+ +.+.+.|.+++++..|++..++. .|++++.++++|.|+.|.++ .|.+++++
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~-----------~gip~~~qrL~~~gk~L~D~~~tL~~ygI 73 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELE-----------SGVPAEEAQIVYMEQLLTDDHCSLGSYGL 73 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHH-----------TCCCGGGBCEEETTEEECCSSSBHHHHTC
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHH-----------HCcChHHeEEEECCEECCCCcccHHHCCC
Confidence 3457777776543 57779999999999999999999 99999999999999999887 69999999
Q ss_pred CCCCEEEEEeeecCCCcCC
Q psy4523 87 EEGDTIEIYQQQTGGFKQT 105 (126)
Q Consensus 87 eDGD~Idv~~~Q~GG~~~~ 105 (126)
++|++|.+.....||....
T Consensus 74 ~~g~~l~l~~~~~gg~~~~ 92 (102)
T 1v5o_A 74 KDGDMVVLLQKDNVGLRTP 92 (102)
T ss_dssp CTTEEEEECBCCCCCCSSC
T ss_pred CCCCEEEEEECCCCCCCCC
Confidence 9999999999998886544
No 68
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.06 E-value=1.4e-09 Score=77.20 Aligned_cols=77 Identities=12% Similarity=0.320 Sum_probs=71.5
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
+.|.|+..+|..+.+.|.+++++..|++..++. .|++++..+|+|.|+.|.++.|.+++++.+|++|++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~-----------~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l 69 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 69 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHH-----------HCcChHHeEEEECCeECcCcccHHHhccCCCCeeEE
Confidence 357787778888999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeeecCCC
Q psy4523 95 YQQQTGGF 102 (126)
Q Consensus 95 ~~~Q~GG~ 102 (126)
...+.||.
T Consensus 70 ~~~~~~~~ 77 (152)
T 3b08_A 70 VLRLRGGM 77 (152)
T ss_dssp EECCTTCE
T ss_pred Eeeccccc
Confidence 99988774
No 69
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.5e-09 Score=78.03 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=72.2
Q ss_pred CCCcEEEEEE-eccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523 11 TDEHINLKVL-GQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG 89 (126)
Q Consensus 11 ~~~~I~Ikv~-~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG 89 (126)
+...|+|+|+ ...+..+.+.+..+.+++.|++.+++. .+++.+.+||+|+|+.|.+++|..++++++|
T Consensus 12 ~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~-----------~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g 80 (118)
T 2daf_A 12 EDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHL-----------LGIPHSVLQIRYSGKILKNNETLVQHGVKPQ 80 (118)
T ss_dssp CSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHH-----------HTCCTTTEEEEETTEEECSSCCHHHHSCCSS
T ss_pred cCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhh-----------hCCChHHEEEEECCeEcCCcchHHHcCCCCC
Confidence 4456999987 666888999999999999999999999 8999999999999999999999999999999
Q ss_pred CEEEEEeeecC
Q psy4523 90 DTIEIYQQQTG 100 (126)
Q Consensus 90 D~Idv~~~Q~G 100 (126)
.+|++.+...-
T Consensus 81 ~TIhLvi~s~~ 91 (118)
T 2daf_A 81 EIVQVEIFSTN 91 (118)
T ss_dssp CEEEEEEEESC
T ss_pred CEEEEEEecCC
Confidence 99999987644
No 70
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.06 E-value=1.6e-11 Score=87.57 Aligned_cols=78 Identities=12% Similarity=0.310 Sum_probs=1.0
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
+.|.|+..+|..+.+.|.+++++..|+...++. .|++++.++|+|+|+.|.++.|.+++++++|++|++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l 69 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 69 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH-----------hCcChHHEEEEECCEECCCCCchhhhccCCCCEEEE
Confidence 356777778888899999999999999999999 999999999999999999999999999999999999
Q ss_pred EeeecCCCc
Q psy4523 95 YQQQTGGFK 103 (126)
Q Consensus 95 ~~~Q~GG~~ 103 (126)
++++.||..
T Consensus 70 ~~rl~GG~~ 78 (128)
T 3u5e_m 70 VLRLRGGII 78 (128)
T ss_dssp -------CC
T ss_pred EEEcCCCCC
Confidence 999999864
No 71
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.05 E-value=1.4e-09 Score=75.20 Aligned_cols=79 Identities=11% Similarity=0.227 Sum_probs=67.8
Q ss_pred CCCCCcEEEEEEeccCCEEEE--EecCCCcHHHHHHHH-HHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccC
Q psy4523 9 KSTDEHINLKVLGQDNNVVQF--KIKKGTPLRKLMNAY-CERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLE 85 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g~~v~f--kIk~tt~l~kL~~~y-~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~ 85 (126)
++....|.|.|++..|..+.+ .+.++++...|++.. ++. .|++++..||+|.|+.|.++.|.++++
T Consensus 14 ~~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~dy~ 82 (98)
T 4a20_A 14 KMDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEE-----------KASHISEIKLLLKGKVLHDNLFLSDLK 82 (98)
T ss_dssp ----CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTT-----------SCSCGGGEEEEETTEEECTTCBGGGSC
T ss_pred cCCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHh-----------cCCChhhEEEEECCEECcCcCCHHHcC
Confidence 345677999999988886655 556999999999998 677 899999999999999999999999999
Q ss_pred C-CCCCEEEEEeee
Q psy4523 86 M-EEGDTIEIYQQQ 98 (126)
Q Consensus 86 M-eDGD~Idv~~~Q 98 (126)
+ ++|++|.+++.+
T Consensus 83 I~~~g~ti~lmvsk 96 (98)
T 4a20_A 83 VTPANSTITVMIKP 96 (98)
T ss_dssp CBTTBCEEEEEECC
T ss_pred cCCCCCEEEEEEeC
Confidence 9 999999999864
No 72
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.05 E-value=1.3e-09 Score=72.59 Aligned_cols=74 Identities=14% Similarity=0.188 Sum_probs=69.8
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCee-cCCCCCccccCCCCCCE
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQA-INEQDTPSTLEMEEGDT 91 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~r-L~~~~TP~dL~MeDGD~ 91 (126)
..++|.|+...|+.+.+.|.+++++..|++..++. .|++++..|++|.|+. |.++.|.+++++++|++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~ 77 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERS-----------QHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSD 77 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHH-----------HTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHH-----------HCcChHHEEEEECCEEecCCcCCHHHcCCCCCCE
Confidence 46889999889999999999999999999999999 9999999999999999 99999999999999999
Q ss_pred EEEEee
Q psy4523 92 IEIYQQ 97 (126)
Q Consensus 92 Idv~~~ 97 (126)
|.+.++
T Consensus 78 i~lv~~ 83 (84)
T 2kk8_A 78 IQLEVS 83 (84)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 998764
No 73
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.03 E-value=9.5e-10 Score=77.15 Aligned_cols=84 Identities=12% Similarity=0.172 Sum_probs=73.9
Q ss_pred CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc---------------ceeEEEECCee
Q psy4523 10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM---------------STVRFRFDGQA 74 (126)
Q Consensus 10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~---------------~~~rF~fdG~r 74 (126)
+.+..++|.|+..+|..+.+.|.++.++..|+++..++ .|+++ ++++|+|.|+.
T Consensus 3 ~~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~-----------~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~ 71 (105)
T 1v2y_A 3 SGSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRY-----------VQLKQEREGGVQHISWSYVWRTYHLTSAGEK 71 (105)
T ss_dssp CCCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHH-----------HHHHHHHTTCCCCCCHHHHHTTEEEESSSCE
T ss_pred CCCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHH-----------hCCCcccccCcceeeeeecceeEEEEeCCcC
Confidence 34567999999999999999999999999999999999 65544 57899999999
Q ss_pred cC-CCCCccccCCCCCCEEEEEeeecCCCcC
Q psy4523 75 IN-EQDTPSTLEMEEGDTIEIYQQQTGGFKQ 104 (126)
Q Consensus 75 L~-~~~TP~dL~MeDGD~Idv~~~Q~GG~~~ 104 (126)
|. ++.|..++++++|++|.++.+..|-+..
T Consensus 72 L~dD~~tL~dygI~~g~~l~lv~~lr~~~~~ 102 (105)
T 1v2y_A 72 LTEDRKKLRDYGIRNRDEVSFIKKLGQKSGP 102 (105)
T ss_dssp ECCSSSBHHHHTCCSSEEEEEEECSCSCCCC
T ss_pred ccCCcCCHHHcCCCCCCEEEEEehhccCCCC
Confidence 97 5699999999999999999998887553
No 74
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.01 E-value=1.7e-09 Score=79.67 Aligned_cols=77 Identities=12% Similarity=0.307 Sum_probs=67.9
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id 93 (126)
.+.|.|+..+|+.+.+.|.+++++..|++..+++ .|++++..+++|+|+.|.++.|..++++++|++|+
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-----------~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~ 164 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 164 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEE
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHH-----------hCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEE
Confidence 4667777778899999999999999999999999 99999999999999999999999999999999999
Q ss_pred EEeeecCC
Q psy4523 94 IYQQQTGG 101 (126)
Q Consensus 94 v~~~Q~GG 101 (126)
+.++..||
T Consensus 165 l~~rlrgG 172 (172)
T 3u30_A 165 LVLRLRGG 172 (172)
T ss_dssp ECC-----
T ss_pred EEEecCCC
Confidence 99999987
No 75
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.00 E-value=3.6e-11 Score=89.09 Aligned_cols=79 Identities=13% Similarity=0.308 Sum_probs=0.0
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
|.|.|+..+|..+.+.|.+++++..|+...++. .|++++.++|+|+|+.|.++.|.+++++++|++|++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~L 69 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 69 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHH-----------hCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEE
Confidence 356777777888899999999999999999999 999999999999999999999999999999999999
Q ss_pred EeeecCCCcC
Q psy4523 95 YQQQTGGFKQ 104 (126)
Q Consensus 95 ~~~Q~GG~~~ 104 (126)
.+++.||..-
T Consensus 70 vlrl~GGgKk 79 (152)
T 3u5c_f 70 VLRLRGGGKK 79 (152)
T ss_dssp ----------
T ss_pred EeeccCCCcC
Confidence 9999999753
No 76
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.96 E-value=6e-10 Score=76.69 Aligned_cols=75 Identities=8% Similarity=0.319 Sum_probs=66.5
Q ss_pred CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD 90 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD 90 (126)
++-.|+|+|++ .|+.+.+.|.+++++..|++..+++ .|++++..|++|+|+.|.++.|.+++++++|+
T Consensus 25 ~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~ 92 (101)
T 3m63_B 25 GAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKA-----------NGIPVANQRLIYSGKILKDDQTVESYHIQDGH 92 (101)
T ss_dssp ----CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHH-----------HSCCSTTCCEEETTEECCTTSBTTTTTCCTTE
T ss_pred CCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHH-----------HCcChHHEEEEECCEECCCcCcHHHCCCCCCC
Confidence 34467888887 7888889999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEee
Q psy4523 91 TIEIYQQ 97 (126)
Q Consensus 91 ~Idv~~~ 97 (126)
+|.+...
T Consensus 93 tI~lv~~ 99 (101)
T 3m63_B 93 SVHLVKS 99 (101)
T ss_dssp EEEECCC
T ss_pred EEEEEeC
Confidence 9998764
No 77
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=98.87 E-value=1.4e-08 Score=73.06 Aligned_cols=91 Identities=12% Similarity=0.158 Sum_probs=74.1
Q ss_pred CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC--ccceeEEEECCeecCCCCCccccCC
Q psy4523 9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL--SMSTVRFRFDGQAINEQDTPSTLEM 86 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl--~~~~~rF~fdG~rL~~~~TP~dL~M 86 (126)
......|.|+|+...|..+.|.|.+++++..|++..++.|... ...|+ +++.+||+|.|+.|.++.|.+++++
T Consensus 12 ~~~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~d-----wke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I 86 (125)
T 2gow_A 12 NVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMD-----WEEEQVSSPNILRLIYQGRFLHGNVTLGALKL 86 (125)
T ss_dssp SCCTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCS-----CCCCTTCCGGGEEEESSSSEEESSCBTGGGCC
T ss_pred CCCCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcc-----cccCCCCChHHEEEEECCcCCCCCCcHHHcCC
Confidence 3455679999999889989999999999999999999842100 00566 4889999999999999999999999
Q ss_pred CCCC--EEEEEeeecCCCcC
Q psy4523 87 EEGD--TIEIYQQQTGGFKQ 104 (126)
Q Consensus 87 eDGD--~Idv~~~Q~GG~~~ 104 (126)
.+|+ +|++.++..++.+.
T Consensus 87 ~~~~~~tlhlv~r~~~~~~~ 106 (125)
T 2gow_A 87 PFGKTTVMHLVARETLPEPN 106 (125)
T ss_dssp CTTSEEEEEEEECSCCSSSS
T ss_pred CCCCceEEEEEecCCCCccc
Confidence 9998 57777887776554
No 78
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.87 E-value=7.7e-09 Score=72.09 Aligned_cols=74 Identities=8% Similarity=0.065 Sum_probs=64.9
Q ss_pred EEEEEecc----CCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523 16 NLKVLGQD----NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT 91 (126)
Q Consensus 16 ~Ikv~~~~----g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~ 91 (126)
+|.|+..+ ++.+.+.|.++++...|++..+++ .|++++.++++|.|+.|.++.|.+++++.+|.+
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k-----------~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gst 85 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAET-----------FGLQENYIKIVINKKQLQLGKTLEEQGVAHNVK 85 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHH-----------TTCCSTTCEEEETTEECCTTSBHHHHTCCSSEE
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHH-----------HCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCE
Confidence 44444455 567899999999999999999999 999999999999999999999999999999999
Q ss_pred EEEEeeecCC
Q psy4523 92 IEIYQQQTGG 101 (126)
Q Consensus 92 Idv~~~Q~GG 101 (126)
| +.+...|.
T Consensus 86 i-~vl~lrg~ 94 (100)
T 1wju_A 86 A-MVLELKQS 94 (100)
T ss_dssp E-EEECCCCC
T ss_pred E-EEEEECCC
Confidence 9 66665554
No 79
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.86 E-value=1e-08 Score=70.87 Aligned_cols=75 Identities=12% Similarity=0.231 Sum_probs=65.3
Q ss_pred CcEEEEEEeccC---CEEEEEec--------C-CCcHHHHHHHHHHHhhhhhhhhhhhc--cCccce-eEEEECCeecCC
Q psy4523 13 EHINLKVLGQDN---NVVQFKIK--------K-GTPLRKLMNAYCERCVSILSVLITLQ--NLSMST-VRFRFDGQAINE 77 (126)
Q Consensus 13 ~~I~Ikv~~~~g---~~v~fkIk--------~-tt~l~kL~~~y~~~~~~~~~~~~~~~--gl~~~~-~rF~fdG~rL~~ 77 (126)
..|.|.|+..++ ....+.|. + ++++..|++..+++ . |++++. .||+|.|+.|.+
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~-----------~~~gip~~~~qrLi~~Gk~L~D 79 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGK-----------LQESVPDPELIDLIYCGRKLKD 79 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHH-----------CTTTCCCSSSEEEEETTEECCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHH-----------hccCCChhhcEEEEECCeECCC
Confidence 457777877767 66778844 4 49999999999999 8 999999 999999999999
Q ss_pred CCCccccCCCCCCEEEEEeee
Q psy4523 78 QDTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.|..++++++|++|+++...
T Consensus 80 ~~tL~~y~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 80 DQTLDFYGIQPGSTVHVLRKS 100 (107)
T ss_dssp TCBHHHHTCCTTCEEEEEESS
T ss_pred CCcHHHcCCCCCCEEEEEeCC
Confidence 999999999999999998764
No 80
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=98.83 E-value=7.2e-09 Score=70.06 Aligned_cols=73 Identities=11% Similarity=0.221 Sum_probs=66.0
Q ss_pred EEEEEEeccCCEEEEEec--CCCcHHHHHHHH-HHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCC-CCCC
Q psy4523 15 INLKVLGQDNNVVQFKIK--KGTPLRKLMNAY-CERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEM-EEGD 90 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk--~tt~l~kL~~~y-~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~M-eDGD 90 (126)
|.|.|++..|..+.+.|. ++++...|++.. ++. .|++++..|++|.|+.|.++.|.+++++ .+|.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~-----------~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~s 70 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEE-----------KASHISEIKLLLKGKVLHDNLFLSDLKVTPANS 70 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTT-----------SCSSSTTEEEEETTEECCTTCBHHHHCCCGGGC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHh-----------cCCChHHEEEEECCEECcCcCCHHHcCCCCCCC
Confidence 578888888887777755 999999999999 888 9999999999999999999999999999 7999
Q ss_pred EEEEEeee
Q psy4523 91 TIEIYQQQ 98 (126)
Q Consensus 91 ~Idv~~~Q 98 (126)
+|.|....
T Consensus 71 tl~v~~~~ 78 (87)
T 2lxa_A 71 TITVMIKP 78 (87)
T ss_dssp EEEEEECC
T ss_pred EEEEEcCC
Confidence 99998763
No 81
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.82 E-value=2.9e-08 Score=65.96 Aligned_cols=65 Identities=11% Similarity=0.211 Sum_probs=60.6
Q ss_pred ccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEee
Q psy4523 22 QDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 22 ~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~ 97 (126)
..|..+.+.+.+++++..|++..++. .|++++.++++|+|+.|.++.|..++++.+|++|.+...
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~-----------~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPI-----------TNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHH-----------HCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHH-----------HCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 36778889999999999999999999 999999999999999999999999999999999988754
No 82
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.79 E-value=4.4e-08 Score=65.31 Aligned_cols=74 Identities=15% Similarity=0.271 Sum_probs=66.2
Q ss_pred CCcEEEEEEeccCCEEEEEecCC-----CcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCC-CCCccccC
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKG-----TPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINE-QDTPSTLE 85 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~t-----t~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~-~~TP~dL~ 85 (126)
...|+|.|+. .|....+.|.++ .++..|++..++. .|++++.+|++|.|+.|.+ +.|..+++
T Consensus 5 ~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~-----------~gip~~~qrL~~~Gk~L~D~~~~L~~~~ 72 (92)
T 1wxv_A 5 SSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEV-----------IGVPQSFQKLIFKGKSLKEMETPLSALG 72 (92)
T ss_dssp CSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHH-----------TCCCTTTCEEEETTEEECCSSSBHHHHT
T ss_pred CCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHH-----------HCcCHHHEEEEECCeecCCCcccHHHCC
Confidence 4579999987 477788999995 9999999999999 9999999999999999998 45899999
Q ss_pred CCCCCEEEEEee
Q psy4523 86 MEEGDTIEIYQQ 97 (126)
Q Consensus 86 MeDGD~Idv~~~ 97 (126)
+++|++|.+...
T Consensus 73 i~~g~~i~l~~~ 84 (92)
T 1wxv_A 73 IQDGCRVMLIGK 84 (92)
T ss_dssp CCSSEEEEEESC
T ss_pred CCCCCEEEEEec
Confidence 999999998764
No 83
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.78 E-value=5.7e-08 Score=70.22 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=70.1
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEE-E-CCeecCCCCCccccCCCCCCEE
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFR-F-DGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~-f-dG~rL~~~~TP~dL~MeDGD~I 92 (126)
+.|.|+..+|..+.+.|.+++++..|++..++. .|++++..+|+ | .|+.|.++.|.+++++.+|++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~-----------~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l 71 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQK-----------IGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTV 71 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHH-----------HCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHH-----------hCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEE
Confidence 677888788999999999999999999999999 99999999999 9 7999999999999999999999
Q ss_pred EEEeee-cCC
Q psy4523 93 EIYQQQ-TGG 101 (126)
Q Consensus 93 dv~~~Q-~GG 101 (126)
.+.+.+ .++
T Consensus 72 ~l~~~~~~~~ 81 (159)
T 3rt3_B 72 LLVVDKSDEP 81 (159)
T ss_dssp EEEECCCCCC
T ss_pred EEEccCCCCc
Confidence 999884 444
No 84
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.76 E-value=1.4e-07 Score=67.01 Aligned_cols=83 Identities=13% Similarity=0.157 Sum_probs=66.8
Q ss_pred CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC--ccceeEEEECCeecCCCCCccccCCC
Q psy4523 10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL--SMSTVRFRFDGQAINEQDTPSTLEME 87 (126)
Q Consensus 10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl--~~~~~rF~fdG~rL~~~~TP~dL~Me 87 (126)
...+.|.|+|+...|..+.|.|.+++++..|++..++.|... ...|+ +++.+||+|.|+.|.++.|.+++++.
T Consensus 12 ~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~d-----wke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~ 86 (116)
T 1wgh_A 12 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMD-----WEEEQVSSPNILRLIYQGRFLHGNVTLGALKLP 86 (116)
T ss_dssp CCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCC-----SSCCCCCCTTTEEEEETTEEECSSCBTTTTTCC
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccc-----cccCCCCChHHEEEEECCcCCCCCCcHHHcCCC
Confidence 345679999999889999999999999999999999942100 00454 58999999999999999999999999
Q ss_pred CCCEEEEEee
Q psy4523 88 EGDTIEIYQQ 97 (126)
Q Consensus 88 DGD~Idv~~~ 97 (126)
.|+.+-+++.
T Consensus 87 ~~~~~tlhLv 96 (116)
T 1wgh_A 87 FGKTTVMHLV 96 (116)
T ss_dssp SSCEEEEEEE
T ss_pred CCCceEEEEE
Confidence 8876444433
No 85
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.75 E-value=4e-08 Score=66.89 Aligned_cols=74 Identities=8% Similarity=0.135 Sum_probs=66.4
Q ss_pred CCCcEEEEEEeccCCEE-EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523 11 TDEHINLKVLGQDNNVV-QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG 89 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v-~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG 89 (126)
....|+|+|+. .|..+ .+.|..++++..|+...++. .|++++..|++|.|+.|.++ |.+++++.+|
T Consensus 4 ~~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~-----------tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g 70 (96)
T 1wgg_A 4 GSSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFAL-----------TGVQPARQKVMVKGGTLKDD-DWGNIKMKNG 70 (96)
T ss_dssp CCCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHH-----------TCCCTTTSCCEETTEECCSS-CCCSCCCCSS
T ss_pred CCcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHeEEEECCcCCCCC-CHHHCCCCCC
Confidence 34578999985 47777 59999999999999999999 99999999999999999988 9999999999
Q ss_pred CEEEEEee
Q psy4523 90 DTIEIYQQ 97 (126)
Q Consensus 90 D~Idv~~~ 97 (126)
++|.++..
T Consensus 71 ~~i~l~~~ 78 (96)
T 1wgg_A 71 MTVLMMGS 78 (96)
T ss_dssp CEEECCCC
T ss_pred CEEEEEec
Confidence 99988654
No 86
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=98.75 E-value=2.6e-08 Score=66.77 Aligned_cols=75 Identities=7% Similarity=0.069 Sum_probs=66.4
Q ss_pred CCCcEEEEEEeccCCEEEE-EecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEE---ECCeecCCCCCccccCC
Q psy4523 11 TDEHINLKVLGQDNNVVQF-KIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFR---FDGQAINEQDTPSTLEM 86 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~f-kIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~---fdG~rL~~~~TP~dL~M 86 (126)
....|+|+|+. .|+.+.+ .|.+++++..|++..++. .|++++..|++ |.|+.|.++.|.+++++
T Consensus 4 ~~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~-----------~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i 71 (90)
T 1v5t_A 4 GSSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTL-----------TGVLPERQKLLGLKVKGKPAENDVKLGALKL 71 (90)
T ss_dssp CCCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHH-----------TCCCTTTCEEESCEETTEECCTTSBHHHHTC
T ss_pred CCceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHH-----------HCcCHHHeEEEeeccCCcCcCCCCCHHHcCC
Confidence 34567788875 5777778 899999999999999999 99999999999 99999999999999999
Q ss_pred CCCCEEEEEee
Q psy4523 87 EEGDTIEIYQQ 97 (126)
Q Consensus 87 eDGD~Idv~~~ 97 (126)
.+|++|.++..
T Consensus 72 ~~g~~l~l~~~ 82 (90)
T 1v5t_A 72 KPNTKIMMMGT 82 (90)
T ss_dssp CTTEEEEEECC
T ss_pred CCCCEEEEEec
Confidence 99999988643
No 87
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.74 E-value=7.4e-08 Score=69.66 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=73.3
Q ss_pred CCcEEEEEEeccCCEE-EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc--ceeEEEECCeecCCCCCccccCCCC
Q psy4523 12 DEHINLKVLGQDNNVV-QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM--STVRFRFDGQAINEQDTPSTLEMEE 88 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v-~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~--~~~rF~fdG~rL~~~~TP~dL~MeD 88 (126)
.+.+.|+|+..+|..+ .+.+.++++...|++..++.|. +...|+++ +.+||+|.|+.|.++.|.+++++.+
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p------~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~ 87 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWP------REKENGPKTVKEVKLISAGKVLENSKTVKDYRSPV 87 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSC------TTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCT
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcc------cccccCCCChhhEEEEECCeECcCCCcHHHcCCCc
Confidence 3689999999999888 6999999999999999976631 01257765 7999999999999999999999999
Q ss_pred CC------EEEEEeeecCCCcC
Q psy4523 89 GD------TIEIYQQQTGGFKQ 104 (126)
Q Consensus 89 GD------~Idv~~~Q~GG~~~ 104 (126)
|+ ++.+.++..||..-
T Consensus 88 ~~~~~~v~tmhlVlrl~g~~kk 109 (126)
T 1se9_A 88 SNLAGAVTTMHVIIQAPVTEKE 109 (126)
T ss_dssp TSCTTCCEEEEEEECCCSSCCC
T ss_pred CCccCCcEEEEEEeccCCcccc
Confidence 95 68888888887653
No 88
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=98.71 E-value=1.5e-07 Score=66.08 Aligned_cols=74 Identities=9% Similarity=0.135 Sum_probs=64.9
Q ss_pred CcEEEEEEeccC--CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCC-CCC
Q psy4523 13 EHINLKVLGQDN--NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEM-EEG 89 (126)
Q Consensus 13 ~~I~Ikv~~~~g--~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~M-eDG 89 (126)
=.+.|.|.+..+ ..+.+.|.+++++..|++...++ .|++++..|++|.|+.+.++.|.+++++ ++|
T Consensus 23 i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k-----------~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G 91 (105)
T 4dbg_A 23 IRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLD-----------YGFPPVLQQWVIGQRLARDQETLHSHGVRQNG 91 (105)
T ss_dssp EEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEEECTTCBTGGGTCCSTT
T ss_pred EEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHH-----------hCCCHHHEEEeccCeEccCcCcHHHcCCCCCC
Confidence 345556666554 57889999999999999999999 9999999999999998899999999999 699
Q ss_pred CEEEEEee
Q psy4523 90 DTIEIYQQ 97 (126)
Q Consensus 90 D~Idv~~~ 97 (126)
++|..++-
T Consensus 92 ~t~hL~l~ 99 (105)
T 4dbg_A 92 DSAYLYLL 99 (105)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEE
Confidence 99999875
No 89
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=98.70 E-value=1.6e-07 Score=64.27 Aligned_cols=77 Identities=13% Similarity=0.184 Sum_probs=67.3
Q ss_pred CCCCCCcEEEEEEeccCC--EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--Ce---ec-CCCC
Q psy4523 8 SKSTDEHINLKVLGQDNN--VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQ---AI-NEQD 79 (126)
Q Consensus 8 ~~~~~~~I~Ikv~~~~g~--~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~---rL-~~~~ 79 (126)
|..++..|+|.|.+..+. .+.++|.++.++..|+....++ .|+++++.|++|. |+ .| .++.
T Consensus 9 ~~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~-----------~GiP~~~QrL~~~~~g~~~~~L~~D~~ 77 (95)
T 2kjr_A 9 SHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEIL-----------TGGCAGTMKVQVFKGDTCVSTMDNNDA 77 (95)
T ss_dssp CCCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHH-----------HCSCTTTEEEEEEETTEEEEECCCTTS
T ss_pred ccCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHH-----------HCcCHHHeEEEEecCCcccceeCCCCC
Confidence 345678999999986553 6789999999999999999999 9999999999997 55 44 7889
Q ss_pred CccccCCCCCCEEEEE
Q psy4523 80 TPSTLEMEEGDTIEIY 95 (126)
Q Consensus 80 TP~dL~MeDGD~Idv~ 95 (126)
|..++++++|++|.+.
T Consensus 78 tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 78 QLGYYANSDGLRLHVV 93 (95)
T ss_dssp BHHHHCCSSSCEEEEE
T ss_pred CHhHCCcCCCCEEEEE
Confidence 9999999999999875
No 90
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=98.67 E-value=1.2e-07 Score=67.77 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=65.5
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCC-------
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEME------- 87 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~Me------- 87 (126)
|.|+++.. ...+++.|.+++++..|+...+++ .|++++..||+|+|+.|.++.|..++++.
T Consensus 3 mfl~ir~~-ktti~lev~~sdTV~~lK~kI~~~-----------egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q 70 (118)
T 2fnj_B 3 VFLMIRRH-KTTIFTDAKESSTVFELKRIVEGI-----------LKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQ 70 (118)
T ss_dssp EEEEEEEB-TEEEEEEEETTSBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTT
T ss_pred EEEEEecC-CEEEEEEeCCcChHHHHHHHHHHH-----------hCCCHHHeEEEECCeECCCCCCHHHcCcccccccCC
Confidence 56777653 234789999999999999999999 99999999999999999999999999999
Q ss_pred CCCEEEEEeeecCC
Q psy4523 88 EGDTIEIYQQQTGG 101 (126)
Q Consensus 88 DGD~Idv~~~Q~GG 101 (126)
++.+|++.++ .||
T Consensus 71 ~~stL~L~lr-~~g 83 (118)
T 2fnj_B 71 APATVGLAFR-ADD 83 (118)
T ss_dssp BCEEEEEEEB-SSS
T ss_pred CCCEEEEEec-CCC
Confidence 7999999998 444
No 91
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.64 E-value=5.5e-08 Score=65.91 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=66.2
Q ss_pred CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523 10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG 89 (126)
Q Consensus 10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG 89 (126)
.....|+|+|+. .+..+.+.|.+++++..|++..++. .|++++.+|++|.|+.| ++.|..++++++|
T Consensus 13 ~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~-----------tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g 79 (95)
T 1v86_A 13 VGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSI-----------TGLPPAMQKVMYKGLVP-EDKTLREIKVTSG 79 (95)
T ss_dssp CCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHH-----------HCSCSTTCCCBSSSBCC-SSSBHHHHCCCTT
T ss_pred CCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHeEEEECCeeC-CcCcHHHCCCCCC
Confidence 345678899885 5777789999999999999999999 99999999999999999 5569999999999
Q ss_pred CEEEEEee
Q psy4523 90 DTIEIYQQ 97 (126)
Q Consensus 90 D~Idv~~~ 97 (126)
++|.++..
T Consensus 80 ~~i~lv~~ 87 (95)
T 1v86_A 80 AKIMVVGS 87 (95)
T ss_dssp EEEEECCS
T ss_pred CEEEEEec
Confidence 99988754
No 92
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=98.62 E-value=8.6e-08 Score=66.10 Aligned_cols=74 Identities=8% Similarity=0.124 Sum_probs=62.8
Q ss_pred CCCcEEEEEEeccCC--EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCc-cceeEEEECCeecCCCCCcccc--C
Q psy4523 11 TDEHINLKVLGQDNN--VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS-MSTVRFRFDGQAINEQDTPSTL--E 85 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~--~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~-~~~~rF~fdG~rL~~~~TP~dL--~ 85 (126)
....|.|+|+..++. .+.+.+.+++++..|++..++++ .|.+ ++..|++|.|+.|.++.|.+++ +
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~----------~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~ 89 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVY----------PSKPLTKDQRLVYSGRLLPDHLQLKDILRK 89 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHS----------TTCCCTTTCCEEETTEEECTTSBTHHHHTT
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHh----------cCCCChhhEEEEECCEECCCCCCHHHHhcC
Confidence 345699999987776 57888999999999999999861 4555 4999999999999999999999 9
Q ss_pred CCCCCEEEE
Q psy4523 86 MEEGDTIEI 94 (126)
Q Consensus 86 MeDGD~Idv 94 (126)
+++|++|.+
T Consensus 90 I~~~~tihL 98 (99)
T 2kdb_A 90 QDEYHMVHL 98 (99)
T ss_dssp TCSEEEEEE
T ss_pred CCCCCEEEe
Confidence 999999876
No 93
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.61 E-value=2.1e-07 Score=75.85 Aligned_cols=77 Identities=9% Similarity=0.250 Sum_probs=70.4
Q ss_pred CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD 90 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD 90 (126)
....|.|.|+..+|+.+.+.|.+++++..|++..+++ .|++++.+|++|.|+.|.++.|.+++++++|+
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~-----------~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gs 298 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 298 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHH-----------HCCCGGGCEEEETTEECCTTSBTGGGTCCTTC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHH-----------HCcChHHEEEEeCCeecCCCCCHHHcCCCCCC
Confidence 3467889999888998999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEeee
Q psy4523 91 TIEIYQQQ 98 (126)
Q Consensus 91 ~Idv~~~Q 98 (126)
+|.+.+++
T Consensus 299 tL~LvlRL 306 (307)
T 3ai5_A 299 TLHLVLRL 306 (307)
T ss_dssp EEEEEC--
T ss_pred EEEEEEeC
Confidence 99998764
No 94
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.55 E-value=1.2e-07 Score=65.62 Aligned_cols=75 Identities=11% Similarity=0.161 Sum_probs=66.2
Q ss_pred CCCcEEEEEEeccCCEEEEEec-CCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCe-----------e----
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIK-KGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ-----------A---- 74 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk-~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~-----------r---- 74 (126)
....|.|+|++.+|.. .+.|. +++++..|++..+++ .|++++..++.|+|. .
T Consensus 4 ~~~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~-----------~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~ 71 (107)
T 1wf9_A 4 GSSGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQ-----------LQIPIHNQTLSTNRNLLLAKSPSDFLAFTDM 71 (107)
T ss_dssp SCCCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHH-----------SCCCTTTCCCBSSGGGGTCCSHHHHTTCCSS
T ss_pred CCCeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHH-----------hCcCcccCEEEECCccccccCcccccccccc
Confidence 3445889999998865 68899 999999999999999 999999999999988 4
Q ss_pred cCCCCCccccCCCCCCEEEEEee
Q psy4523 75 INEQDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 75 L~~~~TP~dL~MeDGD~Idv~~~ 97 (126)
+.++.|..++++.+||+|.+...
T Consensus 72 l~d~~tL~~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 72 ADPNLRISSLNLAHGSMVYLAYE 94 (107)
T ss_dssp CCTTCBGGGTCCCTTCEEECCCS
T ss_pred CCCCCCHHHCCCCCCCEEEEEeC
Confidence 47889999999999999988766
No 95
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.55 E-value=4.1e-07 Score=61.34 Aligned_cols=75 Identities=8% Similarity=0.081 Sum_probs=64.7
Q ss_pred CCCcEEEEEEeccCC-EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC---ee----cCCCCCcc
Q psy4523 11 TDEHINLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG---QA----INEQDTPS 82 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~-~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG---~r----L~~~~TP~ 82 (126)
+...|+|.|.+.... ...+++.+++++..|+...+++ .|++++..|++|.| +. +.++.|..
T Consensus 4 ~~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~-----------~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~ 72 (95)
T 1v6e_A 4 GSSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELV-----------VGSPASCMELELYGADDKFYSKLDQEDALLG 72 (95)
T ss_dssp CCCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHH-----------TCSCTTTCBCEEECSSSCEEEECCCSSSBTT
T ss_pred CCcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHH-----------HCCCHHHeEEEEeCCCCccccccCCCcCCHh
Confidence 345699999886442 5789999999999999999999 99999999999976 43 47889999
Q ss_pred ccCCCCCCEEEEEe
Q psy4523 83 TLEMEEGDTIEIYQ 96 (126)
Q Consensus 83 dL~MeDGD~Idv~~ 96 (126)
++++++|++|+|..
T Consensus 73 ~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 73 SYPVDDGCRIHVID 86 (95)
T ss_dssp SSSCCTTCEEEEBC
T ss_pred HCCCCCCCEEEEEE
Confidence 99999999998875
No 96
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.52 E-value=1.9e-07 Score=77.59 Aligned_cols=83 Identities=5% Similarity=0.189 Sum_probs=69.5
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT 91 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~ 91 (126)
+..|.|.|+...|+.+.+.|..++++..|++..++.+.. .|++++..||+|.|+.|.++.|..++++++|++
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~--------~gip~~~QrLiy~GK~L~D~~tL~dygI~~gst 76 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGR--------DAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 76 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCS--------SSCCSTEEEEESSSSEECSSSBTTTTCCCTTSC
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCc--------CCCChhheEEEECCeecCCcCCHHHcCCCCCCE
Confidence 345788888888888899999999999999999994100 679999999999999999999999999999999
Q ss_pred E-EEEeeecCCC
Q psy4523 92 I-EIYQQQTGGF 102 (126)
Q Consensus 92 I-dv~~~Q~GG~ 102 (126)
| .+..+..||.
T Consensus 77 Iv~lv~k~~~~~ 88 (368)
T 1oqy_A 77 VVVMVTKTKAGQ 88 (368)
T ss_dssp EEEEEECCCSSS
T ss_pred EEEEEecCCCCC
Confidence 8 5555565654
No 97
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.52 E-value=7.3e-07 Score=61.25 Aligned_cols=77 Identities=6% Similarity=0.130 Sum_probs=66.5
Q ss_pred CCCCCcEEEEEEeccC--CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCe---e----cCCCC
Q psy4523 9 KSTDEHINLKVLGQDN--NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ---A----INEQD 79 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g--~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~---r----L~~~~ 79 (126)
.-++..|+|.|.+... ..+.++|.++.++..|+....++ .|+++++.|+.|.|+ . +.++.
T Consensus 9 ~~~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~-----------~Gip~~~QrLi~~g~~g~~~~~L~~D~~ 77 (97)
T 2kj6_A 9 SHGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKK-----------CGTSVNSMALELYDDSGSKVAVLSDDSR 77 (97)
T ss_dssp CCCCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHH-----------HCCCTTSEEEEEECSSSCBCCCSSGGGS
T ss_pred cCCCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHH-----------HCcCHHHeEEEEecCCCcccceecCCcC
Confidence 3466789999987554 36889999999999999999999 999999999999883 3 37888
Q ss_pred CccccCCCCCCEEEEEe
Q psy4523 80 TPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 80 TP~dL~MeDGD~Idv~~ 96 (126)
|..++++++|++|.+.-
T Consensus 78 tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 78 PLGFFSPFDGFRLHIID 94 (97)
T ss_dssp CHHHHCCCSCCEEEEEE
T ss_pred CHHHCCCCCCCEEEEEe
Confidence 99999999999998864
No 98
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=98.52 E-value=9.4e-07 Score=63.31 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=64.6
Q ss_pred EEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCC------
Q psy4523 15 INLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEE------ 88 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeD------ 88 (126)
+-|+|+. .+..+++.+++++++..|+....++ .|++++..||+|+|+.|.++.|.+++++++
T Consensus 3 vFl~Ikr-~ktTI~ldve~sdTV~~lK~kI~~~-----------~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q 70 (118)
T 4ajy_B 3 VFLMIRR-HKTTIFTDAKESSTVFELKRIVEGI-----------LKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQ 70 (118)
T ss_dssp EEEEEEE-BTEEEEEEEETTSBHHHHHHHHHHH-----------HCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTT
T ss_pred eEEEEec-CCEEEEEEcCCCChHHHHHHHHHHH-----------HCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCC
Confidence 4455654 2446788999999999999999999 999999999999999999999999999999
Q ss_pred -CCEEEEEeee
Q psy4523 89 -GDTIEIYQQQ 98 (126)
Q Consensus 89 -GD~Idv~~~Q 98 (126)
+.+|...++.
T Consensus 71 ~~atl~Lvlr~ 81 (118)
T 4ajy_B 71 APATVGLAFRA 81 (118)
T ss_dssp BCEEEEEEECC
T ss_pred CCCEEEEEEec
Confidence 9999999996
No 99
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=6.6e-07 Score=60.12 Aligned_cols=72 Identities=14% Similarity=0.307 Sum_probs=63.2
Q ss_pred CCcEEEEEEeccCCEE--EE-EecCCCcHHHHHHHHHH-HhhhhhhhhhhhccCccceeEEEEC--CeecCCCCCccccC
Q psy4523 12 DEHINLKVLGQDNNVV--QF-KIKKGTPLRKLMNAYCE-RCVSILSVLITLQNLSMSTVRFRFD--GQAINEQDTPSTLE 85 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v--~f-kIk~tt~l~kL~~~y~~-~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL~~~~TP~dL~ 85 (126)
-..+.|.|++..|... .+ .|.+++++..|++..++ + .|++++..||+|. |+.|.++.|.++++
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~-----------~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~ 76 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTH-----------PQWYPARQSLRLDPKGKSLKDEDVLQKLP 76 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHC-----------SSSCTTTCCEESSTTSCCCCTTCBTTTSS
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHh-----------cCCChHHeEEEecCCCcCcCCCCCHHHcC
Confidence 3458899998877664 47 89999999999999999 5 7899999999987 99999999999999
Q ss_pred CCCCCEEEE
Q psy4523 86 MEEGDTIEI 94 (126)
Q Consensus 86 MeDGD~Idv 94 (126)
+.+|++|.+
T Consensus 77 i~~~stl~~ 85 (88)
T 2dzj_A 77 VGTTATLYF 85 (88)
T ss_dssp CCSEEEEEE
T ss_pred CCCCCEEEE
Confidence 999999765
No 100
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.43 E-value=1.8e-06 Score=60.99 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=64.0
Q ss_pred CcEEEEEEeccCC-EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC---ee----cCCCCCcccc
Q psy4523 13 EHINLKVLGQDNN-VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG---QA----INEQDTPSTL 84 (126)
Q Consensus 13 ~~I~Ikv~~~~g~-~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG---~r----L~~~~TP~dL 84 (126)
..|+|.|.+..+. .+.++|.++.++..|+...++. .|++++..|+.|.| +. +.++.|..++
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~-----------~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y 73 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELV-----------VGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 73 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHH-----------HCCCTTTEEEEEECSSSSEEEECCCCSSBTTTT
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHH-----------hCCCHHHeEEEEecCCCccccccCCCcCCHHHC
Confidence 4789999886443 5789999999999999999999 99999999999977 42 3788999999
Q ss_pred CCCCCCEEEEEe
Q psy4523 85 EMEEGDTIEIYQ 96 (126)
Q Consensus 85 ~MeDGD~Idv~~ 96 (126)
++++|++|+|..
T Consensus 74 ~i~~g~~ihvvd 85 (122)
T 1t0y_A 74 GVRDGYRIHAVD 85 (122)
T ss_dssp TCCSSEEEEEEE
T ss_pred CCCCCCEEEEEe
Confidence 999999999886
No 101
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.35 E-value=1.7e-06 Score=58.04 Aligned_cols=73 Identities=3% Similarity=0.032 Sum_probs=62.5
Q ss_pred cEEEEEEecc--CCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE-------CCeecCCCCCcccc
Q psy4523 14 HINLKVLGQD--NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF-------DGQAINEQDTPSTL 84 (126)
Q Consensus 14 ~I~Ikv~~~~--g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f-------dG~rL~~~~TP~dL 84 (126)
.|.|.|.... .+....++.++.++..|+.....+ .|+++++.|+.| .|+.+.++.|..++
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~-----------~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y 70 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTH-----------FATPPEYMQLQLIDDRGITIEKNMANDKQLGYY 70 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTT-----------SCCCGGGEEEEEECTTSCEEESSCCTTSBGGGG
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHH-----------HCCCHHHEEEEEecCCCCceeeEcCCCCCHHHC
Confidence 3566665432 355679999999999999999999 999999999996 48889999999999
Q ss_pred CCCCCCEEEEEee
Q psy4523 85 EMEEGDTIEIYQQ 97 (126)
Q Consensus 85 ~MeDGD~Idv~~~ 97 (126)
+++||.+|++...
T Consensus 71 ~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 71 QCRDEFVIHVVDL 83 (86)
T ss_dssp TCCTTCEEEEEEC
T ss_pred CCCCCCEEEEEeC
Confidence 9999999998743
No 102
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.33 E-value=6.8e-08 Score=74.10 Aligned_cols=73 Identities=12% Similarity=0.216 Sum_probs=1.9
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
.|.|++.+|..+.+.|.+++++..|+...++. .|+++++.+|+|+|+.|.++.|.. +|++|++.
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~k-----------eGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLv 65 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQD-----------MGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLS 65 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHH-----------hCcChhHEEEEecCeECCCCCccc-----CCCEEEEE
Confidence 46677777888899999999999999999999 999999999999999999988877 99999999
Q ss_pred eeecCCCcC
Q psy4523 96 QQQTGGFKQ 104 (126)
Q Consensus 96 ~~Q~GG~~~ 104 (126)
++..||..-
T Consensus 66 lRLrGG~~k 74 (189)
T 2xzm_9 66 LKLLGGKKK 74 (189)
T ss_dssp ------CCC
T ss_pred EecCCCccc
Confidence 999999764
No 103
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.33 E-value=6.5e-07 Score=59.24 Aligned_cols=71 Identities=13% Similarity=0.249 Sum_probs=60.3
Q ss_pred EEEEEEeccCCEEEEE-ecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--CeecC---CCCCccccCCCC
Q psy4523 15 INLKVLGQDNNVVQFK-IKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQAIN---EQDTPSTLEMEE 88 (126)
Q Consensus 15 I~Ikv~~~~g~~v~fk-Ik~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL~---~~~TP~dL~MeD 88 (126)
+.|+|+..+|..+ +. +..++++..|+...++. .|++++.++|+|. |+.+. ++.|.+++++.+
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~-----------~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~ 68 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAI-----------TGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQS 68 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHH-----------TCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCT
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHH-----------hCCCccceEEEeCCCCcccccCCCCCCHHHcCCCC
Confidence 3578888888654 67 89999999999999999 9999888888886 57774 678999999999
Q ss_pred CCEEEEEee
Q psy4523 89 GDTIEIYQQ 97 (126)
Q Consensus 89 GD~Idv~~~ 97 (126)
|++|.|...
T Consensus 69 g~~l~v~~~ 77 (86)
T 2kzr_A 69 GDMLIVEED 77 (86)
T ss_dssp TCEEECCCC
T ss_pred CCEEEEEeC
Confidence 999888755
No 104
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.27 E-value=6.2e-06 Score=55.57 Aligned_cols=77 Identities=12% Similarity=0.284 Sum_probs=65.0
Q ss_pred CCCCcEEEEEEec---cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC-----ee--c-CCC
Q psy4523 10 STDEHINLKVLGQ---DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG-----QA--I-NEQ 78 (126)
Q Consensus 10 ~~~~~I~Ikv~~~---~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG-----~r--L-~~~ 78 (126)
..+..|+|.|.+. ++..+..++.++.++.+|+...+.. .|+++..+++.|.+ .. + ++.
T Consensus 5 ~~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~-----------~gip~~~q~L~~~~~~~~~~~~~L~~d~ 73 (97)
T 1wjn_A 5 SSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRL-----------LKVPVSELLLSYESSKMPGREIELENDL 73 (97)
T ss_dssp SSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTT-----------TTCCTTTCEEEEECTTSCSCEEECCCSS
T ss_pred ccCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHH-----------HCCChhHeEEEEEcCCCCceeeccCCCc
Confidence 4566799988763 5678889999999999999999999 99999999999863 12 3 567
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
.|..+++++|||+|.|...
T Consensus 74 ~~L~~y~i~~G~~I~V~d~ 92 (97)
T 1wjn_A 74 QPLQFYSVENGDCLLVRWS 92 (97)
T ss_dssp SBSGGGTCCTTCEEEEECC
T ss_pred ccHhhcCCCCCCEEEEEec
Confidence 8899999999999998764
No 105
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=97.96 E-value=2.1e-05 Score=63.99 Aligned_cols=73 Identities=8% Similarity=0.139 Sum_probs=64.7
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEE---ECCeecCCCCCccccCCCCC
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFR---FDGQAINEQDTPSTLEMEEG 89 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~---fdG~rL~~~~TP~dL~MeDG 89 (126)
+.|+|+|+. .|+.+.+.|.+++++..|+...++. .|+++...+++ |.|+.+.++.|..++++++|
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~-----------tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g 71 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRK-----------TQVRPERQKLLNLKYKGKTAADNVKISALELKPN 71 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHH-----------HCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHH-----------HCcCHHHeEEeecccCCcccCccccHHHcCCCCC
Confidence 358888886 5788889999999999999999999 99999999999 89999999999999999999
Q ss_pred CEEEEEee
Q psy4523 90 DTIEIYQQ 97 (126)
Q Consensus 90 D~Idv~~~ 97 (126)
.+|.++-.
T Consensus 72 ~~l~L~gs 79 (320)
T 3shq_A 72 FKLMMVGS 79 (320)
T ss_dssp CEEEEECC
T ss_pred CEEEEEcc
Confidence 99988743
No 106
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.96 E-value=4.3e-05 Score=52.74 Aligned_cols=76 Identities=5% Similarity=0.142 Sum_probs=63.0
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE-CCeecCCCCCccccCCCCCCEE
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF-DGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f-dG~rL~~~~TP~dL~MeDGD~I 92 (126)
.+.+++.. .|+.+.+.|.+++++..|+...+++ .|++++..+++| .|.++.++.|..++++..|++|
T Consensus 9 m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~-----------tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL 76 (100)
T 2dzm_A 9 MLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENE-----------LQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSL 76 (100)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHH-----------HCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEE
T ss_pred eEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHH-----------HCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEE
Confidence 45555554 5888899999999999999999999 999999999986 3334888899999999999999
Q ss_pred EEEee-ecCC
Q psy4523 93 EIYQQ-QTGG 101 (126)
Q Consensus 93 dv~~~-Q~GG 101 (126)
.+.+. +++.
T Consensus 77 ~lvl~~~~~~ 86 (100)
T 2dzm_A 77 YVLTPDLPPP 86 (100)
T ss_dssp EECCSSSCCC
T ss_pred EEEecCCCCC
Confidence 88754 5543
No 107
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.35 E-value=0.00069 Score=46.33 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=66.6
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEE
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTI 92 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~I 92 (126)
.-+.|.|.+.+++...++|.++++|..+.+.-|++ .|++++...+.|+++.|+.+..--=.+|-+|..+
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K-----------~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkL 76 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRR-----------QDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKL 76 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHH-----------TTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEE
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHH-----------hCCChhhCeEEeCCEeccccceeEecCCCCCCEE
Confidence 34478888899999999999999999999999999 9999999999999999999998888899999998
Q ss_pred EEEee
Q psy4523 93 EIYQQ 97 (126)
Q Consensus 93 dv~~~ 97 (126)
+....
T Consensus 77 ELv~~ 81 (90)
T 2al3_A 77 EMVPV 81 (90)
T ss_dssp EEECS
T ss_pred EEEEc
Confidence 88654
No 108
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.32 E-value=0.00015 Score=47.76 Aligned_cols=70 Identities=10% Similarity=0.199 Sum_probs=53.3
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCee-----cCCCCCccccCCCC
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQA-----INEQDTPSTLEMEE 88 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~r-----L~~~~TP~dL~MeD 88 (126)
.+.|+|++.+|. ..+.+.+++++..|++..++. .+++.+...+.+.-.+ ..++.|.+++++..
T Consensus 4 ~m~lRvrs~~G~-~Ri~v~~~~t~~~L~~~I~~~-----------~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~h 71 (80)
T 2pjh_A 4 SIIIRVQSPDGV-KRITATKRETAATFLKKVAKE-----------FGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKH 71 (80)
T ss_dssp CCCCEEECSSEE-EECCCCSSCCHHHHHHHHHHH-----------TCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCT
T ss_pred cEEEEEECCCCC-EEEEcCCcChHHHHHHHHHHH-----------cCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCC
Confidence 478999998883 346688999999999999999 7776555444443332 34788999999999
Q ss_pred CCEEEEE
Q psy4523 89 GDTIEIY 95 (126)
Q Consensus 89 GD~Idv~ 95 (126)
||.|.+.
T Consensus 72 Gd~l~l~ 78 (80)
T 2pjh_A 72 GDLLFLF 78 (80)
T ss_dssp TCCEEC-
T ss_pred CCEEEEe
Confidence 9998764
No 109
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.81 E-value=0.0028 Score=42.35 Aligned_cols=71 Identities=18% Similarity=0.311 Sum_probs=58.3
Q ss_pred CcEEEEEEe--ccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc-----ceeEEEECCeecCCCCCccccC
Q psy4523 13 EHINLKVLG--QDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM-----STVRFRFDGQAINEQDTPSTLE 85 (126)
Q Consensus 13 ~~I~Ikv~~--~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~-----~~~rF~fdG~rL~~~~TP~dL~ 85 (126)
.+|+|.+.- ..++.+-++|...-++++|.+...+. .++.. ..+|..-.|..|.++++.++.+
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea-----------~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ 71 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQA-----------QSVSMPPREGHWIRVVNKDKVFSGECKLSDCG 71 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHH-----------SCCCSCCCTTCEEEEGGGTEEEETTSBTGGGT
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHH-----------hCCCcCCCCCCEEEEecCCEEEcCCCEEeeCC
Confidence 467777763 45788889999999999999999988 55543 2456665799999999999999
Q ss_pred CCCCCEEEE
Q psy4523 86 MEEGDTIEI 94 (126)
Q Consensus 86 MeDGD~Idv 94 (126)
+.|||.|++
T Consensus 72 ItnGD~Lei 80 (81)
T 2bps_A 72 ITNGDRLEI 80 (81)
T ss_dssp CCTTCEEEE
T ss_pred cCCCCEEEE
Confidence 999999986
No 110
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.43 E-value=0.03 Score=36.45 Aligned_cols=72 Identities=4% Similarity=0.116 Sum_probs=55.8
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeec---CCCCCccccCC
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAI---NEQDTPSTLEM 86 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL---~~~~TP~dL~M 86 (126)
.+..+|.|+-.+|..+.-+...+++++.|++... . .+.+...++|.- =.+.+ +.+.|.+++++
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~-~-----------~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL 72 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVA-S-----------KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKL 72 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHH-H-----------TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHH-H-----------cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCC
Confidence 4577888888999999999999999999888554 4 344566777773 35667 45789999999
Q ss_pred CCCCEEEEE
Q psy4523 87 EEGDTIEIY 95 (126)
Q Consensus 87 eDGD~Idv~ 95 (126)
..++++-|-
T Consensus 73 ~p~a~L~ve 81 (84)
T 3qx1_A 73 FPQETLFLE 81 (84)
T ss_dssp CSEEEEEEE
T ss_pred CCCCEEEEE
Confidence 999887764
No 111
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=96.13 E-value=0.03 Score=38.29 Aligned_cols=52 Identities=8% Similarity=0.168 Sum_probs=45.0
Q ss_pred cEEEEEEeccC-CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecC
Q psy4523 14 HINLKVLGQDN-NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAIN 76 (126)
Q Consensus 14 ~I~Ikv~~~~g-~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~ 76 (126)
+..|+|-+... ...++.|.+++++..++++.+++ .|+++.+.+++|.|+.+.
T Consensus 12 rkvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eq-----------TgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 12 RMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQ-----------TKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHH-----------HCCCGGGEEEEETTEEEC
T ss_pred ceeEEEEEcccceEEEEEeccchHHHHHHHHHHHH-----------hCCCHHHHHHHhCCCccc
Confidence 45677777664 55579999999999999999999 999999999999998766
No 112
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.03 E-value=0.047 Score=37.44 Aligned_cols=78 Identities=10% Similarity=0.151 Sum_probs=58.3
Q ss_pred cCCCCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--CeecC--CCCCc
Q psy4523 6 KESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQAIN--EQDTP 81 (126)
Q Consensus 6 ~~~~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL~--~~~TP 81 (126)
||+.+....++|.|+-.+|..+.-+...+++++.|++..... +.....++|.-. .+.+. .+.|.
T Consensus 15 EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~------------~~~~~~f~L~t~fPrk~l~~d~~~TL 82 (109)
T 2cr5_A 15 EPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV------------GYHKSLYRLSTSFPRRALEVEGGSSL 82 (109)
T ss_dssp CCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH------------TCCTTTEEEECSSSCCBCCCCSSCBH
T ss_pred CCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc------------CCCCCCeEEEeCCCCcCCCCCCCCCH
Confidence 444455678999999999999999999999999998865533 344556666532 55564 57999
Q ss_pred cccCCCCCCEEEEE
Q psy4523 82 STLEMEEGDTIEIY 95 (126)
Q Consensus 82 ~dL~MeDGD~Idv~ 95 (126)
+++++-...++.|-
T Consensus 83 ~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 83 EDIGITVDTVLNVE 96 (109)
T ss_dssp HHHTCSSCEEEEEE
T ss_pred HHcCCCCCeEEEEE
Confidence 99999998887664
No 113
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=95.94 E-value=0.031 Score=35.45 Aligned_cols=57 Identities=25% Similarity=0.487 Sum_probs=43.4
Q ss_pred EEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCc--cceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 29 FKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS--MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 29 fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~--~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+.+ ...++..|.+..+.+ .++. ...+.+..||+.+...+| -+.|||+|.++.--.||
T Consensus 16 ~e~-~~~tv~~ll~~L~~~-----------~~l~~~l~~~~vavN~~~v~~~~~----~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEK-----------EGLKEWLGVCAIALNDHLIDNLNT----PLKDGDVISLLPPVCGG 74 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTC-----------TTTTTTTTTCEEEESSSEECCTTC----CCCTTCEEEEECCBCCC
T ss_pred Eee-CCCcHHHHHHHHHHC-----------cCHHHHhhccEEEECCEEcCCCCc----CCCCCCEEEEECCCCCC
Confidence 445 568899999988876 5443 257889999999765444 58999999999876666
No 114
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.65 E-value=0.2 Score=34.32 Aligned_cols=78 Identities=6% Similarity=0.074 Sum_probs=59.4
Q ss_pred CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--CeecC---CCCCccc
Q psy4523 9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQAIN---EQDTPST 83 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL~---~~~TP~d 83 (126)
.+.....+|.|+-.||..+.-+...+++++.|++..... .+.....+.|.-. -+.+. .+.|.++
T Consensus 8 ~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~-----------~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e 76 (109)
T 2dzk_A 8 RDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQT-----------VGNTYGNFSLATMFPRREFTREDYKRRLLD 76 (109)
T ss_dssp CCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHH-----------HTTSSCSCEEECSSSCCBCCTTTTTSBTGG
T ss_pred CCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-----------cCCCCCceEEEcCCCCcCCcccccCCCHHH
Confidence 444557888888899999999999999999999977776 5555556666543 44454 3689999
Q ss_pred cCCCCCCEEEEEee
Q psy4523 84 LEMEEGDTIEIYQQ 97 (126)
Q Consensus 84 L~MeDGD~Idv~~~ 97 (126)
+++-...++.|...
T Consensus 77 lgL~psa~L~v~~~ 90 (109)
T 2dzk_A 77 LELAPSASVVLLPA 90 (109)
T ss_dssp GTCSSEEEEEEECC
T ss_pred CCCCCceEEEEEEC
Confidence 99999987776654
No 115
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=95.62 E-value=0.076 Score=40.81 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=55.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccc-eeEEEE-C----CeecCC-CCCccccCCCCCCEEEEEeee
Q psy4523 26 VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMS-TVRFRF-D----GQAINE-QDTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 26 ~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~-~~rF~f-d----G~rL~~-~~TP~dL~MeDGD~Idv~~~Q 98 (126)
.+.+.+.+.+++..|++.-|+. .+++.+ .+|++. + ...|.+ +.|.+++++.+|+.|.+-++.
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~-----------~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKL-----------FNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHH-----------TTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred eEEEEecccCcHHHHHHHHHHH-----------hCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 3458889999999999999999 889886 699997 2 456765 589999999999999998887
Q ss_pred cCCC
Q psy4523 99 TGGF 102 (126)
Q Consensus 99 ~GG~ 102 (126)
.-|.
T Consensus 222 ~dg~ 225 (231)
T 3jyu_A 222 EDGT 225 (231)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 7664
No 116
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=95.18 E-value=0.31 Score=30.59 Aligned_cols=67 Identities=19% Similarity=0.398 Sum_probs=49.0
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id 93 (126)
.++|.|.+..+ +..+.+...+++..|.+. .+++...+.+..||.-+..++ -+.|||.|+
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~---------------l~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ 62 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGE---------------LEIPIETVVVKKNGQIVIDEE-----EIFDGDIIE 62 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHH---------------TTCCTTTEEEEETTEECCTTS-----BCCTTCEEE
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHH---------------hCCCCCCEEEEECCEECCCcc-----cCCCCCEEE
Confidence 37788876532 245677777888888763 445667788999999988665 799999999
Q ss_pred EEeeecCC
Q psy4523 94 IYQQQTGG 101 (126)
Q Consensus 94 v~~~Q~GG 101 (126)
++.--.||
T Consensus 63 ii~~V~GG 70 (70)
T 1ryj_A 63 VIRVIYGG 70 (70)
T ss_dssp EEECTTCC
T ss_pred EEeccccC
Confidence 98764444
No 117
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=94.65 E-value=0.095 Score=39.85 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=54.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccc-eeEEEE-C----CeecCC-CCCccccCCCCCCEEEEEeee
Q psy4523 26 VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMS-TVRFRF-D----GQAINE-QDTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 26 ~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~-~~rF~f-d----G~rL~~-~~TP~dL~MeDGD~Idv~~~Q 98 (126)
.+.+.+.+.+++..|++.-|+. .+++.+ .+|++. + ...|.+ +.|.+++++.+|+.|-+-++.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~-----------~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKI-----------FSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHH-----------TTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEcccchHHHHHHHHHHH-----------hCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 3568899999999999999999 889876 688885 2 455665 579999999999999998887
Q ss_pred cCCC
Q psy4523 99 TGGF 102 (126)
Q Consensus 99 ~GG~ 102 (126)
..|.
T Consensus 210 ~dg~ 213 (217)
T 4a3p_A 210 EDGT 213 (217)
T ss_dssp CC-C
T ss_pred CCCC
Confidence 7774
No 118
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=94.45 E-value=0.27 Score=34.51 Aligned_cols=74 Identities=9% Similarity=0.041 Sum_probs=54.7
Q ss_pred CCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeec---CCCCCcccc
Q psy4523 10 STDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAI---NEQDTPSTL 84 (126)
Q Consensus 10 ~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL---~~~~TP~dL 84 (126)
+....++|.|+-.+|..+.-++..+++|..|++... . .+.....+.|.- =.+.+ ..+.|..++
T Consensus 39 ~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~-~-----------~~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~ 106 (124)
T 1wj4_A 39 VNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQ-S-----------KGYPNERFELLTNFPRRKLSHLDYDITLQEA 106 (124)
T ss_dssp CSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHH-H-----------HHCCTTTEEEECSSSCCEETSSCSSSCTTTT
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHH-h-----------cCCCCCCeEEecCCCCcCCccCCCCCCHHHC
Confidence 345678899998999999999999999999988654 3 334445666663 36666 347899999
Q ss_pred CCCCCCEEEEE
Q psy4523 85 EMEEGDTIEIY 95 (126)
Q Consensus 85 ~MeDGD~Idv~ 95 (126)
+|-....+.|.
T Consensus 107 gL~psa~Liv~ 117 (124)
T 1wj4_A 107 GLCPQETVFVQ 117 (124)
T ss_dssp TCCSSBCCEEE
T ss_pred CCCCceEEEEE
Confidence 99887665553
No 119
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.05 E-value=0.15 Score=34.71 Aligned_cols=66 Identities=9% Similarity=0.192 Sum_probs=56.7
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC---CeecCCCCCccccCCCC
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD---GQAINEQDTPSTLEMEE 88 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd---G~rL~~~~TP~dL~MeD 88 (126)
..++.+-|..........+|.+.-||..|+-+.|++ ..+++..+.|+-| ++.|.-+.+..||+|..
T Consensus 8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~K-----------cefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSK-----------CEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHH-----------TTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhc-----------ccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 357788877766666789999999999999999999 7899999888875 77888899999999986
No 120
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=93.62 E-value=0.51 Score=30.38 Aligned_cols=72 Identities=13% Similarity=0.227 Sum_probs=47.6
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
.+..+.+....+++.|.+..+.+...+-.-.-...|.-...+.+..||+.+.. +| -+.|||+|.++.--.||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-~~----~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-GE----ATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-TS----BCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-Cc----ccCCCCEEEEECCCCCC
Confidence 56678887788999999998887211000000000111234789999999975 33 49999999999887776
No 121
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=92.84 E-value=0.73 Score=30.42 Aligned_cols=72 Identities=15% Similarity=0.315 Sum_probs=44.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
.+..+.+....++..|.+....+...+-.......|-....+.+..||+.+.. +.-+.|||+|.++.--.||
T Consensus 27 ~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 27 DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDVVGVFPPVSGG 98 (98)
T ss_dssp SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCEEEEESCC---
T ss_pred CeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCEEEEECCCCCC
Confidence 45677887889999999988877211000000001111356789999998863 4458999999998765554
No 122
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=92.53 E-value=0.33 Score=32.30 Aligned_cols=69 Identities=22% Similarity=0.284 Sum_probs=44.5
Q ss_pred CCcEEEEEEeccCCEEEEEecCC-CcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCC
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKG-TPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGD 90 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~t-t~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD 90 (126)
...++|.| +|+. +.+... .++..|.+. .++++..+.+..||+.+..+ .-++.-+.|||
T Consensus 18 ~~~M~I~v---NGe~--~el~~~~~Tv~dLL~~---------------L~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD 76 (87)
T 1tyg_B 18 GGRHMLQL---NGKD--VKWKKDTGTIQDLLAS---------------YQLENKIVIVERNKEIIGKE-RYHEVELCDRD 76 (87)
T ss_dssp ----CEEE---TTEE--ECCSSSCCBHHHHHHH---------------TTCTTSCCEEEETTEEECGG-GTTTSBCCSSS
T ss_pred CcceEEEE---CCEE--EECCCCCCcHHHHHHH---------------hCCCCCCEEEEECCEECChh-hcCCcCCCCCC
Confidence 44566666 5553 445565 788887763 44667778899999988753 23344599999
Q ss_pred EEEEEeeecCC
Q psy4523 91 TIEIYQQQTGG 101 (126)
Q Consensus 91 ~Idv~~~Q~GG 101 (126)
.|+++.--.||
T Consensus 77 ~Vei~~~V~GG 87 (87)
T 1tyg_B 77 VIEIVHFVGGG 87 (87)
T ss_dssp EEEEEEECCC-
T ss_pred EEEEEcccccC
Confidence 99999764443
No 123
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=92.42 E-value=0.4 Score=30.17 Aligned_cols=64 Identities=11% Similarity=0.172 Sum_probs=41.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 26 VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 26 ~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+..+. ....++..|.+..+.+...+ . .-+....+.+..||+.+.. +--+.|||+|.++.--.||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~-~-----~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRW-A-----LALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHH-H-----HHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhH-H-----HHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 44444 45678999998887662100 0 0122345789999998852 4468999999998776665
No 124
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=91.69 E-value=0.4 Score=29.94 Aligned_cols=60 Identities=10% Similarity=0.230 Sum_probs=42.9
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcccee--EEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTV--RFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~--rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
.+..+.+....++..|.+....+ ..- ...+ .+..||+.+..+ .-+.|||+|+++.--.||
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~-----------~p~-~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFER-----------YPQ-INNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHH-----------CGG-GTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-----------Ccc-hhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 34556666778999999987776 211 1234 788999998753 468999999998765554
No 125
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=91.13 E-value=0.24 Score=33.90 Aligned_cols=61 Identities=7% Similarity=0.212 Sum_probs=39.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC--CeecC--------------CCCCccccCCCCC
Q psy4523 26 VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD--GQAIN--------------EQDTPSTLEMEEG 89 (126)
Q Consensus 26 ~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd--G~rL~--------------~~~TP~dL~MeDG 89 (126)
.+.+.|.++.+|+.+++..+++-. ..+...+++...+ |+.|. -+.+..+|+++||
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~---------~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g 76 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSAS---------LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDG 76 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTT---------CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTT
T ss_pred cEEEEECCchhHHHHHHHHHhChH---------hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCC
Confidence 346788999999999999999711 1222223322211 22222 3456789999999
Q ss_pred CEEEEE
Q psy4523 90 DTIEIY 95 (126)
Q Consensus 90 D~Idv~ 95 (126)
++|.|.
T Consensus 77 ~ei~Vt 82 (98)
T 1y8x_B 77 QELAVA 82 (98)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999985
No 126
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=91.12 E-value=1.6 Score=30.57 Aligned_cols=71 Identities=6% Similarity=0.094 Sum_probs=50.8
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE--CCeecCC-CCCccccCCCCC
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF--DGQAINE-QDTPSTLEMEEG 89 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f--dG~rL~~-~~TP~dL~MeDG 89 (126)
...+|.|+-.||..+.-++..+++++.|++...... .+.....+.|.- =.+.+.+ +.|.+++++-..
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~----------~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~ps 120 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDAR----------PAMAATSFVLMTTFPNKELADENQTLKEANLLNA 120 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHC----------SGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhC----------cCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCc
Confidence 456666666899999999999999999998776640 233345566654 3566653 689999999886
Q ss_pred CEEE
Q psy4523 90 DTIE 93 (126)
Q Consensus 90 D~Id 93 (126)
-+|.
T Consensus 121 avl~ 124 (127)
T 1s3s_G 121 VIVQ 124 (127)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5543
No 127
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=90.46 E-value=0.85 Score=29.18 Aligned_cols=65 Identities=20% Similarity=0.398 Sum_probs=47.3
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEE
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIE 93 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Id 93 (126)
+|+|++.+. ....+.+...+++..|.+ . .|+++..+....||+.+..++ .-+||.|+
T Consensus 2 ~v~Vkl~g~--~~~~~ev~~g~Tv~dLL~----~-----------Lgl~~~~VvV~vNG~~v~~d~------~l~GD~Ve 58 (74)
T 2l32_A 2 NVTVEVVGE--ETSEVAVDDDGTYADLVR----A-----------VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVK 58 (74)
T ss_dssp EEEEECSSS--SEEEEECSTTCSHHHHHH----T-----------TCCCSSCCCEECCCCCCCTTS------SSCCCCEE
T ss_pred EEEEEEeCc--cceeEEcCCCCcHHHHHH----H-----------cCCCcceEEEEECCEECCHHH------CCCCCEEE
Confidence 366666532 445678888888887764 4 788888888888999887766 23599999
Q ss_pred EEeeecCC
Q psy4523 94 IYQQQTGG 101 (126)
Q Consensus 94 v~~~Q~GG 101 (126)
+..---||
T Consensus 59 Iv~~V~G~ 66 (74)
T 2l32_A 59 VLRLIKGG 66 (74)
T ss_dssp ECSSCSCC
T ss_pred EEEeeccc
Confidence 98664444
No 128
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=89.62 E-value=0.38 Score=30.73 Aligned_cols=61 Identities=15% Similarity=0.287 Sum_probs=43.3
Q ss_pred cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCCC
Q psy4523 23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGF 102 (126)
Q Consensus 23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG~ 102 (126)
+|+... + ...++..|.+ . .|+++..+-.-.||.-|.. ..-++.-+.|||.|+++.---||.
T Consensus 6 NG~~~e--~-~~~Tl~~LL~----~-----------l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 6 NGEQRE--V-QSASVAALMT----E-----------LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp TTEEEC--C-CCSBHHHHHH----H-----------TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCCC
T ss_pred CCEEEE--c-CCCcHHHHHH----H-----------cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCCc
Confidence 455443 3 5677777765 4 6777888889999988864 344456789999999987755554
No 129
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=89.28 E-value=1.6 Score=29.48 Aligned_cols=72 Identities=21% Similarity=0.327 Sum_probs=49.8
Q ss_pred CcEEEEEEeccC---CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCC
Q psy4523 13 EHINLKVLGQDN---NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEG 89 (126)
Q Consensus 13 ~~I~Ikv~~~~g---~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDG 89 (126)
+.|.|.|...-- ..+.+.+...+++..+.++.--. .....++.+.+.+-.+|+.+. .+--++||
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~--------~~~peIdl~~~~V~Vng~~v~-----~d~~L~dG 77 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGIL--------SQFPEIDLSTNKIGIFSRPIK-----LTDVLKEG 77 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHH--------HHCTTCCTTTSEEEEEECSCC-----TTCBCCTT
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCC--------ccCCcccccccEEEEcCEECC-----CCccCCCC
Confidence 467777775432 23457788999999998876531 001356666788888998886 34449999
Q ss_pred CEEEEEee
Q psy4523 90 DTIEIYQQ 97 (126)
Q Consensus 90 D~Idv~~~ 97 (126)
|.|+++--
T Consensus 78 DRVEIyrp 85 (97)
T 2hj1_A 78 DRIEIYRP 85 (97)
T ss_dssp CEEEECCC
T ss_pred CEEEEEec
Confidence 99999843
No 130
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=88.57 E-value=0.57 Score=33.23 Aligned_cols=58 Identities=14% Similarity=0.291 Sum_probs=45.2
Q ss_pred cCCCCCCCcEEEEEEecc------C---------CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE
Q psy4523 6 KESKSTDEHINLKVLGQD------N---------NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF 70 (126)
Q Consensus 6 ~~~~~~~~~I~Ikv~~~~------g---------~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f 70 (126)
||..+.--+++|+|.+.+ | ....|+|.++++|..++...++. .|++++.+||+.
T Consensus 22 KEr~EahlY~~vkv~t~~~f~~~~gfDL~~~~~~~~~~~rv~k~~~~~~~~~~va~~-----------lg~~~~~~RlW~ 90 (130)
T 2kvr_A 22 KERQEAHLYMQVQIVAEDQFCGHQGNDMYDEEKVKYTVFKVLKNSSLAEFVQSLSQT-----------MGFPQDQIRLWP 90 (130)
T ss_dssp CCCCSSTTCCEEEEECCSTTTTCCCCSSCCSSSCSCEEEECCTTSBHHHHHHHHHHH-----------HCCCGGGCEEEE
T ss_pred HHHHHHhceeEEEEecHHHHHhccCccCcCCccCCcceEEEeccCcHHHHHHHHHHH-----------hCCCcccEEEEE
Confidence 344555668888887522 1 23479999999999999999999 999999999998
Q ss_pred CCee
Q psy4523 71 DGQA 74 (126)
Q Consensus 71 dG~r 74 (126)
=-.|
T Consensus 91 ~~~R 94 (130)
T 2kvr_A 91 MQAR 94 (130)
T ss_dssp CCCC
T ss_pred eecC
Confidence 5444
No 131
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=88.55 E-value=2.2 Score=27.05 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=42.7
Q ss_pred EEecCCCcHHHHHHHHHHHhhhhhhh-hhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 29 FKIKKGTPLRKLMNAYCERCVSILSV-LITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 29 fkIk~tt~l~kL~~~y~~~~~~~~~~-~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+.+....++..|.+..+.+...+-.. .....| -...+.+..||+.+...+ -.+.-+.|||+|.++.--.||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g-~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNN-LFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSC-STTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccC-cCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence 45555689999999888772100000 000112 124678999999886321 223348999999998765554
No 132
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=88.48 E-value=1 Score=27.61 Aligned_cols=61 Identities=15% Similarity=0.351 Sum_probs=41.0
Q ss_pred cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+|+.+ .+....++..|.+.. +++...+.+..||+.+... .-.+--+.|||.|+++.--.||
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l---------------~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL---------------DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH---------------TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred CCEEE--EcCCCCcHHHHHHHc---------------CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 45543 445667888777643 4556778899999988753 1123358999999998764444
No 133
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=88.47 E-value=1.5 Score=30.04 Aligned_cols=86 Identities=16% Similarity=0.223 Sum_probs=53.6
Q ss_pred CCCCCcEEEEEEeccCCEEEEEecC-CCcHHHHHHHHHHHhh---h-----hhhhhhhhccCccce-eEEEECCeecCCC
Q psy4523 9 KSTDEHINLKVLGQDNNVVQFKIKK-GTPLRKLMNAYCERCV---S-----ILSVLITLQNLSMST-VRFRFDGQAINEQ 78 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g~~v~fkIk~-tt~l~kL~~~y~~~~~---~-----~~~~~~~~~gl~~~~-~rF~fdG~rL~~~ 78 (126)
......|+|.|...++....|.|.+ .+.|..++++-- .++ + +++|+.....-..+. -.|.-||+.+.
T Consensus 3 ~~g~k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~~-~ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~-- 79 (101)
T 3u7z_A 3 SEGEKHITVTVIHGDQTENVFEFDTDAKYLGEVLESEN-LVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVN-- 79 (101)
T ss_dssp --CCEEEEEEEECTTSCEEEEEEEECCSBHHHHHHHTT-CEEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECC--
T ss_pred ccceeEEEEEEEcCCCceeEEEEcCCccHHHHHHHHcC-ccccccccccceEEEEcCEecCCCCCCEEEEEECCEEhh--
Confidence 4456789999999988887777774 334555443222 222 1 111333332222223 34566898887
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
.-+.++.++|||.|.+.+.
T Consensus 80 ~Ga~~~~v~dGD~i~~~~t 98 (101)
T 3u7z_A 80 TSADQTPVSDGDAFELTLK 98 (101)
T ss_dssp SCGGGCBCCTTCEEEEEEE
T ss_pred hchhheEecCCCEEEEEEe
Confidence 5789999999999998865
No 134
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=88.11 E-value=1.8 Score=27.91 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=43.6
Q ss_pred EEecCCCcHHHHHHHHHHHhhhhhhhhhhh--ccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 29 FKIKKGTPLRKLMNAYCERCVSILSVLITL--QNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 29 fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~--~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+.. ...++..|++..+++...+-...... .|--...+.+..||+.+...+-+ +.-+.|||+|.++.--.||
T Consensus 21 ~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 21 VSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEECCTTC
T ss_pred Eec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEECCCCCC
Confidence 443 45799999999988721100000000 11112358899999998753222 2348999999999887776
No 135
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=87.95 E-value=1.7 Score=28.85 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=40.9
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECC
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG 72 (126)
..++|||... ..+.++|.+..++..|.+..+++ .+++.+.++|.|.-
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~k-----------L~l~~~~~~LsYk~ 50 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKK-----------LELRLEHTKLSYRP 50 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHH-----------TTCCGGGCCEEECC
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHH-----------hCCCcceeEEEeeC
Confidence 3589999886 67899999999999999999999 88888888888853
No 136
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=87.85 E-value=0.3 Score=31.64 Aligned_cols=65 Identities=12% Similarity=0.265 Sum_probs=44.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCc-cceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS-MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~-~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+|+...+..+...++..|.+ . .|++ +..+-.-.||.-|.. ..-++.-+.|||.|+++.---||
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~----~-----------l~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLS----A-----------LKVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHH----H-----------HTCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECCCCCCS
T ss_pred CCEEEEcCCCCCCcHHHHHH----H-----------cCCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEeeecCC
Confidence 45544332115678887765 3 5666 777778899988865 44455678999999998875566
Q ss_pred Cc
Q psy4523 102 FK 103 (126)
Q Consensus 102 ~~ 103 (126)
..
T Consensus 70 ~~ 71 (78)
T 2k5p_A 70 KL 71 (78)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 137
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=87.68 E-value=3 Score=27.43 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=43.9
Q ss_pred CEEEEEec--CCCcHHHHHHHHHHHhhh-hhhhh-hhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecC
Q psy4523 25 NVVQFKIK--KGTPLRKLMNAYCERCVS-ILSVL-ITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTG 100 (126)
Q Consensus 25 ~~v~fkIk--~tt~l~kL~~~y~~~~~~-~~~~~-~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~G 100 (126)
.+..+.+. ...+++.|.+..+++... +-... -...|--...+.+..||..+..... .+.-++|||+|.++.--.|
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~-~d~~L~dgDeVa~~Ppv~G 98 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGE-KDYILEDGDIISFTSTLHG 98 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTG-GGCBCCTTCEEEEEECTTC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCC-CCcCcCCCCEEEEECCCCC
Confidence 44556665 578999999998887210 00000 0000111123568889987652111 2234899999999887666
Q ss_pred C
Q psy4523 101 G 101 (126)
Q Consensus 101 G 101 (126)
|
T Consensus 99 G 99 (99)
T 2qjl_A 99 G 99 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 138
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=87.63 E-value=3.6 Score=27.43 Aligned_cols=62 Identities=8% Similarity=0.125 Sum_probs=50.8
Q ss_pred EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC---ccceeEEEECC--eecCCCCCccccCCCCCCEEEEEee
Q psy4523 28 QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL---SMSTVRFRFDG--QAINEQDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 28 ~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl---~~~~~rF~fdG--~rL~~~~TP~dL~MeDGD~Idv~~~ 97 (126)
-+-|...++|..+-++.+-.+++ .-+ +-..++.+++| +.+..+.|.++.+|..-|.|||+.+
T Consensus 16 LV~VDt~dTmdqVA~kvA~HsVG--------rRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 16 LVPVDTEDTMDQVAEKCAYHSIN--------RRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEECTTCBHHHHHHHHHTTTBT--------TTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEecCCCcHHHHHHHHhhhhcc--------eecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 47788889999999998888543 222 22368999999 9999999999999999999999864
No 139
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=87.63 E-value=1.4 Score=26.80 Aligned_cols=60 Identities=15% Similarity=0.350 Sum_probs=40.1
Q ss_pred cCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 23 DNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 23 ~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+|+++. + ...++..|.+. .++++..+.+..||+.+..+ .-.+.-+.|||.|+++.--.||
T Consensus 5 Ng~~~~--~-~~~tv~~ll~~---------------l~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPRP--L-EGKTLKEVLEE---------------MGVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEEC--C-TTCCHHHHHHH---------------HTBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEEE--c-CCCcHHHHHHH---------------cCCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 455443 4 56777777664 34556778899999988753 2223468999999999764444
No 140
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=87.50 E-value=1.3 Score=31.58 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=29.1
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHH
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCER 47 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~ 47 (126)
.|+|+-.||....+.|..+.+...++...|++
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~k 44 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICAR 44 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHH
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHH
Confidence 46666689999999999999999999999999
No 141
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=85.46 E-value=1.4 Score=29.80 Aligned_cols=67 Identities=12% Similarity=0.245 Sum_probs=42.9
Q ss_pred CCccccCCCCCCCcEEEEEEeccC----CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCe--e
Q psy4523 1 MTEEKKESKSTDEHINLKVLGQDN----NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ--A 74 (126)
Q Consensus 1 ~~~~~~~~~~~~~~I~Ikv~~~~g----~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~--r 74 (126)
|+++. +.+.++|+|+++...+ ....|.|..+.++..++....++ ..++ .+ |+|-+. .
T Consensus 3 ~~~~~---~~~~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkr-----------L~l~--al-Flyvn~~~~ 65 (96)
T 1wz3_A 3 MATES---PNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQ-----------LHSD--SL-FVYVNSAFS 65 (96)
T ss_dssp ------------CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHH-----------HTCS--SC-EEEEEEEEC
T ss_pred cCCCC---CCCCCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHh-----------cCCc--eE-EEEECCccc
Confidence 55533 4557789999987533 23479999999999999999999 6665 43 555444 3
Q ss_pred cCCCCCcccc
Q psy4523 75 INEQDTPSTL 84 (126)
Q Consensus 75 L~~~~TP~dL 84 (126)
-..++|..+|
T Consensus 66 Ps~d~~m~~L 75 (96)
T 1wz3_A 66 PNPDESVIDL 75 (96)
T ss_dssp CCTTSBHHHH
T ss_pred CChhhHHHHH
Confidence 4456777776
No 142
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=82.78 E-value=5.2 Score=26.71 Aligned_cols=62 Identities=10% Similarity=0.182 Sum_probs=51.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccC--ccceeEEEECCee--cCCCCCccccCCCCCCEEEEEe
Q psy4523 27 VQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL--SMSTVRFRFDGQA--INEQDTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 27 v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl--~~~~~rF~fdG~r--L~~~~TP~dL~MeDGD~Idv~~ 96 (126)
.-+-|...+++..+-++.+..+++ .-+ .+..+|...+|.. +..+.|.++.|+..-|.|+++.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VG--------rrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVN--------RRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBT--------TTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcc--------eeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 347888999999999999988643 112 1347999999999 9999999999999999999975
No 143
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=82.06 E-value=14 Score=28.41 Aligned_cols=63 Identities=8% Similarity=0.190 Sum_probs=46.1
Q ss_pred CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc-ceeEEEE--CCee--cCCCCCccccC
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM-STVRFRF--DGQA--INEQDTPSTLE 85 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~-~~~rF~f--dG~r--L~~~~TP~dL~ 85 (126)
.+..|.++|.-.|| .+.|.|...++-+.|++..|++ .|+.. +-+-+.| +|.. |..+.+..+.+
T Consensus 19 ~~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~-----------l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~ 86 (314)
T 1h4r_A 19 QPKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRT-----------LGLRETWFFGLQYTIKDTVAWLKMDKKVLDHD 86 (314)
T ss_dssp --CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHH-----------HTCCCGGGEEEEEEETTEEEECCTTSBGGGSS
T ss_pred CCCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHH-----------hCCCCCccceEEEEeCCcCeeCCCccCHHHcC
Confidence 46789999999998 7889999999999999999999 77753 3344444 4543 56666655544
No 144
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=81.77 E-value=3.5 Score=35.16 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=58.0
Q ss_pred CCCcEEEEEEecc--CCEE----EEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEEC------CeecC-C
Q psy4523 11 TDEHINLKVLGQD--NNVV----QFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD------GQAIN-E 77 (126)
Q Consensus 11 ~~~~I~Ikv~~~~--g~~v----~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fd------G~rL~-~ 77 (126)
....|-|.++..| ...+ ++-|++++++..|....+++ .|+++++=-.+|. -.+|. .
T Consensus 127 ~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~-----------~g~p~dt~l~lyEEi~~~~ie~l~~~ 195 (530)
T 2ylm_A 127 KDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDR-----------AGFIQDTSLILYEEVKPNLTERIQDY 195 (530)
T ss_dssp TTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHH-----------HTCCTTCCEEEEEEEETTEEEECCCS
T ss_pred CCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHH-----------cCCCCCCceEEEEecCCCceeEcccc
Confidence 4456777777554 4555 48899999999999999999 8998876444454 45677 7
Q ss_pred CCCcccc--CCCCCCEEEEEee
Q psy4523 78 QDTPSTL--EMEEGDTIEIYQQ 97 (126)
Q Consensus 78 ~~TP~dL--~MeDGD~Idv~~~ 97 (126)
+.|..+. ++.|||+|-+-..
T Consensus 196 ~~t~~~~~~eL~~GdII~fQ~~ 217 (530)
T 2ylm_A 196 DVSLDKALDELMDGDIIVFQKD 217 (530)
T ss_dssp SSBHHHHSTTCCTTEEEEEEEC
T ss_pred cccHHHHHhcccCCCEEEEEec
Confidence 8999999 9999997655544
No 145
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=81.44 E-value=5.4 Score=26.25 Aligned_cols=66 Identities=15% Similarity=0.285 Sum_probs=38.7
Q ss_pred CCcHHHHHHHHHHHhhhhhhhhhhhccCcccee-------EEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 34 GTPLRKLMNAYCERCVSILSVLITLQNLSMSTV-------RFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 34 tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~-------rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
..++..|.+..+.+...+-.... ..|--...+ .+..||+.+...+ -.+.-+.|||+|.++.--.||
T Consensus 27 ~~tv~~ll~~L~~~~p~l~~~l~-~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 27 GEKVIDVLLSLTDKYPALKYVIF-EKGDEKSEILILCGSINILINGNNIRHLE-GLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp CSSHHHHHHHHHHHCGGGTTTSB-CSCCTTSSCCCBCSSCEEEETTSCGGGTT-STTSCCCTTEEEEEECCCSCC
T ss_pred CCcHHHHHHHHHHHChhHHHHHh-cccccccceeccccccEEEECCEEccccC-CCCCCCCCCCEEEEECCCCCC
Confidence 68999999988877210000000 011001124 7899999885332 223358999999998765554
No 146
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=80.69 E-value=4.9 Score=24.31 Aligned_cols=61 Identities=10% Similarity=0.242 Sum_probs=37.9
Q ss_pred EEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEe
Q psy4523 17 LKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 17 Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~ 96 (126)
++|...+|.. +.+...+++..|...+... +....+--..||+.+..+ -.+++||.|++..
T Consensus 3 i~i~~p~g~~--~~~~~g~T~~dla~~i~~~-------------l~~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 3 VMVFTPKGEI--KRLPQGATALDFAYSLHSD-------------LGDHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp EEEECTTCCE--EEECTTCBHHHHHHHHCSH-------------HHHTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred EEEEcCCCCE--EEcCCCCcHHHHHHHHhhc-------------cccceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 4444456765 4555678887776654222 223345557799877663 4567899998875
Q ss_pred e
Q psy4523 97 Q 97 (126)
Q Consensus 97 ~ 97 (126)
-
T Consensus 63 ~ 63 (73)
T 2kmm_A 63 S 63 (73)
T ss_dssp C
T ss_pred C
Confidence 4
No 147
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=79.97 E-value=1 Score=28.57 Aligned_cols=53 Identities=19% Similarity=0.460 Sum_probs=37.6
Q ss_pred EEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCC
Q psy4523 29 FKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 29 fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+.+...+++..|.+ . .+++...+.+..||+.+..+ .-+.|||+|+++.--.||
T Consensus 25 ~~~~~~~Tv~dLl~----~-----------L~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 25 IEWREGMKVRDILR----A-----------VGFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCSSCCHHHHHH----T-----------TTCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EECCCCCcHHHHHH----H-----------hCCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 34455567766654 3 44566778899999998764 569999999998765554
No 148
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=78.74 E-value=14 Score=28.02 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=42.9
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccc-eeEEEE---CCe--ecCCCCCccccC
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMS-TVRFRF---DGQ--AINEQDTPSTLE 85 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~-~~rF~f---dG~--rL~~~~TP~dL~ 85 (126)
.|.++|.-.|| .+.|.|...++-+.|++..|++ .|+... -+-|.| +|. .|..+.+..+.+
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~-----------l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~ 66 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKT-----------IGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQD 66 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHH-----------HTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSC
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHH-----------cCCCCcceeEEEEECCCCceeecccccCHHhhc
Confidence 37788888888 6789999999999999999999 777543 355554 333 245555554443
No 149
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=78.35 E-value=10 Score=25.92 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=45.6
Q ss_pred EEEEEecC---CCcHHHHHHHHHHHhhhhhhhh-hhhccCccceeEEEECCeecC---CCCCccccCCCCCCEEEEEeee
Q psy4523 26 VVQFKIKK---GTPLRKLMNAYCERCVSILSVL-ITLQNLSMSTVRFRFDGQAIN---EQDTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 26 ~v~fkIk~---tt~l~kL~~~y~~~~~~~~~~~-~~~~gl~~~~~rF~fdG~rL~---~~~TP~dL~MeDGD~Idv~~~Q 98 (126)
++.+.+.. ..+++.|++..++++-.. .+. -...|--...+.++.||+.+. .-+| .++|||+|.++...
T Consensus 31 ~~~vel~~~~~~~TV~~Ll~~L~~~~~~~-~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt----~L~dGDeV~iip~v 105 (114)
T 1wgk_A 31 KHQVALPGQEEPWDIRNLLVWIKKNLLKE-RPELFIQGDSVRPGILVLINDADWELLGELDY----QLQDQDSILFISTL 105 (114)
T ss_dssp EEEEEECCCSSCCBHHHHHHHHTTTTCCS-CHHHHCCSSSCCSSEEEEESSSBHHHHCTTTC----BCCSSEEEEEEECS
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHccch-hHhhCccCCcccCCeEEEECCeeeeccCCcCc----CCCCCCEEEEeCCC
Confidence 45566663 368999999988873110 100 001132233477888998654 4444 48999999998887
Q ss_pred cCCCc
Q psy4523 99 TGGFK 103 (126)
Q Consensus 99 ~GG~~ 103 (126)
-||+.
T Consensus 106 aGG~~ 110 (114)
T 1wgk_A 106 HGGSG 110 (114)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 78853
No 150
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=76.48 E-value=14 Score=24.66 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=62.2
Q ss_pred CCCcEEEEEEe-cc-CCE-EEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeE-EEECCeecCCCCCccccCC
Q psy4523 11 TDEHINLKVLG-QD-NNV-VQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVR-FRFDGQAINEQDTPSTLEM 86 (126)
Q Consensus 11 ~~~~I~Ikv~~-~~-g~~-v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~r-F~fdG~rL~~~~TP~dL~M 86 (126)
...+++.|+.- .| ... ..++|-..+||..+.+.-|+. ..+++.+-- ..-||.-|++.||.-..=|
T Consensus 7 ~~~kVtFkItltSdpklpfkvlsVPE~~PftAVlkfaaEe-----------F~vp~~TsAiiT~dGiGInP~QtAGnvFl 75 (92)
T 1j0g_A 7 TMSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEE-----------FKVPAATSAIITNDGIGINPAQTAGNVFL 75 (92)
T ss_dssp CSCEEEEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHH-----------TTCCSSSEEEECTTSCCCCCSSBHHHHHH
T ss_pred CCceEEEEEEEccCCCCCceEEecCccCchHHHHHHHHHH-----------cCCCccceEEEecCCcccChhhccchhhh
Confidence 34678888763 23 233 358899999999999999999 778776544 4447999999999999999
Q ss_pred CCCCEEEEEee-ecCC
Q psy4523 87 EEGDTIEIYQQ-QTGG 101 (126)
Q Consensus 87 eDGD~Idv~~~-Q~GG 101 (126)
+.|..+-+..+ .+|+
T Consensus 76 KhGseLrlIPRDRVG~ 91 (92)
T 1j0g_A 76 KHGSELRIIPRDRVGS 91 (92)
T ss_dssp HTCSEEEEEECCSSCC
T ss_pred hcCceeEecccccccC
Confidence 99999988854 5554
No 151
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=73.15 E-value=4.4 Score=34.59 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=32.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCee
Q psy4523 27 VQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQA 74 (126)
Q Consensus 27 v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~r 74 (126)
..|+|.+++++..|++..++. .|++++.+||+.--.|
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~-----------lg~~~~~~RlW~~~~R 74 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQT-----------MGFPQDQIRLWPMQAR 74 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHH-----------HTSCGGGEEEEEEEEC
T ss_pred ceEEEcCcCCHHHHHHHHHHH-----------hCcCcccEEEEEEEcC
Confidence 479999999999999999999 9999999999975333
No 152
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=72.61 E-value=15 Score=23.46 Aligned_cols=62 Identities=13% Similarity=0.343 Sum_probs=38.9
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
.|.|...+|..+. +.+..+...+- |+-. .++..+.+--.+||+.+..+ | .+++||+|+++
T Consensus 7 ~i~v~tP~G~~~~--lp~GaT~~D~A--~~Ih-----------~~lg~~~v~AkVNG~~v~L~-~----~L~~gd~VeIi 66 (78)
T 3hvz_A 7 EVFVFTPKGDVIS--LPIGSTVIDFA--YAIH-----------SAVGNRMIGAKVDGRIVPID-Y----KVKTGEIIDVL 66 (78)
T ss_dssp EEEEECTTSCEEE--EETTCBHHHHH--HHHC-----------HHHHHTEEEEEETTEEECTT-C----BCCTTCBEEEE
T ss_pred eEEEECCCCCEEE--ecCCCCHHHHH--HHhh-----------hhhhcceEEEEECCEEcCCC-c----ccCCCCEEEEE
Confidence 3566668887544 45655655543 3222 33334456667799888764 3 48999999987
Q ss_pred ee
Q psy4523 96 QQ 97 (126)
Q Consensus 96 ~~ 97 (126)
..
T Consensus 67 t~ 68 (78)
T 3hvz_A 67 TT 68 (78)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 153
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=71.88 E-value=13 Score=24.70 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=42.0
Q ss_pred CCCcEEEEEEeccC----CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE-CCe-ecCCCCCcccc
Q psy4523 11 TDEHINLKVLGQDN----NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF-DGQ-AINEQDTPSTL 84 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g----~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f-dG~-rL~~~~TP~dL 84 (126)
..++|+|+++.-.. ....|+|..+.++..++..-.++ .++ +++ |+| |+. .-+.++|..+|
T Consensus 5 ~~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkr-----------L~l--~al-FlyVNn~f~Ps~d~~~~~L 70 (91)
T 3w1s_C 5 NIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRR-----------LKM--DHV-YCYINNSFAPSPQQNIGEL 70 (91)
T ss_dssp -CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHH-----------HTC--SCC-EEEETTTBCCCTTSBHHHH
T ss_pred CCCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHh-----------hCC--ceE-EEEECCccCCCcccHHHHH
Confidence 45689999987433 33469999999999999999999 666 455 555 654 34556777765
No 154
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=71.17 E-value=20 Score=23.78 Aligned_cols=48 Identities=6% Similarity=0.133 Sum_probs=38.7
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc-ceeEEEEC
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM-STVRFRFD 71 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~-~~~rF~fd 71 (126)
+..|+||+.- .|..+.+++..+.++..|.+..+++ .++.. ..+.+.|-
T Consensus 4 ~~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~-----------~~~~~~~~f~lky~ 52 (89)
T 1vd2_A 4 GSQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDM-----------CSFDNEQLFTMKWI 52 (89)
T ss_dssp SSCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHH-----------TTCCSSCCEEEEEC
T ss_pred CCeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHH-----------hCCCCCCeEEEEEE
Confidence 4568888876 4778899999999999999999999 66654 44777773
No 155
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=70.66 E-value=31 Score=27.29 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=54.6
Q ss_pred cEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE------CCeecCCCCCccccCCC
Q psy4523 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF------DGQAINEQDTPSTLEME 87 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f------dG~rL~~~~TP~dL~Me 87 (126)
.+.|+|.-. +....+.+.+++++..+....++++.. ....+.+..-++. .|.-|..+.|.+.+++.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~-------~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~ 74 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPE-------ALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLR 74 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGG-------GGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCC
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhccc-------ccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCC
Confidence 355666544 555679999999999999998888310 0122456666666 46779999999999999
Q ss_pred CCCEEEEE
Q psy4523 88 EGDTIEIY 95 (126)
Q Consensus 88 DGD~Idv~ 95 (126)
+|+.|+..
T Consensus 75 ~~~~l~~~ 82 (371)
T 3ivf_A 75 NGDTMEYR 82 (371)
T ss_dssp TTCEEEEE
T ss_pred CCceeecc
Confidence 99988776
No 156
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=69.15 E-value=23 Score=23.75 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=53.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeee
Q psy4523 27 VQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 27 v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q 98 (126)
+...|.-.+||..|++....| .|++.+...|+..+..|.++.+.-+-..+-.-.+.+.++.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~R-----------l~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPR-----------LQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHH-----------HCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHH-----------hcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 345667789999999999999 9999999999999888999999999999988887777653
No 157
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=68.98 E-value=21 Score=24.25 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=28.3
Q ss_pred cEEEEEEecc-------CCEEEEEecCCCcHHHHHHHHHHH
Q psy4523 14 HINLKVLGQD-------NNVVQFKIKKGTPLRKLMNAYCER 47 (126)
Q Consensus 14 ~I~Ikv~~~~-------g~~v~fkIk~tt~l~kL~~~y~~~ 47 (126)
.|.|||...+ +..+.+.|.++..|..|.+...++
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~K 45 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSK 45 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHH
Confidence 4888888653 334689999999999999999999
No 158
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=68.15 E-value=9.8 Score=25.25 Aligned_cols=71 Identities=13% Similarity=0.239 Sum_probs=50.9
Q ss_pred CcEEEEEEeccC----CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE-CCee-cCCCCCcccc--
Q psy4523 13 EHINLKVLGQDN----NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF-DGQA-INEQDTPSTL-- 84 (126)
Q Consensus 13 ~~I~Ikv~~~~g----~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f-dG~r-L~~~~TP~dL-- 84 (126)
.+|+|+++.-.. ....|.|..+.++..++..-.++ ..+++++--|+| |+.- -+.++|..+|
T Consensus 4 ~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkr-----------L~l~~~~alFlyVnn~~~P~~d~~~~~Ly~ 72 (91)
T 4gdk_A 4 KKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKF-----------LKLVASEQLFIYVNQSFAPSPDQEVGTLYE 72 (91)
T ss_dssp CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHH-----------TTCCSSSCCEEEETTTBCCCTTCBHHHHHH
T ss_pred ceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHH-----------hCCCCCCeEEEEECCccCCChhhHHHHHHH
Confidence 478999887422 33479999999999999999999 888777666666 5432 3456777665
Q ss_pred --CCCCCCEEEEE
Q psy4523 85 --EMEEGDTIEIY 95 (126)
Q Consensus 85 --~MeDGD~Idv~ 95 (126)
. +||-.+-.+
T Consensus 73 ~~k-~DGfLyv~Y 84 (91)
T 4gdk_A 73 CFG-SDGKLVLHY 84 (91)
T ss_dssp HHC-BTTEEEEEE
T ss_pred HhC-CCCEEEEEE
Confidence 5 666655444
No 159
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=67.74 E-value=14 Score=28.65 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=32.5
Q ss_pred CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHH
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCER 47 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~ 47 (126)
....|.++|.-.||....|.|.+.++-+.|++..|++
T Consensus 14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~ 50 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEH 50 (296)
T ss_dssp ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHH
T ss_pred CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHH
Confidence 4567889998899999999999999999999999999
No 160
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=66.47 E-value=31 Score=24.28 Aligned_cols=73 Identities=15% Similarity=0.266 Sum_probs=53.0
Q ss_pred CCcEEEEEEeccC-------CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEE-ECCe-ecCCCCCcc
Q psy4523 12 DEHINLKVLGQDN-------NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFR-FDGQ-AINEQDTPS 82 (126)
Q Consensus 12 ~~~I~Ikv~~~~g-------~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~-fdG~-rL~~~~TP~ 82 (126)
+++|-|.|.-..+ ....|.|..+.++..++....++ .+++++.--|+ |.+. ....++|..
T Consensus 33 P~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkr-----------L~l~~~~alFl~~vn~~~p~~~~~m~ 101 (130)
T 2zjd_A 33 PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRR-----------LQLNANQAFFLLVNGHSMVSVSTPIS 101 (130)
T ss_dssp TTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHH-----------HTCCTTCCEEEEETTTEECCTTSBHH
T ss_pred CCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHH-----------hCCCCCceEEEEEECCccCCccchHH
Confidence 4678888854333 22479999999999999999999 88988887777 7544 445567777
Q ss_pred cc-----CCCCCCEEEEEe
Q psy4523 83 TL-----EMEEGDTIEIYQ 96 (126)
Q Consensus 83 dL-----~MeDGD~Idv~~ 96 (126)
+| + +||=..-.+-
T Consensus 102 ~lY~~~kd-eDGfLyv~Ys 119 (130)
T 2zjd_A 102 EVYESEKD-EDGFLYMVYA 119 (130)
T ss_dssp HHHHHHCC-TTSCEEEEEE
T ss_pred HHHHHhCC-CCCEEEEEEe
Confidence 77 4 6776555443
No 161
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=65.53 E-value=36 Score=29.23 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=37.7
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc-ceeEEEE
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM-STVRFRF 70 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~-~~~rF~f 70 (126)
+..|.++|.-.|| .+.|.|...++-+.|++..|.+ .|+.. .-+-|.|
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~-----------LgL~e~~~FGL~~ 49 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKT-----------IGLREVWFFGLQY 49 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHH-----------HTCCCGGGEEEEE
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHH-----------cCCCCccceeEEE
Confidence 3478899998888 6789999999999999999999 77743 3355555
No 162
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=64.49 E-value=19 Score=26.15 Aligned_cols=71 Identities=11% Similarity=0.266 Sum_probs=43.0
Q ss_pred EEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCEEEEEeeecCCC
Q psy4523 29 FKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGF 102 (126)
Q Consensus 29 fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG~ 102 (126)
+.+.. .++..|.+....+...+-.......++ ...+.+..||+.+...+- .+.-+.|||+|.++.--.||.
T Consensus 18 ~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l-~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG~ 88 (168)
T 1v8c_A 18 LELPG-ATVGEVLENLVRAYPALKEELFEGEGL-AERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGGG 88 (168)
T ss_dssp EECCC-SBHHHHHHHHHHHCGGGHHHHEETTEE-CTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSEE
T ss_pred EEECC-CcHHHHHHHHHhhChhhhhhhhccccc-CCcEEEEECCEECCCcCC-CccCCCCCCEEEEECcccccc
Confidence 34444 899999998877621000000000111 345789999998876322 233589999999988766764
No 163
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=60.38 E-value=53 Score=27.39 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=52.9
Q ss_pred cEEEEEEec-cCCEEEEEecCCCcHHHHHHHHHHH----h---h----h-hhhhhhhhccCccceeEEEE-C-CeecCCC
Q psy4523 14 HINLKVLGQ-DNNVVQFKIKKGTPLRKLMNAYCER----C---V----S-ILSVLITLQNLSMSTVRFRF-D-GQAINEQ 78 (126)
Q Consensus 14 ~I~Ikv~~~-~g~~v~fkIk~tt~l~kL~~~y~~~----~---~----~-~~~~~~~~~gl~~~~~rF~f-d-G~rL~~~ 78 (126)
.|+++|... ......+.+++.++|-.+|++=.+. | + - .++|+....+ ...+-.++ + |+++.
T Consensus 318 ~VtytV~~~~~~~~~~Vtv~~gssll~vLk~A~e~~~F~F~~~es~~G~fItSInG~~~~--~~~YW~l~~~p~~pl~-- 393 (414)
T 2bb6_A 318 DVLLKVSGISPSYRHSVSVPAGSSLEDILKNAQEHGRFRFRTQASLSGPFLTSVLGRKAG--EREFWQVLRDPDTPLQ-- 393 (414)
T ss_dssp EEEEEEESSSSCEEEEEEEETTCCHHHHHHHHHHSSSCCEEEECCTTSCEEEEETTEECC--TTEEEEEEETTTEECS--
T ss_pred EEEEEEeeCCCccceEEEecCCCCHHHHHHHHHhccCCceEeeecCCCceEEEECCCccC--CCceEEEEECCCCccc--
Confidence 455666631 2344579999999999998877664 1 1 1 1224555555 34444444 5 67764
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
.=.+++..+|||.|++....
T Consensus 394 ~Gv~~y~~~~ge~I~f~~~~ 413 (414)
T 2bb6_A 394 QGIADYRPKDGETIELRLVG 413 (414)
T ss_dssp SCTTTCCCCTTCEEEEEEEE
T ss_pred ccccceecCCCCEEEEEeee
Confidence 66788999999999998753
No 164
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=58.63 E-value=37 Score=22.55 Aligned_cols=70 Identities=6% Similarity=0.179 Sum_probs=47.0
Q ss_pred CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEE-E-CC--eecCCCCCccccCC
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFR-F-DG--QAINEQDTPSTLEM 86 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~-f-dG--~rL~~~~TP~dL~M 86 (126)
....|.+.+ .+++...+.|++..+++....+-.++ .|+.+.....+ . +| .+|.=+.-... +
T Consensus 6 ~~~~irvhL--Pn~QrT~V~VrpG~tlrdaL~KaLk~-----------R~L~pe~C~Vy~~~~~~~~~IdWdtDi~~--L 70 (86)
T 1wxm_A 6 SGGTVKVYL--PNKQRTVVTVRDGMSVYDSLDKALKV-----------RGLNQDCCVVYRLIKGRKTVTAWDTAIAP--L 70 (86)
T ss_dssp CSSEEEEEC--SSSCEEEEECCSSCBSHHHHHHHHHT-----------TTCCSSSEEEEEESSSCEEEECSSSBSTT--C
T ss_pred ccceEEEEC--CCCCeEEEEecCCcCHHHHHHHHHHH-----------cCCCHHHeEEEEcCCCCccccchhHhhhh--c
Confidence 344555555 77888899999999999988888888 99988764444 2 56 44443333333 2
Q ss_pred CCCCEEEEEe
Q psy4523 87 EEGDTIEIYQ 96 (126)
Q Consensus 87 eDGD~Idv~~ 96 (126)
.|++|.|.+
T Consensus 71 -~~eEL~Ve~ 79 (86)
T 1wxm_A 71 -DGEELIVEV 79 (86)
T ss_dssp -SSCEEEEEE
T ss_pred -cCcEEEEEE
Confidence 367666653
No 165
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=56.32 E-value=26 Score=24.00 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=50.4
Q ss_pred CCcEEEEEEeccC------CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE-CCeecCCCCCcccc
Q psy4523 12 DEHINLKVLGQDN------NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF-DGQAINEQDTPSTL 84 (126)
Q Consensus 12 ~~~I~Ikv~~~~g------~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f-dG~rL~~~~TP~dL 84 (126)
+++|-|.|.-..+ ....|.|..+.++..++..-.++ .++++++--|+| ++.....++|..+|
T Consensus 26 P~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~-----------l~l~~~~alfl~vn~~~p~~~~~m~~L 94 (117)
T 1eo6_A 26 PDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKR-----------IQLPSEKAIFLFVDKTVPQSSLTMGQL 94 (117)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHH-----------HTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHh-----------hcCCCCCcEEEEECCEecCccchHHHH
Confidence 4678888875433 23468999999999999999999 778777655666 56555556677766
Q ss_pred C----CCCCCEEEEE
Q psy4523 85 E----MEEGDTIEIY 95 (126)
Q Consensus 85 ~----MeDGD~Idv~ 95 (126)
- =+||=..-.+
T Consensus 95 Y~~~kd~DGfLyi~Y 109 (117)
T 1eo6_A 95 YEKEKDEDGFLYVAY 109 (117)
T ss_dssp HHHHCCTTSCEEEEE
T ss_pred HHHhCCCCCEEEEEE
Confidence 1 2566544443
No 166
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=56.20 E-value=72 Score=25.09 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=39.5
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc-ceeEEEE
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM-STVRFRF 70 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~-~~~rF~f 70 (126)
..+.++|.-.||....|.|...++-+.|++..|++ .|+.. .-+.+.+
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~-----------l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICAR-----------IGITNHDEYSLVR 131 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHH-----------TTCSCGGGEEEEC
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHH-----------cCCCCccccEEEE
Confidence 46888899899999999999999999999999999 77753 3455555
No 167
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=54.56 E-value=49 Score=22.64 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=44.1
Q ss_pred CCCCcEEEEEEeccCCEEEEEec--CCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCC
Q psy4523 10 STDEHINLKVLGQDNNVVQFKIK--KGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEME 87 (126)
Q Consensus 10 ~~~~~I~Ikv~~~~g~~v~fkIk--~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~Me 87 (126)
=+++.|.|+++.++|..+--.|. ..-.|+.+.++..+. ++.. .-|+-+++=|
T Consensus 10 M~a~~lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~v-------------mP~a-------------T~TAFeYEDE 63 (106)
T 2npt_A 10 MENQVLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQV-------------LPEA-------------TTTAFEYEDE 63 (106)
T ss_dssp C--CCEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHH-------------STTS-------------CCSEEEEECT
T ss_pred cccCceEEEEECCCCCccccccCCcccccHHHHHHHHHHh-------------Cccc-------------eeeeeeeccc
Confidence 35678999999999998988888 677888999888887 3222 3455566668
Q ss_pred CCCEEEEE
Q psy4523 88 EGDTIEIY 95 (126)
Q Consensus 88 DGD~Idv~ 95 (126)
+||.|.|.
T Consensus 64 ~gDRITVR 71 (106)
T 2npt_A 64 DGDRITVR 71 (106)
T ss_dssp TSCEEEEC
T ss_pred cCCeeEEc
Confidence 99999886
No 168
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=53.06 E-value=6 Score=23.78 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=20.3
Q ss_pred EECCeecCCCCCccccCCCCCCEEEEEee
Q psy4523 69 RFDGQAINEQDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 69 ~fdG~rL~~~~TP~dL~MeDGD~Idv~~~ 97 (126)
.|+...=...+.+.+|.++-||+|.|.-.
T Consensus 12 ~y~~~~~~~~~~~~eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 12 EYYGIPPPPGAFGPFLRLNPGDIVELTKA 40 (70)
T ss_dssp CBSSSSCCGGGCSCBCCBCTTCEEEEEEC
T ss_pred EEEecCCCCCCCCCcCCcCCCCEEEEEeC
Confidence 34443333344577999999999999876
No 169
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=52.87 E-value=36 Score=22.94 Aligned_cols=62 Identities=11% Similarity=0.114 Sum_probs=45.1
Q ss_pred CCcEEEEEEeccCC------EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE-CCeecCCCCCcccc
Q psy4523 12 DEHINLKVLGQDNN------VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF-DGQAINEQDTPSTL 84 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~------~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f-dG~rL~~~~TP~dL 84 (126)
+++|-|.|.-..+. ...|.|..+.++..++..-.++ .++++++--|+| +|.....++|..+|
T Consensus 25 p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~-----------l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 25 PDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKR-----------IHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp TTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHH-----------TTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHH-----------hcCCCCCcEEEEECCEecCccChHHHH
Confidence 46788888754322 2468999999999999999999 778777655666 56555556677666
No 170
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=51.85 E-value=42 Score=23.12 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=49.0
Q ss_pred CCcEEEEEEeccC------CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE-CCeecCCCCCcccc
Q psy4523 12 DEHINLKVLGQDN------NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF-DGQAINEQDTPSTL 84 (126)
Q Consensus 12 ~~~I~Ikv~~~~g------~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f-dG~rL~~~~TP~dL 84 (126)
.++|-|.|.-..+ ....|.|..+.++..++....++ ..+++++--|+| |+.....++|..+|
T Consensus 28 P~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkr-----------l~l~~~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 28 KNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKR-----------IMLPPEKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp SSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHH-----------TTCCTTCCEEEEBTTBCCCTTSBHHHH
T ss_pred CCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHH-----------hCcCCCccEEEEECCccCCccchHHHH
Confidence 3566666654332 22379999999999999999999 888887766666 66555556666655
Q ss_pred C----CCCCCEEEEE
Q psy4523 85 E----MEEGDTIEIY 95 (126)
Q Consensus 85 ~----MeDGD~Idv~ 95 (126)
- =+||=.+-.+
T Consensus 97 Y~~~kdeDGfLyv~Y 111 (118)
T 3rui_B 97 YQEHKDKDGFLYVTY 111 (118)
T ss_dssp HHHHCCTTSCEEEEE
T ss_pred HHHcCCCCCeEEEEE
Confidence 1 2555544433
No 171
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=50.59 E-value=14 Score=21.53 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=16.1
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|...
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~ 33 (62)
T 2fpe_A 15 RHEDELELEVDDPLLVELQ 33 (62)
T ss_dssp SSTTBCCBCTTCEEEEEEE
T ss_pred cCcCcCcCCCCCEEEEEEe
Confidence 5678999999999999744
No 172
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=49.66 E-value=57 Score=22.03 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=45.8
Q ss_pred EEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEE-E-CC--eecCCCCCccccCCCCCCE
Q psy4523 16 NLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFR-F-DG--QAINEQDTPSTLEMEEGDT 91 (126)
Q Consensus 16 ~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~-f-dG--~rL~~~~TP~dL~MeDGD~ 91 (126)
.|++.=.+++...+.|++.-+++....+-.++ .|+.++....+ . +| .+|+=+.-...|. |++
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~-----------R~L~pe~C~Vy~~~~~~~~~IdWdtDi~~L~---~eE 84 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMM-----------RGLIPECCAVYRIQDGEKKPIGWDTDISWLT---GEE 84 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHH-----------HTCCGGGEEEEEEETTEEEEECTTSBGGGGT---TCE
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHH-----------cCCCHHHcEEEEcCCCCccccchhHhhhhcc---CcE
Confidence 44444477777889999999999988888888 89988754443 2 57 5555444444433 676
Q ss_pred EEEEe
Q psy4523 92 IEIYQ 96 (126)
Q Consensus 92 Idv~~ 96 (126)
|.|-+
T Consensus 85 L~Ve~ 89 (95)
T 2l05_A 85 LHVEV 89 (95)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66653
No 173
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=48.35 E-value=18 Score=22.01 Aligned_cols=21 Identities=19% Similarity=0.550 Sum_probs=17.3
Q ss_pred CCCccccCCCCCCEEEEEeee
Q psy4523 78 QDTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~~~Q 98 (126)
.+.+.+|.++.||+|.|.-..
T Consensus 17 a~~~~ELs~~~Gd~i~v~~~~ 37 (65)
T 2lj0_A 17 PQNDDELELRDGDIVDVMEKC 37 (65)
T ss_dssp CSSTTBCCBCTTCEEEEEEEC
T ss_pred CCCcCCcCCCCCCEEEEeEeC
Confidence 357889999999999987553
No 174
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=47.21 E-value=82 Score=26.15 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=48.3
Q ss_pred CEEEEEecCCCcHHHHHHHHHHH-----hh---h-----hhhhhhhhccCccceeEEEE-CCeecCCCCCccccCCCCCC
Q psy4523 25 NVVQFKIKKGTPLRKLMNAYCER-----CV---S-----ILSVLITLQNLSMSTVRFRF-DGQAINEQDTPSTLEMEEGD 90 (126)
Q Consensus 25 ~~v~fkIk~tt~l~kL~~~y~~~-----~~---~-----~~~~~~~~~gl~~~~~rF~f-dG~rL~~~~TP~dL~MeDGD 90 (126)
....+.+++.+.|-.+|+.=.+. |+ + .++|+....+-....+-.++ +|.++. +=.+++..+|||
T Consensus 313 ~~~~Vtv~~gssll~vLk~a~e~n~~F~F~~~e~~~G~fItSInG~~~~~~~~~YW~l~~~g~~~~--~G~~~y~~~~gd 390 (399)
T 2pmv_A 313 ETINVSVKSGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVSSINNIAENVNHKTYWQFLSGVTPLN--EGVADYIPFNHE 390 (399)
T ss_dssp CCEEEESSSCSCHHHHHHHHHHSCCSCCEEEEEETTEEEEEEESSCBCCGGGTEEEEEEETTEECS--SCTTTCCCCTTC
T ss_pred cceEEEecCCCCHHHHHHHHHHhCcCCceEEeecCCCceEEeECCCccCcCCCeeEEEEECCeecc--cchhheecCCCC
Confidence 33579999999999999877666 21 1 11244444443344444444 677765 477899999999
Q ss_pred EEEEEeee
Q psy4523 91 TIEIYQQQ 98 (126)
Q Consensus 91 ~Idv~~~Q 98 (126)
.|.+....
T Consensus 391 ~I~f~~~~ 398 (399)
T 2pmv_A 391 HITANFTQ 398 (399)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEee
Confidence 99998753
No 175
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=46.62 E-value=19 Score=21.14 Aligned_cols=21 Identities=10% Similarity=0.215 Sum_probs=17.5
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
..+.+|.++-||+|.|.-...
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~ 38 (65)
T 2j05_A 18 PDTDEISFLKGDMFIVHNELE 38 (65)
T ss_dssp TTSSBCCBCTTCEEEEEEECT
T ss_pred CCCCcCcCCCCCEEEEeEecC
Confidence 568899999999999986543
No 176
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=46.48 E-value=22 Score=20.19 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=17.6
Q ss_pred CCCccccCCCCCCEEEEEeee
Q psy4523 78 QDTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~~~Q 98 (126)
...+.+|.++-||+|.|.-..
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~~~ 32 (58)
T 1zuy_A 12 SGSPSELPLKKGDVIYITREE 32 (58)
T ss_dssp CSCTTBCCBCTTCEEEEEEEC
T ss_pred CCCCCcCCCCCCCEEEEEEec
Confidence 357889999999999998764
No 177
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=46.12 E-value=21 Score=20.46 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=17.6
Q ss_pred CCccccCCCCCCEEEEEeeecC
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQTG 100 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~G 100 (126)
+.+.+|.++-||+|.|.-+..+
T Consensus 12 ~~~~eLs~~~Gd~i~v~~~~~~ 33 (58)
T 1jo8_A 12 AEDNELTFVENDKIINIEFVDD 33 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECCSS
T ss_pred CCCCCcccCCCCEEEEEEecCC
Confidence 4578999999999999876433
No 178
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=44.63 E-value=35 Score=29.87 Aligned_cols=60 Identities=10% Similarity=0.176 Sum_probs=43.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhcc--Cccce--------eEEEECCe--------ecCCCCCccccCCC
Q psy4523 26 VVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN--LSMST--------VRFRFDGQ--------AINEQDTPSTLEME 87 (126)
Q Consensus 26 ~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~g--l~~~~--------~rF~fdG~--------rL~~~~TP~dL~Me 87 (126)
...+.+..+.+|+.+.+.+|++ .. +.... .+++|+.. +-+-+.|..+|+++
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~ 781 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNS-----------ASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLV 781 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHC-----------TTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCC
T ss_pred eEEEEECCcChHHHHHHHHHhh-----------hccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCC
Confidence 4678888888999999999997 43 32222 45677632 12346889999999
Q ss_pred CCCEEEEEe
Q psy4523 88 EGDTIEIYQ 96 (126)
Q Consensus 88 DGD~Idv~~ 96 (126)
+|++|.|.-
T Consensus 782 ~~~~~~~~~ 790 (805)
T 2nvu_B 782 DGQELAVAD 790 (805)
T ss_dssp TTCEEEEEC
T ss_pred CCCEEEEEc
Confidence 999998864
No 179
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=44.18 E-value=80 Score=22.13 Aligned_cols=68 Identities=3% Similarity=0.118 Sum_probs=53.2
Q ss_pred CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCC--CCCccccCCCCCCEEEEE
Q psy4523 25 NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINE--QDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 25 ~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~--~~TP~dL~MeDGD~Idv~ 95 (126)
...-|.+.+.+||+.|.+....-. ...-+.+..++.+.+..+.+|+...+ +.|.++.|+.--+.|.+.
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~---~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPA---TAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHH---TTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred CceeecCCCCCCHHHHHHHhcchh---hhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 456799999999999887554441 11235567788889999999999986 478899999988988877
No 180
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=43.94 E-value=22 Score=20.35 Aligned_cols=21 Identities=14% Similarity=0.468 Sum_probs=17.4
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-+..
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~~ 34 (58)
T 1zx6_A 14 QQDGDLGLKPGDKVQLLEKLS 34 (58)
T ss_dssp CSTTBCCBCTTCEEEEEEECS
T ss_pred CCCCCccCCCCCEEEEEEecC
Confidence 467899999999999986643
No 181
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=43.31 E-value=58 Score=20.25 Aligned_cols=78 Identities=18% Similarity=0.150 Sum_probs=40.3
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCCCCCE
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDT 91 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~ 91 (126)
...|.|.+ .+|....|.--. +++..+...+. .++....+--..||+.+.-+ .-+++|+.
T Consensus 9 ~~~i~I~l--pdG~~~~~~~~~-~T~~dia~~i~-------------~~l~~~~vaakvNg~l~dL~-----~~l~~d~~ 67 (88)
T 1wwt_A 9 SKPIKVTL--PDGKQVDAESWK-TTPYQIACGIS-------------QGLADNTVIAKVNNVVWDLD-----RPLEEDCT 67 (88)
T ss_dssp CCEEEEEC--TTSCEEEEETTT-CCHHHHHHHSS-------------TTTGGGCCCEEESSSEECSS-----SCCCSSEE
T ss_pred CCCEEEEE--CCCCEEEcccCC-CCHHHHHHHhh-------------hccccceEEEEECCEEECCC-----cCcCCCCE
Confidence 34455555 578776665312 44444433331 23434445456788766532 24567888
Q ss_pred EEEEeeecCCCcCCCceeeeccC
Q psy4523 92 IEIYQQQTGGFKQTPQLQIWHTE 114 (126)
Q Consensus 92 Idv~~~Q~GG~~~~~~~~~~~~~ 114 (126)
|++.--..-- ...++||+-
T Consensus 68 ve~vt~~~~e----g~~i~rHS~ 86 (88)
T 1wwt_A 68 LELLKFEDEE----AQAVYSGPS 86 (88)
T ss_dssp EEECSSCCSC----CSCSCCCCS
T ss_pred EEEEeCCCHH----HhhheeccC
Confidence 8876432221 133477763
No 182
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=42.96 E-value=21 Score=21.01 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=17.1
Q ss_pred CccccCCCCCCEEEEEeeecC
Q psy4523 80 TPSTLEMEEGDTIEIYQQQTG 100 (126)
Q Consensus 80 TP~dL~MeDGD~Idv~~~Q~G 100 (126)
++.+|.++-||+|.|.-+..+
T Consensus 2 ~~~eLs~~~Gd~i~v~~~~~~ 22 (63)
T 1tuc_A 2 GPREVTMKKGDILTLLNSTNK 22 (63)
T ss_dssp CCCCCCBCTTCEEEEEECCSS
T ss_pred CccccCCCCCCEEEEEEecCC
Confidence 678999999999999876433
No 183
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=42.83 E-value=25 Score=20.03 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~ 32 (58)
T 1uti_A 13 LEEDELGFRSGEVVEVLDSS 32 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCcCCCCCCCCCEEEEEEEC
Confidence 45789999999999998763
No 184
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=42.73 E-value=12 Score=27.11 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=15.1
Q ss_pred ccCCCCCCEEEEEeeecC
Q psy4523 83 TLEMEEGDTIEIYQQQTG 100 (126)
Q Consensus 83 dL~MeDGD~Idv~~~Q~G 100 (126)
.|+++|||.|.+.+....
T Consensus 119 ~L~LkDGD~V~I~v~~~~ 136 (146)
T 2oyn_A 119 QFNLKDGDVIKILIKGDK 136 (146)
T ss_dssp HHTCCTTCEEEEEEECCT
T ss_pred hcCCCCCCEEEEEEeCCC
Confidence 799999999999887443
No 185
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=42.55 E-value=25 Score=20.06 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=17.3
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-+..
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~ 33 (58)
T 2bz8_A 13 QHDDELTISVGEIITNIRKED 33 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECCT
T ss_pred CCcCEeeECCCCEEEEEEeCC
Confidence 467899999999999987643
No 186
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A
Probab=42.37 E-value=58 Score=25.13 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=47.0
Q ss_pred CcEEEEEEeccCCEEEEEecCC-----------------------------CcHHHHHHHHHHHhhhhhh---hhhh-h-
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKG-----------------------------TPLRKLMNAYCERCVSILS---VLIT-L- 58 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~t-----------------------------t~l~kL~~~y~~~~~~~~~---~~~~-~- 58 (126)
....|.|+. ++...||+|.+. ..|..|.+.|.......+. |... .
T Consensus 45 g~y~LSv~~-~~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~L~~P~~~~~~ 123 (304)
T 2eyz_A 45 GDYVLSVSE-NSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQ 123 (304)
T ss_dssp SCCEEEECS-SSSCEEEECCCCSSCCSSCCCCCCCSSSSSCCCCCBTTBCCSCHHHHHTTTTTSCCSSSSSCCBCCSCSC
T ss_pred CCEEEEEEE-CCEEEEEEEeeccccccccccccccccccCCCeEEeCCcEECCHHHHHHHhhhCccccceeccccccccc
Confidence 346777765 467778999872 5678888888876321111 1000 0
Q ss_pred -cc-C----ccceeEEEECCeecCCCCCccccCCCCCCEEEEEeee
Q psy4523 59 -QN-L----SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 59 -~g-l----~~~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q 98 (126)
.| . ....++-+||= ....+.+|.++-||+|.|.-..
T Consensus 124 ~~g~~~~~~~~~~~~alydy----~~~~~~eLsf~~Gd~i~v~~~~ 165 (304)
T 2eyz_A 124 GSGVILRQEEAEYVRALFDF----NGNDEEDLPFKKGDILRIRDKP 165 (304)
T ss_dssp CSCCCCCCCCCCEEEECSCC----CCSCSSSCCCCTTCEEEEEECC
T ss_pred cccccCCcccceeEEEEeee----cCCCCCcCcccCCCEEEEEEec
Confidence 00 0 01123334442 2346778999999999998654
No 187
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=41.97 E-value=1e+02 Score=25.66 Aligned_cols=48 Identities=6% Similarity=0.058 Sum_probs=40.2
Q ss_pred CCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc--ceeEEEE
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM--STVRFRF 70 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~--~~~rF~f 70 (126)
...+.++|.-.||....|.|...++-+.|++..|++ .|+.. +-+.+.+
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~-----------lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRG-----------LAMEDSRNMFALFE 263 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHH-----------TTCTTCCSEEEEEE
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHH-----------cCCCCCCCceEEEE
Confidence 346888888899999999999999999999999999 88863 4555554
No 188
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=41.78 E-value=22 Score=21.70 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 23 ~~~~eLs~~~Gd~i~v~~~~ 42 (73)
T 2ebp_A 23 YDTDSLKLKKGDIIDIISKP 42 (73)
T ss_dssp TCCSBCCBCSSCEEEEEECC
T ss_pred CCCCccCCCCCCEEEEEEeC
Confidence 46789999999999998764
No 189
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=41.43 E-value=87 Score=27.28 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=39.5
Q ss_pred CcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCcc-ceeEEEE
Q psy4523 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM-STVRFRF 70 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~-~~~rF~f 70 (126)
..|.++|.-.||....|.|...++-+.|++..|++ .|+.. .-+.+.+
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~-----------LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADK-----------ISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHH-----------TTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHH-----------cCCcccccceeEE
Confidence 47889999899999999999999999999999999 77743 3455554
No 190
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=41.09 E-value=29 Score=20.01 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 16 ~~~~eLs~~~Gd~i~v~~~~ 35 (60)
T 1w70_A 16 NSKLELNFKAGDVIFLLSRI 35 (60)
T ss_dssp SSTTBCCBCTTCEEEEEEEC
T ss_pred CCCCCccCCCCCEEEEEEeC
Confidence 46778999999999998764
No 191
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=40.78 E-value=26 Score=19.89 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-+..
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~ 33 (59)
T 1yn8_A 13 ENDNELRLAEGDIVFISYKHG 33 (59)
T ss_dssp CSTTBCCBCTTCEEEEEEEEE
T ss_pred CCCCCcCCCCCCEEEEEEcCC
Confidence 467899999999999876543
No 192
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=40.75 E-value=24 Score=20.54 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=17.1
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-+..
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~ 37 (62)
T 1uj0_A 17 VEDNELTFKHGELITVLDDSD 37 (62)
T ss_dssp CSTTBCCBCTTCEEEEEECCS
T ss_pred CCcCCcCCCCCCEEEEEEeCC
Confidence 456789999999999987643
No 193
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=40.68 E-value=24 Score=21.11 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|....
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (71)
T 2fpf_A 18 RHEDELELEVDDPLLVELQA 37 (71)
T ss_dssp SSTTBCCBCTTCEEEEEEEC
T ss_pred cCCCcccCcCCcEEEEeEec
Confidence 55789999999999997543
No 194
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=40.59 E-value=29 Score=20.51 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 19 ~~~~eLsf~~Gd~i~v~~~~ 38 (68)
T 1tg0_A 19 DYEDDLNFEKDQEIIVTSVE 38 (68)
T ss_dssp SCTTBCCBCTTCEEEEEEEC
T ss_pred CCcCCCCCCCCCEEEEEEec
Confidence 56789999999999998653
No 195
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=40.57 E-value=27 Score=20.33 Aligned_cols=20 Identities=20% Similarity=0.581 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 33 ~~~~eLsf~~Gd~i~v~~~~ 52 (62)
T 1g2b_A 33 KSPREVTMKKGDILTLLNST 52 (62)
T ss_dssp SSTTBCCBCTTCEEEEEECC
T ss_pred CCCCccCCCCCCEEEEEEec
Confidence 46779999999999998764
No 196
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=40.42 E-value=29 Score=19.82 Aligned_cols=21 Identities=19% Similarity=0.416 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-+..
T Consensus 16 ~~~~eLs~~~Gd~i~v~~~~~ 36 (59)
T 2g6f_X 16 TNEDELSFSKGDVIHVTRVEE 36 (59)
T ss_dssp SSTTBCCBCTTCEEEEEEECT
T ss_pred CCcCCcCCCCCCEEEEEEecC
Confidence 457899999999999886543
No 197
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=39.97 E-value=28 Score=20.71 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~ 32 (65)
T 2nwm_A 13 QSPKELTLQKGDIVYIHKEV 32 (65)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCcCccCCcCCCEEEEEEec
Confidence 46789999999999997653
No 198
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}
Probab=39.72 E-value=91 Score=21.69 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
..+.+|.++-||+|.|.-+.
T Consensus 130 ~~~~eLsf~~Gd~i~v~~~~ 149 (174)
T 3qwx_X 130 ERETDLPFEQGERLEILSKT 149 (174)
T ss_dssp SSTTBCCBCTTCEEEEEECC
T ss_pred CCCCccccccCCEEEEEEcc
Confidence 46789999999999997654
No 199
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=39.48 E-value=39 Score=23.38 Aligned_cols=73 Identities=11% Similarity=0.195 Sum_probs=49.9
Q ss_pred CCcEEEEEEeccC------CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE-CCeecCCCCCcccc
Q psy4523 12 DEHINLKVLGQDN------NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF-DGQAINEQDTPSTL 84 (126)
Q Consensus 12 ~~~I~Ikv~~~~g------~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f-dG~rL~~~~TP~dL 84 (126)
.++|-|.|.-..+ ....|.|..+.++..++....++ ..++++.--|+| |+.....++|..+|
T Consensus 29 P~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkr-----------l~l~~~~alFl~Vn~~~p~~~~~m~~l 97 (119)
T 3h9d_A 29 PDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKR-----------VQLEAESALFVYTNDTVLPSSAQMADI 97 (119)
T ss_dssp TTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHH-----------HTCCTTSCCEEEETTEECCTTSBHHHH
T ss_pred CCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHH-----------hCCCccceEEEEECCcCCCccchHHHH
Confidence 3566676654332 22369999999999999999999 888877655555 77766667777666
Q ss_pred C----CCCCCEEEEE
Q psy4523 85 E----MEEGDTIEIY 95 (126)
Q Consensus 85 ~----MeDGD~Idv~ 95 (126)
- =+||=.+-.+
T Consensus 98 Y~~~kd~DGfLyv~Y 112 (119)
T 3h9d_A 98 YSKYKDEDGFLYMKY 112 (119)
T ss_dssp HHHHCCTTSCEEEEE
T ss_pred HHHcCCCCCeEEEEE
Confidence 1 2455544333
No 200
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=39.36 E-value=30 Score=19.57 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~ 33 (58)
T 2vwf_A 14 QEDGELGFRRGDFIHVMDNS 33 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCcCCcCCCCCCEEEEEEcC
Confidence 46779999999999998764
No 201
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=39.35 E-value=30 Score=19.94 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (61)
T 1y0m_A 15 QREDELTFTKSAIIQNVEKQ 34 (61)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCCCCcCCcCCCEEEEEEec
Confidence 56779999999999998763
No 202
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=38.55 E-value=29 Score=20.01 Aligned_cols=22 Identities=14% Similarity=0.471 Sum_probs=17.8
Q ss_pred CCccccCCCCCCEEEEEeeecC
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQTG 100 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~G 100 (126)
+.+.+|.++-||+|.|.-+..+
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~~ 39 (60)
T 2gnc_A 18 RSARELSFKKGASLLLYHRASE 39 (60)
T ss_dssp SSTTBCCBCTTCEEEEEEEEET
T ss_pred CCcCCcCCCCCCEEEEEEecCC
Confidence 4678999999999999876443
No 203
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=38.37 E-value=33 Score=19.77 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=17.7
Q ss_pred CCccccCCCCCCEEEEEeeecC
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQTG 100 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~G 100 (126)
..+.+|.++-||+|.|.-...+
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~~ 38 (62)
T 1k4u_S 17 TQPEDLEFQEGDIILVLSKVNE 38 (62)
T ss_dssp CSSSBCCBCSSCEEEEEEESSS
T ss_pred CCCCCccCCCCCEEEEEEeCCC
Confidence 4677999999999999876433
No 204
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=37.76 E-value=33 Score=20.55 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=17.7
Q ss_pred CCccccCCCCCCEEEEEeeecC
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQTG 100 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~G 100 (126)
+.+.+|.++-||+|.|.-+..+
T Consensus 15 ~~~~eLsf~~Gd~i~v~~~~~~ 36 (68)
T 2ew3_A 15 ENQGELGFKEGDIITLTNQIDE 36 (68)
T ss_dssp CSTTBCCBCTTCEEEEEEESSS
T ss_pred CCCCccCCCCCCEEEEEEecCC
Confidence 4678999999999999876433
No 205
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=37.70 E-value=32 Score=19.46 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
..+.+|.++-||+|.|.-+.
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~ 32 (57)
T 1cka_A 13 NDEEDLPFKKGDILRIRDKP 32 (57)
T ss_dssp SSTTBCCBCTTCEEEEEECS
T ss_pred CCCCCCCCCCCCEEEEEEec
Confidence 45678999999999998764
No 206
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=37.60 E-value=34 Score=19.80 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-+
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 13 VHDDELTIRVGEIIRNVKK 31 (62)
T ss_dssp SSTTBCCBCTTCEEEEEEE
T ss_pred CCcCCcCCcCCCEEEEEEe
Confidence 4677999999999999876
No 207
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=37.13 E-value=25 Score=20.85 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=16.7
Q ss_pred CccccCCCCCCEEEEEeeec
Q psy4523 80 TPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 80 TP~dL~MeDGD~Idv~~~Q~ 99 (126)
.+.+|.++-||+|.|.-...
T Consensus 16 ~~~eLsf~~Gd~i~v~~~~~ 35 (67)
T 2bzy_A 16 DKTALALEVGDIVKVTRMNI 35 (67)
T ss_dssp CTTBCCBCTTCEEEEEEECS
T ss_pred CCCccccCCCCEEEEEEecC
Confidence 67899999999999886643
No 208
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=37.12 E-value=35 Score=19.52 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~ 36 (60)
T 2xmf_A 17 QDTDELSFNANDIIDIIKED 36 (60)
T ss_dssp SSTTBCCBCTTCEEEEEEEC
T ss_pred CCcCCcCCCCCCEEEEEEec
Confidence 45689999999999998764
No 209
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=37.03 E-value=33 Score=19.40 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~ 33 (58)
T 1sem_A 14 QESGELAFKRGDVITLINKD 33 (58)
T ss_dssp SSTTBCCBCTTCEEEEEECS
T ss_pred CCCCCcCCCCCCEEEEEEec
Confidence 45789999999999998763
No 210
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=36.74 E-value=34 Score=19.44 Aligned_cols=19 Identities=47% Similarity=0.602 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
..+.+|.++-||+|.|.-.
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~ 33 (58)
T 1zlm_A 15 RTPDELYFEEGDIIYITDM 33 (58)
T ss_dssp SSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCccCCCCCEEEEEEe
Confidence 4578999999999999876
No 211
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.05 E-value=33 Score=20.28 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (68)
T 2dl4_A 19 QENEDLEMRPGDIITLLEDS 38 (68)
T ss_dssp SSTTBCCCCTTCEEEEEECC
T ss_pred CCcCCcCCCCCCEEEEEEeC
Confidence 46789999999999998754
No 212
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=35.84 E-value=37 Score=19.20 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (58)
T 2drm_A 15 QTGDELTFKEGDTIIVHQKD 34 (58)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCcCCcCCCCCCEEEEEEec
Confidence 45788999999999988663
No 213
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=35.73 E-value=30 Score=20.32 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=17.1
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-+..
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~ 39 (68)
T 2dl3_A 19 QTLKELPLQKGDIVYIYKQID 39 (68)
T ss_dssp SSTTBCCBCTTCEEEEEECCS
T ss_pred CCcCCccCCCCCEEEEeEecC
Confidence 467899999999999986533
No 214
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=35.65 E-value=40 Score=18.89 Aligned_cols=20 Identities=10% Similarity=0.336 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~ 32 (58)
T 4e6r_A 13 EREDELSLVXGSRVTVMEXC 32 (58)
T ss_dssp CSTTBCCBCTTCEEEEEEEC
T ss_pred CCCCEeeEeCCCEEEEeEcC
Confidence 46788999999999998654
No 215
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=35.42 E-value=39 Score=19.93 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=18.0
Q ss_pred CCCccccCCCCCCEEEEEeeec
Q psy4523 78 QDTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
...+.+|.++-||+|.|.-+..
T Consensus 14 ~~~~~eLs~~~Gd~i~v~~~~~ 35 (69)
T 1ruw_A 14 SGSSSELPLKKGDIVFISRDEP 35 (69)
T ss_dssp CSCTTBCCBCTTCEEEEEEECT
T ss_pred CCCCCcccCCCCCEEEEEEecC
Confidence 3578899999999999987643
No 216
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=35.27 E-value=39 Score=19.80 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (67)
T 2o9s_A 18 DTQVEMSFRKGERITLLRQV 37 (67)
T ss_dssp SSTTBCCBCTTCEEEEEEEC
T ss_pred CCcCccCCCCCCEEEEEEec
Confidence 46789999999999998753
No 217
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=35.27 E-value=38 Score=21.67 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=25.6
Q ss_pred CCCccccCCCCCCEEEEEeeecCCC--------cCCCceeeeccCC
Q psy4523 78 QDTPSTLEMEEGDTIEIYQQQTGGF--------KQTPQLQIWHTES 115 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~~~Q~GG~--------~~~~~~~~~~~~~ 115 (126)
...++++.|+.||+|+|.-+.-.|- +.++.-++|.+.+
T Consensus 18 ~~~~~ei~lk~Gd~VeVl~k~~~gwW~vr~~~~~~~~~~eGWVPa~ 63 (71)
T 1v1c_A 18 GAEQDAITLREGQYVEVLDAAHPLRWLVRTKPTKSSPSRQGWVSPA 63 (71)
T ss_dssp SCCTTBCCBCTTCEEEEEEEEETTEEEEEECCCTTCCCCEEEECGG
T ss_pred CCCcceeeecCCCEEEEEEcCCCCEEEEEecCCCCCCCccceecHH
Confidence 3456799999999999987655541 1133556776643
No 218
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=35.22 E-value=32 Score=19.87 Aligned_cols=21 Identities=19% Similarity=0.561 Sum_probs=17.4
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-+..
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~ 33 (65)
T 2oaw_A 13 KSPREVTMKKGDILTLLNSTN 33 (65)
T ss_dssp SSTTBCCBCTTCEEEEEECCS
T ss_pred cCCCCCCCCCCCEEEEEEcCC
Confidence 467899999999999987643
No 219
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=35.15 E-value=36 Score=19.99 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=16.2
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (68)
T 2djq_A 19 KNPGDLKFNKGDVILLRRQ 37 (68)
T ss_dssp CCTTCCCCCTTCEEEEEEC
T ss_pred CCcCCccCCCCCEEEEEEe
Confidence 5678999999999999755
No 220
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=34.75 E-value=39 Score=20.56 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=17.1
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (80)
T 1ue9_A 19 SGSEQLSLAPGQLILILKKN 38 (80)
T ss_dssp CSTTBCCCCTTCEEEEEEEC
T ss_pred CCCCCCCCCCCCEEEEEEec
Confidence 46889999999999998763
No 221
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=34.61 E-value=36 Score=20.05 Aligned_cols=21 Identities=19% Similarity=0.553 Sum_probs=17.5
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-...
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~ 39 (70)
T 2cuc_A 19 HRPEELDLQKGEGIRVLGKYQ 39 (70)
T ss_dssp CSTTBCCBCTTCEEEEEEEEE
T ss_pred CCCCcCCCCCCCEEEEEEecC
Confidence 567899999999999987643
No 222
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=34.57 E-value=33 Score=19.88 Aligned_cols=21 Identities=19% Similarity=0.416 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
..+.+|.++-||+|.|.-...
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~ 38 (64)
T 2ak5_A 18 TNEDELSFSKGDVIHVTRVEE 38 (64)
T ss_dssp CSTTBCCBCTTCEEEEEECCT
T ss_pred cCcCcccCCCCCEEEEeEecC
Confidence 357899999999999986543
No 223
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=34.55 E-value=40 Score=20.23 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=17.9
Q ss_pred CCccccCCCCCCEEEEEeeecC
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQTG 100 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~G 100 (126)
+.+.+|.++-||+|.|.-+..+
T Consensus 25 ~~~~eLs~~~Gd~i~v~~~~~~ 46 (73)
T 3c0c_A 25 ENDGELGFREGDLITLTNQIDE 46 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEECSS
T ss_pred CCCCCccCcCCCEEEEEEecCC
Confidence 5678999999999999876433
No 224
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=34.42 E-value=30 Score=20.48 Aligned_cols=19 Identities=16% Similarity=0.419 Sum_probs=16.2
Q ss_pred CccccCCCCCCEEEEEeee
Q psy4523 80 TPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 80 TP~dL~MeDGD~Idv~~~Q 98 (126)
.+.+|.++-||+|.|.-..
T Consensus 21 ~~~eLs~~~Gd~i~v~~~~ 39 (67)
T 2eyx_A 21 DKTALALEVGELVKVTKIN 39 (67)
T ss_dssp CSSBCCBCSSEEEEEEEEC
T ss_pred CCCccccCCCCEEEEEEec
Confidence 5679999999999998654
No 225
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=34.05 E-value=21 Score=21.33 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=16.1
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-+
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~ 31 (65)
T 2fei_A 13 QNEDELELKVGDIIDINEE 31 (65)
T ss_dssp CSTTBCCCCTTCEEECCCC
T ss_pred CCcCccCCCCCCEEEEEEe
Confidence 5678999999999998754
No 226
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=34.02 E-value=42 Score=20.34 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-+..
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~ 37 (73)
T 2lcs_A 17 ENDNELRLAEGDIVFISYKHG 37 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEEET
T ss_pred CCCCccCCcCCCEEEEEEEcC
Confidence 467899999999999876543
No 227
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.98 E-value=35 Score=21.38 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 30 ~~~~eLsf~~Gd~i~v~~~~ 49 (88)
T 2dbk_A 30 YDKTALALEVGDIVKVTRMN 49 (88)
T ss_dssp TCSSBCCBCTTCEEEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEec
Confidence 36889999999999998654
No 228
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.92 E-value=34 Score=20.25 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-+..
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~ 39 (68)
T 2dmo_A 19 ETKEELQVMPGNIVFVLKKGN 39 (68)
T ss_dssp CSSSSCCCCTTCEEEECEECS
T ss_pred CCcCCCCCCCCCEEEEEEeCC
Confidence 567799999999999986543
No 229
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.83 E-value=38 Score=19.95 Aligned_cols=19 Identities=47% Similarity=0.602 Sum_probs=16.3
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (68)
T 1x2k_A 19 RTPDELYFEEGDIIYITDM 37 (68)
T ss_dssp CSTTBCCCCSSCEEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEc
Confidence 4567999999999999866
No 230
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.58 E-value=39 Score=19.86 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (68)
T 1x2p_A 19 TDETQLSFLRGEKILILRQT 38 (68)
T ss_dssp SSTTBCCCCTTCEEEEEECC
T ss_pred CCcCCcCCCCCCEEEEEEcC
Confidence 46789999999999998764
No 231
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Probab=33.41 E-value=1.3e+02 Score=21.38 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=43.8
Q ss_pred cEEEEEEeccCCEEEEEecCC------------CcHHHHHHHHHHHhhhhhhhhhhhccC-----ccceeEEEECCeecC
Q psy4523 14 HINLKVLGQDNNVVQFKIKKG------------TPLRKLMNAYCERCVSILSVLITLQNL-----SMSTVRFRFDGQAIN 76 (126)
Q Consensus 14 ~I~Ikv~~~~g~~v~fkIk~t------------t~l~kL~~~y~~~~~~~~~~~~~~~gl-----~~~~~rF~fdG~rL~ 76 (126)
...|.+.. .+...||+|.+. ..+..|.+.|.....+..+.. ..... ....++-+||=.
T Consensus 94 ~~~LSv~~-~~~v~h~~I~~~~~g~~~~~~~~f~sl~eLv~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~al~~y~--- 168 (217)
T 1gri_A 94 DFSLSVKF-GNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQI-FLRDIEQVPQQPTYVQALFDFD--- 168 (217)
T ss_dssp CEEEEEEE-TTEEEEEEEEECSSSCEESSSCEESSHHHHHHHHHHSCSSSSTTC-CCCBCCCCCCCCCEEEESSCCC---
T ss_pred CEEEEEEE-CCEEEEEEEEEcCCCCEEEeeeEcCCHHHHHHhhhccccccccce-eecccccCCCCceEEEecCCcc---
Confidence 45566654 234457888753 467888888876632111000 00000 112233344332
Q ss_pred CCCCccccCCCCCCEEEEEeeec
Q psy4523 77 EQDTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 77 ~~~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
.+.+.+|.+.-||+|.|.-+..
T Consensus 169 -~~~~~eL~~~~Gd~i~v~~~~~ 190 (217)
T 1gri_A 169 -PQEDGELGFRRGDFIHVMDNSD 190 (217)
T ss_dssp -CSSTTBCCCCTTCEEEEEECCS
T ss_pred -CCCCCcCCCCCCCEEEEEEeCC
Confidence 2457899999999999987643
No 232
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=33.39 E-value=34 Score=19.17 Aligned_cols=20 Identities=15% Similarity=0.428 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 12 ~~~~eLs~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 12 QGDDEISIDPGDIITVIRGD 31 (54)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCCCCccCCCCCEEEEEEec
Confidence 46789999999999998765
No 233
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=33.29 E-value=30 Score=21.31 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=18.7
Q ss_pred CCccccCCCCCCEEEEEeeecCC
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+.+.+|.++-||+|.|.-...+|
T Consensus 22 ~~~~eLsf~~Gd~i~v~~~~~~~ 44 (80)
T 2i0n_A 22 SDTSLLPFKRNDIITITFKDQEN 44 (80)
T ss_dssp CSSSSCCBCSSEEEEEEEESSSS
T ss_pred CCCCCcCCCCCCEEEEEEecCCC
Confidence 46789999999999998775444
No 234
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.17 E-value=38 Score=20.27 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=17.9
Q ss_pred CCccccCCCCCCEEEEEeeecC
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQTG 100 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~G 100 (126)
+.+.+|.++-||+|.|.-+..+
T Consensus 21 ~~~~eLs~~~Gd~i~v~~~~~~ 42 (72)
T 2dl8_A 21 RTARELSFKKGASLLLYQRASD 42 (72)
T ss_dssp SSSSBCCBCTTCEEEEEEEEET
T ss_pred CCCCEeccCCCCEEEEEeecCC
Confidence 4678999999999999876443
No 235
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=33.16 E-value=23 Score=20.62 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=18.5
Q ss_pred CeecCCCCCccccCCCCCCEEEEEee
Q psy4523 72 GQAINEQDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 72 G~rL~~~~TP~dL~MeDGD~Idv~~~ 97 (126)
|+-.=+..--+.|+++.||.+++.++
T Consensus 12 gqi~IPk~ir~~lgi~~Gd~v~i~~~ 37 (53)
T 2l66_A 12 YQVTIPAKVRQKFQIKEGDLVKVTFD 37 (53)
T ss_dssp SCBCCCHHHHHHSCCCTTCEEEEEEC
T ss_pred CEEEeCHHHHHHcCcCCCCEEEEEEE
Confidence 43333444456789999999999875
No 236
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=33.02 E-value=44 Score=19.30 Aligned_cols=20 Identities=15% Similarity=0.551 Sum_probs=17.1
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
..+.+|.++-||+|.|.-..
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (65)
T 1w1f_A 19 IHPDDLSFKKGEKMKVLEEH 38 (65)
T ss_dssp CSSSCCCBCTTCEEEEEEEC
T ss_pred cCCCcCCCCCCCEEEEEEcC
Confidence 46789999999999998765
No 237
>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A
Probab=32.66 E-value=47 Score=19.03 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (65)
T 3u23_A 19 QNEDELELKVGDIIDINEEV 38 (65)
T ss_dssp SSTTBCCBCTTCEEEEEEEE
T ss_pred CCcCCcCCCCCCEEEEEEec
Confidence 46788999999999988654
No 238
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.49 E-value=35 Score=20.86 Aligned_cols=19 Identities=16% Similarity=0.407 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-.
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~ 47 (79)
T 1x6b_A 29 KQADEVTLQQADVVLVLQQ 47 (79)
T ss_dssp CSSSBCCCCTTEEEEEEEE
T ss_pred CCcCCcCCCCCCEEEEEEe
Confidence 5678999999999999876
No 239
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=32.23 E-value=35 Score=19.35 Aligned_cols=19 Identities=21% Similarity=0.524 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-+
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~ 32 (60)
T 2v1q_A 14 ESQDELTIKSGDKVYILDD 32 (60)
T ss_dssp CSTTBCCBCTTCEEEEEES
T ss_pred CCCCCccCCCCCEEEEEeC
Confidence 5678999999999999875
No 240
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.48 E-value=38 Score=20.56 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (78)
T 2yuo_A 19 HDDDELGFRKNDIITIISQK 38 (78)
T ss_dssp SSTTBCCBCTTCEEEEEECC
T ss_pred CCCCCccCCCCCEEEEEEec
Confidence 45779999999999998654
No 241
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}
Probab=31.39 E-value=39 Score=19.94 Aligned_cols=20 Identities=25% Similarity=0.629 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~~ 39 (69)
T 2dil_A 20 QNPDELDLSAGDILEVILEG 39 (69)
T ss_dssp SSSSSCCBCTTCEEEEEECC
T ss_pred cCcCccCCCCCCEEEEEECC
Confidence 46789999999999998763
No 242
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.04 E-value=42 Score=20.46 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=17.3
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-+..
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~~ 49 (78)
T 2ed0_A 29 DKEDELSFQEGAIIYVIKKND 49 (78)
T ss_dssp SSTTBCCBCSSCEEEEEEECS
T ss_pred cCcCcccccCCCEEEEEEeCC
Confidence 467899999999999987643
No 243
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=30.84 E-value=28 Score=21.15 Aligned_cols=27 Identities=30% Similarity=0.446 Sum_probs=21.8
Q ss_pred CCeecCCCCCccccCCCCCCEEEEEee
Q psy4523 71 DGQAINEQDTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 71 dG~rL~~~~TP~dL~MeDGD~Idv~~~ 97 (126)
.|+-+=+.+--+.|+++.||.+++.++
T Consensus 21 kGqItIPkeiR~~Lgi~~Gd~l~i~~~ 47 (59)
T 1yfb_A 21 LGRVVIPIELRRTLGIAEKDALEIYVD 47 (59)
T ss_dssp TCEEECCHHHHHHTTCCTTCEEEEEEE
T ss_pred CCEEEeCHHHHHHcCCCCCCEEEEEEE
Confidence 466666667778899999999999885
No 244
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}
Probab=30.40 E-value=31 Score=20.39 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=17.8
Q ss_pred CCccccCCCCCCEEEEEeeecC
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQTG 100 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~G 100 (126)
+.+.+|.++-||+|.|.-+..+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~ 40 (70)
T 2ecz_A 19 DTQVEMSFRKGERITLLRQVDE 40 (70)
T ss_dssp CSTTBCCCCTTCBCEEEEEEET
T ss_pred CCcCCcCCCCCCEEEEEEecCC
Confidence 4678999999999999876433
No 245
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.38 E-value=35 Score=20.20 Aligned_cols=21 Identities=14% Similarity=0.509 Sum_probs=17.5
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-...
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~~~ 40 (70)
T 2ega_A 20 QENSELSLQAGEVVDVIEKNE 40 (70)
T ss_dssp CSSSSCCCCTTCBCEEEEECT
T ss_pred CCCCcccCCCCCEEEEEEccC
Confidence 468899999999999987643
No 246
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.36 E-value=37 Score=19.95 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (70)
T 2ct3_A 19 QNEDELELREGDRVDVMQQC 38 (70)
T ss_dssp SSTTBCCBCTTEEEEEEEEC
T ss_pred CCcCCccCCCCCEEEEEEEC
Confidence 56779999999999998653
No 247
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural protein; 1.75A {Gallus gallus}
Probab=30.25 E-value=41 Score=20.58 Aligned_cols=21 Identities=19% Similarity=0.561 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-+..
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~~ 34 (80)
T 2pqh_A 14 KSPREVTMKKGDILTLLNSTN 34 (80)
T ss_dssp CSTTBCCBCTTCEEEEEECCS
T ss_pred CCCCccCCCCCCEEEEEEecC
Confidence 457799999999999987633
No 248
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=30.21 E-value=42 Score=19.71 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
..+.+|.+.-||+|.|.-..
T Consensus 14 ~~~~eLs~~~Gd~i~v~~~~ 33 (67)
T 1gl5_A 14 TEAHDLRLERGQEYIILEKN 33 (67)
T ss_dssp SSSSBCCBCTTCEEEEEECS
T ss_pred CCCCeecCCcCCEEEEEEcc
Confidence 46789999999999998764
No 249
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}
Probab=30.19 E-value=40 Score=20.20 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=16.8
Q ss_pred CccccCCCCCCEEEEEeeec
Q psy4523 80 TPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 80 TP~dL~MeDGD~Idv~~~Q~ 99 (126)
.+.+|.++-||+|.|.-+..
T Consensus 12 ~~~eLs~~~Gd~i~v~~~~~ 31 (73)
T 2kxd_A 12 GGREVTMKKGDILTLLNSTN 31 (73)
T ss_dssp CSCCCCBCTTCEEEEEECCS
T ss_pred CCCEeeEcCCCEEEEEEecC
Confidence 57899999999999987643
No 250
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=30.09 E-value=32 Score=21.65 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-...
T Consensus 31 ~~~~eLsf~~GDiI~V~~~~~ 51 (83)
T 2ke9_A 31 HDPTALNVRAGDVITVLEQHP 51 (83)
T ss_dssp SCTTBCCBCTTCEEEESCSSC
T ss_pred CCCCcccccCCCEEEEEEecC
Confidence 567899999999999976543
No 251
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=29.78 E-value=52 Score=18.91 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 21 ~~~~eLs~~~Gd~i~v~~~~ 40 (65)
T 3ulr_B 21 AGDDEISFDPDDIITNIEMI 40 (65)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCcCEeeEecCCEEEEEEec
Confidence 46778999999999987654
No 252
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=29.47 E-value=50 Score=19.47 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
..+.+|.++-||+|.|.-+..
T Consensus 15 ~~~~eLsf~~Gd~i~v~~~~~ 35 (65)
T 1b07_A 15 NDEEDLPFKKGDILRIRDKPE 35 (65)
T ss_dssp SSTTBCCBCTTCEEEEEECSS
T ss_pred CCCCccCCcCCCEEEEEEecC
Confidence 456789999999999987543
No 253
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.21 E-value=53 Score=19.93 Aligned_cols=22 Identities=9% Similarity=0.133 Sum_probs=17.5
Q ss_pred CCccccCCCCCCEEEEEeeecC
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQTG 100 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~G 100 (126)
..+.+|.++-||+|.|.-...+
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~~~~ 50 (79)
T 1x69_A 29 AGDDEISFDPDDIITNIEMIDD 50 (79)
T ss_dssp SSSSBCCCCTTCEEEEEEECSS
T ss_pred CCCCCcCcCCCCEEEEeEecCC
Confidence 4678999999999999865433
No 254
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=29.10 E-value=55 Score=19.98 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=17.6
Q ss_pred CCccccCCCCCCEEEEEeeecC
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQTG 100 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~G 100 (126)
..+.+|.++-||+|.|.-....
T Consensus 29 ~~~~eLsf~~Gd~i~Vl~~~~~ 50 (72)
T 2l0a_A 29 AEDNELTFKAGEIITVLDDSDP 50 (72)
T ss_dssp SSTTBCCBCTTCEEEEEEEEET
T ss_pred CCCCccCCCCCCEEEEEEecCC
Confidence 4578999999999999876433
No 255
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=29.10 E-value=65 Score=22.50 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=49.7
Q ss_pred CCcEEEEEEeccC------CEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE-CCeecCCCCCcccc
Q psy4523 12 DEHINLKVLGQDN------NVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF-DGQAINEQDTPSTL 84 (126)
Q Consensus 12 ~~~I~Ikv~~~~g------~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f-dG~rL~~~~TP~dL 84 (126)
+++|-|.|.-..+ ....|.|..+.++..++....++ ..+++++--|+| |+.....++|..+|
T Consensus 34 P~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkr-----------l~L~~~~alFl~Vnn~lPs~s~~m~~l 102 (125)
T 3m95_A 34 PDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKR-----------IHLRPEDALFFFVNNVIPPTSATMGSL 102 (125)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHH-----------TTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhh-----------cCCCccccEEEEECCccCCccchHHHH
Confidence 3566666654332 22469999999999999999999 888887766666 66555556666665
Q ss_pred C----CCCCCEEEEE
Q psy4523 85 E----MEEGDTIEIY 95 (126)
Q Consensus 85 ~----MeDGD~Idv~ 95 (126)
- =+||=..-.+
T Consensus 103 Y~~~kdeDGfLY~~Y 117 (125)
T 3m95_A 103 YQEHHDEDFFLYIAF 117 (125)
T ss_dssp HHHHCCTTSCEEEEE
T ss_pred HHHcCCCCCeEEEEe
Confidence 2 2666654444
No 256
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=28.86 E-value=29 Score=20.78 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=14.6
Q ss_pred Cccc-cCCCCCCEEEEEeee
Q psy4523 80 TPST-LEMEEGDTIEIYQQQ 98 (126)
Q Consensus 80 TP~d-L~MeDGD~Idv~~~Q 98 (126)
.+.+ |.++-||+|.|.-+.
T Consensus 16 ~~~e~Ls~~~Gd~i~v~~~~ 35 (60)
T 2lx7_A 16 RHGQGLRFAAGELITLLQVP 35 (60)
T ss_dssp CCSSCCCCCTTCEEEBSCCC
T ss_pred CCCCCccCCCCCEEEEeEec
Confidence 4445 999999999987543
No 257
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A
Probab=28.86 E-value=34 Score=20.72 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=16.1
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-+
T Consensus 22 ~~~~eLsf~~Gd~i~v~~~ 40 (76)
T 2ed1_A 22 DNDDELTFIEGEVIIVTGE 40 (76)
T ss_dssp SSSSBCCCCSSCEEEESSC
T ss_pred CCcCCcCcCCCCEEEEEEe
Confidence 5678999999999999753
No 258
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=28.80 E-value=59 Score=19.01 Aligned_cols=20 Identities=20% Similarity=0.552 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
..+.+|.++-||+|.|.-+.
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (69)
T 4esr_A 18 NRSDELTIHRGDIIRVFFKD 37 (69)
T ss_dssp CSTTBCCBCTTCEEEEEEEC
T ss_pred CCcCcCCCCCCCEEEEEEec
Confidence 46789999999999988654
No 259
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Probab=28.53 E-value=53 Score=18.69 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.+.-||+|.|....
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (64)
T 4f14_A 18 QDEDEVSFRDGDYIVNVQPI 37 (64)
T ss_dssp CSTTBCCBCTTCEEEEEEEC
T ss_pred cCCCcCCCCCCCEEEEEEeC
Confidence 46778999999999987653
No 260
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.43 E-value=47 Score=20.34 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=17.4
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-+..
T Consensus 20 ~~~~eLs~~~Gd~i~vl~~~~ 40 (80)
T 2ekh_A 20 VQDSEISFPAGVEVQVLEKQE 40 (80)
T ss_dssp SSTTSCCBCTTCEEEEEEECT
T ss_pred CCCCccCcCCCCEEEEEEeCC
Confidence 567899999999999986543
No 261
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A
Probab=28.35 E-value=50 Score=20.32 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 17 ~~~~eLs~~~Gd~i~vl~~~ 36 (79)
T 3cqt_A 17 RTEDDLSFHKGEKFQILNSS 36 (79)
T ss_dssp CSTTBCCBCTTCEEEEEECT
T ss_pred CCcCcCCCCCCCEEEEEEec
Confidence 46789999999999998653
No 262
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.31 E-value=50 Score=20.57 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=16.8
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~ 48 (88)
T 1x2q_A 29 VEDNELTFKHGEIIIVLDDS 48 (88)
T ss_dssp CSSSCCCCCSSCEEEEEECS
T ss_pred CCcCccCCCCCCEEEEEEeC
Confidence 45778999999999998754
No 263
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A
Probab=28.16 E-value=37 Score=20.92 Aligned_cols=18 Identities=11% Similarity=0.458 Sum_probs=16.0
Q ss_pred CCccccCCCCCCEEEEEe
Q psy4523 79 DTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~ 96 (126)
+.+.+|.++.||+|.|.-
T Consensus 17 ~~~~eLs~~~Gd~I~V~~ 34 (83)
T 3i5r_A 17 EREEDIDLHLGDILTVNK 34 (83)
T ss_dssp CSTTBCCBCTTCEEEEEH
T ss_pred CCCCccccCCCCEEEEee
Confidence 578899999999999983
No 264
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.13 E-value=41 Score=19.88 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=17.6
Q ss_pred CCCccccCCCCCCEEEEEeeec
Q psy4523 78 QDTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 78 ~~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
.+.+.+|.++-||+|.|.-...
T Consensus 19 ~~~~~eLs~~~Gd~i~v~~~~~ 40 (71)
T 2dnu_A 19 SQSKDEIGFEKGVTVEVIRKNL 40 (71)
T ss_dssp CSSTTBCCBCTTCEEEECCCCS
T ss_pred CCCCCCCcCCCCCEEEEeECCC
Confidence 3567899999999999986533
No 265
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=28.08 E-value=46 Score=19.61 Aligned_cols=20 Identities=20% Similarity=0.523 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (71)
T 2jt4_A 18 ESQDELTIKSGDKVYILDDK 37 (71)
T ss_dssp SSTTBCCBCTTCEEEEEESS
T ss_pred CCCCcccCCCCCEEEEEECC
Confidence 56789999999999998753
No 266
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=28.07 E-value=54 Score=19.36 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.9
Q ss_pred CCccccCCCCCCEEEEEe
Q psy4523 79 DTPSTLEMEEGDTIEIYQ 96 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~ 96 (126)
..+.+|.++-||+|.|.-
T Consensus 23 ~~~~eLs~~~Gd~i~v~~ 40 (71)
T 1csk_A 23 TAEQDLPFCKGDVLTIVA 40 (71)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred CCCCcCCCCCCCEEEEeE
Confidence 456899999999999987
No 267
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=28.06 E-value=49 Score=19.08 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~ 37 (64)
T 2jte_A 18 TNEDELTFREGEIIHLISKE 37 (64)
T ss_dssp SSSSBCCBCTTCEEEEEESC
T ss_pred cCCCccCCCCCCEEEEEECC
Confidence 56789999999999998664
No 268
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=27.87 E-value=59 Score=18.44 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (60)
T 1oot_A 15 EESGDLPFRKGDVITILKKS 34 (60)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCcCEeeEcCCCEEEEEEeC
Confidence 45789999999999998764
No 269
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.83 E-value=47 Score=20.13 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
..+.+|.++-||+|.|.-+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (79)
T 2yun_A 19 RQDDELNLEKGDIVIIHEKK 38 (79)
T ss_dssp SSTTBCCBCTTCEEEEEECC
T ss_pred CCCCCcCCCCCCEEEEEEcC
Confidence 46789999999999987653
No 270
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=27.54 E-value=1.4e+02 Score=19.95 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=34.6
Q ss_pred CCCCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHH
Q psy4523 9 KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCER 47 (126)
Q Consensus 9 ~~~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~ 47 (126)
-+...++.|||-..||....+.|..+.+-+.+.+.-+++
T Consensus 4 ~~~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K 42 (100)
T 1wgr_A 4 GSSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQR 42 (100)
T ss_dssp CCCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCS
T ss_pred cccCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHH
Confidence 345567899999999999999999999999999999988
No 271
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=27.48 E-value=57 Score=19.53 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.+.-||+|.|.-..
T Consensus 14 ~~~~eLs~~~Gd~i~vl~~~ 33 (69)
T 2ydl_A 14 QNDDELTIKEGDIVTLINKD 33 (69)
T ss_dssp CSTTBCCBCTTCEEEEEESC
T ss_pred CCCCccccCCCCEEEEEEcC
Confidence 46789999999999998763
No 272
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Probab=27.45 E-value=62 Score=18.32 Aligned_cols=21 Identities=19% Similarity=0.553 Sum_probs=17.4
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-+..
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~~~ 38 (62)
T 3ngp_A 18 KSPRELTVKKGDILTLLNSTN 38 (62)
T ss_dssp CSTTBCCBCTTCEEEEEECCS
T ss_pred CCCCCccCCCCCEEEEeEecC
Confidence 477899999999999987643
No 273
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=27.39 E-value=47 Score=22.79 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=40.7
Q ss_pred CcEEEEEEe-ccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCee
Q psy4523 13 EHINLKVLG-QDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQA 74 (126)
Q Consensus 13 ~~I~Ikv~~-~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~r 74 (126)
.+|.+++.- ..++.+.++-|++.++..+..-.-.+ .|+..+.+..+..|..
T Consensus 15 ~Rv~F~L~l~p~~ksI~IksKptK~l~evLrPIL~K-----------Y~l~l~qv~v~~~g~~ 66 (104)
T 1wfy_A 15 NRITFQLELVGLERVVRISAKPTKRLQEALQPILAK-----------HGLSLDQVVLHRPGEK 66 (104)
T ss_dssp SCEEEEEEESSSSSEEEEEECSSSBTTTTTHHHHTT-----------TTCCTTTCCBCCTTCS
T ss_pred eeEEEEEeccCCCcEEEEEecCCCcHHHHHHHHHHH-----------cCCChhhEEEEecCCc
Confidence 578888865 77899999999999999999888888 7887777666555543
No 274
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=27.13 E-value=48 Score=19.03 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-.
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~ 36 (62)
T 2iim_A 18 SHDGDLGFEKGEQLRILEQ 36 (62)
T ss_dssp CSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCcCCCCCCEEEEEEc
Confidence 5678999999999999876
No 275
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A
Probab=26.98 E-value=39 Score=21.39 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=19.9
Q ss_pred eeEEEECCeecCCCCCccccCCCCCCEEEEE
Q psy4523 65 TVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 65 ~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~ 95 (126)
.++-+|+-.. +.+.+|.++.||+|.|.
T Consensus 13 ~~~Alydy~a----~~~~ELsf~~GD~I~V~ 39 (90)
T 3o5z_A 13 QYRALYPFRR----ERPEDLELLPGDVLVVS 39 (90)
T ss_dssp EEEECSCBCC----CSTTBCCBCTTCEEEEE
T ss_pred EEEEeeeECC----CCCCccCCcCCCEEEEE
Confidence 4455555332 57889999999999987
No 276
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1
Probab=26.96 E-value=49 Score=20.80 Aligned_cols=21 Identities=19% Similarity=0.561 Sum_probs=17.4
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.+.-||+|.|.-...
T Consensus 29 ~~~~eLsf~~Gd~i~Vl~~~~ 49 (83)
T 1neg_A 29 KSPREVTMKKGDILTLLNSTN 49 (83)
T ss_dssp SSTTBCCBCTTCEEEEEECCS
T ss_pred CCCCccccCCCCEEEEEEecC
Confidence 567899999999999987643
No 277
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Probab=26.86 E-value=33 Score=20.14 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=17.3
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-...
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~~~ 40 (67)
T 1aww_A 20 MNANDLQLRKGDEYFILEESN 40 (67)
T ss_dssp SSSSSCCCCSSCEEECCCCCS
T ss_pred CCCCCccCCCCCEEEEEEccC
Confidence 468899999999999986643
No 278
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...
Probab=26.84 E-value=56 Score=20.32 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=17.1
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.+.-||+|.|.-...
T Consensus 18 ~~~~eLsf~~Gd~i~vl~~~~ 38 (84)
T 4ag1_C 18 TRWTDLSFHKGEKFQILEFGP 38 (84)
T ss_dssp SBTTBCCBCTTCEEEEEECCS
T ss_pred CCCCcccccCCCEEEEEEecC
Confidence 457899999999999986543
No 279
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.76 E-value=48 Score=19.55 Aligned_cols=19 Identities=11% Similarity=0.359 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
..+.+|.++-||+|.|.-+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (68)
T 1wxb_A 19 RNANELSVLKDEVLEVLED 37 (68)
T ss_dssp SSSSBCCBCTTCEEEEEEC
T ss_pred CCCCccCCCCCCEEEEEEc
Confidence 4678999999999999865
No 280
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*
Probab=26.65 E-value=59 Score=19.18 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=21.4
Q ss_pred ceeEEEECCeecCCCCCccccCCCCCCEEEEEeee
Q psy4523 64 STVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 64 ~~~rF~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q 98 (126)
..++-+||= ..+.+.+|.++-||+|.|.-..
T Consensus 16 ~~~~al~dy----~~~~~~eLs~~~Gd~i~v~~~~ 46 (73)
T 3h0h_A 16 TLFVALYDY----EAITEDDLSFHKGEKFQILNSS 46 (73)
T ss_dssp CEEEESSCB----CCSSTTBCCBCTTCEEEEEECS
T ss_pred EEEEECccC----CCCCCCcceEeCCCEEEEEEec
Confidence 344555542 2346789999999999997654
No 281
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=26.46 E-value=27 Score=20.62 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (68)
T 1wi7_A 19 QNDDELELKVGDIIEVVGEV 38 (68)
T ss_dssp SSTTBCCBCTTCEECCCEEE
T ss_pred CCCCCccCcCCCEEEEEEcC
Confidence 46789999999999987653
No 282
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.29 E-value=40 Score=21.13 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-+
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~ 47 (90)
T 2yup_A 29 DLEVELSFRKGEHICLIRK 47 (90)
T ss_dssp CSSSBCCCCTTCEEEESSC
T ss_pred CCcCcCCCCCCCEEEEEEE
Confidence 4678999999999999865
No 283
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=26.25 E-value=66 Score=20.48 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=14.3
Q ss_pred ccccCCCCCCEEEEE
Q psy4523 81 PSTLEMEEGDTIEIY 95 (126)
Q Consensus 81 P~dL~MeDGD~Idv~ 95 (126)
+.+|.++.||+|.|.
T Consensus 37 ~~eLsf~~Gd~i~v~ 51 (96)
T 1wie_A 37 EAELPLTAGKYLYVY 51 (96)
T ss_dssp TTBCCCCTTCEEEEE
T ss_pred CCeeeECCCCEEEEe
Confidence 889999999999998
No 284
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1
Probab=26.14 E-value=42 Score=19.97 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=16.1
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-.
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~ 38 (72)
T 1spk_A 20 NNKTLLSFAQGDVLTLLIP 38 (72)
T ss_dssp SCSSBCCBCTTCEEEECCS
T ss_pred CCCCCCcCCCCCEEEEeEc
Confidence 5678999999999999754
No 285
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=26.08 E-value=1.4e+02 Score=19.63 Aligned_cols=45 Identities=16% Similarity=0.303 Sum_probs=34.8
Q ss_pred CCcEEEEEEeccCCEEEEEecC--CCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE
Q psy4523 12 DEHINLKVLGQDNNVVQFKIKK--GTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF 70 (126)
Q Consensus 12 ~~~I~Ikv~~~~g~~v~fkIk~--tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f 70 (126)
...++|+|.. .|....|.|.- ++++..|....+.. .|++ ++++.|
T Consensus 4 ~~~v~lkV~f-~ge~~rf~vs~~~~~tweel~~mvk~~-----------f~L~--~~~ikY 50 (87)
T 2bkf_A 4 EPQVTLNVTF-KNEIQSFLVSDPENTTWADIEAMVKVS-----------FDLN--TIQIKY 50 (87)
T ss_dssp CCCEEEEEEE-TTEEEEEEESCGGGCCHHHHHHHHHHH-----------HTCS--SEEEEE
T ss_pred CceEEEEEEE-cCCeeEEEeccCCCCCHHHHHHHHHHH-----------cCCC--ceEEEE
Confidence 3578888876 47666777744 99999999999999 7785 566666
No 286
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}
Probab=26.07 E-value=2.2e+02 Score=21.71 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=44.2
Q ss_pred CcEEEEEEeccCC---EEEEEecC-C------------------CcHHHHHHHHHHHhhhhhhhhhhhccC-ccceeEEE
Q psy4523 13 EHINLKVLGQDNN---VVQFKIKK-G------------------TPLRKLMNAYCERCVSILSVLITLQNL-SMSTVRFR 69 (126)
Q Consensus 13 ~~I~Ikv~~~~g~---~v~fkIk~-t------------------t~l~kL~~~y~~~~~~~~~~~~~~~gl-~~~~~rF~ 69 (126)
....|.|+.. +. ..+|+|.. . ..+..|.+.|.......+. +...... ....++-+
T Consensus 76 g~y~LSv~~~-~~~~~v~H~~I~~~~~~~~g~~~g~~~~~~~~F~Sl~eLv~~y~~~~~~~~~-L~~P~~~p~~~~~~al 153 (308)
T 3qwy_A 76 GEYSLTVREA-DEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS-LLAAYKKPIIEVVVGT 153 (308)
T ss_dssp TCEEEEEECC-SSSSCEEEEEEEECCCCTTTTCCCCEEETTEEESSHHHHHHHHHHSCSSSCC-CCEECCCCCCEEEEES
T ss_pred CCEEEEEEeC-CCCCceEEEEEeeccCCCcCcccceEEEeCeeeCCHHHHHHHHhhcccccch-hccccccccceeEEEe
Confidence 3456666653 34 66788865 2 3567788888766321100 0000000 01134444
Q ss_pred ECCeecCCCCCccccCCCCCCEEEEEeee
Q psy4523 70 FDGQAINEQDTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 70 fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q 98 (126)
||= ..+.+.+|.+.-||+|.|.-..
T Consensus 154 ~dy----~~~~~~eLsf~~Gd~i~v~~~~ 178 (308)
T 3qwy_A 154 FKF----TGERETDLPFEQGERLEILSKT 178 (308)
T ss_dssp SCB----CCSSTTBCCBCTTCEEEEEECC
T ss_pred ceE----cCCCCCcCcCCCCCEEEEEEcC
Confidence 432 2357789999999999998654
No 287
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=26.06 E-value=40 Score=21.50 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=19.3
Q ss_pred CCccccCCCCCCEEEEEeeecCC
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~GG 101 (126)
+-...|+++.||+.++.++..+|
T Consensus 32 eI~kaLgIk~gD~fel~ve~kdg 54 (68)
T 3o27_A 32 DIAEALDIKPDDTFILNMEQKDG 54 (68)
T ss_dssp HHHHHTTCCTTCCEEEEEEEETT
T ss_pred HHHHHhCCCCCCEEEEEEecCCC
Confidence 44567899999999999998787
No 288
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=26.06 E-value=34 Score=25.07 Aligned_cols=26 Identities=12% Similarity=0.328 Sum_probs=8.8
Q ss_pred CCCCccccCCCCCCEEEEEeeecCCC
Q psy4523 77 EQDTPSTLEMEEGDTIEIYQQQTGGF 102 (126)
Q Consensus 77 ~~~TP~dL~MeDGD~Idv~~~Q~GG~ 102 (126)
+.+=-+.|.++|||+|.|.+.-.|.-
T Consensus 201 ~~~L~~~l~l~~g~~v~~~~~~~~~~ 226 (230)
T 3cta_A 201 DKYLREEINLHDGDRVSVEVYTEGHH 226 (230)
T ss_dssp C------------CEEEEEECC----
T ss_pred CcchHhhcCCCCCCEEEEEEEecCcc
Confidence 33333457899999999999877753
No 289
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=26.05 E-value=14 Score=25.96 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=14.7
Q ss_pred CCccccCCCCCCEEEEE
Q psy4523 79 DTPSTLEMEEGDTIEIY 95 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~ 95 (126)
++++.||++|||.|.|.
T Consensus 60 ~dA~~lGI~dGd~V~V~ 76 (146)
T 2ki8_A 60 EDWNALGLQEGDRVKVK 76 (146)
T ss_dssp HHHHHHTCCTTCEEEEE
T ss_pred HHHHHcCCCCCCEEEEE
Confidence 66789999999998876
No 290
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=26.01 E-value=46 Score=18.88 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (60)
T 2x3w_D 15 QEQDELSFKAGDELTKLGEE 34 (60)
T ss_dssp SSSSBCCBCTTCEEEECSCC
T ss_pred cCCCcccCCCCCEEEEEEcc
Confidence 45779999999999997653
No 291
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=25.79 E-value=42 Score=19.90 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.3
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
..+.+|.++-||+|.| -+
T Consensus 22 ~~~~eLs~~~Gd~i~v-~~ 39 (72)
T 2kgt_A 22 RTDEELSFRAGDVFHV-AR 39 (72)
T ss_dssp SSTTSCBCCTTCCEEE-EE
T ss_pred CCcCCcCCCCCCEEEE-ee
Confidence 5678999999999999 44
No 292
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.75 E-value=41 Score=20.38 Aligned_cols=22 Identities=18% Similarity=0.444 Sum_probs=17.7
Q ss_pred CCccccCCCCCCEEEEEeeecC
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQTG 100 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~G 100 (126)
+.+.+|.++-||+|.|.-....
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~~~ 43 (76)
T 2epd_A 22 RTAQELSFRRGDVLRLHERASS 43 (76)
T ss_dssp SSTTBCEECTTCEEEEEEEEET
T ss_pred CCCCccCCCCCCEEEEEEeCCC
Confidence 4678999999999999876433
No 293
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=25.66 E-value=41 Score=19.70 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=16.1
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (67)
T 2kxc_A 19 SNKTLLSFAQGDVITLLIP 37 (67)
T ss_dssp SCSSBCCBCTTCEEEESSS
T ss_pred CCCCCCcCCCCCEEEEeEC
Confidence 4678999999999999763
No 294
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=25.64 E-value=43 Score=24.07 Aligned_cols=80 Identities=15% Similarity=0.207 Sum_probs=50.2
Q ss_pred CCCCcEEEEEEec-cCCEEE-EEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEECCeecCCCCCccccCCC
Q psy4523 10 STDEHINLKVLGQ-DNNVVQ-FKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEME 87 (126)
Q Consensus 10 ~~~~~I~Ikv~~~-~g~~v~-fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~fdG~rL~~~~TP~dL~Me 87 (126)
+.+..|...+++. .|..+- --+++ +++.+-.+. +...-.+.+..+++..|+.=-..+...++.+.
T Consensus 19 ~~~GLipaIvQd~~tg~VLMlayMN~--------EAl~~Tl~t-----g~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~D 85 (138)
T 1zps_A 19 NGEDLIIAVAQDHETGEVLMVAYMNR--------EALRRTLET-----GTAHYWSTSRGKLWLKGESSGHVQRVKDVLVD 85 (138)
T ss_dssp SSCCCEEEEEEETTTCCEEEEEEECH--------HHHHHHHHH-----SBCEEEETTTTEEEETTTTTSCCEEEEEEEEC
T ss_pred CCCCcEEEEEEECCCCCEEEEEecCH--------HHHHHHHhc-----CcEEEEcCCCCccccCccCCCCcEEEEEEEec
Confidence 3467888888884 355543 33333 222222110 00122356667899999877777777777654
Q ss_pred -CCCEEEEEeeecCCC
Q psy4523 88 -EGDTIEIYQQQTGGF 102 (126)
Q Consensus 88 -DGD~Idv~~~Q~GG~ 102 (126)
|+|.|.+.++|.||.
T Consensus 86 CD~D~LL~~V~q~G~a 101 (138)
T 1zps_A 86 CDGDAVVLKVEQEGGA 101 (138)
T ss_dssp TTSSEEEEEEEESSCS
T ss_pred CCCCEEEEEEEecCCc
Confidence 899999999999983
No 295
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1
Probab=25.59 E-value=67 Score=18.94 Aligned_cols=20 Identities=20% Similarity=0.581 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~ 36 (73)
T 3thk_A 17 KSPREVTMKKGDILTLLNST 36 (73)
T ss_dssp CSTTBCCBCTTCEEEEEECC
T ss_pred CCCCccCCCCCCEEEEEECC
Confidence 56889999999999998664
No 296
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=25.46 E-value=46 Score=18.99 Aligned_cols=19 Identities=26% Similarity=0.435 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
..+.+|.+.-||+|.|.-.
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~ 31 (60)
T 1i07_A 13 RNSSELSVMKDDVLEILDD 31 (60)
T ss_dssp SSTTBCCBCTTCEEEECGG
T ss_pred CCCCcccCCCCCEEEEEEc
Confidence 4677999999999999866
No 297
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=25.34 E-value=1.2e+02 Score=20.59 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=50.4
Q ss_pred CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHhhhhhhhhhhhccCccc---eeEEEECCeecC--CCCCccccC
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMS---TVRFRFDGQAIN--EQDTPSTLE 85 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~---~~rF~fdG~rL~--~~~TP~dL~ 85 (126)
.++.|..+|-..|..-+.++++.+..-+.|+.+.+++ .+...+ =+...++|+++- +++..-.-.
T Consensus 6 ~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~k-----------l~~~~e~l~Lv~v~ssGEk~~lqp~d~si~ts 74 (104)
T 1wgy_A 6 SGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEK-----------IQYAEEDLALVAITFSGEKHELQPNDLVISKS 74 (104)
T ss_dssp CSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHH-----------HTSCGGGEEEEEECSSCCCCBCCTTSBSSCCS
T ss_pred CCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHH-----------hcCCccceEEEEEccCCcEeecCCcceEEEee
Confidence 3456777887788888899999999999999999999 555332 355567888765 344433333
Q ss_pred CCCCCEEEEE
Q psy4523 86 MEEGDTIEIY 95 (126)
Q Consensus 86 MeDGD~Idv~ 95 (126)
|.-.-.|-|.
T Consensus 75 L~~NgRLfvc 84 (104)
T 1wgy_A 75 LEASGRIYVY 84 (104)
T ss_dssp SCSSCEEEEE
T ss_pred ccccceEEEe
Confidence 4444444443
No 298
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.27 E-value=34 Score=20.20 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeeecC
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQTG 100 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~G 100 (126)
..+.+|.++-||+|.|.-+..+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~~~ 40 (69)
T 2eqi_A 19 KRSDELTFCRGALIHNVSKEPG 40 (69)
T ss_dssp CSSSCCCBCTTCEEESCCCCSS
T ss_pred CCcCccCCCCCCEEEEEEcCCC
Confidence 4677999999999998765333
No 299
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=25.26 E-value=54 Score=19.29 Aligned_cols=19 Identities=21% Similarity=0.594 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (68)
T 1wxt_A 19 RNPRELTVVQGEKLEVLDH 37 (68)
T ss_dssp CSSSBCCBCTTCEEEEEEC
T ss_pred CCcCcCCCCCCCEEEEEEc
Confidence 5678999999999999876
No 300
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=25.21 E-value=83 Score=17.80 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=17.3
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.+.-||+|.|.-...
T Consensus 17 ~~~~eLs~~~Gd~i~v~~~~~ 37 (63)
T 3eg3_A 17 SGDNTLSITKGEKLRVLGYNH 37 (63)
T ss_dssp CSSSBCCBCTTCEEEEEEECT
T ss_pred CCCCccCCCCCCEEEEEEeCC
Confidence 467789999999999987543
No 301
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.19 E-value=50 Score=19.73 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
..+.+|.++-||+|.|.-+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (77)
T 2d8j_A 19 RTAEDLSFRAGDKLQVLDTS 38 (77)
T ss_dssp SSSSBCCBCTTCCEEEEECC
T ss_pred CCCCccCCCCCCEEEEEECC
Confidence 46779999999999998763
No 302
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=24.97 E-value=76 Score=18.50 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 25 ~~~~eLs~~~Gd~i~v~~~~ 44 (72)
T 4glm_A 25 LEPNELDFEVGDKIRILATL 44 (72)
T ss_dssp CSTTBCCBCTTCEEEEEEEC
T ss_pred CCCCcCCCCCCCEEEEEEcc
Confidence 56788999999999998654
No 303
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.87 E-value=54 Score=19.31 Aligned_cols=20 Identities=20% Similarity=0.576 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
..+.+|.++-||+|.|.-+.
T Consensus 19 ~~~~eLs~~~Gd~i~vl~~~ 38 (70)
T 2ct4_A 19 SSEGTISMAEGEDLSLMEED 38 (70)
T ss_dssp CSTTCCCBCTTCEEEEEECC
T ss_pred CCCCcCCCCCCCEEEEEecc
Confidence 56789999999999998654
No 304
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A
Probab=24.86 E-value=56 Score=19.28 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-+
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~ 38 (68)
T 2k2m_A 20 RNSSELSVKQRDVLEVLDD 38 (68)
T ss_dssp CSSSBCCBCTTCEEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEc
Confidence 5677999999999999876
No 305
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=24.71 E-value=1.7e+02 Score=19.88 Aligned_cols=53 Identities=13% Similarity=0.297 Sum_probs=38.2
Q ss_pred CCCcEEEEEEeccCCEEEEEec--CCCcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE---CCeecCC
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIK--KGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF---DGQAINE 77 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk--~tt~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f---dG~rL~~ 77 (126)
-...++|+|.. .|....|.|. +++++..|....+.. .|++ ++++.| +|..|+-
T Consensus 11 m~~~v~lkV~f-~ge~~rF~Vs~~~~~tweel~~mvk~~-----------f~L~--~~~IkY~DEenD~V~i 68 (101)
T 1wj6_A 11 MEPQVTLNVTF-KNEIQSFLVSDPENTTWADIEAMVKVS-----------FDLN--TIQIKYLDEENEEVSI 68 (101)
T ss_dssp SCSCEEEEEEE-TTEEEEEEESCTTTSCHHHHHHHHHHH-----------HCCS--SBCCEEECTTSCEECC
T ss_pred cCccEEEEEEE-cCCeeEEEecCCCCCCHHHHHHHHHHH-----------cCCC--ceEEEEecCCCCEEEE
Confidence 34578999876 4666678884 499999999999999 7775 555555 3555543
No 306
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.60 E-value=45 Score=19.70 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (70)
T 2da9_A 19 QNDDELTIKEGDIVTLINKD 38 (70)
T ss_dssp SSTTBCCCCTTEEEEEEECC
T ss_pred CCcCEeeEcCCCEEEEEECC
Confidence 56789999999999998763
No 307
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=24.59 E-value=55 Score=19.22 Aligned_cols=20 Identities=25% Similarity=0.685 Sum_probs=17.0
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 15 ~~~~eLs~~~Gd~i~v~~~~ 34 (69)
T 1wyx_A 15 ESPDELSFRKGDIMTVLEQD 34 (69)
T ss_dssp SSTTBCCBCTTCEEEEEETT
T ss_pred CCCCccCCcCCCEEEEeECC
Confidence 56789999999999998764
No 308
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.52 E-value=66 Score=19.59 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.7
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~ 41 (81)
T 2ysq_A 22 MANRELAFKAGDVIKVLDAS 41 (81)
T ss_dssp SSSSSCCCCTTCEEEEEECC
T ss_pred CCCCcCCCCCCCEEEEEEEc
Confidence 56789999999999998653
No 309
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=24.40 E-value=59 Score=19.64 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=15.9
Q ss_pred ccccCCCCCCEEEEEeee
Q psy4523 81 PSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 81 P~dL~MeDGD~Idv~~~Q 98 (126)
+.+|.++-||+|.|.-..
T Consensus 32 ~~eLsf~~Gd~i~v~~~~ 49 (78)
T 1k1z_A 32 GGFLRLNPGDIVELTKAE 49 (78)
T ss_dssp CCCCCBCTTCEEEEEECC
T ss_pred CCccCCCCCCEEEEEEcC
Confidence 689999999999998764
No 310
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.31 E-value=48 Score=19.79 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-+
T Consensus 20 ~~~~eLsf~~Gd~i~v~~~ 38 (73)
T 2dl7_A 20 QTDDELSFPEGAIIRILNK 38 (73)
T ss_dssp SSTTBCCBCTTCEEEEEEC
T ss_pred CCCCcCCCCCCCEEEEEEC
Confidence 4678899999999999875
No 311
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.24 E-value=52 Score=19.32 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=17.1
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (71)
T 2cre_A 19 DCSDELAFSRGDILTILEQH 38 (71)
T ss_dssp SSSSBCCCCSSCCEEEEESC
T ss_pred CCCCCCCCCCCCEEEEeEcC
Confidence 46789999999999998763
No 312
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=24.15 E-value=58 Score=18.27 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=17.5
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-...
T Consensus 13 ~~~~eLs~~~Gd~i~v~~~~~ 33 (58)
T 1zuu_A 13 KDDDEITITPGDKISLVARDT 33 (58)
T ss_dssp CSTTBCCBCTTCCEEEEECCS
T ss_pred cCCCcccCCCCCEEEEeEcCC
Confidence 567899999999999987654
No 313
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.86 E-value=43 Score=21.12 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 28 ~~~~eLs~~~Gd~i~v~~~~ 47 (94)
T 2e5k_A 28 QNDDELELVPGDFIFMSPME 47 (94)
T ss_dssp SSSSBCCBCTTCEEEECGGG
T ss_pred CCCCCcCCCCCCEEEEEECc
Confidence 66889999999999998663
No 314
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.65 E-value=63 Score=20.16 Aligned_cols=20 Identities=10% Similarity=0.313 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~~ 48 (88)
T 2cub_A 29 EREDELSLIKGTKVIVMEKC 48 (88)
T ss_dssp CSTTBCCCCTTEEEEEEEEC
T ss_pred CCCCCcCCCCCCEEEEEEcc
Confidence 56889999999999998764
No 315
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.56 E-value=24 Score=21.14 Aligned_cols=20 Identities=10% Similarity=0.227 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 20 ~~~~eLsf~~Gd~i~v~~~~ 39 (71)
T 2gqi_A 20 PDTDEISFLKGDMFIVHNEL 39 (71)
T ss_dssp TTSSCCCCCTTCBCCCCEEC
T ss_pred CCCCCCCCCCCCEEEEEEec
Confidence 56789999999999987653
No 316
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}
Probab=23.56 E-value=40 Score=20.52 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=17.2
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
+.+.+|.++-||+|.|.-+..
T Consensus 3 ~~~~eLs~~~Gd~i~v~~~~~ 23 (77)
T 2jmc_A 3 MGPREVTMKKGDILTLLNSTN 23 (77)
T ss_dssp SSSCCCCCCTTCEEECCCCCC
T ss_pred cCCCccCCCCCCEEEEEEecC
Confidence 567899999999999986643
No 317
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.47 E-value=65 Score=19.77 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=17.4
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
..+.+|.++-||+|.|.-...
T Consensus 29 ~~~~eLsf~~Gd~i~v~~~~~ 49 (81)
T 1x6g_A 29 PKPGELAFRKGDVVTILEACE 49 (81)
T ss_dssp CCTTCCCBCTTCEEEEEECCC
T ss_pred CCCCCCCCCCCCEEEEEeccC
Confidence 567899999999999987543
No 318
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=23.46 E-value=45 Score=21.07 Aligned_cols=20 Identities=15% Similarity=0.420 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 17 ~~~~eLsf~~Gd~i~v~~~~ 36 (93)
T 1uff_A 17 RNHDEMSFNSGDIIQVDEKT 36 (93)
T ss_dssp CSSSCCCBCTTCEEEECSSC
T ss_pred CCCCCcCCCCCCEEEEeEcc
Confidence 45779999999999997654
No 319
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Probab=23.37 E-value=38 Score=20.29 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
..+.+|.++-||+|.|.-+.
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~~ 38 (73)
T 2dbm_A 19 ENEGELGFKEGDIITLTNQI 38 (73)
T ss_dssp CSTTCCCBCTTCEEECCBCS
T ss_pred CCCCCccCCCCCEEEEEEec
Confidence 45779999999999987653
No 320
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Probab=22.97 E-value=40 Score=19.74 Aligned_cols=20 Identities=10% Similarity=0.388 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
..+.+|.++-||+|.|.-..
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~ 41 (68)
T 1s1n_A 22 QQVGDLTFKKGEILLVIEKK 41 (68)
T ss_dssp SSSSCCCBCSSEEEEECSCC
T ss_pred CCCCcCCCCCCCEEEEEEcC
Confidence 45779999999999998663
No 321
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.97 E-value=58 Score=19.85 Aligned_cols=20 Identities=10% Similarity=0.307 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~~ 48 (81)
T 1x43_A 29 ANSTELSLLADEVITVFSVV 48 (81)
T ss_dssp SSTTBCCCCTTCEEEEECCT
T ss_pred CCCCcCCCCCCCEEEEEEcC
Confidence 56779999999999998763
No 322
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=22.87 E-value=41 Score=21.79 Aligned_cols=20 Identities=10% Similarity=0.398 Sum_probs=13.9
Q ss_pred ECCeecCCCCCccccCCCCCCEEEE
Q psy4523 70 FDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 70 fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
.||++|.. ...+.+||+|.+
T Consensus 73 vng~~i~~-----~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 73 VEGRKIEH-----QSTLSANQVVAL 92 (106)
T ss_dssp ETTEECSS-----EEECCTTCCEEE
T ss_pred ECCEECCC-----CeECCCCCEEEE
Confidence 37777764 346889998864
No 323
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=22.77 E-value=72 Score=19.05 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
..+.+|.++-||+|.|.-..
T Consensus 22 ~~~~eLs~~~Gd~i~v~~~~ 41 (74)
T 1j3t_A 22 KKDNHLNFSKHDIITVLEQQ 41 (74)
T ss_dssp CSTTBCCBCTTCEEEEEEEC
T ss_pred CCCCccCCCCCCEEEEEecC
Confidence 46778999999999998764
No 324
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=22.77 E-value=58 Score=19.18 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
..+.+|.++-||+|.|.-.
T Consensus 18 ~~~~eLs~~~Gd~i~v~~~ 36 (71)
T 1u5s_A 18 VTEEELNFEKGETMEVIEK 36 (71)
T ss_dssp CSSSBCCCCSSCCEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEC
Confidence 4577999999999999876
No 325
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=22.49 E-value=43 Score=22.93 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=20.7
Q ss_pred EECCeecCCCCCccccCCCCCCEEEEEeeecCCCc
Q psy4523 69 RFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFK 103 (126)
Q Consensus 69 ~fdG~rL~~~~TP~dL~MeDGD~Idv~~~Q~GG~~ 103 (126)
+.||.+|... ....+.+||+|.+--...+|..
T Consensus 78 ~vNg~~l~~~---~~~~L~~GD~I~lG~~~~~~~~ 109 (138)
T 2pie_A 78 WLNRARLEPL---RVYSIHQGDYIQLGVPLENKEN 109 (138)
T ss_dssp EETTEECCTT---CCEECCTTCEEEESCCCTTCSS
T ss_pred EECCEEcCCC---CcEECCCCCEEEECCCCCCCce
Confidence 3478887653 2356889999988665445443
No 326
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=22.47 E-value=68 Score=18.93 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=16.1
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-+
T Consensus 20 ~~~~eLs~~~Gd~i~v~~~ 38 (69)
T 1uhf_A 20 VEPGDLTFTEGEEILVTQK 38 (69)
T ss_dssp SSSSBCCBCTTCEEEECEE
T ss_pred CCcCccCCCCCCEEEEEEe
Confidence 4678999999999998755
No 327
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}
Probab=22.44 E-value=70 Score=19.03 Aligned_cols=19 Identities=5% Similarity=0.319 Sum_probs=16.5
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
..+.+|.++-||+|.|.-+
T Consensus 19 ~~~~eLs~~~Gd~i~v~~~ 37 (72)
T 2jw4_A 19 QQEQELDIKKNERLWLLDD 37 (72)
T ss_dssp SSTTSCCCCTTCEEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEC
Confidence 4678999999999999875
No 328
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=22.22 E-value=71 Score=18.90 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-..
T Consensus 21 ~~~~eLs~~~Gd~i~v~~~~ 40 (73)
T 2k9g_A 21 QNDDELTIKEGDIVTLINKD 40 (73)
T ss_dssp SSTTBCCBCTTCEEEEEECC
T ss_pred CCCCeeeECCCCEEEEEECC
Confidence 46789999999999998663
No 329
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=22.02 E-value=64 Score=19.32 Aligned_cols=19 Identities=5% Similarity=0.316 Sum_probs=16.4
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.+.-||+|.|.-+
T Consensus 16 ~~~~ELsf~~Gd~i~vl~~ 34 (67)
T 2b86_A 16 QQDQELDIKKNERLWLLDD 34 (67)
T ss_dssp SSTTSCCBCTTCEEEEEEC
T ss_pred CCCCccccCCCCEEEEEec
Confidence 4578999999999999876
No 330
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.96 E-value=76 Score=19.53 Aligned_cols=21 Identities=10% Similarity=0.332 Sum_probs=17.3
Q ss_pred CCccccCCCCCCEEEEEeeec
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQT 99 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q~ 99 (126)
..+.+|.++-||+|.|.-...
T Consensus 31 ~~~~eLs~~~Gd~i~v~~~~~ 51 (85)
T 2yuq_A 31 NDPQELALRRNEEYCLLDSSE 51 (85)
T ss_dssp SCSSBCCCCBTEEEEEEECCS
T ss_pred CCCCcCCCCCCCEEEEEEecC
Confidence 567899999999999986643
No 331
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.69 E-value=54 Score=20.25 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.2
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-.
T Consensus 20 ~~~~eLsf~~Gd~i~v~~~ 38 (85)
T 2dlp_A 20 DNCSLLSFHRGDLIKLLPV 38 (85)
T ss_dssp SSSSBCCBCTTCEEEECCC
T ss_pred cCcCCccCcCCCEEEEEEc
Confidence 5677999999999999864
No 332
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=21.61 E-value=57 Score=20.80 Aligned_cols=18 Identities=17% Similarity=0.582 Sum_probs=12.9
Q ss_pred CCeecCCCCCccccCCCCCCEEEE
Q psy4523 71 DGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 71 dG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
||+++. ...+.+||+|.+
T Consensus 70 ng~~i~------~~~L~~gd~i~i 87 (100)
T 3po8_A 70 NNAPVQ------EWQLADGDVIRL 87 (100)
T ss_dssp TTEECS------EEECCTTCEEEE
T ss_pred CCEECc------eEECCCCCEEEE
Confidence 666664 357899998865
No 333
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=21.31 E-value=65 Score=21.70 Aligned_cols=85 Identities=19% Similarity=0.228 Sum_probs=47.4
Q ss_pred cEEEEEEec----cCCEEEEEecC----CCcHHHHHHHHHHHhhhhhhhhhh-hcc---CccceeEEEECCeecCCCCCc
Q psy4523 14 HINLKVLGQ----DNNVVQFKIKK----GTPLRKLMNAYCERCVSILSVLIT-LQN---LSMSTVRFRFDGQAINEQDTP 81 (126)
Q Consensus 14 ~I~Ikv~~~----~g~~v~fkIk~----tt~l~kL~~~y~~~~~~~~~~~~~-~~g---l~~~~~rF~fdG~rL~~~~TP 81 (126)
.|+|++-+. -|++..+.+.. ..+++.|.+..++++... +..-. ..| +.+. +-.+.||..+.-- --
T Consensus 6 ~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~~~-r~~lf~~~g~~~lrpg-IlVLVNg~d~e~l-~g 82 (110)
T 2k9x_A 6 HITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYVKE-RPDLLVDQTGQTLRPG-ILVLVNSCDAEVV-GG 82 (110)
T ss_dssp CCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTCCS-CHHHHBCSSSSSBCTT-EEEEESSSBHHHH-TS
T ss_pred EEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcccc-chhhEecCCCcccCCC-eEEEECCeeeecc-CC
Confidence 455555531 13334555552 247999998888873111 11100 123 4343 6677788777421 11
Q ss_pred cccCCCCCCEEEEEeeecCC
Q psy4523 82 STLEMEEGDTIEIYQQQTGG 101 (126)
Q Consensus 82 ~dL~MeDGD~Idv~~~Q~GG 101 (126)
.+..++|||+|.++...-||
T Consensus 83 ldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 83 MDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp SCCCCCSSCEEEEEECCCCC
T ss_pred cccCCCCcCEEEEeCCCccc
Confidence 23458999998887666665
No 334
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=21.29 E-value=2e+02 Score=19.52 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=33.0
Q ss_pred CCCcEEEEEEeccCCEEEEEecCCCcHHHHHHHHHHHh
Q psy4523 11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERC 48 (126)
Q Consensus 11 ~~~~I~Ikv~~~~g~~v~fkIk~tt~l~kL~~~y~~~~ 48 (126)
.++.|.|.+.-.+|--+.+.+.++.+|..++...-+++
T Consensus 16 ~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA 53 (108)
T 2v1y_A 16 MPPRILVECLLPNGMIVTLECLREATLITIKHELFKEA 53 (108)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred CCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHH
Confidence 45789999999999999999999999999999655553
No 335
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=21.10 E-value=44 Score=23.25 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=15.2
Q ss_pred ECCeecCCCCCccccCCCCCCEEEE
Q psy4523 70 FDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 70 fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
.||.+|... ...|.+||+|.+
T Consensus 91 VNg~~i~~~----~~~L~~GD~I~l 111 (151)
T 2jqj_A 91 INGNRLVKK----DYILKNGDRIVF 111 (151)
T ss_dssp ETTEECCSS----CEEECSSEEEEE
T ss_pred ECCEEcCCC----ceECCCCCEEEE
Confidence 377777654 456889998865
No 336
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=20.82 E-value=1.8e+02 Score=18.96 Aligned_cols=45 Identities=7% Similarity=0.149 Sum_probs=32.6
Q ss_pred CcEEEEEEeccCCEE-EEEecCC--CcHHHHHHHHHHHhhhhhhhhhhhccCccceeEEEE
Q psy4523 13 EHINLKVLGQDNNVV-QFKIKKG--TPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF 70 (126)
Q Consensus 13 ~~I~Ikv~~~~g~~v-~fkIk~t--t~l~kL~~~y~~~~~~~~~~~~~~~gl~~~~~rF~f 70 (126)
..+.||.+ -+.++ .|.+.++ .++..+....... +.+....+.+.|
T Consensus 5 ~~l~vKsk--f~aE~RRFs~d~~~~~~fe~f~~lv~~l-----------h~L~~~~f~i~Y 52 (86)
T 1wmh_B 5 SIVEVKSK--FDAEFRRFALPRASVSGFQEFSRLLRAV-----------HQIPGLDVLLGY 52 (86)
T ss_dssp CEEEEEEE--ETTEEEEEEEEGGGCCCHHHHHHHHHHH-----------TTCTTCCCEEEE
T ss_pred CEEEEEee--cCCeeeEeEccCCCCCCHHHHHHHHHHH-----------cCCCCCCEEEEE
Confidence 45555554 45555 5999865 8899999998888 778666777776
No 337
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=20.69 E-value=73 Score=18.53 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=14.1
Q ss_pred CccccCCCCCCEEEEEee
Q psy4523 80 TPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 80 TP~dL~MeDGD~Idv~~~ 97 (126)
.+++|.++-||+|.|..+
T Consensus 21 ~~e~Lsf~~Gd~i~v~~~ 38 (67)
T 3rnj_A 21 NSTLLSFKEGDLITLLVP 38 (67)
T ss_dssp CTTBCCBCTTCEEEECSS
T ss_pred CCCCccCCCCCEEEEeec
Confidence 344599999999998743
No 338
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A
Probab=20.68 E-value=89 Score=19.04 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=16.9
Q ss_pred CCccccCCCCCCEEEEEeee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQQ 98 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~Q 98 (126)
+.+.+|.++-||+|.|.-+.
T Consensus 37 ~~~~eLs~~~Gd~i~v~~~~ 56 (86)
T 2oi3_A 37 IHHEDLSFQKGDQMVVLEES 56 (86)
T ss_dssp SSSSCCCCCTTCEEEEEEES
T ss_pred CCCCcCcCCCCCEEEEEEcC
Confidence 46778999999999998765
No 339
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=20.58 E-value=75 Score=21.70 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=16.3
Q ss_pred eEEEECCeecCCCCCccccCCCCCCEEEE
Q psy4523 66 VRFRFDGQAINEQDTPSTLEMEEGDTIEI 94 (126)
Q Consensus 66 ~rF~fdG~rL~~~~TP~dL~MeDGD~Idv 94 (126)
..|+ ||++|.... -..|.+||+|.+
T Consensus 95 GT~v-Ng~ri~~~~---~~~L~~GD~I~~ 119 (130)
T 4h87_A 95 GTFL-NKTRIPPRT---YCRVHVGHVVRF 119 (130)
T ss_dssp CEEE-TTEECCTTC---CEECCTTCEEEE
T ss_pred ceEE-CCEECCCCc---eeECCCCCEEEE
Confidence 3443 777776532 245899999865
No 340
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=20.48 E-value=87 Score=19.42 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=16.6
Q ss_pred CCccccCCCCCCEEEEEee
Q psy4523 79 DTPSTLEMEEGDTIEIYQQ 97 (126)
Q Consensus 79 ~TP~dL~MeDGD~Idv~~~ 97 (126)
+.+.+|.++-||+|.|.-+
T Consensus 29 ~~~~eLs~~~Gd~i~v~~~ 47 (91)
T 1wx6_A 29 VTEEELNFEKGETMEVIEK 47 (91)
T ss_dssp SSSSBCCCCTTCEEEEEEC
T ss_pred CCCCcccCCCCCEEEEEEC
Confidence 5678999999999999876
Done!