RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4523
(126 letters)
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP,
complex, protein binding, hydrolase; 2.30A {Homo
sapiens} SCOP: d.15.1.1
Length = 91
Score = 114 bits (287), Expect = 9e-35
Identities = 56/92 (60%), Positives = 66/92 (71%), Gaps = 11/92 (11%)
Query: 11 TDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRF 70
++HINLKV GQD +VVQFKIK+ TPL KLM AYCER LSM +RFRF
Sbjct: 2 ANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-----------GLSMRQIRFRF 50
Query: 71 DGQAINEQDTPSTLEMEEGDTIEIYQQQTGGF 102
DGQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 51 DGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP,
complex, protein binding, hydrolase; 2.60A {Homo
sapiens} SCOP: d.15.1.1
Length = 94
Score = 114 bits (287), Expect = 1e-34
Identities = 56/91 (61%), Positives = 66/91 (72%), Gaps = 11/91 (12%)
Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFD 71
++HINLKV GQD +VVQFKIK+ TPL KLM AYCER LSM +RFRFD
Sbjct: 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-----------GLSMRQIRFRFD 53
Query: 72 GQAINEQDTPSTLEMEEGDTIEIYQQQTGGF 102
GQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 54 GQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP:
d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Length = 93
Score = 114 bits (286), Expect = 2e-34
Identities = 59/104 (56%), Positives = 71/104 (68%), Gaps = 14/104 (13%)
Query: 1 MTEEKKES---KSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLIT 57
M +EK + ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ--------- 51
Query: 58 LQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
LSM +RFRFDGQ INE DTP+ LEME+ DTI+++QQQTGG
Sbjct: 52 --GLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule,
structural genomics, sentrin2, NPPFSA; NMR {Homo
sapiens} SCOP: d.15.1.1
Length = 104
Score = 114 bits (287), Expect = 2e-34
Identities = 55/100 (55%), Positives = 67/100 (67%), Gaps = 11/100 (11%)
Query: 2 TEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL 61
++ ++HINLKV GQD +VVQFKIK+ TPL KLM AYCER L
Sbjct: 12 KPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-----------GL 60
Query: 62 SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
SM +RFRFDGQ INE DTP+ LEME+ DTI+++QQQT G
Sbjct: 61 SMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division,
nuclear protein, ubiquitin-like modifier, UBL
conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1
PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B
3uip_B* 1tgz_B* 2bf8_B
Length = 79
Score = 112 bits (283), Expect = 3e-34
Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 11/89 (12%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
E+I LKV+GQD++ + FK+K T L+KL +YC+R + M+++RF F+G
Sbjct: 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-----------GVPMNSLRFLFEG 50
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
Q I + TP L MEE D IE+YQ+QTGG
Sbjct: 51 QRIADNHTPKELGMEEEDVIEVYQEQTGG 79
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP:
d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A
3kyc_D* 3rzw_C
Length = 97
Score = 110 bits (276), Expect = 4e-33
Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 11/101 (10%)
Query: 1 MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
+ E K E+I LKV+GQD++ + FK+K T L+KL +YC+R
Sbjct: 8 PSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-----------G 56
Query: 61 LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
+ M+++RF F+GQ I + TP L MEE D IE+YQ+QTGG
Sbjct: 57 VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier,
signaling protein; NMR {Trypanosoma brucei}
Length = 110
Score = 110 bits (275), Expect = 1e-32
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 3 EEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS 62
+ K + +KV+ D + F+IK T L+KL++ YC++ +S
Sbjct: 15 GAEGTCKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQ-----------GIS 63
Query: 63 MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQ 104
++VRF FDG I+E TP L ME+ D I+ +QTGG +
Sbjct: 64 RNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGLEH 105
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM,
ligase/protein binding complex; 1.90A {Saccharomyces
cerevisiae} SCOP: d.15.1.1
Length = 106
Score = 109 bits (273), Expect = 2e-32
Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Query: 1 MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
E K + HINLKV ++ + FKIKK TPLR+LM A+ +R
Sbjct: 18 RGSEVKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQ-----------G 65
Query: 61 LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
M ++RF +DG I TP L+ME+ D IE +++Q GG
Sbjct: 66 KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex
protein TAS3; PIN, rossmann fold, SPOC, alpha-helical
hairpin, heterochrom silencing, RITS, RNAI, argonaute;
2.90A {Saccharomyces cerevisiae}
Length = 207
Score = 111 bits (278), Expect = 4e-32
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 2 TEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL 61
E K + HINLKV ++ + FKIKK TPLR+LM A+ +R
Sbjct: 45 KPEVKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQ-----------GK 92
Query: 62 SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQTPQL 108
M ++ F +DG I TP L+ME+ D IE +++Q GG P L
Sbjct: 93 EMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGLPSLPFL 139
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation,
inhibitor, TETR intermediate, ligase, nucleus,
phosphoprotein; HET: VMX; 2.61A {Homo sapiens}
Length = 115
Score = 106 bits (266), Expect = 3e-31
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 11/99 (11%)
Query: 2 TEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNL 61
+ E K E+I LKV+GQD++ + FK+K T L+KL +YC+R +
Sbjct: 28 STEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQ-----------GV 76
Query: 62 SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTG 100
M+++RF F+GQ I + TP L MEE D IE+YQ+Q G
Sbjct: 77 PMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel,
two helices, protein transport; 1.20A {Homo sapiens}
SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Length = 72
Score = 102 bits (257), Expect = 2e-30
Identities = 51/83 (61%), Positives = 59/83 (71%), Gaps = 11/83 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV GQD +VVQFKIK+ TPL KLM AYCER LSM +RFRFDGQ
Sbjct: 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ-----------GLSMRQIRFRFDGQ 49
Query: 74 AINEQDTPSTLEMEEGDTIEIYQ 96
INE DTP+ LEME+ DTI+++Q
Sbjct: 50 PINETDTPAQLEMEDEDTIDVFQ 72
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics
center for infectious disease, SMT, transcription; 2.25A
{Reston ebolavirus}
Length = 227
Score = 106 bits (266), Expect = 4e-30
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 12/102 (11%)
Query: 1 MTEEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
+ E K + HINLKV ++ + FKIKK TPLR+LM A+ +R
Sbjct: 8 HSGEVKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQ-----------G 55
Query: 61 LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGF 102
M ++RF +DG I TP L+ME+ D IE +++Q GG
Sbjct: 56 KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGL 97
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil,
cytoplasm, methylation, nucleus, transcription; 1.00A
{Mus musculus} PDB: 3a4s_C 3rd2_A
Length = 79
Score = 101 bits (254), Expect = 7e-30
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 11 TDEHINLKVLGQD-NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFR 69
+ + L+V G++ + +++ + +PL+ LM+ Y E LS + F
Sbjct: 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEA-----------MGLSGHKLSFF 52
Query: 70 FDGQAINEQDTPSTLEMEEGDTIEIY 95
FDG ++ ++ P+ L +E GD IE++
Sbjct: 53 FDGTKLSGKELPADLGLESGDLIEVW 78
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells,
cytoplasmic 2- interacting protein, ubiquitin like
homologue; NMR {Homo sapiens}
Length = 97
Score = 100 bits (251), Expect = 3e-29
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 2 TEEKKESKSTDEHINLKVLGQD-NNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQN 60
+ S T + + L+V G++ + ++ + + +PL+ LM+ Y E
Sbjct: 13 GLVPRGSTETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEA-----------MG 61
Query: 61 LSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIY 95
LS + F FDG ++ ++ P+ L ME GD IE++
Sbjct: 62 LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication,
DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Length = 200
Score = 71.9 bits (175), Expect = 7e-17
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 12/102 (11%)
Query: 3 EEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS 62
E K + HINLKV ++ + FKIKK TPLR+LM A+ +R
Sbjct: 18 PEVKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQ-----------GKE 65
Query: 63 MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQ 104
M ++RF +DG I TP L+ME+ D IE +++Q GG +
Sbjct: 66 MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGGGE 107
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural
genomics, PSI-biology, Pro structure initiative; NMR
{Homo sapiens}
Length = 95
Score = 67.7 bits (165), Expect = 3e-16
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 4 EKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSM 63
E T LK+ + ++V+ ++ PL+ +++ +S
Sbjct: 11 EGPTLPETPRLFPLKIRCR-ADLVRLPLRMSEPLQSVVDHMATH-----------LGVSP 58
Query: 64 STVRFRFDGQAINEQDTPSTLEMEEGDTIE 93
S + F ++ TP TL++ D I+
Sbjct: 59 SRILLLFGETELSPTATPRTLKLGVADIID 88
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO,
genome stability, DNA damage, DNA recombination,
nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe}
PDB: 3rcz_A*
Length = 82
Score = 43.0 bits (101), Expect = 7e-07
Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 12 DEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMST-VRFRF 70
+ I L + + ++ I ++ L+ YC +S +R F
Sbjct: 7 HKLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTE-----------VKISFHERIRLEF 55
Query: 71 DGQAINEQDTPSTLEMEEGDTIEI 94
+G+ ++ D + E+E+ D + +
Sbjct: 56 EGEWLDPNDQVQSTELEDEDQVSV 79
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 28.8 bits (65), Expect = 0.13
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 78 QDTPSTLEMEEGDTIEIYQQQTGG 101
+ S L +++GD + I + + G
Sbjct: 14 SGSSSELPLKKGDIVFISRDEPSG 37
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 28.3 bits (64), Expect = 0.13
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 78 QDTPSTLEMEEGDTIEIYQQQTGG 101
+PS L +++GD I I +++ G
Sbjct: 12 SGSPSELPLKKGDVIYITREEPSG 35
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 27.8 bits (62), Expect = 0.47
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 66 VRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
+ A ++ L +E GD +++ + G
Sbjct: 21 AIQKRVPCAYDKTA----LALEVGDIVKVTRMNING 52
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 27.3 bits (61), Expect = 0.49
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 66 VRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
+ A ++ L +E GD +++ + G
Sbjct: 6 AIQKRVPCAYDKTA----LALEVGDIVKVTRMNING 37
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 28.4 bits (63), Expect = 0.50
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 14/59 (23%)
Query: 72 GQAINEQDTPSTLEMEEGDTIEI--------------YQQQTGGFKQTPQLQIWHTESN 116
QA + P ++ E G +++ Q + P ++ S+
Sbjct: 7 PQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSH 65
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 27.0 bits (60), Expect = 0.70
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 66 VRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
V F + L++++GD I+I + G
Sbjct: 14 VHTDFTPSPYDTDS----LKLKKGDIIDIISKPPMG 45
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 26.5 bits (59), Expect = 0.76
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 66 VRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
V + A ++ L +E G+ +++ + G
Sbjct: 11 VIQKRVPNAYDKTA----LALEVGELVKVTKINVSG 42
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.78
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 20/88 (22%)
Query: 47 RCVSILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGFKQTP 106
C S +VL LQ L ++ D + D S +++ I Q + ++
Sbjct: 191 NCNSPETVLEMLQKLL-----YQIDPNWTSRSDHSSNIKLR----IHSIQAELRRLLKSK 241
Query: 107 QLQ--------IWHTES-NMLDPSLQSK 125
+ + + ++ N + L K
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFN--LSCK 267
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 26.5 bits (59), Expect = 0.84
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 50 SILSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
S+ L T ++ +D +AI E D L +G+ +I G
Sbjct: 2 SMTGTLRTRGGTGVTLFVALYDYEAITEDD----LSFHKGEKFQILNSSEGD 49
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 28.0 bits (62), Expect = 0.92
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 9/28 (32%)
Query: 65 TVRFRFDGQAINEQDTPSTLEMEEGDTI 92
V F+G+ LE EG+ +
Sbjct: 15 KVTIYFEGK---------ELEAYEGEKL 33
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 27.2 bits (60), Expect = 0.92
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 14/58 (24%)
Query: 73 QAINEQDTPSTLEMEEGDTIEI--------------YQQQTGGFKQTPQLQIWHTESN 116
QA + P ++ E G +++ Q + P ++ S+
Sbjct: 3 QAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSH 60
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 26.6 bits (59), Expect = 1.00
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 6/36 (16%)
Query: 66 VRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
V + + L + G I I ++ T G
Sbjct: 12 VTSAYVASGSEQ------LSLAPGQLILILKKNTSG 41
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 27.5 bits (60), Expect = 1.2
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 16 NLKVLGQDNNVVQFKIKKGT--PLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
+ KI + + L+N + R ++ S+L + + V F
Sbjct: 98 RGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFT 157
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
E D L E+G+ +EI +
Sbjct: 158 GERETD----LPFEQGERLEILSKTNQD 181
Score = 25.9 bits (56), Expect = 3.8
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 77 EQDTPSTLEMEEGDTIEIYQQQTGG 101
P+ L +++G T+ + Q+ + G
Sbjct: 259 NAYDPTQLRVKKGQTVLVTQKMSNG 283
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 26.1 bits (58), Expect = 1.5
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 65 TVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
+ Q+ +E + E+G T+E+ ++ G
Sbjct: 12 VTVQPYTSQSKDE------IGFEKGVTVEVIRKNLEG 42
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 26.0 bits (58), Expect = 1.6
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 62 SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
S + A ++ L++++G+ I + + G
Sbjct: 6 SGNMFVALHTYSAHRPEE----LDLQKGEGIRVLGKYQDG 41
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 25.7 bits (57), Expect = 1.6
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 62 SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTG 100
S T R++ A + ++ L + EGD + IY + G
Sbjct: 6 SGGTAVARYNFAARDMRE----LSLREGDVVRIYSRIGG 40
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 25.3 bits (56), Expect = 1.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 64 STVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
S VR +F+ Q NE + L +GD I + + + GG
Sbjct: 5 SVVRAKFNFQQTNEDE----LSFSKGDVIHVTRVEEGG 38
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 25.3 bits (56), Expect = 2.3
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 65 TVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
VR +F+ Q NE + L +GD I + + + GG
Sbjct: 8 VVRAKFNFQQTNEDE----LSFSKGDVIHVTRVEEGG 40
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 25.3 bits (56), Expect = 3.0
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 65 TVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
V+ RF+ + NE + L + +GD I + + + GG
Sbjct: 12 IVKARFNFKQTNEDE----LSVCKGDIIYVTRVEEGG 44
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 25.1 bits (55), Expect = 3.2
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 62 SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
S FD QA +D L GD +++ G
Sbjct: 6 SGQYFVALFDYQARTAED----LSFRAGDKLQVLDTSHEG 41
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 25.1 bits (55), Expect = 3.2
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 78 QDTPSTLEMEEGDTIEIYQQQTGG 101
+ T +EG ++E+ ++ G
Sbjct: 20 EGDEETAGFQEGVSMEVLERNPNG 43
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 25.0 bits (55), Expect = 3.3
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 62 SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
+ V +D E + L +EG I + ++ G
Sbjct: 16 YLEKVVAIYDYTKDKEDE----LSFQEGAIIYVIKKNDDG 51
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 25.1 bits (55), Expect = 3.4
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 65 TVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
+F+ A E + L + +G + + ++ + G
Sbjct: 19 PAYVKFNYMAEREDE----LSLIKGTKVIVMEKCSDG 51
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 25.1 bits (55), Expect = 3.5
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 62 SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTG 100
S R + +A N + + GD I++ ++ G
Sbjct: 4 GSSGYRALYPFEARNHDE----MSFNSGDIIQVDEKTVG 38
>3kw8_A Laccase, putative copper oxidase; two-domain laccase,
oxidoreductase, multicopper blue protein; HET: PG4 PGE;
2.29A {Streptomyces coelicolor}
Length = 276
Score = 26.1 bits (57), Expect = 3.8
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 83 TLEMEEGDTIEIY 95
+E+ EGDT+ I
Sbjct: 37 LIEVNEGDTLHIE 49
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 24.5 bits (54), Expect = 3.8
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 66 VRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
FRF + +E LE+E D + + Q
Sbjct: 8 AIFRFVPRHEDE------LELEVDDPLLVELQAEDY 37
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 24.5 bits (54), Expect = 4.3
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 62 SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
S + F N+ + LE++ GD IE+ + G
Sbjct: 6 SGRRCQVAFSYLPQNDDE----LELKVGDIIEVVGEVEEG 41
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 24.5 bits (54), Expect = 4.7
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 62 SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
+ F+ NE + LE++ GD I+I ++ G
Sbjct: 6 KKRQCKVLFEYIPQNEDE----LELKVGDIIDINEEVEEG 41
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 24.6 bits (54), Expect = 4.9
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 65 TVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
V + Q +E L ++ G+ +++ ++ G
Sbjct: 12 VVVSNYKKQENSE------LSLQAGEVVDVIEKNESG 42
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 24.5 bits (54), Expect = 4.9
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 65 TVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
R +D A N + L++ GD +E+ + G
Sbjct: 10 EYRALYDYTAQNPDE----LDLSAGDILEVILEGEDG 42
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 24.7 bits (54), Expect = 5.0
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 62 SMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
++ +D A D L +G+ +I + G
Sbjct: 5 GVTLFVALYDYNATRWTD----LSFHKGEKFQILEFGPGD 40
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281,
apoptosis, membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 25.0 bits (54), Expect = 5.3
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 6/32 (18%)
Query: 66 VRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQ 97
+ F G + L ++ GD + I +
Sbjct: 64 AIYNFQGSGAPQ------LSLQIGDVVRIQET 89
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 24.6 bits (54), Expect = 5.3
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 65 TVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
+FD ++ L ++G ++ +YQ+ +
Sbjct: 11 EAIAKFDYVGRTARE----LSFKKGASLLLYQRASDD 43
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 24.6 bits (54), Expect = 5.4
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 66 VRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
FRF + +E LE+E D + + Q
Sbjct: 11 AIFRFVPRHEDE------LELEVDDPLLVELQAEDY 40
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 24.1 bits (53), Expect = 5.5
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 65 TVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTG 100
R F NE + L EG+ I + ++TG
Sbjct: 8 YCRTLFPYTGTNEDE----LTFREGEIIHLISKETG 39
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 24.1 bits (53), Expect = 5.9
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 63 MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
M + F+ NE + LE++ GD I+I ++ G
Sbjct: 1 MRQCKVLFEYIPQNEDE----LELKVGDIIDINEEVEEG 35
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 24.0 bits (53), Expect = 6.0
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 4/39 (10%)
Query: 63 MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
+ R + + + L EEGD I I
Sbjct: 3 VKVFRALYTFEPRTPDE----LYFEEGDIIYITDMSDTN 37
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 24.2 bits (53), Expect = 6.2
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 65 TVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
V+ FD +A E + L + I+ ++Q GG
Sbjct: 8 AVKALFDYKAQREDE----LTFIKSAIIQNVEKQEGG 40
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 24.1 bits (53), Expect = 6.5
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 65 TVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTG 100
V F ++ Q +E L ++EGD + + +
Sbjct: 6 KVIFPYEAQNDDE------LTIKEGDIVTLINKDCI 35
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 23.7 bits (52), Expect = 7.0
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 63 MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
M FD QA ++ + L + G+ I +++ GG
Sbjct: 1 MVEAIVEFDYQAQHDDE----LTISVGEIITNIRKEDGG 35
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 25.4 bits (54), Expect = 7.6
Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Query: 3 EEKKESKSTDEHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLS 62
E+ S +H N + L +I + T
Sbjct: 179 EKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPV 238
Query: 63 MSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
+ + A ++ L +E GD +++ + G
Sbjct: 239 FAKAIQKRVPCAYDKTA----LALEVGDIVKVTRMNING 273
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 25.0 bits (54), Expect = 7.7
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 8/88 (9%)
Query: 18 KVLGQDNNVVQFKIKKGTPLRKLMNAYCE----RCVSILSVLITLQNLSMSTVRFRFDGQ 73
KVL + K L +L++ + R I I + V+ FD
Sbjct: 109 KVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFD 168
Query: 74 AINEQDTPSTLEMEEGDTIEIYQQQTGG 101
+ + L GD I +
Sbjct: 169 PQEDGE----LGFRRGDFIHVMDNSDPN 192
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.358
Gapped
Lambda K H
0.267 0.0555 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,708,464
Number of extensions: 85883
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 69
Length of query: 126
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 44
Effective length of database: 4,412,271
Effective search space: 194139924
Effective search space used: 194139924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)