RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4523
(126 letters)
>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 100 bits (251), Expect = 7e-30
Identities = 52/83 (62%), Positives = 60/83 (72%), Gaps = 11/83 (13%)
Query: 14 HINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQ 73
HINLKV GQD +VVQFKIK+ TPL KLM AYCER Q LSM +RFRFDGQ
Sbjct: 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER-----------QGLSMRQIRFRFDGQ 49
Query: 74 AINEQDTPSTLEMEEGDTIEIYQ 96
INE DTP+ LEME+ DTI+++Q
Sbjct: 50 PINETDTPAQLEMEDEDTIDVFQ 72
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 77
Score = 94.0 bits (234), Expect = 3e-27
Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 11/88 (12%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
E+I LKV+GQD++ + FK+K T L+KL +YC+R Q + M+++RF F+G
Sbjct: 1 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQR-----------QGVPMNSLRFLFEG 49
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTG 100
Q I + TP L MEE D IE+YQ+QTG
Sbjct: 50 QRIADNHTPKELGMEEEDVIEVYQEQTG 77
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast
(Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Length = 79
Score = 83.3 bits (206), Expect = 5e-23
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 12/89 (13%)
Query: 13 EHINLKVLGQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDG 72
HINLKV ++ + FKIKK TPLR+LM A+ +R Q M ++RF +DG
Sbjct: 3 THINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKR-----------QGKEMDSLRFLYDG 50
Query: 73 QAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
I TP L+ME+ D IE +++Q GG
Sbjct: 51 IRIQADQTPEDLDMEDNDIIEAHREQIGG 79
>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 140
Score = 26.6 bits (58), Expect = 0.60
Identities = 7/58 (12%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 60 NLSMSTVRFRFDGQ-----AINEQDTPSTLEMEEGDTIEIYQQQTGGFKQTPQLQIWH 112
L++ + F G+ N ++++ G + + WH
Sbjct: 19 QLTIGAGQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQL---TEETTLHWH 73
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin
{Nitrosomonas europaea [TaxId: 915]}
Length = 112
Score = 26.2 bits (57), Expect = 0.85
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 56 ITLQNLSMSTVRFRFDG------QAINEQDTPSTLEMEEGDTIEIY 95
+ + + +G +A N + P TL +++GD +++
Sbjct: 6 VVINAYDTTIPELNVEGVTVKNIRAFNVLNEPETLVVKKGDAVKVV 51
>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 25.2 bits (55), Expect = 1.1
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 65 TVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGGF 102
V+ RF+ + NE + L + +GD I + + + GG+
Sbjct: 12 IVKARFNFKQTNEDE----LSVCKGDIIYVTRVEEGGW 45
>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 126
Score = 26.0 bits (57), Expect = 1.1
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 92 IEIYQQQTGGF-KQTPQLQIWHTE 114
+E+ ++ TG K TP +QIW E
Sbjct: 1 VELSKKVTGKLDKTTPGIQIWRIE 24
>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 25.1 bits (55), Expect = 1.2
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 65 TVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
V+ FD +A E + L + I+ ++Q GG
Sbjct: 8 AVKALFDYKAQREDE----LTFIKSAIIQNVEKQEGG 40
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon
Sulfolobus solfataricus [TaxId: 2287]}
Length = 115
Score = 25.6 bits (56), Expect = 1.4
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 21 GQDNNVVQFKIKKGTPLRKLMNAYCERCVSILSVLITLQNLSMSTVRFRFDGQAINEQDT 80
++ V ++ + + R++ R +S ++ T R + +
Sbjct: 11 NMESVNVTVRVLEASEARQIQTKNGVRTIS--EAIV-----GDETGRVKLT--LWGKHAG 61
Query: 81 PSTLEMEEGDTIEIYQQQTGGFKQTPQLQI 110
++EG ++I T FK QL
Sbjct: 62 ----SIKEGQVVKIENAWTTAFKGQVQLNA 87
>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 57
Score = 23.9 bits (52), Expect = 2.1
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 66 VRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
VR FD +E+D L ++GD + I +
Sbjct: 4 VRALFDFNGNDEED----LPFKKGDILRIRDKPEEQ 35
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 130
Score = 25.0 bits (54), Expect = 2.4
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 7/60 (11%)
Query: 60 NLSMSTVRFRFDGQ-----AINEQDTPSTLEMEEGDTIEI--YQQQTGGFKQTPQLQIWH 112
+L ++ DG +N + ++GD ++ T WH
Sbjct: 7 SLVVANAPVSPDGFLRDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWH 66
>d1t98a1 a.4.5.65 (A:8-118) Chromosome partition protein MukF
(KicB), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 111
Score = 24.8 bits (54), Expect = 2.5
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 85 EMEEGDTIEIYQQQTGGFKQT 105
EM EG+ ++ ++ + F+QT
Sbjct: 39 EMSEGELVDAFRHVSDAFEQT 59
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier
protein ThiS {Escherichia coli [TaxId: 562]}
Length = 65
Score = 23.1 bits (50), Expect = 5.6
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 52 LSVLITLQNLSMSTVRFRFDGQAINEQDTPSTLEMEEGDTIEIYQQQTGG 101
+ L+ + + + Q + + + +++GD I ++Q GG
Sbjct: 17 VHELLEQLDQRQAGAALAINQQIVPREQWAQHI-VQDGDQILLFQVIAGG 65
>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 23.8 bits (51), Expect = 5.8
Identities = 6/42 (14%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 66 VRFRFDGQAINEQDTPS---TLEMEEGDTIEIYQQQTGGFKQ 104
VR + +++ P + E D + I ++ + +
Sbjct: 26 VRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWI 67
>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 145
Score = 23.9 bits (51), Expect = 6.0
Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 66 VRFRFDGQAINEQDTPST---LEMEEGDTIEIYQQQTGGF 102
V+ ++D P + + D + I ++ +
Sbjct: 26 VKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDW 65
>d1yfba1 b.129.1.3 (A:3-53) Transcription-state regulator AbrB,
the N-terminal DNA recognition domain {Bacillus
subtilis [TaxId: 1423]}
Length = 51
Score = 22.2 bits (48), Expect = 7.3
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 83 TLEMEEGDTIEIY 95
TL + E D +EIY
Sbjct: 25 TLGIAEKDALEIY 37
>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 112
Score = 23.3 bits (50), Expect = 8.9
Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 7/29 (24%)
Query: 83 TLEMEEGDTIEIYQQQTGGFKQTPQLQIW 111
TLE+ T I KQ P QIW
Sbjct: 50 TLEIPAFGTYVIN-------KQPPNKQIW 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.129 0.358
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 422,493
Number of extensions: 16976
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 24
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.5 bits)